printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild apbs 2>&1 The package 'apbs' will be built without being installed. Reading build dependency for apbs-1.4.0-1... Reading dependency for apbs-1.4.0-1... Reading build conflict for apbs-1.4.0-1... The package 'readline6' will be installed. Reading dependency for readline6-6.3.6-1... Reading runtime dependency for readline6-6.3.6-1... The package 'maloc' will be installed. Reading dependency for maloc-1.5-2... Reading runtime dependency for maloc-1.5-2... The package 'cmake' will be installed. Reading dependency for cmake-2.8.12-2... Reading runtime dependency for cmake-2.8.12-2... The package 'readline6-shlibs' will be installed. Reading dependency for readline6-shlibs-6.3.6-1... Reading runtime dependency for readline6-shlibs-6.3.6-1... The package 'maloc-shlibs' will be installed. Reading dependency for maloc-shlibs-1.5-2... Reading runtime dependency for maloc-shlibs-1.5-2... The package 'python27' will be installed. Reading dependency for python27-2.7.8-1... Reading runtime dependency for python27-2.7.8-1... The package 'libidn-shlibs' will be installed. Reading dependency for libidn-shlibs-1.22-6... Reading runtime dependency for libidn-shlibs-1.22-6... The package 'python27-shlibs' will be installed. Reading dependency for python27-shlibs-2.7.8-1... Reading runtime dependency for python27-shlibs-2.7.8-1... The package 'blt-shlibs' will be installed. Reading dependency for blt-shlibs-2.4z-160... Reading runtime dependency for blt-shlibs-2.4z-160... The package 'db53-aes-shlibs' will be installed. Reading dependency for db53-aes-shlibs-5.3.21-2... Reading runtime dependency for db53-aes-shlibs-5.3.21-2... The package 'expat1-shlibs' will be installed. Reading dependency for expat1-shlibs-2.1.0-1... Reading runtime dependency for expat1-shlibs-2.1.0-1... The package 'gdbm3-shlibs' will be installed. Reading dependency for gdbm3-shlibs-1.8.3-4... Reading runtime dependency for gdbm3-shlibs-1.8.3-4... The package 'libffi6-shlibs' will be installed. Reading dependency for libffi6-shlibs-3.1-1... Reading runtime dependency for libffi6-shlibs-3.1-1... The package 'libncursesw5-shlibs' will be installed. Reading dependency for libncursesw5-shlibs-5.9-20110507-1... Reading runtime dependency for libncursesw5-shlibs-5.9-20110507-1... The package 'openssl100-shlibs' will be installed. Reading dependency for openssl100-shlibs-1.0.1h-1... Reading runtime dependency for openssl100-shlibs-1.0.1h-1... The package 'sqlite3-shlibs' will be installed. Reading dependency for sqlite3-shlibs-3.8.3.1-1... Reading runtime dependency for sqlite3-shlibs-3.8.3.1-1... The package 'tcltk' will be installed. Reading dependency for tcltk-8.6.1-104... Reading runtime dependency for tcltk-8.6.1-104... The package 'libjpeg9-shlibs' will be installed. Reading dependency for libjpeg9-shlibs-9a-1... Reading runtime dependency for libjpeg9-shlibs-9a-1... The package 'tcltk-shlibs' will be installed. Reading dependency for tcltk-shlibs-8.6.1-104... Reading runtime dependency for tcltk-shlibs-8.6.1-104... The package 'fontconfig2-shlibs' will be installed. Reading dependency for fontconfig2-shlibs-2.10.2-1... Reading runtime dependency for fontconfig2-shlibs-2.10.2-1... The package 'freetype219-shlibs' will be installed. Reading dependency for freetype219-shlibs-2.4.12-1... Reading runtime dependency for freetype219-shlibs-2.4.12-1... The package 'xft2-shlibs' will be installed. Reading dependency for xft2-shlibs-2.2.0-3... Reading runtime dependency for xft2-shlibs-2.2.0-3... The package 'fontconfig-config' will be installed. Reading dependency for fontconfig-config-2.10.2-1... Reading runtime dependency for fontconfig-config-2.10.2-1... The following package will be rebuilt: apbs The following 23 additional packages will be installed: blt-shlibs cmake db53-aes-shlibs expat1-shlibs fontconfig-config fontconfig2-shlibs freetype219-shlibs gdbm3-shlibs libffi6-shlibs libidn-shlibs libjpeg9-shlibs libncursesw5-shlibs maloc maloc-shlibs openssl100-shlibs python27 python27-shlibs readline6 readline6-shlibs sqlite3-shlibs tcltk tcltk-shlibs xft2-shlibs Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/APBS-1.4-source.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 28.3M 0 261k 0 0 303k 0 0:01:35 --:--:-- 0:01:35 303k 3 28.3M 3 1007k 0 0 541k 0 0:00:53 0:00:01 0:00:52 541k 6 28.3M 6 1869k 0 0 651k 0 0:00:44 0:00:02 0:00:42 651k 7 28.3M 7 2071k 0 0 523k 0 0:00:55 0:00:03 0:00:52 523k 9 28.3M 9 2781k 0 0 566k 0 0:00:51 0:00:04 0:00:47 566k 11 28.3M 11 3348k 0 0 501k 0 0:00:57 0:00:06 0:00:51 530k 11 28.3M 11 3349k 0 0 465k 0 0:01:02 0:00:07 0:00:55 438k 11 28.3M 11 3465k 0 0 406k 0 0:01:11 0:00:08 0:01:03 282k 11 28.3M 11 3465k 0 0 363k 0 0:01:19 0:00:09 0:01:10 249k 11 28.3M 11 3465k 0 0 329k 0 0:01:28 0:00:10 0:01:18 121k 11 28.3M 11 3465k 0 0 300k 0 0:01:36 0:00:11 0:01:25 24729 12 28.3M 12 3752k 0 0 299k 0 0:01:36 0:00:12 0:01:24 77484 13 28.3M 13 3916k 0 0 304k 0 0:01:35 0:00:12 0:01:23 103k 16 28.3M 16 4656k 0 0 335k 0 0:01:26 0:00:13 0:01:13 274k 17 28.3M 17 5096k 0 0 341k 0 0:01:24 0:00:14 0:01:10 373k 18 28.3M 18 5494k 0 0 346k 0 0:01:23 0:00:15 0:01:08 468k 21 28.3M 21 6105k 0 0 361k 0 0:01:20 0:00:16 0:01:04 539k 24 28.3M 24 7091k 0 0 397k 0 0:01:13 0:00:17 0:00:56 637k 27 28.3M 27 8115k 0 0 418k 0 0:01:09 0:00:19 0:00:50 627k 29 28.3M 29 8491k 0 0 416k 0 0:01:09 0:00:20 0:00:49 616k 30 28.3M 30 8827k 0 0 423k 0 0:01:08 0:00:20 0:00:48 666k 33 28.3M 33 9670k 0 0 442k 0 0:01:05 0:00:21 0:00:44 715k 36 28.3M 36 10.2M 0 0 447k 0 0:01:04 0:00:23 0:00:41 607k 37 28.3M 37 10.5M 0 0 450k 0 0:01:04 0:00:23 0:00:41 589k 39 28.3M 39 11.2M 0 0 461k 0 0:01:02 0:00:24 0:00:38 670k 41 28.3M 41 11.8M 0 0 468k 0 0:01:01 0:00:25 0:00:36 655k 43 28.3M 43 12.4M 0 0 466k 0 0:01:02 0:00:27 0:00:35 561k 44 28.3M 44 12.7M 0 0 468k 0 0:01:01 0:00:27 0:00:34 581k 46 28.3M 46 13.0M 0 0 462k 0 0:01:02 0:00:28 0:00:34 517k 47 28.3M 47 13.5M 0 0 466k 0 0:01:02 0:00:29 0:00:33 488k 49 28.3M 49 14.1M 0 0 467k 0 0:01:02 0:00:30 0:00:32 464k 51 28.3M 51 14.5M 0 0 467k 0 0:01:02 0:00:31 0:00:31 472k 52 28.3M 52 14.8M 0 0 462k 0 0:01:02 0:00:32 0:00:30 427k 53 28.3M 53 15.2M 0 0 460k 0 0:01:03 0:00:33 0:00:30 447k 55 28.3M 55 15.7M 0 0 462k 0 0:01:02 0:00:34 0:00:28 438k 56 28.3M 56 15.9M 0 0 455k 0 0:01:03 0:00:35 0:00:28 383k 57 28.3M 57 16.3M 0 0 454k 0 0:01:03 0:00:36 0:00:27 375k 59 28.3M 59 16.8M 0 0 455k 0 0:01:03 0:00:37 0:00:26 408k 61 28.3M 61 17.4M 0 0 458k 0 0:01:03 0:00:38 0:00:25 448k 63 28.3M 63 18.0M 0 0 462k 0 0:01:02 0:00:39 0:00:23 463k 64 28.3M 64 18.3M 0 0 460k 0 0:01:03 0:00:40 0:00:23 492k 66 28.3M 66 18.8M 0 0 461k 0 0:01:02 0:00:41 0:00:21 508k 68 28.3M 68 19.2M 0 0 452k 0 0:01:04 0:00:43 0:00:21 434k 68 28.3M 68 19.3M 0 0 451k 0 0:01:04 0:00:43 0:00:21 394k 70 28.3M 70 19.9M 0 0 454k 0 0:01:03 0:00:44 0:00:19 388k 72 28.3M 72 20.4M 0 0 457k 0 0:01:03 0:00:45 0:00:18 430k 74 28.3M 74 21.1M 0 0 461k 0 0:01:02 0:00:46 0:00:16 464k 76 28.3M 76 21.5M 0 0 460k 0 0:01:02 0:00:47 0:00:15 550k 77 28.3M 77 22.0M 0 0 461k 0 0:01:02 0:00:48 0:00:14 552k 79 28.3M 79 22.5M 0 0 462k 0 0:01:02 0:00:49 0:00:13 538k 81 28.3M 81 22.9M 0 0 458k 0 0:01:03 0:00:51 0:00:12 469k 81 28.3M 81 23.1M 0 0 457k 0 0:01:03 0:00:51 0:00:12 416k 83 28.3M 83 23.5M 0 0 456k 0 0:01:03 0:00:52 0:00:11 410k 84 28.3M 84 24.0M 0 0 456k 0 0:01:03 0:00:53 0:00:10 411k 86 28.3M 86 24.5M 0 0 459k 0 0:01:03 0:00:54 0:00:09 421k 88 28.3M 88 25.1M 0 0 461k 0 0:01:02 0:00:55 0:00:07 500k 89 28.3M 89 25.3M 0 0 457k 0 0:01:03 0:00:56 0:00:07 459k 91 28.3M 91 25.8M 0 0 457k 0 0:01:03 0:00:57 0:00:06 467k 93 28.3M 93 26.3M 0 0 458k 0 0:01:03 0:00:58 0:00:05 481k 93 28.3M 93 26.5M 0 0 454k 0 0:01:03 0:00:59 0:00:04 409k 94 28.3M 94 26.8M 0 0 451k 0 0:01:04 0:01:00 0:00:04 338k 96 28.3M 96 27.2M 0 0 450k 0 0:01:04 0:01:01 0:00:03 378k 97 28.3M 97 27.7M 0 0 451k 0 0:01:04 0:01:02 0:00:02 383k 99 28.3M 99 28.1M 0 0 451k 0 0:01:04 0:01:03 0:00:01 364k 100 28.3M 100 28.3M 0 0 450k 0 0:01:04 0:01:04 --:--:-- 397k Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/crypto/db53-aes-shlibs_5.3.21-2_darwin-x86_64.deb Selecting previously deselected package db53-aes-shlibs. (Reading database ... 4296 files and directories currently installed.) Unpacking db53-aes-shlibs (from .../db53-aes-shlibs_5.3.21-2_darwin-x86_64.deb) ... Setting up db53-aes-shlibs (5.3.21-2) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/expat1-shlibs_2.1.0-1_darwin-x86_64.deb Selecting previously deselected package expat1-shlibs. (Reading database ... 4306 files and directories currently installed.) Unpacking expat1-shlibs (from .../expat1-shlibs_2.1.0-1_darwin-x86_64.deb) ... Setting up expat1-shlibs (2.1.0-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/freetype219-shlibs_2.4.12-1_darwin-x86_64.deb Selecting previously deselected package freetype219-shlibs. (Reading database ... 4311 files and directories currently installed.) Unpacking freetype219-shlibs (from .../freetype219-shlibs_2.4.12-1_darwin-x86_64.deb) ... Setting up freetype219-shlibs (2.4.12-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/gdbm3-shlibs_1.8.3-4_darwin-x86_64.deb Selecting previously deselected package gdbm3-shlibs. (Reading database ... 4322 files and directories currently installed.) Unpacking gdbm3-shlibs (from .../gdbm3-shlibs_1.8.3-4_darwin-x86_64.deb) ... Setting up gdbm3-shlibs (1.8.3-4) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libffi6-shlibs_3.1-1_darwin-x86_64.deb Selecting previously deselected package libffi6-shlibs. (Reading database ... 4330 files and directories currently installed.) Unpacking libffi6-shlibs (from .../libffi6-shlibs_3.1-1_darwin-x86_64.deb) ... Setting up libffi6-shlibs (3.1-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libidn-shlibs_1.22-6_darwin-x86_64.deb Selecting previously deselected package libidn-shlibs. (Reading database ... 4331 files and directories currently installed.) Unpacking libidn-shlibs (from .../libidn-shlibs_1.22-6_darwin-x86_64.deb) ... Setting up libidn-shlibs (1.22-6) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjpeg9-shlibs_9a-1_darwin-x86_64.deb Selecting previously deselected package libjpeg9-shlibs. (Reading database ... 4332 files and directories currently installed.) Unpacking libjpeg9-shlibs (from .../libjpeg9-shlibs_9a-1_darwin-x86_64.deb) ... Setting up libjpeg9-shlibs (9a-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/libncursesw5-shlibs_5.9-20110507-1_darwin-x86_64.deb Selecting previously deselected package libncursesw5-shlibs. (Reading database ... 4335 files and directories currently installed.) Unpacking libncursesw5-shlibs (from .../libncursesw5-shlibs_5.9-20110507-1_darwin-x86_64.deb) ... Setting up libncursesw5-shlibs (5.9-20110507-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/openssl100-shlibs_1.0.1h-1_darwin-x86_64.deb Selecting previously deselected package openssl100-shlibs. (Reading database ... 4346 files and directories currently installed.) Unpacking openssl100-shlibs (from .../openssl100-shlibs_1.0.1h-1_darwin-x86_64.deb) ... Setting up openssl100-shlibs (1.0.1h-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/readline6_6.3.6-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/readline6-shlibs_6.3.6-1_darwin-x86_64.deb Selecting previously deselected package readline6. (Reading database ... 4367 files and directories currently installed.) Unpacking readline6 (from .../readline6_6.3.6-1_darwin-x86_64.deb) ... Selecting previously deselected package readline6-shlibs. Unpacking readline6-shlibs (from .../readline6-shlibs_6.3.6-1_darwin-x86_64.deb) ... Setting up readline6-shlibs (6.3.6-1) ... Setting up readline6 (6.3.6-1) ... * History: (history). The GNU history library API. install-info(/sw/share/info/history.info): creating new section `Libraries' * Readline: (readline). The GNU readline library API. * RLuserman: (rluserman). The GNU readline library User's Manual. Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/database/sqlite3-shlibs_3.8.3.1-1_darwin-x86_64.deb Selecting previously deselected package sqlite3-shlibs. (Reading database ... 4422 files and directories currently installed.) Unpacking sqlite3-shlibs (from .../sqlite3-shlibs_3.8.3.1-1_darwin-x86_64.deb) ... Setting up sqlite3-shlibs (3.8.3.1-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/cmake_2.8.12-2_darwin-x86_64.deb Selecting previously deselected package cmake. (Reading database ... 4426 files and directories currently installed.) Unpacking cmake (from .../cmake_2.8.12-2_darwin-x86_64.deb) ... Setting up cmake (2.8.12-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig2-shlibs_2.10.2-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig-config_2.10.2-1_darwin-x86_64.deb Selecting previously deselected package fontconfig2-shlibs. (Reading database ... 5156 files and directories currently installed.) Unpacking fontconfig2-shlibs (from .../fontconfig2-shlibs_2.10.2-1_darwin-x86_64.deb) ... Selecting previously deselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.10.2-1_darwin-x86_64.deb) ... Setting up fontconfig-config (2.10.2-1) ... Setting up fontconfig2-shlibs (2.10.2-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/maloc_1.5-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/maloc-shlibs_1.5-2_darwin-x86_64.deb Selecting previously deselected package maloc. (Reading database ... 5241 files and directories currently installed.) Unpacking maloc (from .../maloc_1.5-2_darwin-x86_64.deb) ... Selecting previously deselected package maloc-shlibs. Unpacking maloc-shlibs (from .../maloc-shlibs_1.5-2_darwin-x86_64.deb) ... Setting up maloc-shlibs (1.5-2) ... Setting up maloc (1.5-2) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/xft2-shlibs_2.2.0-3_darwin-x86_64.deb Selecting previously deselected package xft2-shlibs. (Reading database ... 5258 files and directories currently installed.) Unpacking xft2-shlibs (from .../xft2-shlibs_2.2.0-3_darwin-x86_64.deb) ... Setting up xft2-shlibs (2.2.0-3) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/tcltk_8.6.1-104_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/tcltk-shlibs_8.6.1-104_darwin-x86_64.deb Selecting previously deselected package tcltk. (Reading database ... 5267 files and directories currently installed.) Unpacking tcltk (from .../tcltk_8.6.1-104_darwin-x86_64.deb) ... Selecting previously deselected package tcltk-shlibs. Unpacking tcltk-shlibs (from .../tcltk-shlibs_8.6.1-104_darwin-x86_64.deb) ... Setting up tcltk-shlibs (8.6.1-104) ... Setting up tcltk (8.6.1-104) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/blt-shlibs_2.4z-160_darwin-x86_64.deb Selecting previously deselected package blt-shlibs. (Reading database ... 5743 files and directories currently installed.) Unpacking blt-shlibs (from .../blt-shlibs_2.4z-160_darwin-x86_64.deb) ... Setting up blt-shlibs (2.4z-160) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/python27_2.7.8-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/python27-shlibs_2.7.8-1_darwin-x86_64.deb Selecting previously deselected package python27. (Reading database ... 5749 files and directories currently installed.) Unpacking python27 (from .../python27_2.7.8-1_darwin-x86_64.deb) ... Selecting previously deselected package python27-shlibs. Unpacking python27-shlibs (from .../python27-shlibs_2.7.8-1_darwin-x86_64.deb) ... Setting up python27-shlibs (2.7.8-1) ... Setting up python27 (2.7.8-1) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-apbs-1.4.0-1 /sw/build.build dpkg-deb: building package `fink-buildlock-apbs-1.4.0-1' in `/sw/build.build/fink-buildlock-apbs-1.4.0-1_2014.07.27-21.27.02_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-apbs-1.4.0-1_2014.07.27-21.27.02_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-apbs-1.4.0-1. (Reading database ... 12960 files and directories currently installed.) Unpacking fink-buildlock-apbs-1.4.0-1 (from .../fink-buildlock-apbs-1.4.0-1_2014.07.27-21.27.02_darwin-x86_64.deb) ... Setting up fink-buildlock-apbs-1.4.0-1 (2014.07.27-21.27.02) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.hTNck env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/APBS-1.4-source.tar.gz apbs/ apbs/tests/ apbs/tests/README apbs/tests/apbs_check_results.py apbs/tests/apbs_tester.py apbs/tests/test_cases.cfg apbs/tests/apbs_logger.py apbs/tests/apbs_check_forces.py apbs/README apbs/CMakeLists.txt apbs/ChangeLog apbs/contrib/ apbs/contrib/iapbs/ apbs/contrib/iapbs/README apbs/contrib/iapbs/configure.ac apbs/contrib/iapbs/ChangeLog apbs/contrib/iapbs/test/ apbs/contrib/iapbs/test/save/ apbs/contrib/iapbs/test/save/mol1-auto.out.save apbs/contrib/iapbs/test/save/apbs-forces.out.save apbs/contrib/iapbs/test/save/mol1-manual.out.save apbs/contrib/iapbs/test/save/apbs.d9.out.save apbs/contrib/iapbs/test/save/smpbe-ion.out.save apbs/contrib/iapbs/test/save/smpbe-2ala.out.save apbs/contrib/iapbs/test/save/mol1-manual-loop.out.save apbs/contrib/iapbs/test/save/apbs-forces-tot.out.save apbs/contrib/iapbs/test/save/apbs.out.save apbs/contrib/iapbs/test/smpbe-2ala.in apbs/contrib/iapbs/test/ndiff.awk apbs/contrib/iapbs/test/test.sh apbs/contrib/iapbs/test/apbs-maps-write.in apbs/contrib/iapbs/test/smpbe-2ala.pqr apbs/contrib/iapbs/test/mol1-manual.in apbs/contrib/iapbs/test/apbs.pqr apbs/contrib/iapbs/test/mol1-auto.in apbs/contrib/iapbs/test/apbs-forces.pqr apbs/contrib/iapbs/test/smpbe-ion.pqr apbs/contrib/iapbs/test/apbs.in apbs/contrib/iapbs/test/mol1.pqr apbs/contrib/iapbs/test/mol1-manual-loop.in apbs/contrib/iapbs/test/mem.sh apbs/contrib/iapbs/test/apbs-forces-tot.in apbs/contrib/iapbs/test/apbs-forces.in apbs/contrib/iapbs/test/parallel.in apbs/contrib/iapbs/test/apbs-maps-read.in apbs/contrib/iapbs/test/apbs.d9.in apbs/contrib/iapbs/test/Makefile.am apbs/contrib/iapbs/test/smpbe-ion.in apbs/contrib/iapbs/AUTHORS apbs/contrib/iapbs/configure apbs/contrib/iapbs/modules/ apbs/contrib/iapbs/modules/CHARMM/ apbs/contrib/iapbs/modules/CHARMM/apbs.f apbs/contrib/iapbs/modules/CHARMM/patches/ apbs/contrib/iapbs/modules/CHARMM/patches/c32a2/ apbs/contrib/iapbs/modules/CHARMM/patches/c32a2/energy.patch apbs/contrib/iapbs/modules/CHARMM/patches/c32a2/README apbs/contrib/iapbs/modules/CHARMM/patches/c32a2/pbeq.patch apbs/contrib/iapbs/modules/CHARMM/patches/c32a2/misc.patch apbs/contrib/iapbs/modules/CHARMM/patches/c32a2/Makefile_gnu.patch apbs/contrib/iapbs/modules/CHARMM/patches/c32a2/install.patch apbs/contrib/iapbs/modules/CHARMM/patches/c31a1/ apbs/contrib/iapbs/modules/CHARMM/patches/c31a1/energy.patch apbs/contrib/iapbs/modules/CHARMM/patches/c31a1/README apbs/contrib/iapbs/modules/CHARMM/patches/c31a1/pbeq.patch apbs/contrib/iapbs/modules/CHARMM/patches/c31a1/misc.patch apbs/contrib/iapbs/modules/CHARMM/patches/c31a1/Makefile_gnu.patch apbs/contrib/iapbs/modules/CHARMM/patches/c31a1/install.patch apbs/contrib/iapbs/modules/CHARMM/patches/c35b2/ 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apbs/examples/protein-rna/PDB/model_outNB.pdb apbs/examples/protein-rna/template.in apbs/examples/protein-rna/fit.py apbs/examples/protein-rna/Makefile.am apbs/examples/protein-rna/model_outBoxB19.pqr apbs/examples/protein-rna/model_outNpep.pqr apbs/examples/pka-lig/ apbs/examples/pka-lig/README.html apbs/examples/pka-lig/bx6_7_lig_apbs.pqr apbs/examples/pka-lig/bx6_7_bin_apbs.pqr apbs/examples/pka-lig/apbs-smol-vdw.in apbs/examples/pka-lig/apbs-mol-surf.in apbs/examples/pka-lig/UHBD/ apbs/examples/pka-lig/UHBD/README apbs/examples/pka-lig/UHBD/uhbd1-bin.out apbs/examples/pka-lig/UHBD/uhbd1-apo.out apbs/examples/pka-lig/UHBD/uhbd1-lig.out apbs/examples/pka-lig/UHBD/uhbd2-lig.out apbs/examples/pka-lig/UHBD/uhbd2-bin.out apbs/examples/pka-lig/UHBD/uhbd2-apo.out apbs/examples/pka-lig/apbs-smol-surf.in apbs/examples/pka-lig/bx6_7_apo_apbs.pqr apbs/examples/pka-lig/apbs-mol-vdw.in apbs/examples/ion-protein/ apbs/examples/ion-protein/README.html apbs/examples/ion-protein/apbs-mol-pdiel2.in apbs/examples/ion-protein/491.pqr apbs/examples/ion-protein/apbs-smol-pdiel2.in apbs/examples/ion-protein/small491.pqr apbs/examples/ion-protein/UHBD/ apbs/examples/ion-protein/UHBD/small491.pdb apbs/examples/ion-protein/UHBD/491.pdb apbs/examples/ion-protein/UHBD/small491.inp apbs/examples/ion-protein/UHBD/small491.e2.log apbs/examples/ion-protein/UHBD/small491.log apbs/examples/ion-protein/complex.pqr apbs/examples/ion-protein/apbs-mol-pdiel12.in apbs/examples/ion-protein/apbs-smol-pdiel12.in apbs/examples/actin-dimer/ apbs/examples/actin-dimer/README.html apbs/examples/actin-dimer/apbs-mol-auto.in apbs/examples/actin-dimer/apbs-smol-auto.in apbs/examples/actin-dimer/mesh.m apbs/examples/actin-dimer/apbs-smol-parallel.in apbs/examples/actin-dimer/mol1.pqr apbs/examples/actin-dimer/UHBD/ apbs/examples/actin-dimer/UHBD/prot3.pdb apbs/examples/actin-dimer/UHBD/srsrf.dot apbs/examples/actin-dimer/UHBD/aheall-atom.charmm.dat apbs/examples/actin-dimer/UHBD/nuc.3-4.inp apbs/examples/actin-dimer/UHBD/nuc.3-4.full.log apbs/examples/actin-dimer/UHBD/single.inp apbs/examples/actin-dimer/UHBD/prot4.pdb apbs/examples/actin-dimer/apbs-mol-parallel.in apbs/examples/actin-dimer/complex.pqr apbs/examples/actin-dimer/mol2.pqr apbs/examples/ionize/ apbs/examples/ionize/README.html apbs/examples/ionize/acetic-acid.xml apbs/examples/ionize/acetate.pqr apbs/examples/ionize/acetic-acid.pqr apbs/examples/ionize/proton.pqr apbs/examples/ionize/proton.xml apbs/examples/ionize/apbs-mol.in apbs/examples/ionize/acetate.xml apbs/examples/ionize/apbs-smol.in apbs/examples/ionize/UHBD/ apbs/examples/ionize/UHBD/elec.out.orig.exam apbs/examples/ionize/UHBD/elec.dat.exam apbs/examples/ionize/UHBD/elec.inp.exam apbs/examples/ionize/UHBD/elec.pdb.exam apbs/examples/point-pmf/ apbs/examples/point-pmf/point-pmf-0.in apbs/examples/point-pmf/energy.dat apbs/examples/point-pmf/README.html apbs/examples/point-pmf/complex-0_4.in apbs/examples/point-pmf/complex-0_4.pqr apbs/examples/point-pmf/mol4.pqr apbs/examples/point-pmf/complex-0_1.pqr apbs/examples/point-pmf/mol0.pqr apbs/examples/point-pmf/complex-0_3.in apbs/examples/point-pmf/runme.sh apbs/examples/point-pmf/complex-0_1.in apbs/examples/point-pmf/apbs.in apbs/examples/point-pmf/mol1.pqr apbs/examples/point-pmf/mol3.pqr apbs/examples/point-pmf/complex-0_3.pqr apbs/examples/point-pmf/complex-0_2.pqr apbs/examples/point-pmf/mol2.pqr apbs/examples/point-pmf/complex-0_2.in apbs/examples/FKBP/ apbs/examples/FKBP/1d7h-dmso-complex.pqr apbs/examples/FKBP/1d7i-dss/ apbs/examples/FKBP/1d7i-dss/UHBD/ apbs/examples/FKBP/1d7i-dss/UHBD/dss-min.qcd apbs/examples/FKBP/1d7i-dss/UHBD/1d7i-min.qcd apbs/examples/FKBP/1d7i-dss/UHBD/bindf.inp apbs/examples/FKBP/1d7i-dss/UHBD/bindf.log apbs/examples/FKBP/dmso-min.pqr apbs/examples/FKBP/README.html apbs/examples/FKBP/1d7h-min.pqr apbs/examples/FKBP/1d7i-dss-mol.in apbs/examples/FKBP/dss-min.pqr apbs/examples/FKBP/1d7h-dmso-smol.in apbs/examples/FKBP/1d7i-min.pqr apbs/examples/FKBP/1d7h-dmso-mol.in apbs/examples/FKBP/1d7i-dss-complex.pqr apbs/examples/FKBP/1d7h-dmso/ apbs/examples/FKBP/1d7h-dmso/UHBD/ apbs/examples/FKBP/1d7h-dmso/UHBD/bindf.oldlog apbs/examples/FKBP/1d7h-dmso/UHBD/dmso-min.qcd apbs/examples/FKBP/1d7h-dmso/UHBD/pqr2qcd apbs/examples/FKBP/1d7h-dmso/UHBD/1d7h-min.qcd apbs/examples/FKBP/1d7h-dmso/UHBD/bindf.inp apbs/examples/FKBP/1d7h-dmso/UHBD/bindf.log apbs/examples/FKBP/1d7i-dss-smol.in apbs/examples/opal/ apbs/examples/opal/README.html apbs/examples/opal/actin-mol2.pqr apbs/examples/opal/actin-dimer.in apbs/examples/opal/born.xml apbs/examples/opal/actin-dimer-para.in apbs/examples/opal/actin-complex.pqr apbs/examples/opal/actin-mol1.pqr apbs/examples/hca-bind/ apbs/examples/hca-bind/acet.pqr apbs/examples/hca-bind/README.html apbs/examples/hca-bind/hca.pqr apbs/examples/hca-bind/mesh.m apbs/examples/hca-bind/apbs-mol.in apbs/examples/hca-bind/apbs-smol.in apbs/examples/hca-bind/UHBD/ apbs/examples/hca-bind/UHBD/bindf.out.orig apbs/examples/hca-bind/UHBD/bindf-nmap.out apbs/examples/hca-bind/UHBD/srsrf.dot apbs/examples/hca-bind/UHBD/bindf2.qcd apbs/examples/hca-bind/UHBD/bindf-nmap.inp apbs/examples/hca-bind/UHBD/bindf-nmap.err apbs/examples/hca-bind/UHBD/bindf2.err apbs/examples/hca-bind/UHBD/bindf.inp apbs/examples/hca-bind/UHBD/bindf.log apbs/examples/hca-bind/UHBD/bindf1.qcd apbs/examples/hca-bind/complex.pqr apbs/examples/alkanes/ apbs/examples/alkanes/hexane.pdb apbs/examples/alkanes/README.html apbs/examples/alkanes/isobutane.pdb apbs/examples/alkanes/methane.pdb apbs/examples/alkanes/pentane.pdb apbs/examples/alkanes/Makefile.in apbs/examples/alkanes/cyclopentane.pdb apbs/examples/alkanes/parm.dat apbs/examples/alkanes/alkanes.in apbs/examples/alkanes/2-methylbutane.pdb apbs/examples/alkanes/force.result apbs/examples/alkanes/apbs-forces.in apbs/examples/alkanes/neopentane.pdb apbs/examples/alkanes/mol.pdb apbs/examples/alkanes/ethane.pdb apbs/examples/alkanes/propane.pdb apbs/examples/alkanes/butane.pdb apbs/examples/alkanes/cyclohexane.pdb apbs/examples/solv/ apbs/examples/solv/methanol.pqr apbs/examples/solv/README.html apbs/examples/solv/Makefile.in apbs/examples/solv/methoxide.pqr apbs/examples/solv/apbs-mol.in apbs/examples/solv/apbs-smol.in apbs/examples/solv/UHBD/ apbs/examples/solv/UHBD/solv.inp.exam apbs/examples/solv/UHBD/solv.dat.exam apbs/examples/solv/UHBD/solv.out.orig.exam apbs/examples/solv/Makefile.am sudo -u fink-bld [ENV] sh -c /tmp/fink.cM9kh /tmp/fink.fx3EI #!/bin/bash -efv cd build CMAKE_OPTIONS="-DCMAKE_INSTALL_PREFIX=/sw \ -DCMAKE_VERBOSE_MAKEFILE=ON \ -DCMAKE_COLOR_MAKEFILE=ON \ -DCMAKE_BUILD_TYPE=Release \ -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON \ -DCMAKE_INSTALL_NAME_DIR=/sw/lib \ -DCMAKE_SYSTEM_PREFIX_PATH=\"/sw;\/usr\" \ -DCMAKE_FIND_FRAMEWORK=LAST \ -DENABLE_OPENMP:BOOL=OFF \ -DENABLE_MPI:BOOL=OFF \ -DCMAKE_OSX_DEPLOYMENT_TARGET:STRING="" \ -DCMAKE_OSX_SYSROOT:STRING=/" cmake $CMAKE_OPTIONS -DCMAKE_C_FLAGS="-I/sw/include -O3 -ffast-math -g" .. -- The C compiler identification is Clang 5.1.0 -- The CXX compiler identification is Clang 5.1.0 -- Check for working C compiler: /sw/var/lib/fink/path-prefix-clang/cc -- Check for working C compiler: /sw/var/lib/fink/path-prefix-clang/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /sw/var/lib/fink/path-prefix-clang/c++ -- Check for working CXX compiler: /sw/var/lib/fink/path-prefix-clang/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Setting project paths -- Setting lookup paths for headers and libraries -- Computing machien epsilon values -- Floating point epsilon is 2.220446e-16 -- Double precision epsilon is 2.220446e-16 -- Checking for math library -- The math library was found: /usr/lib/libm.dylib -- Checking for the liberty library CMake Warning at CMakeLists.txt:193 (message): Liberty library not found CMake Warning at CMakeLists.txt:215 (message): The nsl library was not found CMake Warning at CMakeLists.txt:237 (message): The socket library was not found CMake Warning at CMakeLists.txt:259 (message): The thread library was not found -- Looking for time -- Looking for time - found -- Looking for rand -- Looking for rand - found -- Looking for srand -- Looking for srand - found CMake Warning at CMakeLists.txt:369 (message): Did not find fetk -- Looking for include file maloc/maloc.h -- Looking for include file maloc/maloc.h - found -- External maloc headers found -- External maloc library was found: /sw/lib/libmaloc.dylib -- Checking for zlib -- Found ZLIB: /usr/lib/libz.dylib (found version "1.2.5") -- The zlib library was found: /usr/lib/libz.dylib -- Inline functions enabled -- Adding apbs_generic -- With source files nosh.c;mgparm.c;femparm.c;pbeparm.c;apolparm.c;vacc.c;valist.c;vatom.c;vpbe.c;vcap.c;vclist.c;vstring.c;vparam.c;vgreen.c -- With external header files nosh.h;mgparm.h;femparm.h;pbeparm.h;apolparm.h;vacc.h;valist.h;vatom.h;vpbe.h;vcap.h;vclist.h;vstring.h;vparam.h;vgreen.h;vmatrix.h;vhal.h -- With internal header files -- With library dependencies /usr/lib/libm.dylib;/sw/lib/libmaloc.dylib;/usr/lib/libz.dylib -- Added apbs_generic -- Adding apbs_pmgc -- With source files buildAd.c;buildBd.c;buildGd.c;buildPd.c;cgd.c;gsd.c;matvecd.c;mgcsd.c;mgdrvd.c;mgsubd.c;mikpckd.c;mlinpckd.c;mypdec.c;newtond.c;newdrvd.c;powerd.c;smoothd.c;mgfasd.c -- With external header files buildAd.h;buildBd.h;buildGd.h;buildPd.h;cgd.h;gsd.h;matvecd.h;mgcsd.h;mgdrvd.h;mgsubd.h;mikpckd.h;mlinpckd.h;mypdec.h;newtond.h;newdrvd.h;powerd.h;smoothd.h;mgfasd.h -- With internal header files -- With library dependencies /usr/lib/libm.dylib;/sw/lib/libmaloc.dylib;/usr/lib/libz.dylib -- Added apbs_pmgc -- Adding apbs_mg -- With source files vgrid.c;vmgrid.c;vopot.c;vpmg.c;vpmgp.c -- With external header files vgrid.h;vmgrid.h;vopot.h;vpmg.h;vpmgp.h -- With internal header files -- With library dependencies /usr/lib/libm.dylib;/sw/lib/libmaloc.dylib;/usr/lib/libz.dylib;apbs_generic;apbs_pmgc -- Added apbs_mg -- Supplemental tools enabled -- Building mesh -- libraries: apbs_generic;apbs_mg;apbs_pmgc -- Building manip -- libraries: apbs_generic;apbs_mg;apbs_pmgc -- Configuring done -- Generating done -- Build files have been written to: /sw/build.build/apbs-1.4.0-1/apbs/build make /sw/bin/cmake -H/sw/build.build/apbs-1.4.0-1/apbs -B/sw/build.build/apbs-1.4.0-1/apbs/build --check-build-system CMakeFiles/Makefile.cmake 0 /sw/bin/cmake -E cmake_progress_start /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles/progress.marks /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/Makefile2 all /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/depend /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/src/generic /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/src/generic /sw/build.build/apbs-1.4.0-1/apbs/build/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake --color= cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/src/pmgc /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/src/pmgc /sw/build.build/apbs-1.4.0-1/apbs/build/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake --color= Scanning dependencies of target apbs_generic /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 4 /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 5 Scanning dependencies of target apbs_pmgc /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 6 /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 7 /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 8 [ 1%] /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 9 [ 5%] [ 5%] /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 10 /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 23 [ 7%] [ 8%] [ 10%] Building C object src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/generic && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_generic_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_generic.dir/nosh.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/generic/nosh.c [ 12%] [ 14%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/generic && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_generic_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_generic.dir/mgparm.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/generic/mgparm.c cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/generic && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_generic_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_generic.dir/femparm.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/generic/femparm.c Building C object src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/generic && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_generic_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_generic.dir/pbeparm.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/generic/pbeparm.c Building C object src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/generic && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_generic_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_generic.dir/apolparm.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/generic/apolparm.c Building C object src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/generic && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_generic_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_generic.dir/vacc.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/generic/vacc.c Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o Building C object src/generic/CMakeFiles/apbs_generic.dir/valist.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/pmgc && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_pmgc_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_pmgc.dir/buildAd.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/pmgc/buildAd.c cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/generic && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_generic_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_generic.dir/valist.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/generic/valist.c /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 11 [ 16%] /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 24 Building C object src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/generic && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_generic_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_generic.dir/vatom.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/generic/vatom.c [ 17%] /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 12 Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/pmgc && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_pmgc_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_pmgc.dir/buildBd.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/pmgc/buildBd.c [ 19%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/generic && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_generic_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_generic.dir/vpbe.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/generic/vpbe.c /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 25 [ 21%] /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 13 Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/pmgc && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_pmgc_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_pmgc.dir/buildGd.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/pmgc/buildGd.c [ 23%] /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 14 Building C object src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/generic && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_generic_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_generic.dir/vcap.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/generic/vcap.c [ 25%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/generic && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_generic_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_generic.dir/vclist.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/generic/vclist.c /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 15 [ 26%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/generic && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_generic_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_generic.dir/vstring.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/generic/vstring.c /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 26 [ 28%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 27 cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/pmgc && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_pmgc_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_pmgc.dir/buildPd.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/pmgc/buildPd.c [ 30%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/pmgc && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_pmgc_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_pmgc.dir/cgd.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/pmgc/cgd.c /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 16 [ 32%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/generic && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_generic_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_generic.dir/vparam.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/generic/vparam.c /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 17 [ 33%] /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 28 Building C object src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/generic && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_generic_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_generic.dir/vgreen.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/generic/vgreen.c [ 35%] /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 29 Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/pmgc && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_pmgc_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_pmgc.dir/gsd.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/pmgc/gsd.c [ 37%] /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 30 Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/pmgc && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_pmgc_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_pmgc.dir/matvecd.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/pmgc/matvecd.c [ 39%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/pmgc && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_pmgc_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_pmgc.dir/mgcsd.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/pmgc/mgcsd.c /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 31 [ 41%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/pmgc && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_pmgc_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/pmgc/mgdrvd.c /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 32 [ 42%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/pmgc && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_pmgc_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_pmgc.dir/mgsubd.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/pmgc/mgsubd.c /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 33 [ 44%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/pmgc && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_pmgc_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_pmgc.dir/mikpckd.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/pmgc/mikpckd.c Linking C shared library ../../../lib/libapbs_generic.dylib cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/generic && /sw/bin/cmake -E cmake_link_script CMakeFiles/apbs_generic.dir/link.txt --verbose=1 /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 34 /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -L/sw/lib -o ../../../lib/libapbs_generic.dylib -install_name /sw/lib/libapbs_generic.dylib CMakeFiles/apbs_generic.dir/nosh.c.o CMakeFiles/apbs_generic.dir/mgparm.c.o CMakeFiles/apbs_generic.dir/femparm.c.o CMakeFiles/apbs_generic.dir/pbeparm.c.o CMakeFiles/apbs_generic.dir/apolparm.c.o CMakeFiles/apbs_generic.dir/vacc.c.o CMakeFiles/apbs_generic.dir/valist.c.o CMakeFiles/apbs_generic.dir/vatom.c.o CMakeFiles/apbs_generic.dir/vpbe.c.o CMakeFiles/apbs_generic.dir/vcap.c.o CMakeFiles/apbs_generic.dir/vclist.c.o CMakeFiles/apbs_generic.dir/vstring.c.o CMakeFiles/apbs_generic.dir/vparam.c.o CMakeFiles/apbs_generic.dir/vgreen.c.o /usr/lib/libm.dylib /sw/lib/libmaloc.dylib /usr/lib/libz.dylib [ 46%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/pmgc && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_pmgc_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/pmgc/mlinpckd.c /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 35 [ 48%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/pmgc && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_pmgc_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_pmgc.dir/mypdec.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/pmgc/mypdec.c /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 36 /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 4 5 6 7 8 9 10 11 12 13 14 15 16 17 [ 50%] [ 50%] Built target apbs_generic /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 37 Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/pmgc && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_pmgc_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_pmgc.dir/newtond.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/pmgc/newtond.c [ 51%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/pmgc && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_pmgc_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_pmgc.dir/newdrvd.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/pmgc/newdrvd.c /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 38 [ 53%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/pmgc && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_pmgc_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_pmgc.dir/powerd.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/pmgc/powerd.c /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 39 [ 55%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/pmgc && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_pmgc_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_pmgc.dir/smoothd.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/pmgc/smoothd.c /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 40 [ 57%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/pmgc && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_pmgc_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_pmgc.dir/mgfasd.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/pmgc/mgfasd.c Linking C shared library ../../../lib/libapbs_pmgc.dylib cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/pmgc && /sw/bin/cmake -E cmake_link_script CMakeFiles/apbs_pmgc.dir/link.txt --verbose=1 /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -L/sw/lib -o ../../../lib/libapbs_pmgc.dylib -install_name /sw/lib/libapbs_pmgc.dylib CMakeFiles/apbs_pmgc.dir/buildAd.c.o CMakeFiles/apbs_pmgc.dir/buildBd.c.o CMakeFiles/apbs_pmgc.dir/buildGd.c.o CMakeFiles/apbs_pmgc.dir/buildPd.c.o CMakeFiles/apbs_pmgc.dir/cgd.c.o CMakeFiles/apbs_pmgc.dir/gsd.c.o CMakeFiles/apbs_pmgc.dir/matvecd.c.o CMakeFiles/apbs_pmgc.dir/mgcsd.c.o CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o CMakeFiles/apbs_pmgc.dir/mgsubd.c.o CMakeFiles/apbs_pmgc.dir/mikpckd.c.o CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o CMakeFiles/apbs_pmgc.dir/mypdec.c.o CMakeFiles/apbs_pmgc.dir/newtond.c.o CMakeFiles/apbs_pmgc.dir/newdrvd.c.o CMakeFiles/apbs_pmgc.dir/powerd.c.o CMakeFiles/apbs_pmgc.dir/smoothd.c.o CMakeFiles/apbs_pmgc.dir/mgfasd.c.o /usr/lib/libm.dylib /sw/lib/libmaloc.dylib /usr/lib/libz.dylib /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 [ 57%] Built target apbs_pmgc /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/src/mg /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/src/mg /sw/build.build/apbs-1.4.0-1/apbs/build/src/mg/CMakeFiles/apbs_mg.dir/DependInfo.cmake --color= Scanning dependencies of target apbs_mg /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/build /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 18 /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 19 /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 20 /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 21 /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 22 [ 58%] [ 60%] [ 62%] [ 64%] [ 66%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o Building C object src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/mg && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_mg_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_mg.dir/vmgrid.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/mg/vmgrid.c Building C object src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/mg && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_mg_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_mg.dir/vgrid.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/mg/vgrid.c cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/mg && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_mg_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_mg.dir/vopot.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/mg/vopot.c Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/mg && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_mg_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_mg.dir/vpmg.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/mg/vpmg.c Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/mg && /sw/var/lib/fink/path-prefix-clang/cc -Dapbs_mg_EXPORTS -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -fPIC -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs_mg.dir/vpmgp.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/mg/vpmgp.c /sw/build.build/apbs-1.4.0-1/apbs/src/mg/vpmg.c:2932:25: warning: enumeration values 'VCM_PERMANENT', 'VCM_INDUCED', and 'VCM_NLINDUCED' not handled in switch [-Wswitch] switch (thee->chargeSrc) { ^ /sw/build.build/apbs-1.4.0-1/apbs/src/mg/vpmg.c:3085:25: warning: enumeration values 'VCM_PERMANENT', 'VCM_INDUCED', and 'VCM_NLINDUCED' not handled in switch [-Wswitch] switch (thee->chargeSrc) ^ /sw/build.build/apbs-1.4.0-1/apbs/src/mg/vpmg.c:3663:17: warning: enumeration values 'VCM_PERMANENT', 'VCM_INDUCED', and 'VCM_NLINDUCED' not handled in switch [-Wswitch] switch (thee->chargeSrc) { ^ 3 warnings generated. Linking C shared library ../../../lib/libapbs_mg.dylib cd /sw/build.build/apbs-1.4.0-1/apbs/build/src/mg && /sw/bin/cmake -E cmake_link_script CMakeFiles/apbs_mg.dir/link.txt --verbose=1 /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -dynamiclib -Wl,-headerpad_max_install_names -L/sw/lib -o ../../../lib/libapbs_mg.dylib -install_name /sw/lib/libapbs_mg.dylib CMakeFiles/apbs_mg.dir/vgrid.c.o CMakeFiles/apbs_mg.dir/vmgrid.c.o CMakeFiles/apbs_mg.dir/vopot.c.o CMakeFiles/apbs_mg.dir/vpmg.c.o CMakeFiles/apbs_mg.dir/vpmgp.c.o /usr/lib/libm.dylib /sw/lib/libmaloc.dylib /usr/lib/libz.dylib ../../../lib/libapbs_generic.dylib ../../../lib/libapbs_pmgc.dylib /usr/lib/libm.dylib /sw/lib/libmaloc.dylib /usr/lib/libz.dylib /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 18 19 20 21 22 [ 66%] Built target apbs_mg /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/depend /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/depend /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/depend /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/depend /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/depend /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/depend /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/depend /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/src /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/src /sw/build.build/apbs-1.4.0-1/apbs/build/src/CMakeFiles/apbs.dir/DependInfo.cmake --color= cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/analysis.dir/DependInfo.cmake --color= cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake --color= cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/del2dx.dir/DependInfo.cmake --color= cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake --color= cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake --color= cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/dxmath.dir/DependInfo.cmake --color= cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/mergedx.dir/DependInfo.cmake --color= Scanning dependencies of target del2dx /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/build /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 44 [ 67%] Building C object tools/mesh/CMakeFiles/del2dx.dir/del2dx.c.o Scanning dependencies of target benchmark Scanning dependencies of target dx2mol cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/del2dx.dir/del2dx.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh/del2dx.c Scanning dependencies of target analysis Scanning dependencies of target dxmath Scanning dependencies of target mergedx Scanning dependencies of target dx2uhbd /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/build /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 41 /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 45 /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 48 /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 47 /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 46 /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 1 Scanning dependencies of target apbs /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/build [ 71%] [ 71%] [ 73%] [ 75%] [ 76%] [ 78%] /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 2 Building C object tools/mesh/CMakeFiles/benchmark.dir/benchmark.c.o Building C object tools/mesh/CMakeFiles/dx2mol.dir/dx2mol.c.o Building C object tools/mesh/CMakeFiles/mergedx.dir/mergedx.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/dx2mol.dir/dx2mol.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh/dx2mol.c cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/benchmark.dir/benchmark.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh/benchmark.c cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/mergedx.dir/mergedx.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh/mergedx.c Building C object tools/mesh/CMakeFiles/dxmath.dir/dxmath.c.o [ 80%] cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/dxmath.dir/dxmath.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh/dxmath.c Building C object tools/mesh/CMakeFiles/analysis.dir/analysis.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/analysis.dir/analysis.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh/analysis.c Building C object tools/mesh/CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh/dx2uhbd.c Building C object src/CMakeFiles/apbs.dir/main.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src && /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs.dir/main.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/main.c Linking C executable ../../../tools/bin/del2dx cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/bin/cmake -E cmake_link_script CMakeFiles/del2dx.dir/link.txt --verbose=1 /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/sw/lib CMakeFiles/del2dx.dir/del2dx.c.o -o ../../../tools/bin/del2dx ../../../lib/libapbs_generic.dylib ../../../lib/libapbs_mg.dylib ../../../lib/libapbs_pmgc.dylib ../../../lib/libapbs_generic.dylib /usr/lib/libm.dylib /sw/lib/libmaloc.dylib /usr/lib/libz.dylib Linking C executable ../../../tools/bin/dx2uhbd cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/bin/cmake -E cmake_link_script CMakeFiles/dx2uhbd.dir/link.txt --verbose=1 Linking C executable ../../../tools/bin/dx2mol cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/bin/cmake -E cmake_link_script CMakeFiles/dx2mol.dir/link.txt --verbose=1 /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 44 /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/sw/lib CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -o ../../../tools/bin/dx2uhbd ../../../lib/libapbs_generic.dylib ../../../lib/libapbs_mg.dylib ../../../lib/libapbs_pmgc.dylib ../../../lib/libapbs_generic.dylib /usr/lib/libm.dylib /sw/lib/libmaloc.dylib /usr/lib/libz.dylib Linking C executable ../../../tools/bin/benchmark cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/bin/cmake -E cmake_link_script CMakeFiles/benchmark.dir/link.txt --verbose=1 /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/sw/lib CMakeFiles/dx2mol.dir/dx2mol.c.o -o ../../../tools/bin/dx2mol ../../../lib/libapbs_generic.dylib ../../../lib/libapbs_mg.dylib ../../../lib/libapbs_pmgc.dylib ../../../lib/libapbs_generic.dylib /usr/lib/libm.dylib /sw/lib/libmaloc.dylib /usr/lib/libz.dylib [ 80%] /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/sw/lib CMakeFiles/benchmark.dir/benchmark.c.o -o ../../../tools/bin/benchmark ../../../lib/libapbs_generic.dylib ../../../lib/libapbs_mg.dylib ../../../lib/libapbs_pmgc.dylib ../../../lib/libapbs_generic.dylib /usr/lib/libm.dylib /sw/lib/libmaloc.dylib /usr/lib/libz.dylib Built target del2dx /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/mergedx2.dir/DependInfo.cmake --color= /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 46 /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 45 [ 80%] Built target dx2uhbd /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/depend /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 41 [ 80%] cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/mgmesh.dir/DependInfo.cmake --color= Scanning dependencies of target mergedx2 Built target dx2mol /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/depend /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/build Linking C executable ../../../tools/bin/analysis cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/bin/cmake -E cmake_link_script CMakeFiles/analysis.dir/link.txt --verbose=1 [ 80%] cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/multivalue.dir/DependInfo.cmake --color= Built target benchmark /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/depend /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 49 cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/similarity.dir/DependInfo.cmake --color= /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/sw/lib CMakeFiles/analysis.dir/analysis.c.o -o ../../../tools/bin/analysis ../../../lib/libapbs_generic.dylib ../../../lib/libapbs_mg.dylib ../../../lib/libapbs_pmgc.dylib ../../../lib/libapbs_generic.dylib /usr/lib/libm.dylib /sw/lib/libmaloc.dylib /usr/lib/libz.dylib [ 82%] Building C object tools/mesh/CMakeFiles/mergedx2.dir/mergedx2.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/mergedx2.dir/mergedx2.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh/mergedx2.c /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 3 Linking C executable ../../../tools/bin/dxmath cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/bin/cmake -E cmake_link_script CMakeFiles/dxmath.dir/link.txt --verbose=1 [ 83%] Scanning dependencies of target mgmesh /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/build /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/sw/lib CMakeFiles/dxmath.dir/dxmath.c.o -o ../../../tools/bin/dxmath ../../../lib/libapbs_generic.dylib ../../../lib/libapbs_mg.dylib ../../../lib/libapbs_pmgc.dylib ../../../lib/libapbs_generic.dylib /usr/lib/libm.dylib /sw/lib/libmaloc.dylib /usr/lib/libz.dylib /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 50 Building C object src/CMakeFiles/apbs.dir/routines.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/src && /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/apbs.dir/routines.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/src/routines.c Scanning dependencies of target multivalue Scanning dependencies of target similarity /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 1 [ 85%] /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/build /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 51 /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 52 [ 85%] Building C object tools/mesh/CMakeFiles/mgmesh.dir/mgmesh.c.o Built target analysis /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/mgmesh.dir/mgmesh.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh/mgmesh.c cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/smooth.dir/DependInfo.cmake --color= [ 87%] [ 89%] Building C object tools/mesh/CMakeFiles/similarity.dir/similarity.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/similarity.dir/similarity.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh/similarity.c Building C object tools/mesh/CMakeFiles/multivalue.dir/multivalue.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/multivalue.dir/multivalue.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh/multivalue.c /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 47 [ 89%] Built target dxmath /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/tensor2dx.dir/DependInfo.cmake --color= Scanning dependencies of target smooth /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/build /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 53 Scanning dependencies of target tensor2dx /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/build /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh/mergedx2.c:115:18: warning: implicit declaration of function 'getopt' is invalid in C99 [-Wimplicit-function-declaration] while ((ch = getopt(argc, argv, "r:b:o:s:h")) != -1) { ^ Linking C executable ../../../tools/bin/mergedx cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/bin/cmake -E cmake_link_script CMakeFiles/mergedx.dir/link.txt --verbose=1 /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 54 [ 91%] [ 92%] /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/sw/lib CMakeFiles/mergedx.dir/mergedx.c.o -o ../../../tools/bin/mergedx ../../../lib/libapbs_generic.dylib ../../../lib/libapbs_mg.dylib ../../../lib/libapbs_pmgc.dylib ../../../lib/libapbs_generic.dylib /usr/lib/libm.dylib /sw/lib/libmaloc.dylib /usr/lib/libz.dylib Building C object tools/mesh/CMakeFiles/smooth.dir/smooth.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/smooth.dir/smooth.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh/smooth.c Building C object tools/mesh/CMakeFiles/tensor2dx.dir/tensor2dx.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/tensor2dx.dir/tensor2dx.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh/tensor2dx.c /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 48 [ 92%] Linking C executable ../../../tools/bin/mgmesh Built target mergedx cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/bin/cmake -E cmake_link_script CMakeFiles/mgmesh.dir/link.txt --verbose=1 /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/DependInfo.cmake --color= /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/sw/lib CMakeFiles/mgmesh.dir/mgmesh.c.o -o ../../../tools/bin/mgmesh ../../../lib/libapbs_generic.dylib ../../../lib/libapbs_mg.dylib ../../../lib/libapbs_pmgc.dylib ../../../lib/libapbs_generic.dylib /usr/lib/libm.dylib /sw/lib/libmaloc.dylib /usr/lib/libz.dylib Linking C executable ../../../tools/bin/multivalue cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/bin/cmake -E cmake_link_script CMakeFiles/multivalue.dir/link.txt --verbose=1 /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/sw/lib CMakeFiles/multivalue.dir/multivalue.c.o -o ../../../tools/bin/multivalue ../../../lib/libapbs_generic.dylib ../../../lib/libapbs_mg.dylib ../../../lib/libapbs_pmgc.dylib ../../../lib/libapbs_generic.dylib /usr/lib/libm.dylib /sw/lib/libmaloc.dylib /usr/lib/libz.dylib Scanning dependencies of target uhbd_asc2bin /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build Linking C executable ../../../tools/bin/tensor2dx cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/bin/cmake -E cmake_link_script CMakeFiles/tensor2dx.dir/link.txt --verbose=1 /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 55 /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 50 [ 94%] /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/sw/lib CMakeFiles/tensor2dx.dir/tensor2dx.c.o -o ../../../tools/bin/tensor2dx ../../../lib/libapbs_generic.dylib ../../../lib/libapbs_mg.dylib ../../../lib/libapbs_pmgc.dylib ../../../lib/libapbs_generic.dylib /usr/lib/libm.dylib /sw/lib/libmaloc.dylib /usr/lib/libz.dylib [ 94%] Built target mgmesh /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/value.dir/DependInfo.cmake --color= Building C object tools/mesh/CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh/uhbd_asc2bin.c /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 51 [ 94%] Built target multivalue /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/manip /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/manip /sw/build.build/apbs-1.4.0-1/apbs/build/tools/manip/CMakeFiles/born.dir/DependInfo.cmake --color= /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 54 [ 94%] Scanning dependencies of target value Built target tensor2dx /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/depend /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/build cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/manip /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/manip /sw/build.build/apbs-1.4.0-1/apbs/build/tools/manip/CMakeFiles/coulomb.dir/DependInfo.cmake --color= /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 56 [ 96%] Scanning dependencies of target born /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/build Building C object tools/mesh/CMakeFiles/value.dir/value.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/value.dir/value.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh/value.c /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 42 [ 98%] Scanning dependencies of target coulomb Linking C executable ../../../tools/bin/smooth cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/bin/cmake -E cmake_link_script CMakeFiles/smooth.dir/link.txt --verbose=1 /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/build Building C object tools/manip/CMakeFiles/born.dir/born.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/manip && /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/born.dir/born.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/tools/manip/born.c /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 43 Linking C executable ../../../tools/bin/similarity cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/bin/cmake -E cmake_link_script CMakeFiles/similarity.dir/link.txt --verbose=1 /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/sw/lib CMakeFiles/smooth.dir/smooth.c.o -o ../../../tools/bin/smooth ../../../lib/libapbs_generic.dylib ../../../lib/libapbs_mg.dylib ../../../lib/libapbs_pmgc.dylib ../../../lib/libapbs_generic.dylib /usr/lib/libm.dylib /sw/lib/libmaloc.dylib /usr/lib/libz.dylib [100%] 1 warning generated. /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/sw/lib CMakeFiles/similarity.dir/similarity.c.o -o ../../../tools/bin/similarity ../../../lib/libapbs_generic.dylib ../../../lib/libapbs_mg.dylib ../../../lib/libapbs_pmgc.dylib ../../../lib/libapbs_generic.dylib /usr/lib/libm.dylib /sw/lib/libmaloc.dylib /usr/lib/libz.dylib Building C object tools/manip/CMakeFiles/coulomb.dir/coulomb.c.o cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/manip && /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -I/sw/build.build/apbs-1.4.0-1/apbs/src -o CMakeFiles/coulomb.dir/coulomb.c.o -c /sw/build.build/apbs-1.4.0-1/apbs/tools/manip/coulomb.c Linking C executable ../../../tools/bin/mergedx2 cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/bin/cmake -E cmake_link_script CMakeFiles/mergedx2.dir/link.txt --verbose=1 /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/sw/lib CMakeFiles/mergedx2.dir/mergedx2.c.o -o ../../../tools/bin/mergedx2 ../../../lib/libapbs_generic.dylib ../../../lib/libapbs_mg.dylib ../../../lib/libapbs_pmgc.dylib ../../../lib/libapbs_generic.dylib /usr/lib/libm.dylib /sw/lib/libmaloc.dylib /usr/lib/libz.dylib Linking C executable ../../../tools/bin/uhbd_asc2bin cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/bin/cmake -E cmake_link_script CMakeFiles/uhbd_asc2bin.dir/link.txt --verbose=1 /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 53 /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/sw/lib CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -o ../../../tools/bin/uhbd_asc2bin ../../../lib/libapbs_generic.dylib ../../../lib/libapbs_mg.dylib ../../../lib/libapbs_pmgc.dylib ../../../lib/libapbs_generic.dylib /usr/lib/libm.dylib /sw/lib/libmaloc.dylib /usr/lib/libz.dylib [100%] Built target smooth /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 52 [100%] Built target similarity /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 49 [100%] Built target mergedx2 Linking C executable ../../../tools/bin/value cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh && /sw/bin/cmake -E cmake_link_script CMakeFiles/value.dir/link.txt --verbose=1 /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 55 /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/sw/lib CMakeFiles/value.dir/value.c.o -o ../../../tools/bin/value ../../../lib/libapbs_generic.dylib ../../../lib/libapbs_mg.dylib ../../../lib/libapbs_pmgc.dylib ../../../lib/libapbs_generic.dylib /usr/lib/libm.dylib /sw/lib/libmaloc.dylib /usr/lib/libz.dylib [100%] Built target uhbd_asc2bin /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 56 Linking C executable ../../../tools/bin/born [100%] cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/manip && /sw/bin/cmake -E cmake_link_script CMakeFiles/born.dir/link.txt --verbose=1 Built target value /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/sw/lib CMakeFiles/born.dir/born.c.o -o ../../../tools/bin/born ../../../lib/libapbs_generic.dylib ../../../lib/libapbs_mg.dylib ../../../lib/libapbs_pmgc.dylib ../../../lib/libapbs_generic.dylib /usr/lib/libm.dylib /sw/lib/libmaloc.dylib /usr/lib/libz.dylib Linking C executable ../../../tools/bin/coulomb cd /sw/build.build/apbs-1.4.0-1/apbs/build/tools/manip && /sw/bin/cmake -E cmake_link_script CMakeFiles/coulomb.dir/link.txt --verbose=1 /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/sw/lib CMakeFiles/coulomb.dir/coulomb.c.o -o ../../../tools/bin/coulomb ../../../lib/libapbs_generic.dylib ../../../lib/libapbs_mg.dylib ../../../lib/libapbs_pmgc.dylib ../../../lib/libapbs_generic.dylib /usr/lib/libm.dylib /sw/lib/libmaloc.dylib /usr/lib/libz.dylib /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 42 [100%] Built target born /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 43 [100%] Built target coulomb Linking C executable ../../bin/apbs cd /sw/build.build/apbs-1.4.0-1/apbs/build/src && /sw/bin/cmake -E cmake_link_script CMakeFiles/apbs.dir/link.txt --verbose=1 /sw/var/lib/fink/path-prefix-clang/cc -I/sw/include -O3 -ffast-math -g -O3 -DNDEBUG -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/sw/lib CMakeFiles/apbs.dir/main.c.o CMakeFiles/apbs.dir/routines.c.o -o ../../bin/apbs /usr/lib/libm.dylib /sw/lib/libmaloc.dylib /usr/lib/libz.dylib ../../lib/libapbs_generic.dylib ../../lib/libapbs_pmgc.dylib ../../lib/libapbs_mg.dylib ../../lib/libapbs_generic.dylib ../../lib/libapbs_pmgc.dylib /usr/lib/libm.dylib /sw/lib/libmaloc.dylib /usr/lib/libz.dylib /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 2 3 [100%] Built target apbs /sw/bin/cmake -E cmake_progress_start /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 0 /bin/rm -rf /sw/build.build/root-apbs-1.4.0-1 /bin/mkdir -p /sw/build.build/root-apbs-1.4.0-1/sw /bin/mkdir -p /sw/build.build/root-apbs-1.4.0-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-apbs-1.4.0-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.cr8zS /tmp/fink.NHFO9 # system-wide environment settings for zsh(1) if [ -x /usr/libexec/path_helper ]; then eval `/usr/libexec/path_helper -s` fi #!/bin/zsh -efv cd build make install DESTDIR=/sw/build.build/root-apbs-1.4.0-1 /sw/bin/cmake -H/sw/build.build/apbs-1.4.0-1/apbs -B/sw/build.build/apbs-1.4.0-1/apbs/build --check-build-system CMakeFiles/Makefile.cmake 0 /sw/bin/cmake -E cmake_progress_start /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles/progress.marks /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/Makefile2 all /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/src/pmgc /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/src/pmgc /sw/build.build/apbs-1.4.0-1/apbs/build/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake --color= /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build make[2]: Nothing to be done for `src/pmgc/CMakeFiles/apbs_pmgc.dir/build'. /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 [ 32%] Built target apbs_pmgc /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/src/generic /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/src/generic /sw/build.build/apbs-1.4.0-1/apbs/build/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake --color= /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build make[2]: Nothing to be done for `src/generic/CMakeFiles/apbs_generic.dir/build'. /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 4 5 6 7 8 9 10 11 12 13 14 15 16 17 [ 57%] Built target apbs_generic /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/src/mg /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/src/mg /sw/build.build/apbs-1.4.0-1/apbs/build/src/mg/CMakeFiles/apbs_mg.dir/DependInfo.cmake --color= /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/build make[2]: Nothing to be done for `src/mg/CMakeFiles/apbs_mg.dir/build'. /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 18 19 20 21 22 [ 66%] Built target apbs_mg /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/src /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/src /sw/build.build/apbs-1.4.0-1/apbs/build/src/CMakeFiles/apbs.dir/DependInfo.cmake --color= /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/build make[2]: Nothing to be done for `src/CMakeFiles/apbs.dir/build'. /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 2 3 [ 69%] Built target apbs /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/analysis.dir/DependInfo.cmake --color= /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/build make[2]: Nothing to be done for `tools/mesh/CMakeFiles/analysis.dir/build'. /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 1 [ 71%] Built target analysis /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake --color= /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/build make[2]: Nothing to be done for `tools/mesh/CMakeFiles/benchmark.dir/build'. /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 41 [ 73%] Built target benchmark /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/del2dx.dir/DependInfo.cmake --color= /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/build make[2]: Nothing to be done for `tools/mesh/CMakeFiles/del2dx.dir/build'. /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 44 [ 75%] Built target del2dx /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake --color= /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/build make[2]: Nothing to be done for `tools/mesh/CMakeFiles/dx2mol.dir/build'. /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 45 [ 76%] Built target dx2mol /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake --color= /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/build make[2]: Nothing to be done for `tools/mesh/CMakeFiles/dx2uhbd.dir/build'. /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 46 [ 78%] Built target dx2uhbd /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/dxmath.dir/DependInfo.cmake --color= /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/build make[2]: Nothing to be done for `tools/mesh/CMakeFiles/dxmath.dir/build'. /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 47 [ 80%] Built target dxmath /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/mergedx.dir/DependInfo.cmake --color= /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/build make[2]: Nothing to be done for `tools/mesh/CMakeFiles/mergedx.dir/build'. /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 48 [ 82%] Built target mergedx /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/mergedx2.dir/DependInfo.cmake --color= /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/build make[2]: Nothing to be done for `tools/mesh/CMakeFiles/mergedx2.dir/build'. /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 49 [ 83%] Built target mergedx2 /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/mgmesh.dir/DependInfo.cmake --color= /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/build make[2]: Nothing to be done for `tools/mesh/CMakeFiles/mgmesh.dir/build'. /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 50 [ 85%] Built target mgmesh /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/multivalue.dir/DependInfo.cmake --color= /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/build make[2]: Nothing to be done for `tools/mesh/CMakeFiles/multivalue.dir/build'. /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 51 [ 87%] Built target multivalue /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/similarity.dir/DependInfo.cmake --color= /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/build make[2]: Nothing to be done for `tools/mesh/CMakeFiles/similarity.dir/build'. /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 52 [ 89%] Built target similarity /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/smooth.dir/DependInfo.cmake --color= /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/build make[2]: Nothing to be done for `tools/mesh/CMakeFiles/smooth.dir/build'. /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 53 [ 91%] Built target smooth /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/tensor2dx.dir/DependInfo.cmake --color= /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/build make[2]: Nothing to be done for `tools/mesh/CMakeFiles/tensor2dx.dir/build'. /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 54 [ 92%] Built target tensor2dx /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/DependInfo.cmake --color= /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build make[2]: Nothing to be done for `tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build'. /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 55 [ 94%] Built target uhbd_asc2bin /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh /sw/build.build/apbs-1.4.0-1/apbs/build/tools/mesh/CMakeFiles/value.dir/DependInfo.cmake --color= /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/build make[2]: Nothing to be done for `tools/mesh/CMakeFiles/value.dir/build'. /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 56 [ 96%] Built target value /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/manip /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/manip /sw/build.build/apbs-1.4.0-1/apbs/build/tools/manip/CMakeFiles/born.dir/DependInfo.cmake --color= /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/build make[2]: Nothing to be done for `tools/manip/CMakeFiles/born.dir/build'. /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 42 [ 98%] Built target born /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/depend cd /sw/build.build/apbs-1.4.0-1/apbs/build && /sw/bin/cmake -E cmake_depends "Unix Makefiles" /sw/build.build/apbs-1.4.0-1/apbs /sw/build.build/apbs-1.4.0-1/apbs/tools/manip /sw/build.build/apbs-1.4.0-1/apbs/build /sw/build.build/apbs-1.4.0-1/apbs/build/tools/manip /sw/build.build/apbs-1.4.0-1/apbs/build/tools/manip/CMakeFiles/coulomb.dir/DependInfo.cmake --color= /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/build make[2]: Nothing to be done for `tools/manip/CMakeFiles/coulomb.dir/build'. /sw/bin/cmake -E cmake_progress_report /sw/build.build/apbs-1.4.0-1/apbs/build/CMakeFiles 43 [100%] Built target coulomb /sw/bin/cmake -E cmake_progress_start 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Install the project... /sw/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/doc -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/doc/CMakeLists.txt -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/doc/index.html -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/doc/license -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/doc/license/license.html -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/doc/license/LICENSE.txt -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/doc/programmer -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/doc/programmer/Doxyfile.in -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/doc/programmer/mainpage.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/doc/README -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/examples -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/examples/actin-dimer -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/examples/actin-dimer/apbs-mol-auto.in -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/examples/actin-dimer/apbs-mol-parallel.in -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/examples/actin-dimer/apbs-smol-auto.in -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/examples/actin-dimer/apbs-smol-parallel.in -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/examples/actin-dimer/complex.pqr -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/examples/actin-dimer/mesh.m -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/examples/actin-dimer/mol1.pqr -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/examples/actin-dimer/mol2.pqr -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/examples/actin-dimer/README.html -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/examples/actin-dimer/UHBD -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/examples/actin-dimer/UHBD/aheall-atom.charmm.dat -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/examples/actin-dimer/UHBD/nuc.3-4.full.log -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/examples/actin-dimer/UHBD/nuc.3-4.inp -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/examples/actin-dimer/UHBD/prot3.pdb -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/examples/actin-dimer/UHBD/prot4.pdb -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/examples/actin-dimer/UHBD/single.inp -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/examples/actin-dimer/UHBD/srsrf.dot -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/examples/alkanes -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/examples/alkanes/2-methylbutane.pdb -- Installing: 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/sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/generic/pbeparm.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/generic/apolparm.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/generic/vacc.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/generic/valist.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/generic/vatom.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/generic/vpbe.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/generic/vcap.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/generic/vclist.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/generic/vstring.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/generic/vparam.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/generic/vgreen.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/generic/vmatrix.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/generic/vhal.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/lib/libapbs_generic.dylib -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/pmgc/buildAd.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/pmgc/buildBd.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/pmgc/buildGd.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/pmgc/buildPd.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/pmgc/cgd.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/pmgc/gsd.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/pmgc/matvecd.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/pmgc/mgcsd.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/pmgc/mgdrvd.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/pmgc/mgsubd.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/pmgc/mikpckd.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/pmgc/mlinpckd.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/pmgc/mypdec.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/pmgc/newtond.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/pmgc/newdrvd.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/pmgc/powerd.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/pmgc/smoothd.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/pmgc/mgfasd.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/lib/libapbs_pmgc.dylib -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/mg/vgrid.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/mg/vmgrid.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/mg/vopot.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/mg/vpmg.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/include/apbs/mg/vpmgp.h -- Installing: /sw/build.build/root-apbs-1.4.0-1/sw/lib/libapbs_mg.dylib perl -pi -e "s|env python|env /sw/bin/python2.7|g" /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/tools/manip/psize.py perl -pi -e "s|env python|env /sw/bin/python2.7|g" /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/examples/protein-rna/fit.py for f in apbs_check_forces apbs_check_results apbs_logger apbs_tester; do perl -pi -e "s|env python|env /sw/bin/python2.7|g" /sw/build.build/root-apbs-1.4.0-1/sw/share/apbs/tests/$f.py done sudo -u fink-bld [ENV] sh -c /tmp/fink.hpt99 /usr/bin/install -d -m 755 /sw/build.build/root-apbs-1.4.0-1/sw/etc/profile.d echo "setenv APBS_PSIZE '/sw/share/apbs/tools/manip'" >> /sw/build.build/root-apbs-1.4.0-1/sw/etc/profile.d/apbs.csh.env echo "export APBS_PSIZE='/sw/share/apbs/tools/manip'" >> /sw/build.build/root-apbs-1.4.0-1/sw/etc/profile.d/apbs.sh.env /usr/bin/touch /sw/build.build/root-apbs-1.4.0-1/sw/etc/profile.d/apbs.csh /usr/bin/touch /sw/build.build/root-apbs-1.4.0-1/sw/etc/profile.d/apbs.sh /bin/cat /sw/build.build/root-apbs-1.4.0-1/sw/etc/profile.d/apbs.csh >> /sw/build.build/root-apbs-1.4.0-1/sw/etc/profile.d/apbs.csh.env /bin/cat /sw/build.build/root-apbs-1.4.0-1/sw/etc/profile.d/apbs.sh >> /sw/build.build/root-apbs-1.4.0-1/sw/etc/profile.d/apbs.sh.env /bin/mv -f /sw/build.build/root-apbs-1.4.0-1/sw/etc/profile.d/apbs.csh.env /sw/build.build/root-apbs-1.4.0-1/sw/etc/profile.d/apbs.csh /bin/mv -f /sw/build.build/root-apbs-1.4.0-1/sw/etc/profile.d/apbs.sh.env /sw/build.build/root-apbs-1.4.0-1/sw/etc/profile.d/apbs.sh /bin/chmod 755 /sw/build.build/root-apbs-1.4.0-1/sw/etc/profile.d/apbs.* /bin/rm -f /sw/build.build/root-apbs-1.4.0-1/sw/info/dir /sw/build.build/root-apbs-1.4.0-1/sw/info/dir.old /sw/build.build/root-apbs-1.4.0-1/sw/share/info/dir /sw/build.build/root-apbs-1.4.0-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-apbs-1.4.0-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci dpkg-deb: building package `apbs' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/apbs_1.4.0-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-apbs-1.4.0-1 (Reading database ... 12961 files and directories currently installed.) Removing fink-buildlock-apbs-1.4.0-1 ...