printf ' ' | fink --no-use-binary-dist --yes rebuild bioconductor-impute-r31 2>&1 The package 'bioconductor-impute-r31' will be built without being installed. Reading build dependency for bioconductor-impute-r31-1.38.1-1... Reading dependency for bioconductor-impute-r31-1.38.1-1... Reading build conflict for bioconductor-impute-r31-1.38.1-1... The following package will be rebuilt: bioconductor-impute-r31 Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-bioconductor-impute-r31-1.38.1-1 /sw/build.build dpkg-deb: building package `fink-buildlock-bioconductor-impute-r31-1.38.1-1' in `/sw/build.build/fink-buildlock-bioconductor-impute-r31-1.38.1-1_2014.07.27-08.34.08_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-bioconductor-impute-r31-1.38.1-1_2014.07.27-08.34.08_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-bioconductor-impute-r31-1.38.1-1. (Reading database ... 9540 files and directories currently installed.) Unpacking fink-buildlock-bioconductor-impute-r31-1.38.1-1 (from .../fink-buildlock-bioconductor-impute-r31-1.38.1-1_2014.07.27-08.34.08_darwin-x86_64.deb) ... Setting up fink-buildlock-bioconductor-impute-r31-1.38.1-1 (2014.07.27-08.34.08) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.S__4K env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/impute_1.16.0.tar.gz impute/ impute/DESCRIPTION impute/man/ impute/man/impute.knn.Rd impute/man/khanmiss.Rd impute/info impute/R/ impute/R/allknnimp.R impute/src/ impute/src/knnimpute.f impute/NAMESPACE impute/data/ impute/data/khanmiss.rda sudo -u fink-bld [ENV] sh -c /tmp/fink.zBBKB /tmp/fink._rs7O #!/bin/bash -ev export TMPDIR=/sw/build.build/bioconductor-impute-r31-1.38.1-1/impute/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R pushd .. /sw/build.build/bioconductor-impute-r31-1.38.1-1 /sw/build.build/bioconductor-impute-r31-1.38.1-1/impute $BIN_R --verbose CMD build --no-build-vignettes impute * checking for file 'impute/DESCRIPTION' ... OK * preparing 'impute': * checking DESCRIPTION meta-information ... OK * cleaning src * checking for LF line-endings in source and make files * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added * re-saving image files * building 'impute_1.16.0.tar.gz' /bin/rm -rf /sw/build.build/root-bioconductor-impute-r31-1.38.1-1 /bin/mkdir -p /sw/build.build/root-bioconductor-impute-r31-1.38.1-1/sw /bin/mkdir -p /sw/build.build/root-bioconductor-impute-r31-1.38.1-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-bioconductor-impute-r31-1.38.1-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.erA5p /tmp/fink.axD5I #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R mkdir -p /sw/build.build/root-bioconductor-impute-r31-1.38.1-1/sw/lib/R/3.1/site-library pushd /sw/build.build/bioconductor-impute-r31-1.38.1-1/impute/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-bioconductor-impute-r31-1.38.1-1/sw/lib/R/3.1/site-library impute /sw/build.build/bioconductor-impute-r31-1.38.1-1 /sw/build.build/bioconductor-impute-r31-1.38.1-1/impute * installing *source* package 'impute' ... ** libs /sw/bin/gfortran-fsf-4.9 -fPIC -g -O3 -c knnimpute.f -o knnimpute.o make: /sw/bin/gfortran-fsf-4.9: No such file or directory make: *** [knnimpute.o] Error 1 ERROR: compilation failed for package 'impute' * removing '/sw/build.build/root-bioconductor-impute-r31-1.38.1-1/sw/lib/R/3.1/site-library/impute' ### execution of /tmp/fink.axD5I failed, exit code 1 ### execution of /tmp/fink.erA5p failed, exit code 1 Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-bioconductor-impute-r31-1.38.1-1 (Reading database ... 9541 files and directories currently installed.) Removing fink-buildlock-bioconductor-impute-r31-1.38.1-1 ... Failed: phase installing: bioconductor-impute-r31-1.38.1-1 failed Before reporting any errors, please run "fink selfupdate" and try again. Also try using "fink configure" to set your maximum build jobs to 1 and attempt to build the package again. If you continue to have issues, please check to see if the FAQ on Fink's website solves the problem. If not, ask on one (not both, please) of these mailing lists: The Fink Users List The Fink Beginners List , with a carbon copy to the maintainer: Jack Howarth Note that this is preferable to emailing just the maintainer directly, since most fink package maintainers do not have access to all possible hardware and software configurations. Please try to include the complete error message in your report. This generally consists of a compiler line starting with e.g. "gcc" or "g++" followed by the actual error output from the compiler. Also include the following system information: Package manager version: 0.37.0 Distribution version: selfupdate-cvs Thu Jul 24 20:26:24 2014, 10.9, x86_64 Trees: local/main stable/main Xcode.app: 5.1.1 Xcode command-line tools: 6.0.0.0.1.1405597879 Max. Fink build jobs: 8