printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild bioconductor-rgraphviz-r30 2>&1 The package 'bioconductor-rgraphviz-r30' will be built without being installed. Reading build dependency for bioconductor-rgraphviz-r30-2.8.1-1... Reading dependency for bioconductor-rgraphviz-r30-2.8.1-1... Reading build conflict for bioconductor-rgraphviz-r30-2.8.1-1... The package 'r-base30-dev' will be installed. Reading dependency for r-base30-dev-3.0.3-8... Reading runtime dependency for r-base30-dev-3.0.3-8... The package 'graphviz-dev' will be installed. Reading dependency for graphviz-dev-2.26.3-8... Reading runtime dependency for graphviz-dev-2.26.3-8... The package 'libgettext8-dev' will be installed. Reading dependency for libgettext8-dev-0.18.3.1-2... Reading runtime dependency for libgettext8-dev-0.18.3.1-2... The package 'r-base30' will be installed. Reading dependency for r-base30-3.0.3-8... Reading runtime dependency for r-base30-3.0.3-8... The package 'bioconductor-biobase-r30' will be installed. Reading dependency for bioconductor-biobase-r30-2.22.0-1... Reading runtime dependency for bioconductor-biobase-r30-2.22.0-1... The package 'bioconductor-graph-r30' will be installed. Reading dependency for bioconductor-graph-r30-1.42.0-1... Reading runtime dependency for bioconductor-graph-r30-1.42.0-1... The package 'graphviz-shlibs' will be installed. Reading dependency for graphviz-shlibs-2.26.3-8... Reading runtime dependency for graphviz-shlibs-2.26.3-8... The package 'r-base30-shlibs' will be installed. Reading dependency for r-base30-shlibs-3.0.3-8... Reading runtime dependency for r-base30-shlibs-3.0.3-8... The package 'gettext-bin' will be installed. Reading dependency for gettext-bin-0.18.3.1-2... Reading runtime dependency for gettext-bin-0.18.3.1-2... The package 'flag-sort' will be installed. Reading dependency for flag-sort-0.5-1... Reading runtime dependency for flag-sort-0.5-1... The package 'bioconductor-biocgenerics-r30' will be installed. Reading dependency for bioconductor-biocgenerics-r30-0.10.0-1... Reading runtime dependency for bioconductor-biocgenerics-r30-0.10.0-1... The package 'glib2-shlibs' will be installed. Reading dependency for glib2-shlibs-2.22.4-8... Reading runtime dependency for glib2-shlibs-2.22.4-8... The package 'gtkglext1-shlibs' will be installed. Reading dependency for gtkglext1-shlibs-1.2.0-2... Reading runtime dependency for gtkglext1-shlibs-1.2.0-2... The package 'guile18-shlibs' will be installed. Reading dependency for guile18-shlibs-1.8.8-7... Reading runtime dependency for guile18-shlibs-1.8.8-7... The package 'fontconfig2-shlibs' will be installed. Reading dependency for fontconfig2-shlibs-2.10.2-1... Reading runtime dependency for fontconfig2-shlibs-2.10.2-1... The package 'freeglut-shlibs' will be installed. Reading dependency for freeglut-shlibs-2.8.1-1... Reading runtime dependency for freeglut-shlibs-2.8.1-1... The package 'freetype219-shlibs' will be installed. Reading dependency for freetype219-shlibs-2.4.12-1... Reading runtime dependency for freetype219-shlibs-2.4.12-1... The package 'giflib-shlibs' will be installed. Reading dependency for giflib-shlibs-4.1.6-103... Reading runtime dependency for giflib-shlibs-4.1.6-103... The package 'glitz-shlibs' will be installed. Reading dependency for glitz-shlibs-0.5.6-33... Reading runtime dependency for glitz-shlibs-0.5.6-33... The package 'gts75-shlibs' will be installed. Reading dependency for gts75-shlibs-0.7.6-3... Reading runtime dependency for gts75-shlibs-0.7.6-3... The package 'libjpeg9-shlibs' will be installed. Reading dependency for libjpeg9-shlibs-9a-1... Reading runtime dependency for libjpeg9-shlibs-9a-1... The package 'librsvg2-shlibs' will be installed. Reading dependency for librsvg2-shlibs-2.26.3-1... Reading runtime dependency for librsvg2-shlibs-2.26.3-1... The package 'libgsf1.114-shlibs' will be installed. 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Reading runtime dependency for gcc49-shlibs-4.9.1-1000... The package 'libicu48-shlibs' will be installed. Reading dependency for libicu48-shlibs-4.8.1.1-2... Reading runtime dependency for libicu48-shlibs-4.8.1.1-2... The package 'liblzma5-shlibs' will be installed. Reading dependency for liblzma5-shlibs-5.0.5-2... Reading runtime dependency for liblzma5-shlibs-5.0.5-2... The package 'libpng16-shlibs' will be installed. Reading dependency for libpng16-shlibs-1.6.12-1... Reading runtime dependency for libpng16-shlibs-1.6.12-1... The package 'libtiff5-shlibs' will be installed. Reading dependency for libtiff5-shlibs-4.0.3-5... Reading runtime dependency for libtiff5-shlibs-4.0.3-5... The package 'pango1-xft2-ft219-shlibs' will be installed. Reading dependency for pango1-xft2-ft219-shlibs-1.24.5-9... Reading runtime dependency for pango1-xft2-ft219-shlibs-1.24.5-9... The package 'libpcre1-shlibs' will be installed. Reading dependency for libpcre1-shlibs-8.35-1... Reading runtime dependency for libpcre1-shlibs-8.35-1... The package 'readline6-shlibs' will be installed. Reading dependency for readline6-shlibs-6.3.6-1... Reading runtime dependency for readline6-shlibs-6.3.6-1... The package 'tcltk' will be installed. Reading dependency for tcltk-8.6.1-104... Reading runtime dependency for tcltk-8.6.1-104... The package 'xdg-base' will be installed. Reading dependency for xdg-base-0.8-2... Reading runtime dependency for xdg-base-0.8-2... The package 'atk1-shlibs' will be installed. Reading dependency for atk1-shlibs-1.32.0-1... Reading runtime dependency for atk1-shlibs-1.32.0-1... The package 'gtk+2-shlibs' will be installed. Reading dependency for gtk+2-shlibs-2.18.9-11... Reading runtime dependency for gtk+2-shlibs-2.18.9-11... The package 'fontconfig-config' will be installed. Reading dependency for fontconfig-config-2.10.2-1... Reading runtime dependency for fontconfig-config-2.10.2-1... The package 'expat1-shlibs' will be installed. Reading dependency for expat1-shlibs-2.1.0-1... Reading runtime dependency for expat1-shlibs-2.1.0-1... The package 'libcroco3-shlibs' will be installed. Reading dependency for libcroco3-shlibs-0.6.8-1... Reading runtime dependency for libcroco3-shlibs-0.6.8-1... The package 'libxml2-shlibs' will be installed. Reading dependency for libxml2-shlibs-2.9.1-3... Reading runtime dependency for libxml2-shlibs-2.9.1-3... The package 'pixman-shlibs' will be installed. Reading dependency for pixman-shlibs-0.32.4-1... Reading runtime dependency for pixman-shlibs-0.32.4-1... The package 'libjbig-shlibs' will be installed. Reading dependency for libjbig-shlibs-2.0-1... Reading runtime dependency for libjbig-shlibs-2.0-1... The package 'libthai-shlibs' will be installed. Reading dependency for libthai-shlibs-0.1.20-1... Reading runtime dependency for libthai-shlibs-0.1.20-1... The package 'xft2-shlibs' will be installed. Reading dependency for xft2-shlibs-2.2.0-3... Reading runtime dependency for xft2-shlibs-2.2.0-3... The package 'tcltk-shlibs' will be installed. Reading dependency for tcltk-shlibs-8.6.1-104... Reading runtime dependency for tcltk-shlibs-8.6.1-104... The package 'libjasper.1-shlibs' will be installed. Reading dependency for libjasper.1-shlibs-1.900.1-5... Reading runtime dependency for libjasper.1-shlibs-1.900.1-5... The package 'shared-mime-info' will be installed. Reading dependency for shared-mime-info-1.3-1... Reading runtime dependency for shared-mime-info-1.3-1... The package 'libdatrie1-shlibs' will be installed. Reading dependency for libdatrie1-shlibs-0.2.8-2... Reading runtime dependency for libdatrie1-shlibs-0.2.8-2... The package 'libthai' will be installed. Reading dependency for libthai-0.1.20-1... Reading runtime dependency for libthai-0.1.20-1... The package 'pkgconfig' will be installed. Reading dependency for pkgconfig-0.28-1... Reading runtime dependency for pkgconfig-0.28-1... The following package will be rebuilt: bioconductor-rgraphviz-r30 The following 54 additional packages will be installed: atk1-shlibs bioconductor-biobase-r30 bioconductor-biocgenerics-r30 bioconductor-graph-r30 cairo-shlibs expat1-shlibs flag-sort fontconfig-config fontconfig2-shlibs freeglut-shlibs freetype219-shlibs gcc49-shlibs gd2-shlibs gettext-bin giflib-shlibs glib2-shlibs glitz-shlibs graphviz-dev graphviz-shlibs gtk+2-shlibs gtkglext1-shlibs gts75-shlibs guile18-shlibs libcroco3-shlibs libdatrie1-shlibs libgettext8-dev libgsf1.114-shlibs libicu48-shlibs libjasper.1-shlibs libjbig-shlibs libjpeg9-shlibs liblzma5-shlibs libming1-shlibs libpcre1-shlibs libpng16-shlibs librsvg2-shlibs libthai libthai-shlibs libtiff5-shlibs libtool2-shlibs libxml2-shlibs lua51-shlibs pango1-xft2-ft219-shlibs pixman-shlibs pkgconfig r-base30 r-base30-dev r-base30-shlibs readline6-shlibs shared-mime-info tcltk tcltk-shlibs xdg-base xft2-shlibs Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/Rgraphviz_2.8.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 7277k 0 1203 0 0 765 0 2:42:21 0:00:01 2:42:20 765 5 7277k 5 371k 0 0 177k 0 0:00:40 0:00:02 0:00:38 177k 14 7277k 14 1027k 0 0 335k 0 0:00:21 0:00:03 0:00:18 335k 27 7277k 27 2004k 0 0 494k 0 0:00:14 0:00:04 0:00:10 494k 33 7277k 33 2431k 0 0 480k 0 0:00:15 0:00:05 0:00:10 494k 44 7277k 44 3264k 0 0 539k 0 0:00:13 0:00:06 0:00:07 729k 60 7277k 60 4424k 0 0 626k 0 0:00:11 0:00:07 0:00:04 815k 77 7277k 77 5646k 0 0 700k 0 0:00:10 0:00:08 0:00:02 924k 82 7277k 82 6012k 0 0 664k 0 0:00:10 0:00:09 0:00:01 801k 98 7277k 98 7193k 0 0 715k 0 0:00:10 0:00:10 --:--:-- 953k 100 7277k 100 7277k 0 0 719k 0 0:00:10 0:00:10 --:--:-- 986k Reading buildlock packages... 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Rgraphviz/src/graphviz/lib/pack/pack.3.pdf Rgraphviz/src/graphviz/lib/pack/pack.c Rgraphviz/src/graphviz/lib/pack/pack.h Rgraphviz/src/graphviz/lib/pack/ptest.c Rgraphviz/src/graphviz/lib/patchwork/ Rgraphviz/src/graphviz/lib/patchwork/Makefile.am Rgraphviz/src/graphviz/lib/patchwork/Makefile.in Rgraphviz/src/graphviz/lib/patchwork/Makefile.old Rgraphviz/src/graphviz/lib/patchwork/gvpatchwork.vcproj Rgraphviz/src/graphviz/lib/patchwork/patchwork.c Rgraphviz/src/graphviz/lib/patchwork/patchwork.h Rgraphviz/src/graphviz/lib/patchwork/patchworkinit.c Rgraphviz/src/graphviz/lib/patchwork/tree_map.c Rgraphviz/src/graphviz/lib/patchwork/tree_map.h Rgraphviz/src/graphviz/lib/pathplan/ Rgraphviz/src/graphviz/lib/pathplan/Makefile.am Rgraphviz/src/graphviz/lib/pathplan/Makefile.in Rgraphviz/src/graphviz/lib/pathplan/Makefile.old Rgraphviz/src/graphviz/lib/pathplan/Pathplan.vcproj Rgraphviz/src/graphviz/lib/pathplan/README Rgraphviz/src/graphviz/lib/pathplan/cvt.c Rgraphviz/src/graphviz/lib/pathplan/inpoly.c Rgraphviz/src/graphviz/lib/pathplan/libpathplan.pc.in Rgraphviz/src/graphviz/lib/pathplan/path.lefty Rgraphviz/src/graphviz/lib/pathplan/pathgeom.h Rgraphviz/src/graphviz/lib/pathplan/pathplan.3 Rgraphviz/src/graphviz/lib/pathplan/pathplan.3.pdf Rgraphviz/src/graphviz/lib/pathplan/pathplan.def Rgraphviz/src/graphviz/lib/pathplan/pathplan.h Rgraphviz/src/graphviz/lib/pathplan/pathutil.h Rgraphviz/src/graphviz/lib/pathplan/route.c Rgraphviz/src/graphviz/lib/pathplan/shortest.c Rgraphviz/src/graphviz/lib/pathplan/shortestpth.c Rgraphviz/src/graphviz/lib/pathplan/solvers.c Rgraphviz/src/graphviz/lib/pathplan/solvers.h Rgraphviz/src/graphviz/lib/pathplan/tri.h Rgraphviz/src/graphviz/lib/pathplan/triang.c Rgraphviz/src/graphviz/lib/pathplan/util.c Rgraphviz/src/graphviz/lib/pathplan/vis.h Rgraphviz/src/graphviz/lib/pathplan/visibility.c Rgraphviz/src/graphviz/lib/pathplan/vispath.h Rgraphviz/src/graphviz/lib/rbtree/ Rgraphviz/src/graphviz/lib/rbtree/CHANGES Rgraphviz/src/graphviz/lib/rbtree/LICENSE Rgraphviz/src/graphviz/lib/rbtree/Makefile.am Rgraphviz/src/graphviz/lib/rbtree/Makefile.in Rgraphviz/src/graphviz/lib/rbtree/makefile.txt Rgraphviz/src/graphviz/lib/rbtree/misc.c Rgraphviz/src/graphviz/lib/rbtree/misc.h Rgraphviz/src/graphviz/lib/rbtree/rbtree.vcproj Rgraphviz/src/graphviz/lib/rbtree/red_black_tree.c Rgraphviz/src/graphviz/lib/rbtree/red_black_tree.h Rgraphviz/src/graphviz/lib/rbtree/simple_test.sh Rgraphviz/src/graphviz/lib/rbtree/stack.c Rgraphviz/src/graphviz/lib/rbtree/stack.h Rgraphviz/src/graphviz/lib/rbtree/test_red_black_tree.c Rgraphviz/src/graphviz/lib/sfdpgen/ Rgraphviz/src/graphviz/lib/sfdpgen/LinkedList.c Rgraphviz/src/graphviz/lib/sfdpgen/LinkedList.h Rgraphviz/src/graphviz/lib/sfdpgen/Makefile.am Rgraphviz/src/graphviz/lib/sfdpgen/Makefile.in Rgraphviz/src/graphviz/lib/sfdpgen/Makefile.old Rgraphviz/src/graphviz/lib/sfdpgen/Multilevel.c Rgraphviz/src/graphviz/lib/sfdpgen/Multilevel.h Rgraphviz/src/graphviz/lib/sfdpgen/PriorityQueue.c Rgraphviz/src/graphviz/lib/sfdpgen/PriorityQueue.h Rgraphviz/src/graphviz/lib/sfdpgen/QuadTree.c Rgraphviz/src/graphviz/lib/sfdpgen/QuadTree.h Rgraphviz/src/graphviz/lib/sfdpgen/post_process.c Rgraphviz/src/graphviz/lib/sfdpgen/post_process.h Rgraphviz/src/graphviz/lib/sfdpgen/sfdp.h Rgraphviz/src/graphviz/lib/sfdpgen/sfdp.vcproj Rgraphviz/src/graphviz/lib/sfdpgen/sfdpinit.c Rgraphviz/src/graphviz/lib/sfdpgen/sfdpinternal.h Rgraphviz/src/graphviz/lib/sfdpgen/sparse_solve.c Rgraphviz/src/graphviz/lib/sfdpgen/sparse_solve.h Rgraphviz/src/graphviz/lib/sfdpgen/spring_electrical.c Rgraphviz/src/graphviz/lib/sfdpgen/spring_electrical.h Rgraphviz/src/graphviz/lib/sfdpgen/stress_model.c Rgraphviz/src/graphviz/lib/sfdpgen/stress_model.h Rgraphviz/src/graphviz/lib/sfdpgen/uniform_stress.c Rgraphviz/src/graphviz/lib/sfdpgen/uniform_stress.h Rgraphviz/src/graphviz/lib/sparse/ Rgraphviz/src/graphviz/lib/sparse/BinaryHeap.c Rgraphviz/src/graphviz/lib/sparse/BinaryHeap.h Rgraphviz/src/graphviz/lib/sparse/IntStack.c Rgraphviz/src/graphviz/lib/sparse/IntStack.h Rgraphviz/src/graphviz/lib/sparse/Makefile.am Rgraphviz/src/graphviz/lib/sparse/Makefile.in Rgraphviz/src/graphviz/lib/sparse/Makefile.old Rgraphviz/src/graphviz/lib/sparse/SparseMatrix.c Rgraphviz/src/graphviz/lib/sparse/SparseMatrix.h Rgraphviz/src/graphviz/lib/sparse/general.c Rgraphviz/src/graphviz/lib/sparse/general.h Rgraphviz/src/graphviz/lib/sparse/gvsparse.vcproj Rgraphviz/src/graphviz/lib/twopigen/ Rgraphviz/src/graphviz/lib/twopigen/Makefile.am Rgraphviz/src/graphviz/lib/twopigen/Makefile.in Rgraphviz/src/graphviz/lib/twopigen/Makefile.old Rgraphviz/src/graphviz/lib/twopigen/circle.c Rgraphviz/src/graphviz/lib/twopigen/circle.h Rgraphviz/src/graphviz/lib/twopigen/gvtwopigen.vcproj Rgraphviz/src/graphviz/lib/twopigen/twopiinit.c Rgraphviz/src/graphviz/lib/vpsc/ Rgraphviz/src/graphviz/lib/vpsc/Makefile.am Rgraphviz/src/graphviz/lib/vpsc/Makefile.in Rgraphviz/src/graphviz/lib/vpsc/Makefile.old Rgraphviz/src/graphviz/lib/vpsc/block.cpp Rgraphviz/src/graphviz/lib/vpsc/block.h Rgraphviz/src/graphviz/lib/vpsc/blocks.cpp Rgraphviz/src/graphviz/lib/vpsc/blocks.h Rgraphviz/src/graphviz/lib/vpsc/constraint.cpp Rgraphviz/src/graphviz/lib/vpsc/constraint.h Rgraphviz/src/graphviz/lib/vpsc/csolve_VPSC.cpp Rgraphviz/src/graphviz/lib/vpsc/csolve_VPSC.h Rgraphviz/src/graphviz/lib/vpsc/generate-constraints.cpp Rgraphviz/src/graphviz/lib/vpsc/generate-constraints.h Rgraphviz/src/graphviz/lib/vpsc/pairingheap/ Rgraphviz/src/graphviz/lib/vpsc/pairingheap/PairingHeap.cpp Rgraphviz/src/graphviz/lib/vpsc/pairingheap/PairingHeap.h Rgraphviz/src/graphviz/lib/vpsc/pairingheap/dsexceptions.h Rgraphviz/src/graphviz/lib/vpsc/remove_rectangle_overlap.cpp Rgraphviz/src/graphviz/lib/vpsc/remove_rectangle_overlap.h Rgraphviz/src/graphviz/lib/vpsc/solve_VPSC.cpp Rgraphviz/src/graphviz/lib/vpsc/solve_VPSC.h Rgraphviz/src/graphviz/lib/vpsc/variable.cpp Rgraphviz/src/graphviz/lib/vpsc/variable.h Rgraphviz/src/graphviz/lib/vpsc/vpsc.vcproj Rgraphviz/src/graphviz/lib/xdot/ Rgraphviz/src/graphviz/lib/xdot/Makefile.am Rgraphviz/src/graphviz/lib/xdot/Makefile.in Rgraphviz/src/graphviz/lib/xdot/libxdot.pc.in Rgraphviz/src/graphviz/lib/xdot/xdot.3 Rgraphviz/src/graphviz/lib/xdot/xdot.3.pdf Rgraphviz/src/graphviz/lib/xdot/xdot.c Rgraphviz/src/graphviz/lib/xdot/xdot.h Rgraphviz/src/graphviz/lib/xdot/xdot.vcproj Rgraphviz/src/graphviz/libltdl/ Rgraphviz/src/graphviz/libltdl/COPYING.LIB Rgraphviz/src/graphviz/libltdl/Makefile.am Rgraphviz/src/graphviz/libltdl/Makefile.in Rgraphviz/src/graphviz/libltdl/README Rgraphviz/src/graphviz/libltdl/aclocal.m4 Rgraphviz/src/graphviz/libltdl/argz.c Rgraphviz/src/graphviz/libltdl/argz_.h Rgraphviz/src/graphviz/libltdl/config/ Rgraphviz/src/graphviz/libltdl/config-h.in Rgraphviz/src/graphviz/libltdl/config/compile Rgraphviz/src/graphviz/libltdl/config/config.guess Rgraphviz/src/graphviz/libltdl/config/config.sub Rgraphviz/src/graphviz/libltdl/config/depcomp Rgraphviz/src/graphviz/libltdl/config/install-sh Rgraphviz/src/graphviz/libltdl/config/ltmain.sh Rgraphviz/src/graphviz/libltdl/config/missing Rgraphviz/src/graphviz/libltdl/configure Rgraphviz/src/graphviz/libltdl/configure.ac Rgraphviz/src/graphviz/libltdl/libltdl/ Rgraphviz/src/graphviz/libltdl/libltdl/lt__alloc.h Rgraphviz/src/graphviz/libltdl/libltdl/lt__dirent.h Rgraphviz/src/graphviz/libltdl/libltdl/lt__glibc.h Rgraphviz/src/graphviz/libltdl/libltdl/lt__private.h Rgraphviz/src/graphviz/libltdl/libltdl/lt__strl.h Rgraphviz/src/graphviz/libltdl/libltdl/lt_dlloader.h Rgraphviz/src/graphviz/libltdl/libltdl/lt_error.h Rgraphviz/src/graphviz/libltdl/libltdl/lt_system.h Rgraphviz/src/graphviz/libltdl/libltdl/slist.h Rgraphviz/src/graphviz/libltdl/loaders/ Rgraphviz/src/graphviz/libltdl/loaders/dld_link.c Rgraphviz/src/graphviz/libltdl/loaders/dlopen.c Rgraphviz/src/graphviz/libltdl/loaders/dyld.c Rgraphviz/src/graphviz/libltdl/loaders/load_add_on.c Rgraphviz/src/graphviz/libltdl/loaders/loadlibrary.c Rgraphviz/src/graphviz/libltdl/loaders/preopen.c Rgraphviz/src/graphviz/libltdl/loaders/shl_load.c Rgraphviz/src/graphviz/libltdl/lt__alloc.c Rgraphviz/src/graphviz/libltdl/lt__dirent.c Rgraphviz/src/graphviz/libltdl/lt__strl.c Rgraphviz/src/graphviz/libltdl/lt__strl.lo Rgraphviz/src/graphviz/libltdl/lt__strl.o Rgraphviz/src/graphviz/libltdl/lt_dlloader.c Rgraphviz/src/graphviz/libltdl/lt_error.c Rgraphviz/src/graphviz/libltdl/ltdl.c Rgraphviz/src/graphviz/libltdl/ltdl.h Rgraphviz/src/graphviz/libltdl/m4/ Rgraphviz/src/graphviz/libltdl/m4/argz.m4 Rgraphviz/src/graphviz/libltdl/m4/libtool.m4 Rgraphviz/src/graphviz/libltdl/m4/lt-obsolete.m4 Rgraphviz/src/graphviz/libltdl/m4/ltdl.m4 Rgraphviz/src/graphviz/libltdl/m4/ltoptions.m4 Rgraphviz/src/graphviz/libltdl/m4/ltsugar.m4 Rgraphviz/src/graphviz/libltdl/m4/ltversion.m4 Rgraphviz/src/graphviz/libltdl/slist.c Rgraphviz/src/graphviz/m4/ Rgraphviz/src/graphviz/m4/README Rgraphviz/src/graphviz/m4/argz.m4 Rgraphviz/src/graphviz/m4/iconv.m4 Rgraphviz/src/graphviz/m4/lib-ld.m4 Rgraphviz/src/graphviz/m4/lib-link.m4 Rgraphviz/src/graphviz/m4/lib-prefix.m4 Rgraphviz/src/graphviz/m4/libtool.m4 Rgraphviz/src/graphviz/m4/lt-obsolete.m4 Rgraphviz/src/graphviz/m4/ltdl.m4 Rgraphviz/src/graphviz/m4/ltoptions.m4 Rgraphviz/src/graphviz/m4/ltsugar.m4 Rgraphviz/src/graphviz/m4/ltversion.m4 Rgraphviz/src/graphviz/makearch/ Rgraphviz/src/graphviz/makearch/aix41 Rgraphviz/src/graphviz/makearch/hp.pa Rgraphviz/src/graphviz/makearch/linux.i386 Rgraphviz/src/graphviz/makearch/linux.x86_64 Rgraphviz/src/graphviz/makearch/netbsd.i386 Rgraphviz/src/graphviz/makearch/osf.alpha Rgraphviz/src/graphviz/makearch/osx Rgraphviz/src/graphviz/makearch/sgi.mips2 Rgraphviz/src/graphviz/makearch/sgi.mips3 Rgraphviz/src/graphviz/makearch/sol.i386 Rgraphviz/src/graphviz/makearch/sol.sun4 Rgraphviz/src/graphviz/makearch/sol6.sun4 Rgraphviz/src/graphviz/makearch/sun4 Rgraphviz/src/graphviz/plugin/ Rgraphviz/src/graphviz/plugin/Makefile.am Rgraphviz/src/graphviz/plugin/Makefile.in Rgraphviz/src/graphviz/plugin/Makefile.old Rgraphviz/src/graphviz/plugin/core/ Rgraphviz/src/graphviz/plugin/core/Makefile.am Rgraphviz/src/graphviz/plugin/core/Makefile.in Rgraphviz/src/graphviz/plugin/core/Makefile.old Rgraphviz/src/graphviz/plugin/core/gvloadimage_core.c Rgraphviz/src/graphviz/plugin/core/gvplugin_core.c Rgraphviz/src/graphviz/plugin/core/gvplugin_core.def Rgraphviz/src/graphviz/plugin/core/gvplugin_core.vcproj Rgraphviz/src/graphviz/plugin/core/gvrender_core_dot.c Rgraphviz/src/graphviz/plugin/core/gvrender_core_fig.c Rgraphviz/src/graphviz/plugin/core/gvrender_core_map.c Rgraphviz/src/graphviz/plugin/core/gvrender_core_ps.c Rgraphviz/src/graphviz/plugin/core/gvrender_core_svg.c Rgraphviz/src/graphviz/plugin/core/gvrender_core_tk.c Rgraphviz/src/graphviz/plugin/core/gvrender_core_vml.c Rgraphviz/src/graphviz/plugin/core/plugincore.vcproj Rgraphviz/src/graphviz/plugin/core/ps.h Rgraphviz/src/graphviz/plugin/core/ps.txt Rgraphviz/src/graphviz/plugin/dot_layout/ Rgraphviz/src/graphviz/plugin/dot_layout/Makefile.am Rgraphviz/src/graphviz/plugin/dot_layout/Makefile.in Rgraphviz/src/graphviz/plugin/dot_layout/Makefile.old Rgraphviz/src/graphviz/plugin/dot_layout/gvlayout_dot_layout.c Rgraphviz/src/graphviz/plugin/dot_layout/gvplugin_dot_layout.c Rgraphviz/src/graphviz/plugin/dot_layout/gvplugin_dot_layout.def Rgraphviz/src/graphviz/plugin/dot_layout/gvplugin_dot_layout.vcproj Rgraphviz/src/graphviz/plugin/neato_layout/ Rgraphviz/src/graphviz/plugin/neato_layout/Makefile.am Rgraphviz/src/graphviz/plugin/neato_layout/Makefile.in Rgraphviz/src/graphviz/plugin/neato_layout/Makefile.old Rgraphviz/src/graphviz/plugin/neato_layout/gvlayout_neato_layout.c Rgraphviz/src/graphviz/plugin/neato_layout/gvplugin_neato_layout.c Rgraphviz/src/graphviz/plugin/neato_layout/gvplugin_neato_layout.def Rgraphviz/src/graphviz/plugin/neato_layout/gvplugin_neato_layout.vcproj Rgraphviz/src/graphvizVersion.c Rgraphviz/src/init.c Rgraphviz/src/libwin/ Rgraphviz/src/libwin/i386/ Rgraphviz/src/libwin/i386/include/ Rgraphviz/src/libwin/i386/include/graphviz/ Rgraphviz/src/libwin/i386/include/graphviz/arith.h Rgraphviz/src/libwin/i386/include/graphviz/cdt.h Rgraphviz/src/libwin/i386/include/graphviz/color.h Rgraphviz/src/libwin/i386/include/graphviz/geom.h Rgraphviz/src/libwin/i386/include/graphviz/graph.h Rgraphviz/src/libwin/i386/include/graphviz/graphviz_version.h Rgraphviz/src/libwin/i386/include/graphviz/gvc.h Rgraphviz/src/libwin/i386/include/graphviz/gvcext.h Rgraphviz/src/libwin/i386/include/graphviz/gvcjob.h Rgraphviz/src/libwin/i386/include/graphviz/gvcommon.h Rgraphviz/src/libwin/i386/include/graphviz/gvconfig.h Rgraphviz/src/libwin/i386/include/graphviz/gvplugin.h Rgraphviz/src/libwin/i386/include/graphviz/gvplugin_device.h Rgraphviz/src/libwin/i386/include/graphviz/gvplugin_layout.h Rgraphviz/src/libwin/i386/include/graphviz/gvplugin_loadimage.h Rgraphviz/src/libwin/i386/include/graphviz/gvplugin_render.h Rgraphviz/src/libwin/i386/include/graphviz/gvplugin_textlayout.h Rgraphviz/src/libwin/i386/include/graphviz/pack.h Rgraphviz/src/libwin/i386/include/graphviz/pathgeom.h Rgraphviz/src/libwin/i386/include/graphviz/pathplan.h Rgraphviz/src/libwin/i386/include/graphviz/textpara.h Rgraphviz/src/libwin/i386/include/graphviz/types.h Rgraphviz/src/libwin/i386/include/graphviz/usershape.h Rgraphviz/src/libwin/i386/include/graphviz/xdot.h Rgraphviz/src/libwin/i386/lib/ Rgraphviz/src/libwin/i386/lib/libcdt.a Rgraphviz/src/libwin/i386/lib/libcdt.la Rgraphviz/src/libwin/i386/lib/libgraph.a Rgraphviz/src/libwin/i386/lib/libgraph.la Rgraphviz/src/libwin/i386/lib/libgvc.a Rgraphviz/src/libwin/i386/lib/libgvc.la Rgraphviz/src/libwin/i386/lib/libgvplugin_core.a Rgraphviz/src/libwin/i386/lib/libgvplugin_core.la Rgraphviz/src/libwin/i386/lib/libgvplugin_dot_layout.a Rgraphviz/src/libwin/i386/lib/libgvplugin_dot_layout.la Rgraphviz/src/libwin/i386/lib/libgvplugin_neato_layout.a Rgraphviz/src/libwin/i386/lib/libgvplugin_neato_layout.la Rgraphviz/src/libwin/i386/lib/libpathplan.a Rgraphviz/src/libwin/i386/lib/libpathplan.la Rgraphviz/src/libwin/i386/lib/libxdot.a Rgraphviz/src/libwin/i386/lib/libxdot.la Rgraphviz/src/libwin/x64/ Rgraphviz/src/libwin/x64/include/ Rgraphviz/src/libwin/x64/include/graphviz/ Rgraphviz/src/libwin/x64/include/graphviz/arith.h Rgraphviz/src/libwin/x64/include/graphviz/cdt.h Rgraphviz/src/libwin/x64/include/graphviz/color.h Rgraphviz/src/libwin/x64/include/graphviz/geom.h Rgraphviz/src/libwin/x64/include/graphviz/graph.h Rgraphviz/src/libwin/x64/include/graphviz/graphviz_version.h Rgraphviz/src/libwin/x64/include/graphviz/gvc.h Rgraphviz/src/libwin/x64/include/graphviz/gvcext.h Rgraphviz/src/libwin/x64/include/graphviz/gvcjob.h Rgraphviz/src/libwin/x64/include/graphviz/gvcommon.h Rgraphviz/src/libwin/x64/include/graphviz/gvconfig.h Rgraphviz/src/libwin/x64/include/graphviz/gvplugin.h Rgraphviz/src/libwin/x64/include/graphviz/gvplugin_device.h Rgraphviz/src/libwin/x64/include/graphviz/gvplugin_layout.h Rgraphviz/src/libwin/x64/include/graphviz/gvplugin_loadimage.h Rgraphviz/src/libwin/x64/include/graphviz/gvplugin_render.h Rgraphviz/src/libwin/x64/include/graphviz/gvplugin_textlayout.h Rgraphviz/src/libwin/x64/include/graphviz/pack.h Rgraphviz/src/libwin/x64/include/graphviz/pathgeom.h Rgraphviz/src/libwin/x64/include/graphviz/pathplan.h Rgraphviz/src/libwin/x64/include/graphviz/textpara.h Rgraphviz/src/libwin/x64/include/graphviz/types.h Rgraphviz/src/libwin/x64/include/graphviz/usershape.h Rgraphviz/src/libwin/x64/include/graphviz/xdot.h Rgraphviz/src/libwin/x64/lib/ Rgraphviz/src/libwin/x64/lib/libcdt.a Rgraphviz/src/libwin/x64/lib/libcdt.la Rgraphviz/src/libwin/x64/lib/libgraph.a Rgraphviz/src/libwin/x64/lib/libgraph.la Rgraphviz/src/libwin/x64/lib/libgvc.a Rgraphviz/src/libwin/x64/lib/libgvc.la Rgraphviz/src/libwin/x64/lib/libgvplugin_core.a Rgraphviz/src/libwin/x64/lib/libgvplugin_core.la Rgraphviz/src/libwin/x64/lib/libgvplugin_dot_layout.a Rgraphviz/src/libwin/x64/lib/libgvplugin_dot_layout.la Rgraphviz/src/libwin/x64/lib/libgvplugin_neato_layout.a Rgraphviz/src/libwin/x64/lib/libgvplugin_neato_layout.la Rgraphviz/src/libwin/x64/lib/libpathplan.a Rgraphviz/src/libwin/x64/lib/libpathplan.la Rgraphviz/src/libwin/x64/lib/libxdot.a Rgraphviz/src/libwin/x64/lib/libxdot.la Rgraphviz/src/util.h Rgraphviz/tests/ Rgraphviz/tests/runTests.R Rgraphviz/vignettes/ Rgraphviz/vignettes/Rgraphviz.Rnw Rgraphviz/vignettes/newRgraphvizInterface.Rnw sudo -u fink-bld [ENV] sh -c /tmp/fink.HbYlE /tmp/fink.Z7VM9 #!/bin/bash -ev export TMPDIR=/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R pushd .. /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1 /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz $BIN_R --verbose CMD build --no-build-vignettes Rgraphviz * checking for file 'Rgraphviz/DESCRIPTION' ... OK * preparing 'Rgraphviz': * checking DESCRIPTION meta-information ... OK * cleaning src * running 'cleanup' * checking vignette meta-information ... OK * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building 'Rgraphviz_2.8.1.tar.gz' /bin/rm -rf /sw/build.build/root-bioconductor-rgraphviz-r30-2.8.1-1 /bin/mkdir -p /sw/build.build/root-bioconductor-rgraphviz-r30-2.8.1-1/sw /bin/mkdir -p /sw/build.build/root-bioconductor-rgraphviz-r30-2.8.1-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-bioconductor-rgraphviz-r30-2.8.1-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.Ahbhk /tmp/fink.cE90o #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R mkdir -p /sw/build.build/root-bioconductor-rgraphviz-r30-2.8.1-1/sw/lib/R/3.0/site-library pushd /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-bioconductor-rgraphviz-r30-2.8.1-1/sw/lib/R/3.0/site-library Rgraphviz /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1 /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz * installing *source* package 'Rgraphviz' ... configure: Using bundled Graphviz. configure: Searching for the compilers specified by R. checking for gcc... flag-sort -r gcc -ffor-scope checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether flag-sort -r gcc -ffor-scope accepts -g... yes checking for flag-sort -r gcc -ffor-scope option to accept ISO C89... none needed checking how to run the C preprocessor... flag-sort -r gcc -ffor-scope -E checking whether we are using the GNU C++ compiler... yes checking whether flag-sort -r g++ accepts -g... yes configure: Preparing to compile Graphviz. configure: Configuring bundled Graphviz. checking build system type... x86_64-apple-darwin13.3.0 checking host system type... x86_64-apple-darwin13.3.0 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... config/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for style of include used by make... GNU checking for gcc... flag-sort -r gcc -ffor-scope checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether flag-sort -r gcc -ffor-scope accepts -g... yes checking for flag-sort -r gcc -ffor-scope option to accept ISO C89... none needed checking dependency style of flag-sort -r gcc -ffor-scope... gcc3 checking for library containing strerror... none required checking for flex... flex checking lex output file root... lex.yy checking lex library... -ll checking whether yytext is a pointer... yes checking for bison... bison -y checking for gawk... (cached) awk checking whether ln -s works... yes checking for sed... /usr/bin/sed checking for grep... grep checking for sort... sort checking for groff... groff checking for ps2pdf... false checking for pstopdf... (cached) false checking for pkg-config... /sw/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for tclsh8.6... /sw/bin/tclsh8.6 checking whether flag-sort -r gcc -ffor-scope and cc understand -c and -o together... yes checking whether we are using the GNU C++ compiler... yes checking whether flag-sort -r g++ accepts -g... yes checking dependency style of flag-sort -r g++... gcc3 checking for gcc... gcc checking whether we are using the GNU Objective C compiler... yes checking whether gcc accepts -g... yes checking dependency style of gcc... gcc3 checking for inline... inline checking for windres... no checking for an ANSI C-conforming const... yes checking how to run the C preprocessor... flag-sort -r gcc -ffor-scope -E checking for grep that handles long lines and -e... grep checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for mode_t... yes checking for pid_t... yes checking for size_t... yes checking for ssize_t... yes checking for uid_t in sys/types.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stddef.h... (cached) yes checking for stdlib.h... (cached) yes checking for stdint.h... (cached) yes checking malloc.h usability... no checking malloc.h presence... no checking for malloc.h... no checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking search.h usability... yes checking search.h presence... yes checking for search.h... yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking values.h usability... no checking values.h presence... no checking for values.h... no checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking termios.h usability... yes checking termios.h presence... yes checking for termios.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking for unistd.h... (cached) yes checking fenv.h usability... yes checking fenv.h presence... yes checking for fenv.h... yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking setjmp.h usability... yes checking setjmp.h presence... yes checking for setjmp.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/times.h usability... yes checking sys/times.h presence... yes checking for sys/times.h... yes checking for sys/types.h... (cached) yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking fpu_control.h usability... no checking fpu_control.h presence... no checking for fpu_control.h... no checking sys/fpu.h usability... no checking sys/fpu.h presence... no checking for sys/fpu.h... no checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for sys/stat.h... (cached) yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking sys/inotify.h usability... no checking sys/inotify.h presence... no checking for sys/inotify.h... no checking langinfo.h usability... yes checking langinfo.h presence... yes checking for langinfo.h... yes checking libintl.h usability... yes checking libintl.h presence... yes checking for libintl.h... yes checking crt_externs.h usability... yes checking crt_externs.h presence... yes checking for crt_externs.h... yes checking whether time.h and sys/time.h may both be included... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for socklen_t... yes checking for bool... yes checking for struct dioattr... no checking for main in -lm... yes checking for feenableexcept... no checking for fesetenv... yes checking libgen.h usability... yes checking libgen.h presence... yes checking for libgen.h... yes checking for basename in -lgen... no checking for working alloca.h... yes checking for alloca... yes checking for lrand48... yes checking for drand48... yes checking for srand48... yes checking for setmode... yes checking for setenv... yes checking for getenv... yes checking for __freadable... no checking for _sysconf... no checking for getrusage... yes checking for strerror... yes checking for cbrt... yes checking for lsqrt... no checking for vsnprintf... yes checking for strtoul... yes checking for strtoll... yes checking for strtoull... yes checking for uname... yes checking for memset... yes checking for nl_langinfo... yes checking for pow... yes checking for sqrt... yes checking for strchr... yes checking for strdup... yes checking for strerror... (cached) yes checking for strstr... yes checking for _NSGetEnviron... yes checking for strcasecmp... yes checking for strncasecmp... yes checking for strcasestr... yes checking for a sed that does not truncate output... /usr/bin/sed checking for fgrep... grep -F checking for ld used by flag-sort -r gcc -ffor-scope... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm checking the name lister (/usr/bin/nm) interface... BSD nm checking the maximum length of command line arguments... 196608 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r checking for objdump... no checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm output from flag-sort -r gcc -ffor-scope object... ok checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... no checking for -exported_symbols_list linker flag... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether flag-sort -r g++ accepts -g... (cached) yes checking dependency style of flag-sort -r g++... (cached) gcc3 checking how to run the C++ preprocessor... flag-sort -r g++ -E checking for objdir... .libs checking if flag-sort -r gcc -ffor-scope supports -fno-rtti -fno-exceptions... yes checking for flag-sort -r gcc -ffor-scope option to produce PIC... -fno-common -DPIC checking if flag-sort -r gcc -ffor-scope PIC flag -fno-common -DPIC works... yes checking if flag-sort -r gcc -ffor-scope static flag -static works... no checking if flag-sort -r gcc -ffor-scope supports -c -o file.o... yes checking if flag-sort -r gcc -ffor-scope supports -c -o file.o... (cached) yes checking whether the flag-sort -r gcc -ffor-scope linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin13.3.0 dyld checking how to hardcode library paths into programs... immediate checking for dlopen in -ldl... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... yes checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for ld used by flag-sort -r g++... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no checking whether the flag-sort -r g++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking for flag-sort -r g++ option to produce PIC... -fno-common -DPIC checking if flag-sort -r g++ PIC flag -fno-common -DPIC works... yes checking if flag-sort -r g++ static flag -static works... no checking if flag-sort -r g++ supports -c -o file.o... yes checking if flag-sort -r g++ supports -c -o file.o... (cached) yes checking whether the flag-sort -r g++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin13.3.0 dyld checking how to hardcode library paths into programs... immediate checking which extension is used for runtime loadable modules... .so checking which variable specifies run-time module search path... DYLD_LIBRARY_PATH checking for the default library search path... /usr/local/lib /lib /usr/lib checking for library containing dlopen... none required checking for dlerror... yes checking for shl_load... no checking for shl_load in -ldld... no checking for dld_link in -ldld... no checking for _ prefix in compiled symbols... yes checking whether we have to add an underscore for dlsym... no checking whether deplibs are loaded by dlopen... yes checking for argz.h... no checking for error_t... no checking for argz_add... no checking for argz_append... no checking for argz_count... no checking for argz_create_sep... no checking for argz_insert... no checking for argz_next... no checking for argz_stringify... no checking whether libtool supports -dlopen/-dlpreopen... yes checking for ltdl.h... no checking where to find libltdl headers... -I${top_srcdir}/libltdl checking where to find libltdl library... ${top_build_prefix}libltdl/libltdlc.la checking for unistd.h... (cached) yes checking for dl.h... no checking for sys/dl.h... no checking for dld.h... no checking for mach-o/dyld.h... yes checking for dirent.h... yes checking for closedir... yes checking for opendir... yes checking for readdir... yes checking for strlcat... yes checking for strlcpy... yes checking for X... disabled configure: WARNING: X11 not available. checking tcl.h usability... yes checking tcl.h presence... yes checking for tcl.h... yes configure: WARNING: Unable to find tclConfig.sh. The Tcl packages will not be built configure: WARNING: No Tcl. The Tk packages will not be built either checking for connect... yes checking for gethostbyname... yes checking for main in -lXpm... no configure: WARNING: Optional Xpm library not available checking X11/Intrinsic.h usability... no checking X11/Intrinsic.h presence... no checking for X11/Intrinsic.h... no checking for X11/Xaw/Text.h... no configure: WARNING: Optional Xaw library not available - missing headers checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for main in -lz... yes checking for deflateBound... yes checking for GDK_PIXBUF... no checking for GTK... no checking for GTKGL... no checking for GTKGLEXT... no checking for GLADE... no checking for qmake-qt4... no checking for qmake-qt3... no checking for qmake... no checking for sincos... no checking if FILE struct contains _cnt... no checking if FILE struct contains _r... yes checking if FILE struct contains _next... no checking if FILE struct contains _IO_read_end... no checking if errno externs are declared... yes checking if getopt externs are declared... yes checking if intptr_t is declared... yes checking if assert needs __eprintf... clang: warning: argument unused during compilation: '-L/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib' clang: warning: argument unused during compilation: '-L/sw/lib' no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Makefile config.status: creating lib/cdt/Makefile config.status: creating lib/cdt/libcdt.pc config.status: creating lib/graph/Makefile config.status: creating lib/graph/libgraph.pc config.status: creating lib/rbtree/Makefile config.status: creating lib/pathplan/Makefile config.status: creating lib/pathplan/libpathplan.pc config.status: creating lib/dotgen/Makefile config.status: creating lib/neatogen/Makefile config.status: creating lib/fdpgen/Makefile config.status: creating lib/sparse/Makefile config.status: creating lib/sfdpgen/Makefile config.status: creating lib/osage/Makefile config.status: creating lib/circogen/Makefile config.status: creating lib/twopigen/Makefile config.status: creating lib/patchwork/Makefile config.status: creating lib/pack/Makefile config.status: creating lib/ortho/Makefile config.status: creating lib/common/Makefile config.status: creating lib/vpsc/Makefile config.status: creating lib/gvc/Makefile config.status: creating lib/gvc/libgvc.pc config.status: creating lib/xdot/Makefile config.status: creating lib/xdot/libxdot.pc config.status: creating plugin/Makefile config.status: creating plugin/core/Makefile config.status: creating plugin/dot_layout/Makefile config.status: creating plugin/neato_layout/Makefile config.status: creating graphviz.spec config.status: creating Doxyfile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands === configuring in libltdl (/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/graphviz/libltdl) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix' 'CC=flag-sort -r gcc -ffor-scope' 'CXX=flag-sort -r g++' 'CFLAGS=-g -O3' 'CXXFLAGS=-g -O3' 'LDFLAGS=-L/sw/lib' '--libdir=/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib' '--includedir=/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include' '--with-cgraph=no' '--enable-swig=no' '--enable-static' '--disable-shared' '--with-pic' '--with-libgd=no' '--disable-ltdl' '--without-x' '--without-expat' '--without-devil' '--without-rsvg' '--without-ghostscript' '--without-visio' '--without-pangocairo' '--without-lasi' '--without-glitz' '--without-freetype2' '--without-fontconfig' '--without-rpat' '--without-glut' '--without-gts' '--without-png' '--without-tcl' '--without-jpeg' 'CPPFLAGS=-I/sw/include' 'R_LIBS=/sw/build.build/root-bioconductor-rgraphviz-r30-2.8.1-1/sw/lib/R/3.0/site-library' '--enable-ltdl-convenience' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... config/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking build system type... x86_64-apple-darwin13.3.0 checking host system type... x86_64-apple-darwin13.3.0 checking for style of include used by make... GNU checking for gcc... flag-sort -r gcc -ffor-scope checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether flag-sort -r gcc -ffor-scope accepts -g... yes checking for flag-sort -r gcc -ffor-scope option to accept ISO C89... none needed checking dependency style of flag-sort -r gcc -ffor-scope... gcc3 checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by flag-sort -r gcc -ffor-scope... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm checking the name lister (/usr/bin/nm) interface... rm: conftest.dSYM: is a directory BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 196608 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r checking for objdump... no checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm output from flag-sort -r gcc -ffor-scope object... rm: conftest.dSYM: is a directory ok checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking how to run the C preprocessor... flag-sort -r gcc -ffor-scope -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if flag-sort -r gcc -ffor-scope supports -fno-rtti -fno-exceptions... yes checking for flag-sort -r gcc -ffor-scope option to produce PIC... -fno-common -DPIC checking if flag-sort -r gcc -ffor-scope PIC flag -fno-common -DPIC works... yes checking if flag-sort -r gcc -ffor-scope static flag -static works... no checking if flag-sort -r gcc -ffor-scope supports -c -o file.o... yes checking if flag-sort -r gcc -ffor-scope supports -c -o file.o... (cached) yes checking whether the flag-sort -r gcc -ffor-scope linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin13.3.0 dyld checking how to hardcode library paths into programs... immediate checking for dlopen in -ldl... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... yes checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking which extension is used for runtime loadable modules... .so checking which variable specifies run-time module search path... DYLD_LIBRARY_PATH checking for the default library search path... /usr/local/lib /lib /usr/lib checking for library containing dlopen... none required checking for dlerror... yes checking for shl_load... no checking for shl_load in -ldld... no checking for dld_link in -ldld... no checking for _ prefix in compiled symbols... yes checking whether we have to add an underscore for dlsym... no checking whether deplibs are loaded by dlopen... yes checking for argz.h... no checking for error_t... no checking for argz_add... no checking for argz_append... no checking for argz_count... no checking for argz_create_sep... no checking for argz_insert... no checking for argz_next... no checking for argz_stringify... no checking whether libtool supports -dlopen/-dlpreopen... yes checking for unistd.h... (cached) yes checking for dl.h... no checking for sys/dl.h... no checking for dld.h... no checking for mach-o/dyld.h... yes checking for dirent.h... yes checking for closedir... yes checking for opendir... yes checking for readdir... yes checking for strlcat... yes checking for strlcpy... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands ---------------------------------------------------------------- graphviz-2.28.0 will be compiled with the following: options: cgraph: No (disabled by default - experimental) digcola: Yes expat: No (disabled) fontconfig: No (disabled) freetype: No (disabled) glut: No (disabled) gts: No (disabled) ipsepcola: No (disabled by default - C++ portability issues) ltdl: No (disabled) ortho: Yes png: No (disabled) jpeg: No (disabled) sfdp: Yes shared: No (disabled) static: Yes qt: No (qmake not found) commands: dot: Yes (always enabled) neato: Yes (always enabled) fdp: Yes (always enabled) circo: Yes (always enabled) twopi: Yes (always enabled) gvpr: Yes (always enabled) gvmap: Yes (always enabled) lefty: No (missing Xaw headers) smyrna: No (disabled by default - experimental) gvedit: No (qmake not found) plugin libraries: dot_layout: Yes (always enabled) neato_layout: Yes (always enabled) core: Yes (always enabled) devil: No (disabled) gd: No (disabled) gdiplus: No (disabled by default - Windows only) gdk_pixbuf: No (gdk_pixbuf library not available) ghostscript: No (disabled) glitz: No (disabled by default - incomplete) gtk: No (gtk library not available) lasi: No (disabled) ming: No (disabled by default - incomplete) pangocairo: No (disabled) quartz: No (disabled by default - Mac only) rsvg: No (disabled) visio: No (disabled by default - experimental) xlib: No (disabled or unavailable) language extensions: gv_sharp: No (swig not available) gv_go: No (disabled by default - experimental) gv_guile: No (swig not available) gv_io: No (disabled by default - no swig support yet) gv_java: No (swig not available) gv_lua: No (swig not available) gv_ocaml: No (swig not available) gv_perl: No (swig not available) gv_php: No (swig not available) gv_python: No (swig not available) gv_python23: No (disabled by default - for multiversion installs) gv_python24: No (disabled by default - for multiversion installs) gv_python25: No (disabled by default - for multiversion installs) gv_python26: No (disabled by default - for multiversion installs) gv_python27: No (disabled by default - for multiversion installs) gv_R: No (swig not available) gv_ruby: No (swig not available) gv_tcl: No (tcl not available) tcldot: No (tcl not available) tclpathplan: No (tcl not available) gdtclft: No (tcl not available) tkspline: No (tk not available) grep 'PACKAGE\|VERSION\|GVPLUGIN' config.h > graphviz_version.h make install-recursive Making install in libltdl /bin/sh /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/graphviz/libltdl/config/install-sh -d . cp ./argz_.h argz.h-t mv argz.h-t argz.h make install-am /bin/sh ./libtool --tag=CC --mode=compile flag-sort -r gcc -ffor-scope -DHAVE_CONFIG_H -I. -DLT_CONFIG_H='' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -I/sw/include -g -O3 -MT dlopen.lo -MD -MP -MF .deps/dlopen.Tpo -c -o dlopen.lo `test -f 'loaders/dlopen.c' || echo './'`loaders/dlopen.c libtool: compile: flag-sort -r gcc -ffor-scope -DHAVE_CONFIG_H -I. "-DLT_CONFIG_H=" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -I/sw/include -g -O3 -MT dlopen.lo -MD -MP -MF .deps/dlopen.Tpo -c loaders/dlopen.c -fno-common -DPIC -o dlopen.o mv -f .deps/dlopen.Tpo .deps/dlopen.Plo /bin/sh ./libtool --tag=CC --mode=link flag-sort -r gcc -ffor-scope -g -O3 -module -avoid-version -L/sw/lib -o dlopen.la dlopen.lo libtool: link: ar cru .libs/dlopen.a dlopen.o libtool: link: ranlib .libs/dlopen.a libtool: link: ( cd ".libs" && rm -f "dlopen.la" && ln -s "../dlopen.la" "dlopen.la" ) /bin/sh ./libtool --tag=CC --mode=compile flag-sort -r gcc -ffor-scope -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc -DLT_CONFIG_H='' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -I/sw/include -g -O3 -MT libltdlc_la-preopen.lo -MD -MP -MF .deps/libltdlc_la-preopen.Tpo -c -o libltdlc_la-preopen.lo `test -f 'loaders/preopen.c' || echo './'`loaders/preopen.c libtool: compile: flag-sort -r gcc -ffor-scope -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -I/sw/include -g -O3 -MT libltdlc_la-preopen.lo -MD -MP -MF .deps/libltdlc_la-preopen.Tpo -c loaders/preopen.c -fno-common -DPIC -o libltdlc_la-preopen.o mv -f .deps/libltdlc_la-preopen.Tpo .deps/libltdlc_la-preopen.Plo /bin/sh ./libtool --tag=CC --mode=compile flag-sort -r gcc -ffor-scope -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc -DLT_CONFIG_H='' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -I/sw/include -g -O3 -MT libltdlc_la-lt__alloc.lo -MD -MP -MF .deps/libltdlc_la-lt__alloc.Tpo -c -o libltdlc_la-lt__alloc.lo `test -f 'lt__alloc.c' || echo './'`lt__alloc.c libtool: compile: flag-sort -r gcc -ffor-scope -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -I/sw/include -g -O3 -MT libltdlc_la-lt__alloc.lo -MD -MP -MF .deps/libltdlc_la-lt__alloc.Tpo -c lt__alloc.c -fno-common -DPIC -o libltdlc_la-lt__alloc.o mv -f .deps/libltdlc_la-lt__alloc.Tpo .deps/libltdlc_la-lt__alloc.Plo /bin/sh ./libtool --tag=CC --mode=compile flag-sort -r gcc -ffor-scope -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc -DLT_CONFIG_H='' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -I/sw/include -g -O3 -MT libltdlc_la-lt_dlloader.lo -MD -MP -MF .deps/libltdlc_la-lt_dlloader.Tpo -c -o libltdlc_la-lt_dlloader.lo `test -f 'lt_dlloader.c' || echo './'`lt_dlloader.c libtool: compile: flag-sort -r gcc -ffor-scope -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -I/sw/include -g -O3 -MT libltdlc_la-lt_dlloader.lo -MD -MP -MF .deps/libltdlc_la-lt_dlloader.Tpo -c lt_dlloader.c -fno-common -DPIC -o libltdlc_la-lt_dlloader.o mv -f .deps/libltdlc_la-lt_dlloader.Tpo .deps/libltdlc_la-lt_dlloader.Plo /bin/sh ./libtool --tag=CC --mode=compile flag-sort -r gcc -ffor-scope -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc -DLT_CONFIG_H='' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -I/sw/include -g -O3 -MT libltdlc_la-lt_error.lo -MD -MP -MF .deps/libltdlc_la-lt_error.Tpo -c -o libltdlc_la-lt_error.lo `test -f 'lt_error.c' || echo './'`lt_error.c libtool: compile: flag-sort -r gcc -ffor-scope -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -I/sw/include -g -O3 -MT libltdlc_la-lt_error.lo -MD -MP -MF .deps/libltdlc_la-lt_error.Tpo -c lt_error.c -fno-common -DPIC -o libltdlc_la-lt_error.o mv -f .deps/libltdlc_la-lt_error.Tpo .deps/libltdlc_la-lt_error.Plo /bin/sh ./libtool --tag=CC --mode=compile flag-sort -r gcc -ffor-scope -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc -DLT_CONFIG_H='' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -I/sw/include -g -O3 -MT libltdlc_la-ltdl.lo -MD -MP -MF .deps/libltdlc_la-ltdl.Tpo -c -o libltdlc_la-ltdl.lo `test -f 'ltdl.c' || echo './'`ltdl.c libtool: compile: flag-sort -r gcc -ffor-scope -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -I/sw/include -g -O3 -MT libltdlc_la-ltdl.lo -MD -MP -MF .deps/libltdlc_la-ltdl.Tpo -c ltdl.c -fno-common -DPIC -o libltdlc_la-ltdl.o mv -f .deps/libltdlc_la-ltdl.Tpo .deps/libltdlc_la-ltdl.Plo /bin/sh ./libtool --tag=CC --mode=compile flag-sort -r gcc -ffor-scope -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc -DLT_CONFIG_H='' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -I/sw/include -g -O3 -MT libltdlc_la-slist.lo -MD -MP -MF .deps/libltdlc_la-slist.Tpo -c -o libltdlc_la-slist.lo `test -f 'slist.c' || echo './'`slist.c libtool: compile: flag-sort -r gcc -ffor-scope -DHAVE_CONFIG_H -I. -DLTDLOPEN=libltdlc "-DLT_CONFIG_H=" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -I/sw/include -g -O3 -MT libltdlc_la-slist.lo -MD -MP -MF .deps/libltdlc_la-slist.Tpo -c slist.c -fno-common -DPIC -o libltdlc_la-slist.o mv -f .deps/libltdlc_la-slist.Tpo .deps/libltdlc_la-slist.Plo /bin/sh ./libtool --tag=CC --mode=compile flag-sort -r gcc -ffor-scope -DHAVE_CONFIG_H -I. -DLT_CONFIG_H='' -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -I/sw/include -g -O3 -MT argz.lo -MD -MP -MF .deps/argz.Tpo -c -o argz.lo argz.c libtool: compile: flag-sort -r gcc -ffor-scope -DHAVE_CONFIG_H -I. "-DLT_CONFIG_H=" -DLTDL -I. -I. -Ilibltdl -I./libltdl -I./libltdl -I/sw/include -g -O3 -MT argz.lo -MD -MP -MF .deps/argz.Tpo -c argz.c -fno-common -DPIC -o argz.o mv -f .deps/argz.Tpo .deps/argz.Plo /bin/sh ./libtool --tag=CC --mode=link flag-sort -r gcc -ffor-scope -g -O3 -no-undefined -dlpreopen dlopen.la -L/sw/lib -o libltdlc.la libltdlc_la-preopen.lo libltdlc_la-lt__alloc.lo libltdlc_la-lt_dlloader.lo libltdlc_la-lt_error.lo libltdlc_la-ltdl.lo libltdlc_la-slist.lo argz.lo libtool: link: rm -f .libs/libltdlc.nm .libs/libltdlc.nmS .libs/libltdlc.nmT libtool: link: (cd .libs && flag-sort -r gcc -ffor-scope -g -O3 -c -fno-builtin -fno-rtti -fno-exceptions -fno-common -DPIC "libltdlcS.c") libtool: link: rm -f ".libs/libltdlcS.c" ".libs/libltdlc.nm" ".libs/libltdlc.nmS" ".libs/libltdlc.nmT" libtool: link: (cd .libs/libltdlc.lax/dlopen.a && ar x "/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/graphviz/libltdl/./.libs/dlopen.a") libtool: link: ar cru .libs/libltdlc.a libltdlc_la-preopen.o libltdlc_la-lt__alloc.o libltdlc_la-lt_dlloader.o libltdlc_la-lt_error.o libltdlc_la-ltdl.o libltdlc_la-slist.o argz.o .libs/libltdlcS.o .libs/libltdlc.lax/dlopen.a/dlopen.o libtool: link: ranlib .libs/libltdlc.a libtool: link: rm -fr .libs/libltdlc.lax libtool: link: ( cd ".libs" && rm -f "libltdlc.la" && ln -s "../libltdlc.la" "libltdlc.la" ) Making install in lib Making install in cdt CC dtclose.lo CC dtdisc.lo CC dtextract.lo CC dtflatten.lo CC dthash.lo CC dtlist.lo CC dtmethod.lo CC dtopen.lo CC dtrenew.lo CC dtrestore.lo CC dtsize.lo CC dtstat.lo CC dtstrhash.lo CC dttree.lo CC dttreeset.lo CC dtview.lo CC dtwalk.lo CCLD libcdt.la CCLD libcdt_C.la ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c libcdt.la '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib' libtool: install: /usr/bin/install -c .libs/libcdt.lai /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/libcdt.la libtool: install: /usr/bin/install -c .libs/libcdt.a /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/libcdt.a libtool: install: chmod 644 /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/libcdt.a libtool: install: ranlib /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/libcdt.a ---------------------------------------------------------------------- Libraries have been installed in: /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable during execution See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/man/man3' /usr/bin/install -c -m 644 cdt.3 '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/man/man3' ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/graphviz/doc/pdf' /usr/bin/install -c -m 644 cdt.3.pdf '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/graphviz/doc/pdf' ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/pkgconfig' /usr/bin/install -c -m 644 libcdt.pc '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/pkgconfig' ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz' /usr/bin/install -c -m 644 cdt.h '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz' Making install in graph CC attribs.lo attribs.c:240:7: warning: explicitly assigning a variable of type 'Agraph_t *' (aka 'struct Agraph_t *') to itself [-Wself-assign] g = g; ~ ^ ~ 1 warning generated. CC agxbuf.lo CC edge.lo edge.c:271:10: warning: explicitly assigning a variable of type 'Agdict_t *' (aka 'struct Agdict_t *') to itself [-Wself-assign] dict = dict; ~~~~ ^ ~~~~ 1 warning generated. CC graph.lo CC graphio.lo CC lexer.lo lexer.c:147:12: warning: returning 'unsigned char *' from a function with result type 'char *' converts between pointers to integer types with different sign [-Wpointer-sign] return p; ^ lexer.c:435:26: warning: passing 'char *' to parameter of type 'unsigned char *' converts between pointers to integer types with different sign [-Wpointer-sign] LexPtr = scan_token(LexPtr, tbuf); ^~~~~~ lexer.c:136:40: note: passing argument to parameter 'p' here static char *scan_token(unsigned char *p, unsigned char *token) ^ lexer.c:435:34: warning: passing 'char *' to parameter of type 'unsigned char *' converts between pointers to integer types with different sign [-Wpointer-sign] LexPtr = scan_token(LexPtr, tbuf); ^~~~ lexer.c:136:58: note: passing argument to parameter 'token' here static char *scan_token(unsigned char *p, unsigned char *token) ^ 3 warnings generated. CC node.lo node.c:138:10: warning: explicitly assigning a variable of type 'Agdict_t *' (aka 'struct Agdict_t *') to itself [-Wself-assign] dict = dict; ~~~~ ^ ~~~~ 1 warning generated. CC parser.lo CC refstr.lo CC trie.lo CCLD libgraph.la CCLD libgraph_C.la ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c libgraph.la '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib' libtool: install: /usr/bin/install -c .libs/libgraph.lai /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/libgraph.la libtool: install: /usr/bin/install -c .libs/libgraph.a /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/libgraph.a libtool: install: chmod 644 /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/libgraph.a libtool: install: ranlib /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/libgraph.a ---------------------------------------------------------------------- Libraries have been installed in: /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable during execution See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/man/man3' /usr/bin/install -c -m 644 graph.3 '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/man/man3' ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/graphviz/doc/pdf' /usr/bin/install -c -m 644 graph.3.pdf '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/graphviz/doc/pdf' ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/pkgconfig' /usr/bin/install -c -m 644 libgraph.pc '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/pkgconfig' ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz' /usr/bin/install -c -m 644 graph.h '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz' Making install in pathplan CC cvt.lo cvt.c:276:13: warning: function 'append_bezier' is not needed and will not be emitted [-Wunneeded-internal-declaration] static void append_bezier(Ppoint_t * bezier) ^ 1 warning generated. CC inpoly.lo CC route.lo CC shortest.lo CC shortestpth.lo CC solvers.lo CC triang.lo CC util.lo CC visibility.lo CCLD libpathplan.la CCLD libpathplan_C.la ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c libpathplan.la '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib' libtool: install: /usr/bin/install -c .libs/libpathplan.lai /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/libpathplan.la libtool: install: /usr/bin/install -c .libs/libpathplan.a /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/libpathplan.a libtool: install: chmod 644 /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/libpathplan.a libtool: install: ranlib /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/libpathplan.a ---------------------------------------------------------------------- Libraries have been installed in: /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable during execution See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/man/man3' /usr/bin/install -c -m 644 pathplan.3 '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/man/man3' ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/graphviz/doc/pdf' /usr/bin/install -c -m 644 pathplan.3.pdf '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/graphviz/doc/pdf' ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/pkgconfig' /usr/bin/install -c -m 644 libpathplan.pc '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/pkgconfig' ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz' /usr/bin/install -c -m 644 pathgeom.h pathplan.h '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz' Making install in vpsc make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in rbtree CC misc.lo CC red_black_tree.lo CC stack.lo CCLD librbtree_C.la make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in ortho CC fPQ.lo CC intset.lo CC maze.lo CC ortho.lo CC partition.lo partition.c:656:14: warning: variable 'size' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] else if (tr[tr_start].d0 > 0) ^~~~~~~~~~~~~~~~~~~ partition.c:665:10: note: uninitialized use occurs here return size; ^~~~ partition.c:656:10: note: remove the 'if' if its condition is always true else if (tr[tr_start].d0 > 0) ^~~~~~~~~~~~~~~~~~~~~~~~ partition.c:620:16: note: initialize the variable 'size' to silence this warning int i, size; ^ = 0 1 warning generated. CC rawgraph.lo CC sgraph.lo CC trapezoid.lo CCLD libortho_C.la make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in sparse CC SparseMatrix.lo CC general.lo CC BinaryHeap.lo CC IntStack.lo CCLD libsparse_C.la make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in patchwork CC patchwork.lo CC patchworkinit.lo CC tree_map.lo CCLD libpatchwork_C.la make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in common CC arrows.lo CC colxlate.lo CC fontmetrics.lo CC args.lo CC memory.lo CC globals.lo /usr/bin/sed "s/yy/html/g" < y.tab.h > htmlparse.h CC htmllex.lo /usr/bin/sed "s/yy/html/g" < y.tab.c > htmlparse.c CC htmlparse.lo CC htmltable.lo CC input.lo CC pointset.lo CC postproc.lo CC routespl.lo CC splines.lo CC psusershape.lo CC timing.lo CC labels.lo CC ns.lo CC shapes.lo shapes.c:1253:12: warning: explicitly assigning a variable of type 'double' to itself [-Wself-assign] angle = angle; ~~~~~ ^ ~~~~~ shapes.c:1261:12: warning: explicitly assigning a variable of type 'double' to itself [-Wself-assign] angle = angle; ~~~~~ ^ ~~~~~ 2 warnings generated. CC utils.lo CC geom.lo CC output.lo CC emit.lo CCLD libcommon_C.la make[4]: Nothing to be done for `install-exec-am'. ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz' /usr/bin/install -c -m 644 arith.h geom.h color.h types.h textpara.h usershape.h '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz' Making install in pack CC ccomps.lo CC pack.lo pack.c:936:9: warning: variable 'pts' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] if (pinfo->mode == l_array) { ^~~~~~~~~~~~~~~~~~~~~~ pack.c:953:12: note: uninitialized use occurs here return pts; ^~~ pack.c:936:5: note: remove the 'if' if its condition is always true if (pinfo->mode == l_array) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ pack.c:920:15: note: initialize the variable 'pts' to silence this warning point* pts; ^ = NULL 1 warning generated. CCLD libpack_C.la make[4]: Nothing to be done for `install-exec-am'. ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/man/man3' /usr/bin/install -c -m 644 pack.3 '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/man/man3' ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/graphviz/doc/pdf' /usr/bin/install -c -m 644 pack.3.pdf '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/graphviz/doc/pdf' ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz' /usr/bin/install -c -m 644 pack.h '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz' Making install in xdot CC xdot.lo CCLD libxdot.la CCLD libxdot_C.la ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c libxdot.la '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib' libtool: install: /usr/bin/install -c .libs/libxdot.lai /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/libxdot.la libtool: install: /usr/bin/install -c .libs/libxdot.a /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/libxdot.a libtool: install: chmod 644 /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/libxdot.a libtool: install: ranlib /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/libxdot.a ---------------------------------------------------------------------- Libraries have been installed in: /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable during execution See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/man/man3' /usr/bin/install -c -m 644 xdot.3 '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/man/man3' ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/graphviz/doc/pdf' /usr/bin/install -c -m 644 xdot.3.pdf '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/graphviz/doc/pdf' ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/pkgconfig' /usr/bin/install -c -m 644 libxdot.pc '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/pkgconfig' ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz' /usr/bin/install -c -m 644 xdot.h '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz' Making install in gvc CC gvrender.lo CC gvlayout.lo CC gvdevice.lo CC gvloadimage.lo CC gvcontext.lo CC gvjobs.lo CC gvevent.lo CC gvplugin.lo gvplugin.c:62:13: warning: comparison of unsigned enum expression < 0 is always false [-Wtautological-compare] if (api < 0 || api >= ARRAY_SIZE(api_names)) ~~~ ^ ~ gvplugin.c:80:13: warning: comparison of unsigned enum expression < 0 is always false [-Wtautological-compare] if (api < 0) ~~~ ^ ~ gvplugin.c:137:13: warning: comparison of unsigned enum expression < 0 is always false [-Wtautological-compare] if (api < 0) ~~~ ^ ~ gvplugin.c:268:13: warning: comparison of unsigned enum expression < 0 is always false [-Wtautological-compare] if (api < 0) ~~~ ^ ~ gvplugin.c:362:13: warning: comparison of unsigned enum expression < 0 is always false [-Wtautological-compare] if (api < 0) ~~~ ^ ~ 5 warnings generated. CC gvconfig.lo CC gvtextlayout.lo CC gvusershape.lo CC gvc.lo CCLD libgvc.la CCLD libgvc_C.la ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c libgvc.la '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib' libtool: install: /usr/bin/install -c .libs/libgvc.lai /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/libgvc.la libtool: install: /usr/bin/install -c .libs/libgvc.a /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/libgvc.a libtool: install: chmod 644 /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/libgvc.a libtool: install: ranlib /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/libgvc.a ---------------------------------------------------------------------- Libraries have been installed in: /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable during execution See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/man/man3' /usr/bin/install -c -m 644 gvc.3 '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/man/man3' ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/graphviz/doc/pdf' /usr/bin/install -c -m 644 gvc.3.pdf '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/graphviz/doc/pdf' ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/pkgconfig' /usr/bin/install -c -m 644 libgvc.pc '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/pkgconfig' ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz' /usr/bin/install -c -m 644 gvc.h gvcext.h gvplugin.h gvcjob.h gvcommon.h gvplugin_render.h gvplugin_layout.h gvconfig.h gvplugin_textlayout.h gvplugin_device.h gvplugin_loadimage.h '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz' Making install in circogen CC circularinit.lo CC nodelist.lo CC block.lo CC edgelist.lo CC circular.lo CC deglist.lo CC blocktree.lo CC blockpath.lo CC circpos.lo CC nodeset.lo CCLD libcircogen_C.la make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in dotgen CC acyclic.lo CC class1.lo CC class2.lo class2.c:53:10: warning: explicitly assigning a variable of type 'edge_t *' (aka 'struct Agedge_t *') to itself [-Wself-assign] orig = orig; ~~~~ ^ ~~~~ 1 warning generated. CC cluster.lo CC compound.lo CC conc.lo CC decomp.lo CC fastgr.lo CC flat.lo CC dotinit.lo CC mincross.lo CC position.lo CC rank.lo CC sameport.lo CC dotsplines.lo dotsplines.c:1604:25: warning: expression result unused [-Wunused-value] lp = ED_label(e)->pos, lp; ^~ 1 warning generated. CC aspect.lo CCLD libdotgen_C.la make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in fdpgen CC comp.lo CC dbg.lo CC grid.lo CC fdpinit.lo CC layout.lo CC tlayout.lo CC xlayout.lo CC clusteredges.lo CCLD libfdpgen_C.la /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libfdpgen_C.a(dbg.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libfdpgen_C.a(dbg.o) has no symbols make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in neatogen CC adjust.lo adjust.c:674:30: warning: variable 'nedge_nodes' is uninitialized when used here [-Wuninitialized] if (elabels && IS_LNODE(n)) nedge_nodes++; ^~~~~~~~~~~ adjust.c:670:23: note: initialize the variable 'nedge_nodes' to silence this warning int i, nedge_nodes; ^ = 0 adjust.c:1073:7: warning: variable 'ret' is used uninitialized whenever switch case is taken [-Wsometimes-uninitialized] case AM_PORTHO_YX: ^~~~~~~~~~~~ adjust.c:1105:9: note: uninitialized use occurs here return ret; ^~~ adjust.c:1074:7: warning: variable 'ret' is used uninitialized whenever switch case is taken [-Wsometimes-uninitialized] case AM_PORTHO: ^~~~~~~~~ adjust.c:1105:9: note: uninitialized use occurs here return ret; ^~~ adjust.c:1075:7: warning: variable 'ret' is used uninitialized whenever switch case is taken [-Wsometimes-uninitialized] case AM_PORTHOXY: ^~~~~~~~~~~ adjust.c:1105:9: note: uninitialized use occurs here return ret; ^~~ adjust.c:1076:7: warning: variable 'ret' is used uninitialized whenever switch case is taken [-Wsometimes-uninitialized] case AM_PORTHOYX: ^~~~~~~~~~~ adjust.c:1105:9: note: uninitialized use occurs here return ret; ^~~ adjust.c:1077:7: warning: variable 'ret' is used uninitialized whenever switch case is taken [-Wsometimes-uninitialized] case AM_ORTHO_YX: ^~~~~~~~~~~ adjust.c:1105:9: note: uninitialized use occurs here return ret; ^~~ adjust.c:1078:7: warning: variable 'ret' is used uninitialized whenever switch case is taken [-Wsometimes-uninitialized] case AM_ORTHO: ^~~~~~~~ adjust.c:1105:9: note: uninitialized use occurs here return ret; ^~~ adjust.c:1079:7: warning: variable 'ret' is used uninitialized whenever switch case is taken [-Wsometimes-uninitialized] case AM_ORTHOXY: ^~~~~~~~~~ adjust.c:1105:9: note: uninitialized use occurs here return ret; ^~~ adjust.c:1080:7: warning: variable 'ret' is used uninitialized whenever switch case is taken [-Wsometimes-uninitialized] case AM_ORTHOYX: ^~~~~~~~~~ adjust.c:1105:9: note: uninitialized use occurs here return ret; ^~~ adjust.c:1070:7: warning: variable 'ret' is used uninitialized whenever switch case is taken [-Wsometimes-uninitialized] case AM_PUSHPULL: ^~~~~~~~~~~ adjust.c:1105:9: note: uninitialized use occurs here return ret; ^~~ adjust.c:1067:7: warning: variable 'ret' is used uninitialized whenever switch case is taken [-Wsometimes-uninitialized] case AM_PUSH: ^~~~~~~ adjust.c:1105:9: note: uninitialized use occurs here return ret; ^~~ adjust.c:1099:2: warning: variable 'ret' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized] default: /* to silence warnings */ ^~~~~~~ adjust.c:1105:9: note: uninitialized use occurs here return ret; ^~~ adjust.c:1045:12: note: initialize the variable 'ret' to silence this warning int ret; ^ = 0 12 warnings generated. CC circuit.lo CC edges.lo CC geometry.lo CC heap.lo CC hedges.lo CC info.lo CC neatoinit.lo CC legal.lo CC lu.lo CC matinv.lo CC memory.lo CC poly.lo CC printvis.lo CC site.lo CC solve.lo CC neatosplines.lo neatosplines.c:603:15: warning: unused variable 'rtr' [-Wunused-variable] router_t* rtr = 0; ^ 1 warning generated. CC stuff.lo CC voronoi.lo CC stress.lo stress.c:1383:6: warning: variable 'delta' is uninitialized when used here [-Wuninitialized] delta += abs(Dij[i*nG + j - shift] - graph[i].ewgts[e]); ^~~~~ stress.c:1370:17: note: initialize the variable 'delta' to silence this warning double delta; ^ = 0.0 1 warning generated. CC kkutils.lo CC matrix_ops.lo CC embed_graph.lo CC dijkstra.lo CC conjgrad.lo CC pca.lo CC closest.lo CC bfs.lo CC constraint.lo CC quad_prog_solve.lo CC smart_ini_x.lo CC constrained_majorization.lo CC opt_arrangement.lo CC overlap.lo CC call_tri.lo CC compute_hierarchy.lo CC delaunay.lo CC multispline.lo CCLD libneatogen_C.la make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in twopigen CC twopiinit.lo CC circle.lo CCLD libtwopigen_C.la make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in sfdpgen CC sfdpinit.lo CC spring_electrical.lo spring_electrical.c:287:10: warning: explicitly assigning a variable of type 'double' to itself [-Wself-assign] step = step; ~~~~ ^ ~~~~ spring_electrical.c:1308:16: warning: use of unary operator that may be intended as compound assignment (-=) nsuper_avg =- 0; ^~ spring_electrical.c:1548:16: warning: use of unary operator that may be intended as compound assignment (-=) nsuper_avg =- 0; ^~ 3 warnings generated. CC LinkedList.lo CC sparse_solve.lo CC post_process.lo CC stress_model.lo CC uniform_stress.lo CC QuadTree.lo CC Multilevel.lo CC PriorityQueue.lo CCLD libsfdpgen_C.la make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in osage CC osageinit.lo CCLD libosage_C.la make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. Making install in plugin Making install in core CC gvplugin_core.lo CC gvrender_core_dot.lo CC gvrender_core_fig.lo CC gvrender_core_map.lo CC gvrender_core_ps.lo CC gvrender_core_svg.lo CC gvrender_core_tk.lo CC gvrender_core_vml.lo CC gvloadimage_core.lo CCLD libgvplugin_core_C.la CCLD libgvplugin_core.la ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/graphviz' /bin/sh ../../libtool --mode=install /usr/bin/install -c libgvplugin_core.la '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/graphviz' libtool: install: /usr/bin/install -c .libs/libgvplugin_core.lai /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_core.la libtool: install: /usr/bin/install -c .libs/libgvplugin_core.a /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_core.a libtool: install: chmod 644 /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_core.a libtool: install: ranlib /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_core.a ---------------------------------------------------------------------- Libraries have been installed in: /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/graphviz If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable during execution See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[4]: Nothing to be done for `install-data-am'. Making install in dot_layout CC gvplugin_dot_layout.lo CC gvlayout_dot_layout.lo gvlayout_dot_layout.c:45:13: warning: unknown pragma ignored [-Wunknown-pragmas] #pragma comment( lib, "graph.lib" ) ^ gvlayout_dot_layout.c:46:13: warning: unknown pragma ignored [-Wunknown-pragmas] #pragma comment( lib, "dotgen.lib" ) ^ 2 warnings generated. CCLD libgvplugin_dot_layout_C.la CCLD libgvplugin_dot_layout.la ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/graphviz' /bin/sh ../../libtool --mode=install /usr/bin/install -c libgvplugin_dot_layout.la '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/graphviz' libtool: install: /usr/bin/install -c .libs/libgvplugin_dot_layout.lai /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_dot_layout.la libtool: install: /usr/bin/install -c .libs/libgvplugin_dot_layout.a /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_dot_layout.a libtool: install: chmod 644 /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_dot_layout.a libtool: install: ranlib /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_dot_layout.a ---------------------------------------------------------------------- Libraries have been installed in: /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/graphviz If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable during execution See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[4]: Nothing to be done for `install-data-am'. Making install in neato_layout CC gvplugin_neato_layout.lo CC gvlayout_neato_layout.lo CCLD libgvplugin_neato_layout_C.la /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libgvplugin_neato_layout_C.a(dbg.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libgvplugin_neato_layout_C.a(dbg.o) has no symbols CCLD libgvplugin_neato_layout.la /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libgvplugin_neato_layout.a(dbg.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: .libs/libgvplugin_neato_layout.a(dbg.o) has no symbols ../../config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/graphviz' /bin/sh ../../libtool --mode=install /usr/bin/install -c libgvplugin_neato_layout.la '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/graphviz' libtool: install: /usr/bin/install -c .libs/libgvplugin_neato_layout.lai /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_neato_layout.la libtool: install: /usr/bin/install -c .libs/libgvplugin_neato_layout.a /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_neato_layout.a libtool: install: chmod 644 /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_neato_layout.a libtool: install: ranlib /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_neato_layout.a /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/graphviz/libgvplugin_neato_layout.a(dbg.o) has no symbols ---------------------------------------------------------------------- Libraries have been installed in: /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/graphviz If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable during execution See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[4]: Nothing to be done for `install-data-am'. make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[3]: Nothing to be done for `install-exec-am'. config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/man/man7' /usr/bin/install -c -m 644 graphviz.7 '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/man/man7' config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz' /usr/bin/install -c -m 644 graphviz_version.h '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz' config/install-sh -c -d '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/graphviz/doc' /usr/bin/install -c -m 644 AUTHORS COPYING ChangeLog NEWS cpl1.0.txt '/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/share/graphviz/doc' cp: /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/graphviz is a directory (not copied). cp: /sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/lib/pkgconfig is a directory (not copied). checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for deflateBound in -lz... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for whether compiler has bool... yes configure: Using the following compilation and linking flags for Rgraphviz configure: PKG_CFLAGS= -I/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz configure: PKG_LIBS=libxdot.a libgvplugin_dot_layout.a libgvplugin_neato_layout.a libgvplugin_core.a libgvc.a libpathplan.a libgraph.a libcdt.a -lz configure: GVIZ_DEFS=-DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 configure: Compiling using Graphviz version: '2.28.0'. configure: Using bundled Graphviz: 'TRUE'. configure: creating ./config.status config.status: creating R/graphviz_build_version.R config.status: creating src/Makevars ** libs flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -I/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fPIC -g -O3 -c LL_funcs.c -o LL_funcs.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -I/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fPIC -g -O3 -c Rgraphviz.c -o Rgraphviz.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -I/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fPIC -g -O3 -c RgraphvizInit.c -o RgraphvizInit.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -I/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fPIC -g -O3 -c agopen.c -o agopen.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -I/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fPIC -g -O3 -c agread.c -o agread.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -I/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fPIC -g -O3 -c agwrite.c -o agwrite.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -I/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fPIC -g -O3 -c bezier.c -o bezier.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -I/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fPIC -g -O3 -c buildEdgeList.c -o buildEdgeList.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -I/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fPIC -g -O3 -c buildNodeList.c -o buildNodeList.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -I/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fPIC -g -O3 -c doLayout.c -o doLayout.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -I/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fPIC -g -O3 -c graphvizVersion.c -o graphvizVersion.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -I/sw/build.build/bioconductor-rgraphviz-r30-2.8.1-1/Rgraphviz/src/libunix/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=28 -DGRAPHVIZ_STATIC -DHAVE_STDBOOL_H=1 -DHAVE_BOOL=1 -fPIC -g -O3 -c init.c -o init.o flag-sort -r gcc -ffor-scope -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib -o Rgraphviz.dylib LL_funcs.o Rgraphviz.o RgraphvizInit.o agopen.o agread.o agwrite.o bezier.o buildEdgeList.o buildNodeList.o doLayout.o graphvizVersion.o init.o libxdot.a libgvplugin_dot_layout.a libgvplugin_neato_layout.a libgvplugin_core.a libgvc.a libpathplan.a libgraph.a libcdt.a -lz -L/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation installing to /sw/build.build/root-bioconductor-rgraphviz-r30-2.8.1-1/sw/lib/R/3.0/site-library/Rgraphviz/libs ** R ** inst ** preparing package for lazy loading Creating a generic function for 'head' from package 'utils' in package 'Rgraphviz' Creating a generic function for 'tail' from package 'utils' in package 'Rgraphviz' Creating a generic function for 'lines' from package 'graphics' in package 'Rgraphviz' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Rgraphviz) install_name_tool -id /sw/lib/R/3.0/site-library/Rgraphviz/libs/Rgraphviz.dylib /sw/build.build/root-bioconductor-rgraphviz-r30-2.8.1-1/sw/lib/R/3.0/site-library/Rgraphviz/libs/Rgraphviz.dylib sudo -u fink-bld [ENV] sh -c /tmp/fink.QMznL /bin/rm -f /sw/build.build/root-bioconductor-rgraphviz-r30-2.8.1-1/sw/info/dir /sw/build.build/root-bioconductor-rgraphviz-r30-2.8.1-1/sw/info/dir.old /sw/build.build/root-bioconductor-rgraphviz-r30-2.8.1-1/sw/share/info/dir /sw/build.build/root-bioconductor-rgraphviz-r30-2.8.1-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-bioconductor-rgraphviz-r30-2.8.1-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `bioconductor-rgraphviz-r30' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/bioconductor-rgraphviz-r30_2.8.1-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-bioconductor-rgraphviz-r30-2.8.1-1 (Reading database ... 9217 files and directories currently installed.) Removing fink-buildlock-bioconductor-rgraphviz-r30-2.8.1-1 ...