printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild bioconductor-xcms-r31 2>&1 The package 'bioconductor-xcms-r31' will be built without being installed. Reading build dependency for bioconductor-xcms-r31-1.30.3-100... Reading dependency for bioconductor-xcms-r31-1.30.3-100... Reading build conflict for bioconductor-xcms-r31-1.30.3-100... The package 'r-base31-dev' will be installed. Reading dependency for r-base31-dev-3.1.1-2... Reading runtime dependency for r-base31-dev-3.1.1-2... The package 'libgettext8-dev' will be installed. Reading dependency for libgettext8-dev-0.18.3.1-2... Reading runtime dependency for libgettext8-dev-0.18.3.1-2... The package 'netcdf-c7' will be installed. Reading dependency for netcdf-c7-4.3.2-2... Reading runtime dependency for netcdf-c7-4.3.2-2... The package 'r-base31' will be installed. Reading dependency for r-base31-3.1.1-2... Reading runtime dependency for r-base31-3.1.1-2... The package 'netcdf-c7-shlibs' will be installed. Reading dependency for netcdf-c7-shlibs-4.3.2-2... Reading runtime dependency for netcdf-c7-shlibs-4.3.2-2... The package 'r-base31-shlibs' will be installed. Reading dependency for r-base31-shlibs-3.1.1-2... Reading runtime dependency for r-base31-shlibs-3.1.1-2... The package 'gettext-bin' will be installed. Reading dependency for gettext-bin-0.18.3.1-2... Reading runtime dependency for gettext-bin-0.18.3.1-2... The package 'netcdf-bin' will be installed. Reading dependency for netcdf-bin-4.3.2-2... Reading runtime dependency for netcdf-bin-4.3.2-2... The package 'flag-sort' will be installed. Reading dependency for flag-sort-0.5-1... Reading runtime dependency for flag-sort-0.5-1... The package 'hdf5.8-shlibs' will be installed. Reading dependency for hdf5.8-shlibs-1.8.13-1... Reading runtime dependency for hdf5.8-shlibs-1.8.13-1... The package 'libcurl4-shlibs' will be installed. Reading dependency for libcurl4-shlibs-7.37.1-1+10.8... Reading runtime dependency for libcurl4-shlibs-7.37.1-1+10.8... The package 'cairo-shlibs' will be installed. Reading dependency for cairo-shlibs-1.12.14-1... Reading runtime dependency for cairo-shlibs-1.12.14-1... The package 'gcc49-shlibs' will be installed. Reading dependency for gcc49-shlibs-4.9.1-1000... Reading runtime dependency for gcc49-shlibs-4.9.1-1000... The package 'glib2-shlibs' will be installed. Reading dependency for glib2-shlibs-2.22.4-8... Reading runtime dependency for glib2-shlibs-2.22.4-8... The package 'libicu48-shlibs' will be installed. Reading dependency for libicu48-shlibs-4.8.1.1-2... Reading runtime dependency for libicu48-shlibs-4.8.1.1-2... The package 'libjpeg9-shlibs' will be installed. Reading dependency for libjpeg9-shlibs-9a-1... Reading runtime dependency for libjpeg9-shlibs-9a-1... The package 'liblzma5-shlibs' will be installed. Reading dependency for liblzma5-shlibs-5.0.5-2... Reading runtime dependency for liblzma5-shlibs-5.0.5-2... The package 'libpng16-shlibs' will be installed. Reading dependency for libpng16-shlibs-1.6.12-1... Reading runtime dependency for libpng16-shlibs-1.6.12-1... The package 'libtiff5-shlibs' will be installed. Reading dependency for libtiff5-shlibs-4.0.3-5... Reading runtime dependency for libtiff5-shlibs-4.0.3-5... The package 'pango1-xft2-ft219-shlibs' will be installed. Reading dependency for pango1-xft2-ft219-shlibs-1.24.5-9... Reading runtime dependency for pango1-xft2-ft219-shlibs-1.24.5-9... The package 'libpcre1-shlibs' will be installed. Reading dependency for libpcre1-shlibs-8.35-1... Reading runtime dependency for libpcre1-shlibs-8.35-1... The package 'readline6-shlibs' will be installed. Reading dependency for readline6-shlibs-6.3.6-1... Reading runtime dependency for readline6-shlibs-6.3.6-1... The package 'tcltk' will be installed. Reading dependency for tcltk-8.6.1-104... Reading runtime dependency for tcltk-8.6.1-104... The package 'szip-shlibs' will be installed. Reading dependency for szip-shlibs-2.1-3... Reading runtime dependency for szip-shlibs-2.1-3... The package 'librtmp-shlibs' will be installed. Reading dependency for librtmp-shlibs-2.3-4... Reading runtime dependency for librtmp-shlibs-2.3-4... The package 'libssh2.1-shlibs' will be installed. Reading dependency for libssh2.1-shlibs-1.4.3-1... Reading runtime dependency for libssh2.1-shlibs-1.4.3-1... The package 'fontconfig2-shlibs' will be installed. Reading dependency for fontconfig2-shlibs-2.10.2-1... Reading runtime dependency for fontconfig2-shlibs-2.10.2-1... The package 'freetype219-shlibs' will be installed. Reading dependency for freetype219-shlibs-2.4.12-1... Reading runtime dependency for freetype219-shlibs-2.4.12-1... The package 'pixman-shlibs' will be installed. Reading dependency for pixman-shlibs-0.32.4-1... Reading runtime dependency for pixman-shlibs-0.32.4-1... The package 'xdg-base' will be installed. Reading dependency for xdg-base-0.8-2... Reading runtime dependency for xdg-base-0.8-2... The package 'libjbig-shlibs' will be installed. Reading dependency for libjbig-shlibs-2.0-1... Reading runtime dependency for libjbig-shlibs-2.0-1... The package 'libthai-shlibs' will be installed. Reading dependency for libthai-shlibs-0.1.20-1... Reading runtime dependency for libthai-shlibs-0.1.20-1... The package 'xft2-shlibs' will be installed. Reading dependency for xft2-shlibs-2.2.0-3... Reading runtime dependency for xft2-shlibs-2.2.0-3... The package 'tcltk-shlibs' will be installed. Reading dependency for tcltk-shlibs-8.6.1-104... Reading runtime dependency for tcltk-shlibs-8.6.1-104... The package 'openssl100-shlibs' will be installed. Reading dependency for openssl100-shlibs-1.0.1h-1... Reading runtime dependency for openssl100-shlibs-1.0.1h-1... The package 'fontconfig-config' will be installed. Reading dependency for fontconfig-config-2.10.2-1... Reading runtime dependency for fontconfig-config-2.10.2-1... The package 'expat1-shlibs' will be installed. Reading dependency for expat1-shlibs-2.1.0-1... Reading runtime dependency for expat1-shlibs-2.1.0-1... The package 'libdatrie1-shlibs' will be installed. Reading dependency for libdatrie1-shlibs-0.2.8-2... Reading runtime dependency for libdatrie1-shlibs-0.2.8-2... The package 'libthai' will be installed. Reading dependency for libthai-0.1.20-1... Reading runtime dependency for libthai-0.1.20-1... The following package will be rebuilt: bioconductor-xcms-r31 The following 39 additional packages will be installed: cairo-shlibs expat1-shlibs flag-sort fontconfig-config fontconfig2-shlibs freetype219-shlibs gcc49-shlibs gettext-bin glib2-shlibs hdf5.8-shlibs libcurl4-shlibs libdatrie1-shlibs libgettext8-dev libicu48-shlibs libjbig-shlibs libjpeg9-shlibs liblzma5-shlibs libpcre1-shlibs libpng16-shlibs librtmp-shlibs libssh2.1-shlibs libthai libthai-shlibs libtiff5-shlibs netcdf-bin netcdf-c7 netcdf-c7-shlibs openssl100-shlibs pango1-xft2-ft219-shlibs pixman-shlibs r-base31 r-base31-dev r-base31-shlibs readline6-shlibs szip-shlibs tcltk tcltk-shlibs xdg-base xft2-shlibs Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/xcms_1.30.3.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 curl: (22) The requested URL returned error: 404 Not Found ### execution of curl failed, exit code 22 Downloading the file "xcms_1.30.3.tar.gz" failed. (1) Give up (2) Retry the same mirror (3) Retry another mirror from your country (4) Retry another mirror from your continent (5) Retry another mirror (6) Retry using original source URL How do you want to proceed? [3] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.sjc.ca.us.finkmirrors.net/xcms_1.30.3.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 curl: (22) The requested URL returned error: 404 Not Found ### execution of curl failed, exit code 22 Downloading the file "xcms_1.30.3.tar.gz" failed. (1) Give up (2) Retry the same mirror (3) Retry another mirror from your continent (4) Retry another mirror (5) Retry using original source URL How do you want to proceed? [5] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://bioconductor.org/packages/2.9/bioc/src/contrib/xcms_1.30.3.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 1903k 0 994 0 0 2324 0 0:13:58 --:--:-- 0:13:58 2322 45 1903k 45 862k 0 0 616k 0 0:00:03 0:00:01 0:00:02 616k 100 1903k 100 1903k 0 0 843k 0 0:00:02 0:00:02 --:--:-- 844k Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/expat1-shlibs_2.1.0-1_darwin-x86_64.deb Selecting previously deselected package expat1-shlibs. (Reading database ... 4296 files and directories currently installed.) Unpacking expat1-shlibs (from .../expat1-shlibs_2.1.0-1_darwin-x86_64.deb) ... Setting up expat1-shlibs (2.1.0-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/flag-sort_0.5-1_darwin-x86_64.deb Selecting previously deselected package flag-sort. (Reading database ... 4301 files and directories currently installed.) Unpacking flag-sort (from .../flag-sort_0.5-1_darwin-x86_64.deb) ... Setting up flag-sort (0.5-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/freetype219-shlibs_2.4.12-1_darwin-x86_64.deb Selecting previously deselected package freetype219-shlibs. (Reading database ... 4302 files and directories currently installed.) Unpacking freetype219-shlibs (from .../freetype219-shlibs_2.4.12-1_darwin-x86_64.deb) ... Setting up freetype219-shlibs (2.4.12-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/gcc49-shlibs_4.9.1-1000_darwin-x86_64.deb Selecting previously deselected package gcc49-shlibs. (Reading database ... 4313 files and directories currently installed.) Unpacking gcc49-shlibs (from .../gcc49-shlibs_4.9.1-1000_darwin-x86_64.deb) ... Setting up gcc49-shlibs (4.9.1-1000) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libdatrie1-shlibs_0.2.8-2_darwin-x86_64.deb Selecting previously deselected package libdatrie1-shlibs. (Reading database ... 4358 files and directories currently installed.) Unpacking libdatrie1-shlibs (from .../libdatrie1-shlibs_0.2.8-2_darwin-x86_64.deb) ... Setting up libdatrie1-shlibs (0.2.8-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/libgettext8-dev_0.18.3.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/base/gettext-bin_0.18.3.1-2_darwin-x86_64.deb Selecting previously deselected package libgettext8-dev. (Reading database ... 4365 files and directories currently installed.) Unpacking libgettext8-dev (from .../libgettext8-dev_0.18.3.1-2_darwin-x86_64.deb) ... Selecting previously deselected package gettext-bin. Unpacking gettext-bin (from .../gettext-bin_0.18.3.1-2_darwin-x86_64.deb) ... Setting up gettext-bin (0.18.3.1-2) ... Setting up libgettext8-dev (0.18.3.1-2) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libicu48-shlibs_4.8.1.1-2_darwin-x86_64.deb Selecting previously deselected package libicu48-shlibs. (Reading database ... 4459 files and directories currently installed.) Unpacking libicu48-shlibs (from .../libicu48-shlibs_4.8.1.1-2_darwin-x86_64.deb) ... Setting up libicu48-shlibs (4.8.1.1-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjbig-shlibs_2.0-1_darwin-x86_64.deb Selecting previously deselected package libjbig-shlibs. (Reading database ... 4473 files and directories currently installed.) Unpacking libjbig-shlibs (from .../libjbig-shlibs_2.0-1_darwin-x86_64.deb) ... Setting up libjbig-shlibs (2.0-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjpeg9-shlibs_9a-1_darwin-x86_64.deb Selecting previously deselected package libjpeg9-shlibs. (Reading database ... 4480 files and directories currently installed.) Unpacking libjpeg9-shlibs (from .../libjpeg9-shlibs_9a-1_darwin-x86_64.deb) ... Setting up libjpeg9-shlibs (9a-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/utils/liblzma5-shlibs_5.0.5-2_darwin-x86_64.deb Selecting previously deselected package liblzma5-shlibs. (Reading database ... 4483 files and directories currently installed.) Unpacking liblzma5-shlibs (from .../liblzma5-shlibs_5.0.5-2_darwin-x86_64.deb) ... Setting up liblzma5-shlibs (5.0.5-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libpcre1-shlibs_8.35-1_darwin-x86_64.deb Selecting previously deselected package libpcre1-shlibs. (Reading database ... 4494 files and directories currently installed.) Unpacking libpcre1-shlibs (from .../libpcre1-shlibs_8.35-1_darwin-x86_64.deb) ... Setting up libpcre1-shlibs (8.35-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libpng16-shlibs_1.6.12-1_darwin-x86_64.deb Selecting previously deselected package libpng16-shlibs. (Reading database ... 4507 files and directories currently installed.) Unpacking libpng16-shlibs (from .../libpng16-shlibs_1.6.12-1_darwin-x86_64.deb) ... Setting up libpng16-shlibs (1.6.12-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libthai-shlibs_0.1.20-1_darwin-x86_64.deb /sw/fink/debs/libthai_0.1.20-1_darwin-x86_64.deb Selecting previously deselected package libthai-shlibs. (Reading database ... 4515 files and directories currently installed.) Unpacking libthai-shlibs (from .../libthai-shlibs_0.1.20-1_darwin-x86_64.deb) ... Selecting previously deselected package libthai. Unpacking libthai (from .../libthai_0.1.20-1_darwin-x86_64.deb) ... Setting up libthai (0.1.20-1) ... Setting up libthai-shlibs (0.1.20-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/libtiff5-shlibs_4.0.3-5_darwin-x86_64.deb Selecting previously deselected package libtiff5-shlibs. (Reading database ... 4530 files and directories currently installed.) Unpacking libtiff5-shlibs (from .../libtiff5-shlibs_4.0.3-5_darwin-x86_64.deb) ... Setting up libtiff5-shlibs (4.0.3-5) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/openssl100-shlibs_1.0.1h-1_darwin-x86_64.deb Selecting previously deselected package openssl100-shlibs. (Reading database ... 4535 files and directories currently installed.) Unpacking openssl100-shlibs (from .../openssl100-shlibs_1.0.1h-1_darwin-x86_64.deb) ... Setting up openssl100-shlibs (1.0.1h-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/pixman-shlibs_0.32.4-1_darwin-x86_64.deb Selecting previously deselected package pixman-shlibs. (Reading database ... 4556 files and directories currently installed.) Unpacking pixman-shlibs (from .../pixman-shlibs_0.32.4-1_darwin-x86_64.deb) ... Setting up pixman-shlibs (0.32.4-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/readline6-shlibs_6.3.6-1_darwin-x86_64.deb Selecting previously deselected package readline6-shlibs. (Reading database ... 4560 files and directories currently installed.) Unpacking readline6-shlibs (from .../readline6-shlibs_6.3.6-1_darwin-x86_64.deb) ... Setting up readline6-shlibs (6.3.6-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/szip-shlibs_2.1-3_darwin-x86_64.deb Selecting previously deselected package szip-shlibs. (Reading database ... 4571 files and directories currently installed.) Unpacking szip-shlibs (from .../szip-shlibs_2.1-3_darwin-x86_64.deb) ... Setting up szip-shlibs (2.1-3) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/xdg-base_0.8-2_darwin-x86_64.deb Selecting previously deselected package xdg-base. (Reading database ... 4577 files and directories currently installed.) Unpacking xdg-base (from .../xdg-base_0.8-2_darwin-x86_64.deb) ... Setting up xdg-base (0.8-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig2-shlibs_2.10.2-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig-config_2.10.2-1_darwin-x86_64.deb Selecting previously deselected package fontconfig2-shlibs. (Reading database ... 4579 files and directories currently installed.) Unpacking fontconfig2-shlibs (from .../fontconfig2-shlibs_2.10.2-1_darwin-x86_64.deb) ... Selecting previously deselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.10.2-1_darwin-x86_64.deb) ... Setting up fontconfig-config (2.10.2-1) ... Setting up fontconfig2-shlibs (2.10.2-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/glib2-shlibs_2.22.4-8_darwin-x86_64.deb Selecting previously deselected package glib2-shlibs. (Reading database ... 4664 files and directories currently installed.) Unpacking glib2-shlibs (from .../glib2-shlibs_2.22.4-8_darwin-x86_64.deb) ... Setting up glib2-shlibs (2.22.4-8) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/hdf5.8-shlibs_1.8.13-1_darwin-x86_64.deb Selecting previously deselected package hdf5.8-shlibs. (Reading database ... 4883 files and directories currently installed.) Unpacking hdf5.8-shlibs (from .../hdf5.8-shlibs_1.8.13-1_darwin-x86_64.deb) ... Setting up hdf5.8-shlibs (1.8.13-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/net/librtmp-shlibs_2.3-4_darwin-x86_64.deb Selecting previously deselected package librtmp-shlibs. (Reading database ... 4893 files and directories currently installed.) Unpacking librtmp-shlibs (from .../librtmp-shlibs_2.3-4_darwin-x86_64.deb) ... Setting up librtmp-shlibs (2.3-4) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/net/libssh2.1-shlibs_1.4.3-1_darwin-x86_64.deb Selecting previously deselected package libssh2.1-shlibs. (Reading database ... 4898 files and directories currently installed.) Unpacking libssh2.1-shlibs (from .../libssh2.1-shlibs_1.4.3-1_darwin-x86_64.deb) ... Setting up libssh2.1-shlibs (1.4.3-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/xft2-shlibs_2.2.0-3_darwin-x86_64.deb Selecting previously deselected package xft2-shlibs. (Reading database ... 4906 files and directories currently installed.) Unpacking xft2-shlibs (from .../xft2-shlibs_2.2.0-3_darwin-x86_64.deb) ... Setting up xft2-shlibs (2.2.0-3) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/cairo-shlibs_1.12.14-1_darwin-x86_64.deb Selecting previously deselected package cairo-shlibs. (Reading database ... 4915 files and directories currently installed.) Unpacking cairo-shlibs (from .../cairo-shlibs_1.12.14-1_darwin-x86_64.deb) ... Setting up cairo-shlibs (1.12.14-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/net/libcurl4-shlibs_7.37.1-1+10.8_darwin-x86_64.deb Selecting previously deselected package libcurl4-shlibs. (Reading database ... 4934 files and directories currently installed.) Unpacking libcurl4-shlibs (from .../libcurl4-shlibs_7.37.1-1+10.8_darwin-x86_64.deb) ... Setting up libcurl4-shlibs (7.37.1-1+10.8) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/netcdf-c7_4.3.2-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/netcdf-c7-shlibs_4.3.2-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/netcdf-bin_4.3.2-2_darwin-x86_64.deb Selecting previously deselected package netcdf-c7. (Reading database ... 4940 files and directories currently installed.) Unpacking netcdf-c7 (from .../netcdf-c7_4.3.2-2_darwin-x86_64.deb) ... Selecting previously deselected package netcdf-c7-shlibs. Unpacking netcdf-c7-shlibs (from .../netcdf-c7-shlibs_4.3.2-2_darwin-x86_64.deb) ... Selecting previously deselected package netcdf-bin. Unpacking netcdf-bin (from .../netcdf-bin_4.3.2-2_darwin-x86_64.deb) ... Setting up netcdf-c7-shlibs (4.3.2-2) ... Setting up netcdf-bin (4.3.2-2) ... Setting up netcdf-c7 (4.3.2-2) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/gnome/pango1-xft2-ft219-shlibs_1.24.5-9_darwin-x86_64.deb Selecting previously deselected package pango1-xft2-ft219-shlibs. (Reading database ... 4997 files and directories currently installed.) Unpacking pango1-xft2-ft219-shlibs (from .../pango1-xft2-ft219-shlibs_1.24.5-9_darwin-x86_64.deb) ... Setting up pango1-xft2-ft219-shlibs (1.24.5-9) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/tcltk_8.6.1-104_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/tcltk-shlibs_8.6.1-104_darwin-x86_64.deb Selecting previously deselected package tcltk. (Reading database ... 5041 files and directories currently installed.) Unpacking tcltk (from .../tcltk_8.6.1-104_darwin-x86_64.deb) ... Selecting previously deselected package tcltk-shlibs. Unpacking tcltk-shlibs (from .../tcltk-shlibs_8.6.1-104_darwin-x86_64.deb) ... Setting up tcltk-shlibs (8.6.1-104) ... Setting up tcltk (8.6.1-104) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base31_3.1.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base31-shlibs_3.1.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base31-dev_3.1.1-2_darwin-x86_64.deb Selecting previously deselected package r-base31. (Reading database ... 5516 files and directories currently installed.) Unpacking r-base31 (from .../r-base31_3.1.1-2_darwin-x86_64.deb) ... Selecting previously deselected package r-base31-shlibs. Unpacking r-base31-shlibs (from .../r-base31-shlibs_3.1.1-2_darwin-x86_64.deb) ... Selecting previously deselected package r-base31-dev. Unpacking r-base31-dev (from .../r-base31-dev_3.1.1-2_darwin-x86_64.deb) ... Setting up r-base31-shlibs (3.1.1-2) ... Setting up r-base31-dev (3.1.1-2) ... Setting up r-base31 (3.1.1-2) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-bioconductor-xcms-r31-1.30.3-100 /sw/build.build dpkg-deb: building package `fink-buildlock-bioconductor-xcms-r31-1.30.3-100' in `/sw/build.build/fink-buildlock-bioconductor-xcms-r31-1.30.3-100_2014.07.31-06.18.04_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-bioconductor-xcms-r31-1.30.3-100_2014.07.31-06.18.04_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-bioconductor-xcms-r31-1.30.3-100. (Reading database ... 7483 files and directories currently installed.) Unpacking fink-buildlock-bioconductor-xcms-r31-1.30.3-100 (from .../fink-buildlock-bioconductor-xcms-r31-1.30.3-100_2014.07.31-06.18.04_darwin-x86_64.deb) ... Setting up fink-buildlock-bioconductor-xcms-r31-1.30.3-100 (2014.07.31-06.18.04) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.qEFWs env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/xcms_1.30.3.tar.gz xcms/ xcms/src/ xcms/src/fastMatch.c xcms/src/mzROI.c xcms/src/obiwarp/ xcms/src/obiwarp/xcms_obiwarp.cpp xcms/src/obiwarp/mat.cpp xcms/src/obiwarp/vec.h xcms/src/obiwarp/xcms_lmat.cpp xcms/src/obiwarp/mat.h xcms/src/obiwarp/xcms_dynprog.cpp xcms/src/obiwarp/lmat.h xcms/src/obiwarp/xcms_dynprog.h xcms/src/obiwarp/vec.cpp xcms/src/netCDF.h xcms/src/netCDF.c xcms/src/ramp_base64.cpp xcms/src/binarySearch.h xcms/src/mzClust_hclust.c xcms/src/ramp.cpp xcms/src/Makevars xcms/src/rampR.cpp xcms/src/xcms.c xcms/src/ramp.h xcms/src/ramp_base64.h xcms/src/Makevars.win xcms/src/win/ xcms/src/win/x64/ xcms/src/win/x64/zlib.h xcms/src/win/x64/netcdf.h xcms/src/win/x64/libz.a xcms/src/win/x64/libnetcdf.a xcms/src/win/x64/zconf.h xcms/src/win/i386/ xcms/src/win/i386/zlib.h xcms/src/win/i386/netcdf.h xcms/src/win/i386/libz.a xcms/src/win/i386/libnetcdf.a xcms/src/win/i386/zconf.h xcms/src/xcms.h xcms/src/util.h xcms/src/massifquant/ xcms/src/massifquant/Tracker.h xcms/src/massifquant/OpOverload.h xcms/src/massifquant/dpq.h xcms/src/massifquant/SegProc.cpp xcms/src/massifquant/DataKeeper.h xcms/src/massifquant/OpOverload.cpp xcms/src/massifquant/TrMgr.cpp xcms/src/massifquant/Tracker.cpp xcms/src/massifquant/SegProc.h xcms/src/massifquant/xcms_massifquant.cpp xcms/src/massifquant/DataKeeper.cpp xcms/src/massifquant/TrMgr.h xcms/src/massifquant/nmath.h xcms/src/util.c xcms/DESCRIPTION xcms/.gitignore xcms/LICENSE xcms/NAMESPACE xcms/man/ xcms/man/xcmsPeaks-class.Rd xcms/man/specDist.cosine-methods.Rd xcms/man/findPeaks.centWave-methods.Rd xcms/man/specNoise.Rd xcms/man/split.xcmsSet.Rd xcms/man/split.xcmsRaw.Rd xcms/man/xcmsRaw.Rd xcms/man/sampnames-methods.Rd xcms/man/plotEIC-methods.Rd xcms/man/profStep-methods.Rd xcms/man/retcor.obiwarp-methods.Rd xcms/man/absent-methods.Rd xcms/man/getEIC-methods.Rd xcms/man/profMethod-methods.Rd xcms/man/plotChrom-methods.Rd xcms/man/SSgauss.Rd xcms/man/getScan-methods.Rd xcms/man/profMedFilt-methods.Rd xcms/man/profRange-methods.Rd xcms/man/doubleMatrix.Rd xcms/man/getPeaks-methods.Rd xcms/man/fillPeaks.chrom-methods.Rd xcms/man/xcmsSet-class.Rd xcms/man/findEqualGreater.Rd xcms/man/na.flatfill.Rd xcms/man/specPeaks.Rd xcms/man/retexp.Rd xcms/man/plotSpec-methods.Rd xcms/man/group-methods.Rd xcms/man/group.nearest.Rd xcms/man/AutoLockMass-methods.Rd xcms/man/collect-methods.Rd xcms/man/retcor.peakgroups-methods.Rd xcms/man/findPeaks.massifquant-methods.Rd xcms/man/stitch-methods.Rd xcms/man/specDist.peakCount-methods.Rd xcms/man/findPeaks.matchedFilter-methods.Rd xcms/man/plotSurf-methods.Rd xcms/man/profGenerate.Rd xcms/man/getSpec-methods.Rd xcms/man/xcmsFragments.Rd xcms/man/peakTable-methods.Rd xcms/man/rawEIC-methods.Rd xcms/man/fillPeaks.MSW-methods.Rd xcms/man/specDist-methods.Rd xcms/man/xcmsFragments-class.Rd xcms/man/findPeaks.MS1-methods.Rd xcms/man/write.mzdata-methods.Rd xcms/man/write.cdf-methods.Rd xcms/man/specDist.meanMZmatch-methods.Rd xcms/man/netCDF.Rd xcms/man/medianFilter.Rd xcms/man/group.mzClust.Rd xcms/man/plotPeaks-methods.Rd xcms/man/retcor-methods.Rd xcms/man/colMax.Rd xcms/man/plotScan-methods.Rd xcms/man/panel.cor.Rd xcms/man/findPeaks.MSW-methods.Rd xcms/man/findPeaks-methods.Rd xcms/man/groupval-methods.Rd xcms/man/c.xcmsSet.Rd xcms/man/plot.xcmsEIC.Rd xcms/man/xcmsSet.Rd xcms/man/xcmsEIC-class.Rd xcms/man/etg.Rd xcms/man/plotTIC-methods.Rd xcms/man/xcmsPapply.Rd xcms/man/fillPeaks-methods.Rd xcms/man/pval.Rd xcms/man/descendZero.Rd xcms/man/rawMat-methods.Rd xcms/man/filtfft.Rd xcms/man/findneutral.Rd xcms/man/ramp.Rd xcms/man/rectUnique.Rd xcms/man/plotrt-methods.Rd xcms/man/groupnames-methods.Rd xcms/man/xcmsRaw-class.Rd xcms/man/image.xcmsRaw.Rd xcms/man/peakPlots-methods.Rd xcms/man/findMZ.Rd xcms/man/group.density.Rd xcms/man/calibrate.Rd xcms/man/plotRaw-methods.Rd xcms/man/diffreport-methods.Rd xcms/inst/ xcms/inst/NEWS xcms/inst/unitTests/ xcms/inst/unitTests/runit.splitCombine.R xcms/inst/unitTests/runit.findPeaksCentWave.fitGauss.plot.R xcms/inst/unitTests/runit.specDist.R xcms/inst/unitTests/runit.snames.R xcms/inst/unitTests/runit.rawMat.R xcms/inst/unitTests/runit.fillPeaks.R xcms/inst/unitTests/runit.writemzdata.R xcms/inst/unitTests/runit.absentPresent.R xcms/inst/unitTests/runit.getEIC.R xcms/inst/unitTests/runit.xcmsRawCopy.R xcms/inst/unitTests/runit.msms.R xcms/inst/unitTests/runit.ramp.R xcms/inst/unitTests/runit.phenoData.R xcms/inst/unitTests/runit.splitRaw.R xcms/inst/unitTests/runit.obiwarp.R xcms/inst/unitTests/runit.diffreport.R xcms/inst/unitTests/runit.unusedGroups.R xcms/inst/doc/ xcms/inst/doc/xcmsMSn.pdf xcms/inst/doc/xcmsDirect.pdf xcms/inst/doc/FlowChart.pdf xcms/inst/doc/xcms.bib xcms/inst/doc/xcmsMSn.Rnw xcms/inst/doc/FlowChart.graffle xcms/inst/doc/xcmsInstall.Rnw xcms/inst/doc/xcmsPreprocess.Rnw xcms/inst/doc/xcmsDirect.Rnw xcms/inst/doc/xcmsInstall.pdf xcms/inst/doc/xcmsPreprocess.pdf xcms/inst/CITATION xcms/checkoutpwiz.sh xcms/R/ xcms/R/00xcmsFragments-class.R xcms/R/models.R xcms/R/cwTools.R xcms/R/matchpeaks.R xcms/R/ramp.R xcms/R/00xcmsRaw-class.R xcms/R/init.R xcms/R/xcmsEIC.R xcms/R/unix/ xcms/R/unix/zzz.R xcms/R/00xcmsEIC-class.R xcms/R/present.R xcms/R/specDist.R xcms/R/databases.R xcms/R/xcmsFragments.R xcms/R/c.R xcms/R/mzClust.R xcms/R/MPI.R xcms/R/netCDF.R xcms/R/00xcmsSet-class.R xcms/R/fastMatch.R xcms/R/CleanData.R xcms/R/xcmsSet.R xcms/R/windows/ xcms/R/windows/zzz.R xcms/R/xcmsRaw.R xcms/R/writemzdata.R xcms/CHANGELOG xcms/tests/ xcms/tests/doRUnit.R sudo -u fink-bld [ENV] sh -c /tmp/fink.dNcmL /tmp/fink.HjnKQ #!/bin/bash -ev export TMPDIR=/sw/build.build/bioconductor-xcms-r31-1.30.3-100/xcms/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R pushd .. /sw/build.build/bioconductor-xcms-r31-1.30.3-100 /sw/build.build/bioconductor-xcms-r31-1.30.3-100/xcms $BIN_R --verbose CMD build --no-build-vignettes xcms * checking for file 'xcms/DESCRIPTION' ... OK * preparing 'xcms': * checking DESCRIPTION meta-information ... OK * cleaning src * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building 'xcms_1.30.3.tar.gz' /bin/rm -rf /sw/build.build/root-bioconductor-xcms-r31-1.30.3-100 /bin/mkdir -p /sw/build.build/root-bioconductor-xcms-r31-1.30.3-100/sw /bin/mkdir -p /sw/build.build/root-bioconductor-xcms-r31-1.30.3-100/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-bioconductor-xcms-r31-1.30.3-100 sudo -u fink-bld [ENV] sh -c /tmp/fink.A9tL3 /tmp/fink.9LagE #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R mkdir -p /sw/build.build/root-bioconductor-xcms-r31-1.30.3-100/sw/lib/R/3.1/site-library pushd /sw/build.build/bioconductor-xcms-r31-1.30.3-100/xcms/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-bioconductor-xcms-r31-1.30.3-100/sw/lib/R/3.1/site-library xcms /sw/build.build/bioconductor-xcms-r31-1.30.3-100 /sw/build.build/bioconductor-xcms-r31-1.30.3-100/xcms * installing *source* package 'xcms' ... ** libs rm -f massifquant/xcms_massifquant.o massifquant/TrMgr.o massifquant/Tracker.o massifquant/SegProc.o massifquant/DataKeeper.o massifquant/OpOverload.o obiwarp/mat.o obiwarp/vec.o obiwarp/xcms_dynprog.o obiwarp/xcms_lmat.o obiwarp/xcms_obiwarp.o fastMatch.o mzClust_hclust.o mzROI.o netCDF.o ramp_base64.o ramp.o rampR.o util.o xcms.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/usr/local/include -I/sw/include -D_LARGEFILE_SOURCE -I/sw/include -fPIC -g -O3 -c massifquant/xcms_massifquant.cpp -o massifquant/xcms_massifquant.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/usr/local/include -I/sw/include -D_LARGEFILE_SOURCE -I/sw/include -fPIC -g -O3 -c massifquant/TrMgr.cpp -o massifquant/TrMgr.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/usr/local/include -I/sw/include -D_LARGEFILE_SOURCE -I/sw/include -fPIC -g -O3 -c massifquant/Tracker.cpp -o massifquant/Tracker.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/usr/local/include -I/sw/include -D_LARGEFILE_SOURCE -I/sw/include -fPIC -g -O3 -c massifquant/SegProc.cpp -o massifquant/SegProc.o massifquant/SegProc.cpp:358:19: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] if (n <= 0.0) ML_ERR_return_NAN; ^ massifquant/nmath.h:117:29: note: expanded from macro 'ML_ERR_return_NAN' #define ML_ERR_return_NAN { ML_ERROR(ME_DOMAIN, ""); return ML_NAN; } ^ massifquant/nmath.h:125:21: note: expanded from macro 'ML_ERROR' char *msg = ""; \ ^ 1 warning generated. flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/usr/local/include -I/sw/include -D_LARGEFILE_SOURCE -I/sw/include -fPIC -g -O3 -c massifquant/DataKeeper.cpp -o massifquant/DataKeeper.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/usr/local/include -I/sw/include -D_LARGEFILE_SOURCE -I/sw/include -fPIC -g -O3 -c massifquant/OpOverload.cpp -o massifquant/OpOverload.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/usr/local/include -I/sw/include -D_LARGEFILE_SOURCE -I/sw/include -fPIC -g -O3 -c obiwarp/mat.cpp -o obiwarp/mat.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/usr/local/include -I/sw/include -D_LARGEFILE_SOURCE -I/sw/include -fPIC -g -O3 -c obiwarp/vec.cpp -o obiwarp/vec.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/usr/local/include -I/sw/include -D_LARGEFILE_SOURCE -I/sw/include -fPIC -g -O3 -c obiwarp/xcms_dynprog.cpp -o obiwarp/xcms_dynprog.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/usr/local/include -I/sw/include -D_LARGEFILE_SOURCE -I/sw/include -fPIC -g -O3 -c obiwarp/xcms_lmat.cpp -o obiwarp/xcms_lmat.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/usr/local/include -I/sw/include -D_LARGEFILE_SOURCE -I/sw/include -fPIC -g -O3 -c obiwarp/xcms_obiwarp.cpp -o obiwarp/xcms_obiwarp.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/usr/local/include -I/sw/include -D_LARGEFILE_SOURCE -I/sw/include -fPIC -g -O3 -c fastMatch.c -o fastMatch.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/usr/local/include -I/sw/include -D_LARGEFILE_SOURCE -I/sw/include -fPIC -g -O3 -c mzClust_hclust.c -o mzClust_hclust.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/usr/local/include -I/sw/include -D_LARGEFILE_SOURCE -I/sw/include -fPIC -g -O3 -c mzROI.c -o mzROI.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/usr/local/include -I/sw/include -D_LARGEFILE_SOURCE -I/sw/include -fPIC -g -O3 -c netCDF.c -o netCDF.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/usr/local/include -I/sw/include -D_LARGEFILE_SOURCE -I/sw/include -fPIC -g -O3 -c ramp_base64.cpp -o ramp_base64.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/usr/local/include -I/sw/include -D_LARGEFILE_SOURCE -I/sw/include -fPIC -g -O3 -c ramp.cpp -o ramp.o ramp.cpp:1816:36: warning: expression which evaluates to zero treated as a null pointer constant of type 'const char *' [-Wnon-literal-null-conversion] pEndAttrValue = '\0'; ^~~~ ramp.cpp:1835:35: warning: expression which evaluates to zero treated as a null pointer constant of type 'const char *' [-Wnon-literal-null-conversion] pEndAttrValue = '\0'; ^~~~ 2 warnings generated. flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/usr/local/include -I/sw/include -D_LARGEFILE_SOURCE -I/sw/include -fPIC -g -O3 -c rampR.cpp -o rampR.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/usr/local/include -I/sw/include -D_LARGEFILE_SOURCE -I/sw/include -fPIC -g -O3 -c util.c -o util.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/usr/local/include -I/sw/include -D_LARGEFILE_SOURCE -I/sw/include -fPIC -g -O3 -c xcms.c -o xcms.o flag-sort -r g++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib -o xcms.dylib massifquant/xcms_massifquant.o massifquant/TrMgr.o massifquant/Tracker.o massifquant/SegProc.o massifquant/DataKeeper.o massifquant/OpOverload.o obiwarp/mat.o obiwarp/vec.o obiwarp/xcms_dynprog.o obiwarp/xcms_lmat.o obiwarp/xcms_obiwarp.o fastMatch.o mzClust_hclust.o mzROI.o netCDF.o ramp_base64.o ramp.o rampR.o util.o xcms.o -L/usr/local/lib -L/sw/lib -L/sw/lib -lnetcdf -lz -L/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation ld: warning: directory not found for option '-L/usr/local/lib' installing to /sw/build.build/root-bioconductor-xcms-r31-1.30.3-100/sw/lib/R/3.1/site-library/xcms/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (xcms) install_name_tool -id /sw/lib/R/3.1/site-library/xcms/libs/xcms.dylib /sw/build.build/root-bioconductor-xcms-r31-1.30.3-100/sw/lib/R/3.1/site-library/xcms/libs/xcms.dylib sudo -u fink-bld [ENV] sh -c /tmp/fink.t2kxY /bin/rm -f /sw/build.build/root-bioconductor-xcms-r31-1.30.3-100/sw/info/dir /sw/build.build/root-bioconductor-xcms-r31-1.30.3-100/sw/info/dir.old /sw/build.build/root-bioconductor-xcms-r31-1.30.3-100/sw/share/info/dir /sw/build.build/root-bioconductor-xcms-r31-1.30.3-100/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-bioconductor-xcms-r31-1.30.3-100 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `bioconductor-xcms-r31' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/bioconductor-xcms-r31_1.30.3-100_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-bioconductor-xcms-r31-1.30.3-100 (Reading database ... 7484 files and directories currently installed.) Removing fink-buildlock-bioconductor-xcms-r31-1.30.3-100 ...