printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild biopython-py27 2>&1 The package 'biopython-py27' will be built without being installed. Reading build dependency for biopython-py27-1.59-1... Reading dependency for biopython-py27-1.59-1... Reading build conflict for biopython-py27-1.59-1... The package 'flex' will be installed. Reading dependency for flex-2.5.4a-4... Reading runtime dependency for flex-2.5.4a-4... The package 'python27' will be installed. Reading dependency for python27-2.7.8-1... Reading runtime dependency for python27-2.7.8-1... The package 'numpy-py27' will be installed. Reading dependency for numpy-py27-1.8.1-1... Reading runtime dependency for numpy-py27-1.8.1-1... The package 'reportlab-py27' will be installed. Reading dependency for reportlab-py27-2.5-1... Reading runtime dependency for reportlab-py27-2.5-1... The package 'python27-shlibs' will be installed. Reading dependency for python27-shlibs-2.7.8-1... Reading runtime dependency for python27-shlibs-2.7.8-1... The package 'blt-shlibs' will be installed. Reading dependency for blt-shlibs-2.4z-160... Reading runtime dependency for blt-shlibs-2.4z-160... The package 'db53-aes-shlibs' will be installed. Reading dependency for db53-aes-shlibs-5.3.21-2... Reading runtime dependency for db53-aes-shlibs-5.3.21-2... The package 'expat1-shlibs' will be installed. Reading dependency for expat1-shlibs-2.1.0-1... Reading runtime dependency for expat1-shlibs-2.1.0-1... The package 'gdbm3-shlibs' will be installed. Reading dependency for gdbm3-shlibs-1.8.3-4... Reading runtime dependency for gdbm3-shlibs-1.8.3-4... The package 'libffi6-shlibs' will be installed. Reading dependency for libffi6-shlibs-3.1-1... Reading runtime dependency for libffi6-shlibs-3.1-1... The package 'libncursesw5-shlibs' will be installed. Reading dependency for libncursesw5-shlibs-5.9-20110507-1... Reading runtime dependency for libncursesw5-shlibs-5.9-20110507-1... The package 'openssl100-shlibs' will be installed. Reading dependency for openssl100-shlibs-1.0.1h-1... Reading runtime dependency for openssl100-shlibs-1.0.1h-1... The package 'readline6-shlibs' will be installed. Reading dependency for readline6-shlibs-6.3.6-1... Reading runtime dependency for readline6-shlibs-6.3.6-1... The package 'sqlite3-shlibs' will be installed. Reading dependency for sqlite3-shlibs-3.8.3.1-1... Reading runtime dependency for sqlite3-shlibs-3.8.3.1-1... The package 'tcltk' will be installed. Reading dependency for tcltk-8.6.1-104... Reading runtime dependency for tcltk-8.6.1-104... The package 'nose-py27' will be installed. Reading dependency for nose-py27-1.3.0-1... Reading runtime dependency for nose-py27-1.3.0-1... The package 'pil-py27' will be installed. Reading dependency for pil-py27-2.5.1-1... Reading runtime dependency for pil-py27-2.5.1-1... The package 'freetype219-shlibs' will be installed. Reading dependency for freetype219-shlibs-2.4.12-1... Reading runtime dependency for freetype219-shlibs-2.4.12-1... The package 'libjpeg9-shlibs' will be installed. Reading dependency for libjpeg9-shlibs-9a-1... Reading runtime dependency for libjpeg9-shlibs-9a-1... The package 'tcltk-shlibs' will be installed. Reading dependency for tcltk-shlibs-8.6.1-104... Reading runtime dependency for tcltk-shlibs-8.6.1-104... The package 'fontconfig2-shlibs' will be installed. Reading dependency for fontconfig2-shlibs-2.10.2-1... Reading runtime dependency for fontconfig2-shlibs-2.10.2-1... The package 'xft2-shlibs' will be installed. Reading dependency for xft2-shlibs-2.2.0-3... Reading runtime dependency for xft2-shlibs-2.2.0-3... The package 'setuptools-tng-py27' will be installed. Reading dependency for setuptools-tng-py27-5.1-1... Reading runtime dependency for setuptools-tng-py27-5.1-1... The package 'cffi-py27' will be installed. Reading dependency for cffi-py27-0.8.6-1... Reading runtime dependency for cffi-py27-0.8.6-1... The package 'lcms2-shlibs' will be installed. Reading dependency for lcms2-shlibs-2.4-2... Reading runtime dependency for lcms2-shlibs-2.4-2... The package 'libtiff5-shlibs' will be installed. Reading dependency for libtiff5-shlibs-4.0.3-5... Reading runtime dependency for libtiff5-shlibs-4.0.3-5... The package 'libwebp5-shlibs' will be installed. Reading dependency for libwebp5-shlibs-0.4.0-1... Reading runtime dependency for libwebp5-shlibs-0.4.0-1... The package 'fontconfig-config' will be installed. Reading dependency for fontconfig-config-2.10.2-1... Reading runtime dependency for fontconfig-config-2.10.2-1... The package 'pycparser-py27' will be installed. Reading dependency for pycparser-py27-2.10-1... Reading runtime dependency for pycparser-py27-2.10-1... The package 'libjbig-shlibs' will be installed. Reading dependency for libjbig-shlibs-2.0-1... Reading runtime dependency for libjbig-shlibs-2.0-1... The package 'liblzma5-shlibs' will be installed. Reading dependency for liblzma5-shlibs-5.0.5-2... Reading runtime dependency for liblzma5-shlibs-5.0.5-2... The following package will be rebuilt: biopython-py27 The following 31 additional packages will be installed: blt-shlibs cffi-py27 db53-aes-shlibs expat1-shlibs flex fontconfig-config fontconfig2-shlibs freetype219-shlibs gdbm3-shlibs lcms2-shlibs libffi6-shlibs libjbig-shlibs libjpeg9-shlibs liblzma5-shlibs libncursesw5-shlibs libtiff5-shlibs libwebp5-shlibs nose-py27 numpy-py27 openssl100-shlibs pil-py27 pycparser-py27 python27 python27-shlibs readline6-shlibs reportlab-py27 setuptools-tng-py27 sqlite3-shlibs tcltk tcltk-shlibs xft2-shlibs Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/biopython-1.59.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 2 8376k 2 173k 0 0 268k 0 0:00:31 --:--:-- 0:00:31 268k 4 8376k 4 336k 0 0 165k 0 0:00:50 0:00:02 0:00:48 165k 8 8376k 8 688k 0 0 184k 0 0:00:45 0:00:03 0:00:42 184k 17 8376k 17 1502k 0 0 324k 0 0:00:25 0:00:04 0:00:21 324k 32 8376k 32 2710k 0 0 482k 0 0:00:17 0:00:05 0:00:12 482k 34 8376k 34 2874k 0 0 420k 0 0:00:19 0:00:06 0:00:13 436k 44 8376k 44 3735k 0 0 490k 0 0:00:17 0:00:07 0:00:10 608k 66 8376k 66 5534k 0 0 641k 0 0:00:13 0:00:08 0:00:05 992k 75 8376k 75 6357k 0 0 660k 0 0:00:12 0:00:09 0:00:03 972k 83 8376k 83 6954k 0 0 654k 0 0:00:12 0:00:10 0:00:02 848k 97 8376k 97 8139k 0 0 700k 0 0:00:11 0:00:11 --:--:-- 1099k 100 8376k 100 8376k 0 0 707k 0 0:00:11 0:00:11 --:--:-- 1102k Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/crypto/db53-aes-shlibs_5.3.21-2_darwin-x86_64.deb Selecting previously deselected package db53-aes-shlibs. (Reading database ... 4296 files and directories currently installed.) Unpacking db53-aes-shlibs (from .../db53-aes-shlibs_5.3.21-2_darwin-x86_64.deb) ... Setting up db53-aes-shlibs (5.3.21-2) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/expat1-shlibs_2.1.0-1_darwin-x86_64.deb Selecting previously deselected package expat1-shlibs. (Reading database ... 4306 files and directories currently installed.) Unpacking expat1-shlibs (from .../expat1-shlibs_2.1.0-1_darwin-x86_64.deb) ... Setting up expat1-shlibs (2.1.0-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/flex_2.5.4a-4_darwin-x86_64.deb Selecting previously deselected package flex. (Reading database ... 4311 files and directories currently installed.) Unpacking flex (from .../flex_2.5.4a-4_darwin-x86_64.deb) ... Setting up flex (2.5.4a-4) ... * Flex: (flex). A fast scanner generator. install-info(/sw/share/info/flex.info): no section specified for new entry, placing at end Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/freetype219-shlibs_2.4.12-1_darwin-x86_64.deb Selecting previously deselected package freetype219-shlibs. (Reading database ... 4323 files and directories currently installed.) Unpacking freetype219-shlibs (from .../freetype219-shlibs_2.4.12-1_darwin-x86_64.deb) ... Setting up freetype219-shlibs (2.4.12-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/gdbm3-shlibs_1.8.3-4_darwin-x86_64.deb Selecting previously deselected package gdbm3-shlibs. (Reading database ... 4334 files and directories currently installed.) Unpacking gdbm3-shlibs (from .../gdbm3-shlibs_1.8.3-4_darwin-x86_64.deb) ... Setting up gdbm3-shlibs (1.8.3-4) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/lcms2-shlibs_2.4-2_darwin-x86_64.deb Selecting previously deselected package lcms2-shlibs. (Reading database ... 4342 files and directories currently installed.) Unpacking lcms2-shlibs (from .../lcms2-shlibs_2.4-2_darwin-x86_64.deb) ... Setting up lcms2-shlibs (2.4-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libffi6-shlibs_3.1-1_darwin-x86_64.deb Selecting previously deselected package libffi6-shlibs. (Reading database ... 4349 files and directories currently installed.) Unpacking libffi6-shlibs (from .../libffi6-shlibs_3.1-1_darwin-x86_64.deb) ... Setting up libffi6-shlibs (3.1-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjbig-shlibs_2.0-1_darwin-x86_64.deb Selecting previously deselected package libjbig-shlibs. (Reading database ... 4350 files and directories currently installed.) Unpacking libjbig-shlibs (from .../libjbig-shlibs_2.0-1_darwin-x86_64.deb) ... Setting up libjbig-shlibs (2.0-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjpeg9-shlibs_9a-1_darwin-x86_64.deb Selecting previously deselected package libjpeg9-shlibs. (Reading database ... 4357 files and directories currently installed.) Unpacking libjpeg9-shlibs (from .../libjpeg9-shlibs_9a-1_darwin-x86_64.deb) ... Setting up libjpeg9-shlibs (9a-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/utils/liblzma5-shlibs_5.0.5-2_darwin-x86_64.deb Selecting previously deselected package liblzma5-shlibs. (Reading database ... 4360 files and directories currently installed.) Unpacking liblzma5-shlibs (from .../liblzma5-shlibs_5.0.5-2_darwin-x86_64.deb) ... Setting up liblzma5-shlibs (5.0.5-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/libncursesw5-shlibs_5.9-20110507-1_darwin-x86_64.deb Selecting previously deselected package libncursesw5-shlibs. (Reading database ... 4371 files and directories currently installed.) Unpacking libncursesw5-shlibs (from .../libncursesw5-shlibs_5.9-20110507-1_darwin-x86_64.deb) ... Setting up libncursesw5-shlibs (5.9-20110507-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/libtiff5-shlibs_4.0.3-5_darwin-x86_64.deb Selecting previously deselected package libtiff5-shlibs. (Reading database ... 4382 files and directories currently installed.) Unpacking libtiff5-shlibs (from .../libtiff5-shlibs_4.0.3-5_darwin-x86_64.deb) ... Setting up libtiff5-shlibs (4.0.3-5) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libwebp5-shlibs_0.4.0-1_darwin-x86_64.deb Selecting previously deselected package libwebp5-shlibs. (Reading database ... 4387 files and directories currently installed.) Unpacking libwebp5-shlibs (from .../libwebp5-shlibs_0.4.0-1_darwin-x86_64.deb) ... Setting up libwebp5-shlibs (0.4.0-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/openssl100-shlibs_1.0.1h-1_darwin-x86_64.deb Selecting previously deselected package openssl100-shlibs. (Reading database ... 4398 files and directories currently installed.) Unpacking openssl100-shlibs (from .../openssl100-shlibs_1.0.1h-1_darwin-x86_64.deb) ... Setting up openssl100-shlibs (1.0.1h-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/readline6-shlibs_6.3.6-1_darwin-x86_64.deb Selecting previously deselected package readline6-shlibs. (Reading database ... 4419 files and directories currently installed.) Unpacking readline6-shlibs (from .../readline6-shlibs_6.3.6-1_darwin-x86_64.deb) ... Setting up readline6-shlibs (6.3.6-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/database/sqlite3-shlibs_3.8.3.1-1_darwin-x86_64.deb Selecting previously deselected package sqlite3-shlibs. (Reading database ... 4430 files and directories currently installed.) Unpacking sqlite3-shlibs (from .../sqlite3-shlibs_3.8.3.1-1_darwin-x86_64.deb) ... Setting up sqlite3-shlibs (3.8.3.1-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig2-shlibs_2.10.2-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig-config_2.10.2-1_darwin-x86_64.deb Selecting previously deselected package fontconfig2-shlibs. (Reading database ... 4434 files and directories currently installed.) Unpacking fontconfig2-shlibs (from .../fontconfig2-shlibs_2.10.2-1_darwin-x86_64.deb) ... Selecting previously deselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.10.2-1_darwin-x86_64.deb) ... Setting up fontconfig-config (2.10.2-1) ... Setting up fontconfig2-shlibs (2.10.2-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/xft2-shlibs_2.2.0-3_darwin-x86_64.deb Selecting previously deselected package xft2-shlibs. (Reading database ... 4519 files and directories currently installed.) Unpacking xft2-shlibs (from .../xft2-shlibs_2.2.0-3_darwin-x86_64.deb) ... Setting up xft2-shlibs (2.2.0-3) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/tcltk_8.6.1-104_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/tcltk-shlibs_8.6.1-104_darwin-x86_64.deb Selecting previously deselected package tcltk. (Reading database ... 4528 files and directories currently installed.) Unpacking tcltk (from .../tcltk_8.6.1-104_darwin-x86_64.deb) ... Selecting previously deselected package tcltk-shlibs. Unpacking tcltk-shlibs (from .../tcltk-shlibs_8.6.1-104_darwin-x86_64.deb) ... Setting up tcltk-shlibs (8.6.1-104) ... Setting up tcltk (8.6.1-104) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/blt-shlibs_2.4z-160_darwin-x86_64.deb Selecting previously deselected package blt-shlibs. (Reading database ... 5004 files and directories currently installed.) Unpacking blt-shlibs (from .../blt-shlibs_2.4z-160_darwin-x86_64.deb) ... Setting up blt-shlibs (2.4z-160) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/python27_2.7.8-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/python27-shlibs_2.7.8-1_darwin-x86_64.deb Selecting previously deselected package python27. (Reading database ... 5010 files and directories currently installed.) Unpacking python27 (from .../python27_2.7.8-1_darwin-x86_64.deb) ... Selecting previously deselected package python27-shlibs. Unpacking python27-shlibs (from .../python27-shlibs_2.7.8-1_darwin-x86_64.deb) ... Setting up python27-shlibs (2.7.8-1) ... Setting up python27 (2.7.8-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/setuptools-tng-py27_5.1-1_darwin-x86_64.deb Selecting previously deselected package setuptools-tng-py27. (Reading database ... 12221 files and directories currently installed.) Unpacking setuptools-tng-py27 (from .../setuptools-tng-py27_5.1-1_darwin-x86_64.deb) ... Setting up setuptools-tng-py27 (5.1-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/nose-py27_1.3.0-1_darwin-x86_64.deb Selecting previously deselected package nose-py27. (Reading database ... 12392 files and directories currently installed.) Unpacking nose-py27 (from .../nose-py27_1.3.0-1_darwin-x86_64.deb) ... Setting up nose-py27 (1.3.0-1) ... Checking available versions of nosetests, updating links in /sw/etc/alternatives ... (You may modify the symlinks there yourself if desired - see `man ln'.) Updating nosetests (/sw/bin/nosetests) to point to /sw/bin/nosetests2.7. Updating nosetests.1 (/sw/share/man/man1/nosetests.1) to point to /sw//share/man/man1/nosetests-py27.1. Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/numpy-py27_1.8.1-1_darwin-x86_64.deb Selecting previously deselected package numpy-py27. (Reading database ... 12577 files and directories currently installed.) Unpacking numpy-py27 (from .../numpy-py27_1.8.1-1_darwin-x86_64.deb) ... Setting up numpy-py27 (1.8.1-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/pycparser-py27_2.10-1_darwin-x86_64.deb Selecting previously deselected package pycparser-py27. (Reading database ... 13355 files and directories currently installed.) Unpacking pycparser-py27 (from .../pycparser-py27_2.10-1_darwin-x86_64.deb) ... Setting up pycparser-py27 (2.10-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/cffi-py27_0.8.6-1_darwin-x86_64.deb Selecting previously deselected package cffi-py27. (Reading database ... 13395 files and directories currently installed.) Unpacking cffi-py27 (from .../cffi-py27_0.8.6-1_darwin-x86_64.deb) ... Setting up cffi-py27 (0.8.6-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/pil-py27_2.5.1-1_darwin-x86_64.deb Selecting previously deselected package pil-py27. (Reading database ... 13432 files and directories currently installed.) Unpacking pil-py27 (from .../pil-py27_2.5.1-1_darwin-x86_64.deb) ... Setting up pil-py27 (2.5.1-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/reportlab-py27_2.5-1_darwin-x86_64.deb Selecting previously deselected package reportlab-py27. (Reading database ... 13694 files and directories currently installed.) Unpacking reportlab-py27 (from .../reportlab-py27_2.5-1_darwin-x86_64.deb) ... Setting up reportlab-py27 (2.5-1) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-biopython-py27-1.59-1 /sw/build.build dpkg-deb: building package `fink-buildlock-biopython-py27-1.59-1' in `/sw/build.build/fink-buildlock-biopython-py27-1.59-1_2014.08.01-10.02.26_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-biopython-py27-1.59-1_2014.08.01-10.02.26_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-biopython-py27-1.59-1. (Reading database ... 14182 files and directories currently installed.) Unpacking fink-buildlock-biopython-py27-1.59-1 (from .../fink-buildlock-biopython-py27-1.59-1_2014.08.01-10.02.26_darwin-x86_64.deb) ... Setting up fink-buildlock-biopython-py27-1.59-1 (2014.08.01-10.02.26) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.J4DcF env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/biopython-1.59.tar.gz biopython-1.59/ biopython-1.59/MANIFEST.in biopython-1.59/README biopython-1.59/NEWS biopython-1.59/do2to3.py biopython-1.59/PKG-INFO biopython-1.59/Tests/ biopython-1.59/Tests/MetaTool/ biopython-1.59/Tests/MetaTool/meta.out biopython-1.59/Tests/MetaTool/Meta3.out biopython-1.59/Tests/MetaTool/meta9.out biopython-1.59/Tests/MetaTool/Meta6.out biopython-1.59/Tests/MetaTool/meta2.out biopython-1.59/Tests/MetaTool/Meta4.out biopython-1.59/Tests/MetaTool/Meta8.out biopython-1.59/Tests/MetaTool/Meta7.out biopython-1.59/Tests/test_SeqIO_online.py biopython-1.59/Tests/test_PopGen_SimCoal.py biopython-1.59/Tests/test_Probcons_tool.py biopython-1.59/Tests/test_CAPS.py biopython-1.59/Tests/PopGen/ biopython-1.59/Tests/PopGen/fdist1 biopython-1.59/Tests/PopGen/haplo.gen biopython-1.59/Tests/PopGen/haplo3.gen biopython-1.59/Tests/PopGen/dout.cpl biopython-1.59/Tests/PopGen/dfdist1 biopython-1.59/Tests/PopGen/README biopython-1.59/Tests/PopGen/out.cpl biopython-1.59/Tests/PopGen/simple.par biopython-1.59/Tests/PopGen/c3space.gen biopython-1.59/Tests/PopGen/dout.dat biopython-1.59/Tests/PopGen/c2space.gen biopython-1.59/Tests/PopGen/data_fst_outfile biopython-1.59/Tests/PopGen/c3line.gen biopython-1.59/Tests/PopGen/big.gen biopython-1.59/Tests/PopGen/c2line.gen biopython-1.59/Tests/PopGen/haplo2.gen biopython-1.59/Tests/PopGen/data_dfst_outfile biopython-1.59/Tests/PopGen/out.dat biopython-1.59/Tests/test_GenBank.py biopython-1.59/Tests/test_EmbossPhylipNew.py biopython-1.59/Tests/test_IsoelectricPoint.py biopython-1.59/Tests/test_PopGen_GenePop_nodepend.py biopython-1.59/Tests/test_GraphicsGeneral.py biopython-1.59/Tests/test_NNGene.py biopython-1.59/Tests/test_NCBIStandalone.py biopython-1.59/Tests/test_GACrossover.py biopython-1.59/Tests/SeqXML/ biopython-1.59/Tests/SeqXML/rna_example.xml biopython-1.59/Tests/SeqXML/corrupt_example1.xml biopython-1.59/Tests/SeqXML/global_species_example.xml biopython-1.59/Tests/SeqXML/protein_example.xml biopython-1.59/Tests/SeqXML/dna_example.xml biopython-1.59/Tests/SeqXML/corrupt_example2.xml biopython-1.59/Tests/test_NCBI_qblast.py biopython-1.59/Tests/test_GAOrganism.py biopython-1.59/Tests/test_Seq_objs.py biopython-1.59/Tests/Emboss/ biopython-1.59/Tests/Emboss/internal_oligo.primer3 biopython-1.59/Tests/Emboss/bac_find.psearch biopython-1.59/Tests/Emboss/NirK.primer3 biopython-1.59/Tests/Emboss/cds_forward.primer3 biopython-1.59/Tests/Emboss/water2.txt biopython-1.59/Tests/Emboss/NirK_full.primer3 biopython-1.59/Tests/Emboss/alignret.txt biopython-1.59/Tests/Emboss/matcher_pair.txt biopython-1.59/Tests/Emboss/needle.txt biopython-1.59/Tests/Emboss/short.primer3 biopython-1.59/Tests/Emboss/cds_reverse.primer3 biopython-1.59/Tests/Emboss/water.txt biopython-1.59/Tests/Emboss/needle_asis.txt biopython-1.59/Tests/Emboss/matcher_simple.txt biopython-1.59/Tests/Emboss/bac_find.primer3 biopython-1.59/Tests/test_GARepair.py biopython-1.59/Tests/Clustalw/ biopython-1.59/Tests/Clustalw/opuntia.aln biopython-1.59/Tests/Clustalw/odd_consensus.aln biopython-1.59/Tests/Clustalw/hedgehog.aln biopython-1.59/Tests/Clustalw/protein.aln biopython-1.59/Tests/Clustalw/promals3d.aln biopython-1.59/Tests/Clustalw/cw02.aln biopython-1.59/Tests/test_GraphicsDistribution.py biopython-1.59/Tests/test_UniGene.py biopython-1.59/Tests/test_LogisticRegression.py biopython-1.59/Tests/Roche/ biopython-1.59/Tests/Roche/paired.sff biopython-1.59/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual biopython-1.59/Tests/Roche/E3MFGYR02_index_in_middle.sff biopython-1.59/Tests/Roche/README.txt biopython-1.59/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff biopython-1.59/Tests/Roche/E3MFGYR02_random_10_reads.fasta biopython-1.59/Tests/Roche/E3MFGYR02_random_10_reads.sff biopython-1.59/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.fasta biopython-1.59/Tests/Roche/E3MFGYR02_index_at_start.sff biopython-1.59/Tests/Roche/E3MFGYR02_alt_index_at_end.sff biopython-1.59/Tests/Roche/E3MFGYR02_no_manifest.sff biopython-1.59/Tests/Roche/E3MFGYR02_alt_index_at_start.sff biopython-1.59/Tests/Roche/greek.sff biopython-1.59/Tests/Roche/E3MFGYR02_random_10_reads.qual biopython-1.59/Tests/Stockholm/ biopython-1.59/Tests/Stockholm/funny.sth biopython-1.59/Tests/Stockholm/simple.sth biopython-1.59/Tests/test_Wise.py biopython-1.59/Tests/test_trie.py biopython-1.59/Tests/test_SeqIO_FastaIO.py biopython-1.59/Tests/EMBL/ biopython-1.59/Tests/EMBL/TRBG361.embl biopython-1.59/Tests/EMBL/SC10H5.embl biopython-1.59/Tests/EMBL/Human_contigs.embl biopython-1.59/Tests/EMBL/epo_prt_selection.embl biopython-1.59/Tests/EMBL/DD231055_edited.embl biopython-1.59/Tests/EMBL/location_wrap.embl biopython-1.59/Tests/EMBL/AAA03323.embl biopython-1.59/Tests/EMBL/AE017046.embl biopython-1.59/Tests/EMBL/A04195.imgt biopython-1.59/Tests/EMBL/U87107.embl biopython-1.59/Tests/Quality/ biopython-1.59/Tests/Quality/solexa_example.fastq biopython-1.59/Tests/Quality/solexa_full_range_as_solexa.fastq biopython-1.59/Tests/Quality/illumina_full_range_as_illumina.fastq biopython-1.59/Tests/Quality/error_trunc_in_title.fastq biopython-1.59/Tests/Quality/illumina_faked.fastq biopython-1.59/Tests/Quality/error_trunc_at_plus.fastq biopython-1.59/Tests/Quality/longreads_as_illumina.fastq biopython-1.59/Tests/Quality/misc_rna_original_sanger.fastq biopython-1.59/Tests/Quality/wrapping_as_solexa.fastq biopython-1.59/Tests/Quality/solexa_faked.fastq biopython-1.59/Tests/Quality/illumina_full_range_as_solexa.fastq biopython-1.59/Tests/Quality/wrapping_as_sanger.fastq biopython-1.59/Tests/Quality/error_trunc_in_seq.fastq biopython-1.59/Tests/Quality/error_trunc_in_qual.fastq biopython-1.59/Tests/Quality/error_qual_null.fastq biopython-1.59/Tests/Quality/error_trunc_at_seq.fastq biopython-1.59/Tests/Quality/misc_rna_as_solexa.fastq biopython-1.59/Tests/Quality/sanger_full_range_as_sanger.fastq biopython-1.59/Tests/Quality/sanger_faked.fastq biopython-1.59/Tests/Quality/misc_dna_as_solexa.fastq biopython-1.59/Tests/Quality/solexa_full_range_as_illumina.fastq biopython-1.59/Tests/Quality/error_diff_ids.fastq biopython-1.59/Tests/Quality/solexa_full_range_original_solexa.fastq biopython-1.59/Tests/Quality/misc_dna_as_sanger.fastq biopython-1.59/Tests/Quality/misc_dna_as_illumina.fastq biopython-1.59/Tests/Quality/example.qual biopython-1.59/Tests/Quality/error_no_qual.fastq biopython-1.59/Tests/Quality/misc_dna_original_sanger.fastq biopython-1.59/Tests/Quality/sanger_full_range_as_solexa.fastq biopython-1.59/Tests/Quality/error_qual_space.fastq biopython-1.59/Tests/Quality/longreads_as_sanger.fastq biopython-1.59/Tests/Quality/error_double_seq.fastq biopython-1.59/Tests/Quality/sanger_93.fastq biopython-1.59/Tests/Quality/error_qual_vtab.fastq biopython-1.59/Tests/Quality/misc_rna_as_sanger.fastq biopython-1.59/Tests/Quality/misc_rna_as_illumina.fastq biopython-1.59/Tests/Quality/error_trunc_at_qual.fastq biopython-1.59/Tests/Quality/sanger_full_range_as_illumina.fastq biopython-1.59/Tests/Quality/error_qual_escape.fastq biopython-1.59/Tests/Quality/error_spaces.fastq biopython-1.59/Tests/Quality/longreads_as_solexa.fastq biopython-1.59/Tests/Quality/tricky.fastq biopython-1.59/Tests/Quality/error_qual_tab.fastq biopython-1.59/Tests/Quality/illumina_full_range_as_sanger.fastq biopython-1.59/Tests/Quality/error_tabs.fastq biopython-1.59/Tests/Quality/solexa_full_range_as_sanger.fastq biopython-1.59/Tests/Quality/example.fasta biopython-1.59/Tests/Quality/error_long_qual.fastq biopython-1.59/Tests/Quality/example.fastq biopython-1.59/Tests/Quality/error_short_qual.fastq biopython-1.59/Tests/Quality/error_double_qual.fastq biopython-1.59/Tests/Quality/error_trunc_in_plus.fastq biopython-1.59/Tests/Quality/wrapping_as_illumina.fastq biopython-1.59/Tests/Quality/error_qual_del.fastq biopython-1.59/Tests/Quality/sanger_full_range_original_sanger.fastq biopython-1.59/Tests/Quality/error_qual_unit_sep.fastq biopython-1.59/Tests/Quality/illumina_full_range_original_illumina.fastq biopython-1.59/Tests/Quality/longreads_original_sanger.fastq biopython-1.59/Tests/Quality/wrapping_original_sanger.fastq biopython-1.59/Tests/CodonUsage/ biopython-1.59/Tests/CodonUsage/HighlyExpressedGenes.txt biopython-1.59/Tests/NeuralNetwork/ biopython-1.59/Tests/NeuralNetwork/enolase.fasta biopython-1.59/Tests/NeuralNetwork/repeat.fasta biopython-1.59/Tests/test_prosite1.py biopython-1.59/Tests/run_tests.py biopython-1.59/Tests/test_ClustalOmega_tool.py biopython-1.59/Tests/Nexus/ biopython-1.59/Tests/Nexus/test_Nexus_input.nex biopython-1.59/Tests/Nexus/int_node_labels.nwk biopython-1.59/Tests/test_GraphicsChromosome.py biopython-1.59/Tests/test_Enzyme.py biopython-1.59/Tests/test_SubsMat.py biopython-1.59/Tests/test_Muscle_tool.py biopython-1.59/Tests/test_SeqIO_write.py biopython-1.59/Tests/test_NCBIXML.py biopython-1.59/Tests/test_KDTree.py biopython-1.59/Tests/test_SCOP_Raf.py biopython-1.59/Tests/PDB/ biopython-1.59/Tests/PDB/ions.pdb biopython-1.59/Tests/PDB/2BEG.pdb biopython-1.59/Tests/PDB/1MOT.pdb biopython-1.59/Tests/PDB/1A8O.pdb biopython-1.59/Tests/PDB/a_structure.pdb biopython-1.59/Tests/test_PAML_baseml.py biopython-1.59/Tests/test_pairwise2.py biopython-1.59/Tests/test_Phylo.py biopython-1.59/Tests/Fasta/ biopython-1.59/Tests/Fasta/aster.pro biopython-1.59/Tests/Fasta/dups.fasta biopython-1.59/Tests/Fasta/output005.m10 biopython-1.59/Tests/Fasta/rose.pro biopython-1.59/Tests/Fasta/fa01 biopython-1.59/Tests/Fasta/README biopython-1.59/Tests/Fasta/output002.m10 biopython-1.59/Tests/Fasta/output007.m10 biopython-1.59/Tests/Fasta/f003 biopython-1.59/Tests/Fasta/output008.m10 biopython-1.59/Tests/Fasta/sweetpea.nu biopython-1.59/Tests/Fasta/output006.m10 biopython-1.59/Tests/Fasta/lupine.nu biopython-1.59/Tests/Fasta/output003.m10 biopython-1.59/Tests/Fasta/loveliesbleeding.pro biopython-1.59/Tests/Fasta/output001.m10 biopython-1.59/Tests/Fasta/lavender.nu biopython-1.59/Tests/Fasta/rosemary.pro biopython-1.59/Tests/Fasta/centaurea.nu biopython-1.59/Tests/Fasta/f002 biopython-1.59/Tests/Fasta/f001 biopython-1.59/Tests/Fasta/phlox.nu biopython-1.59/Tests/Fasta/output004.m10 biopython-1.59/Tests/Fasta/elderberry.nu biopython-1.59/Tests/Fasta/wisteria.nu biopython-1.59/Tests/test_Crystal.py biopython-1.59/Tests/Prosite/ biopython-1.59/Tests/Prosite/ps00165.txt biopython-1.59/Tests/Prosite/ps00488.txt biopython-1.59/Tests/Prosite/ps00432.txt biopython-1.59/Tests/Prosite/ps00159.txt biopython-1.59/Tests/Prosite/Doc/ biopython-1.59/Tests/Prosite/Doc/pdoc00113.txt biopython-1.59/Tests/Prosite/Doc/pdoc00100.txt biopython-1.59/Tests/Prosite/Doc/pdoc00472.txt 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biopython-1.59/Tests/IntelliGenetics/ biopython-1.59/Tests/IntelliGenetics/vpu_nucaligned.txt biopython-1.59/Tests/IntelliGenetics/VIF_mase-pro.txt biopython-1.59/Tests/IntelliGenetics/TAT_mase_nuc.txt biopython-1.59/Tests/test_Prank_tool.py biopython-1.59/Tests/test_Entrez.py biopython-1.59/Tests/test_geo.py biopython-1.59/Tests/test_SeqIO.py biopython-1.59/Tests/Saf/ biopython-1.59/Tests/Saf/saf1.txt biopython-1.59/Tests/test_SCOP_Dom.py biopython-1.59/Tests/test_GraphicsBitmaps.py biopython-1.59/Tests/test_translate.py biopython-1.59/Tests/test_PopGen_GenePop.py biopython-1.59/Tests/test_SeqRecord.py biopython-1.59/Tests/test_Emboss.py biopython-1.59/Tests/test_SeqIO_features.py biopython-1.59/Tests/test_NNExclusiveOr.py biopython-1.59/Tests/setup_BioSQL.py biopython-1.59/Tests/test_SCOP_online.py biopython-1.59/Tests/SwissProt/ biopython-1.59/Tests/SwissProt/multi_ex.list biopython-1.59/Tests/SwissProt/multi_ex.txt biopython-1.59/Tests/SwissProt/multi_ex.fasta 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biopython-1.59/Tests/SwissProt/uni001 biopython-1.59/Tests/requires_internet.py biopython-1.59/Tests/BioSQL/ biopython-1.59/Tests/BioSQL/temp_sqlite.db biopython-1.59/Tests/BioSQL/biosqldb-mysql.sql biopython-1.59/Tests/BioSQL/biosqldb-pg.sql biopython-1.59/Tests/BioSQL/biosqldb-sqlite.sql biopython-1.59/Tests/test_AlignIO.py biopython-1.59/Tests/Compass/ biopython-1.59/Tests/Compass/comtest2 biopython-1.59/Tests/Compass/comtest1 biopython-1.59/Tests/test_PAML_yn00.py biopython-1.59/Tests/test_Phd.py biopython-1.59/Tests/KEGG/ biopython-1.59/Tests/KEGG/compound.irregular biopython-1.59/Tests/KEGG/enzyme.irregular biopython-1.59/Tests/KEGG/map00950.rea biopython-1.59/Tests/KEGG/compound.sample biopython-1.59/Tests/KEGG/enzyme.sample biopython-1.59/Tests/Ace/ biopython-1.59/Tests/Ace/seq.cap.ace biopython-1.59/Tests/Ace/contig1.ace biopython-1.59/Tests/Ace/consed_sample.ace biopython-1.59/Tests/test_ProtParam.py biopython-1.59/Tests/test_Tutorial.py biopython-1.59/Tests/Entrez/ biopython-1.59/Tests/Entrez/esummary3.xml biopython-1.59/Tests/Entrez/protein.xml biopython-1.59/Tests/Entrez/journals.xml biopython-1.59/Tests/Entrez/elink5.xml biopython-1.59/Tests/Entrez/elink4.xml biopython-1.59/Tests/Entrez/elink9.xml biopython-1.59/Tests/Entrez/nucleotide2.xml biopython-1.59/Tests/Entrez/elink6.xml biopython-1.59/Tests/Entrez/esummary1.xml biopython-1.59/Tests/Entrez/elink1.xml biopython-1.59/Tests/Entrez/esummary2.xml biopython-1.59/Tests/Entrez/espell.xml biopython-1.59/Tests/Entrez/elink3.xml biopython-1.59/Tests/Entrez/esummary7.xml biopython-1.59/Tests/Entrez/esearch8.xml biopython-1.59/Tests/Entrez/einfo3.xml biopython-1.59/Tests/Entrez/esummary5.xml biopython-1.59/Tests/Entrez/esearch7.xml biopython-1.59/Tests/Entrez/taxonomy.xml biopython-1.59/Tests/Entrez/einfo4.xml biopython-1.59/Tests/Entrez/egquery1.xml biopython-1.59/Tests/Entrez/nucleotide1.xml biopython-1.59/Tests/Entrez/esummary4.xml biopython-1.59/Tests/Entrez/esearch2.xml 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biopython-1.59/Bio/SeqUtils/CheckSum.py biopython-1.59/Bio/SeqUtils/ProtParamData.py biopython-1.59/Bio/SeqUtils/MeltingTemp.py biopython-1.59/Bio/SeqUtils/IsoelectricPoint.py biopython-1.59/Bio/SeqUtils/__init__.py biopython-1.59/Bio/SeqUtils/CodonUsage.py biopython-1.59/Bio/SeqUtils/lcc.py biopython-1.59/Bio/SeqUtils/ProtParam.py biopython-1.59/Bio/SeqUtils/CodonUsageIndices.py biopython-1.59/Bio/Restriction/ biopython-1.59/Bio/Restriction/Restriction_Dictionary.py biopython-1.59/Bio/Restriction/Restriction.py biopython-1.59/Bio/Restriction/__init__.py biopython-1.59/Bio/Restriction/RanaConfig.py biopython-1.59/Bio/Restriction/PrintFormat.py biopython-1.59/Bio/Restriction/_Update/ biopython-1.59/Bio/Restriction/_Update/__init__.py biopython-1.59/Bio/Restriction/_Update/RestrictionCompiler.py biopython-1.59/Bio/Restriction/_Update/Update.py biopython-1.59/Bio/Index.py biopython-1.59/Bio/CAPS/ biopython-1.59/Bio/CAPS/__init__.py biopython-1.59/Bio/HMM/ biopython-1.59/Bio/HMM/MarkovModel.py biopython-1.59/Bio/HMM/Utilities.py biopython-1.59/Bio/HMM/__init__.py biopython-1.59/Bio/HMM/DynamicProgramming.py biopython-1.59/Bio/HMM/Trainer.py biopython-1.59/Bio/SubsMat/ biopython-1.59/Bio/SubsMat/FreqTable.py biopython-1.59/Bio/SubsMat/__init__.py biopython-1.59/Bio/SubsMat/MatrixInfo.py biopython-1.59/Bio/Cluster/ biopython-1.59/Bio/Cluster/clustermodule.c biopython-1.59/Bio/Cluster/__init__.py biopython-1.59/Bio/Cluster/cluster.c biopython-1.59/Bio/Cluster/cluster.h biopython-1.59/Bio/Medline/ biopython-1.59/Bio/Medline/__init__.py biopython-1.59/Bio/GenBank/ biopython-1.59/Bio/GenBank/utils.py biopython-1.59/Bio/GenBank/__init__.py biopython-1.59/Bio/GenBank/Scanner.py biopython-1.59/Bio/GenBank/Record.py biopython-1.59/Bio/SeqRecord.py biopython-1.59/Bio/trie.c biopython-1.59/Bio/cpairwise2module.c biopython-1.59/Bio/Statistics/ biopython-1.59/Bio/Statistics/__init__.py biopython-1.59/Bio/Statistics/lowess.py biopython-1.59/Bio/UniGene/ biopython-1.59/Bio/UniGene/UniGene.py biopython-1.59/Bio/UniGene/__init__.py biopython-1.59/Bio/NaiveBayes.py biopython-1.59/Bio/Alphabet/ biopython-1.59/Bio/Alphabet/__init__.py biopython-1.59/Bio/Alphabet/IUPAC.py biopython-1.59/Bio/Alphabet/Reduced.py biopython-1.59/Bio/triefind.py biopython-1.59/Bio/Affy/ biopython-1.59/Bio/Affy/__init__.py biopython-1.59/Bio/Affy/CelFile.py biopython-1.59/Bio/LogisticRegression.py biopython-1.59/Bio/kNN.py biopython-1.59/Bio/TogoWS/ biopython-1.59/Bio/TogoWS/__init__.py biopython-1.59/Bio/SCOP/ biopython-1.59/Bio/SCOP/Des.py biopython-1.59/Bio/SCOP/Dom.py biopython-1.59/Bio/SCOP/__init__.py biopython-1.59/Bio/SCOP/Cla.py biopython-1.59/Bio/SCOP/Hie.py biopython-1.59/Bio/SCOP/Raf.py biopython-1.59/Bio/SCOP/Residues.py biopython-1.59/Bio/Crystal/ biopython-1.59/Bio/Crystal/__init__.py biopython-1.59/Bio/Align/ biopython-1.59/Bio/Align/AlignInfo.py biopython-1.59/Bio/Align/Applications/ biopython-1.59/Bio/Align/Applications/_Muscle.py biopython-1.59/Bio/Align/Applications/_TCoffee.py biopython-1.59/Bio/Align/Applications/_Prank.py biopython-1.59/Bio/Align/Applications/_Dialign.py biopython-1.59/Bio/Align/Applications/__init__.py biopython-1.59/Bio/Align/Applications/_Clustalw.py biopython-1.59/Bio/Align/Applications/_Probcons.py biopython-1.59/Bio/Align/Applications/_Mafft.py biopython-1.59/Bio/Align/Applications/_ClustalOmega.py biopython-1.59/Bio/Align/__init__.py biopython-1.59/Bio/Align/Generic.py biopython-1.59/Bio/Application/ biopython-1.59/Bio/Application/__init__.py biopython-1.59/Bio/Blast/ biopython-1.59/Bio/Blast/NCBIStandalone.py biopython-1.59/Bio/Blast/__init__.py biopython-1.59/Bio/Blast/NCBIWWW.py biopython-1.59/Bio/Blast/NCBIXML.py biopython-1.59/Bio/Blast/Applications.py biopython-1.59/Bio/Blast/ParseBlastTable.py biopython-1.59/Bio/Blast/Record.py biopython-1.59/Bio/Geo/ biopython-1.59/Bio/Geo/__init__.py biopython-1.59/Bio/Geo/Record.py biopython-1.59/CONTRIB biopython-1.59/Scripts/ biopython-1.59/Scripts/SeqGui/ biopython-1.59/Scripts/SeqGui/SeqGui.py biopython-1.59/Scripts/Structure/ biopython-1.59/Scripts/Structure/hsexpo biopython-1.59/Scripts/Performance/ biopython-1.59/Scripts/Performance/biosql_performance_read.py biopython-1.59/Scripts/Performance/biosql_performance_load.py biopython-1.59/Scripts/debug/ biopython-1.59/Scripts/debug/debug_blast_parser.py biopython-1.59/Scripts/Restriction/ biopython-1.59/Scripts/Restriction/rebase_update.py biopython-1.59/Scripts/Restriction/ranacompiler.py biopython-1.59/Scripts/xbbtools/ biopython-1.59/Scripts/xbbtools/xbb_help.py biopython-1.59/Scripts/xbbtools/test.fas biopython-1.59/Scripts/xbbtools/README biopython-1.59/Scripts/xbbtools/xbb_blast.py biopython-1.59/Scripts/xbbtools/xbb_sequence.py biopython-1.59/Scripts/xbbtools/xbb_blastbg.py biopython-1.59/Scripts/xbbtools/xbb_search.py biopython-1.59/Scripts/xbbtools/nextorf.py biopython-1.59/Scripts/xbbtools/xbbtools.py biopython-1.59/Scripts/xbbtools/xbb_widget.py biopython-1.59/Scripts/xbbtools/xbb_utils.py biopython-1.59/Scripts/xbbtools/testrp.fas biopython-1.59/Scripts/xbbtools/xbb_translations.py biopython-1.59/Scripts/GenBank/ biopython-1.59/Scripts/GenBank/find_parser_problems.py biopython-1.59/Scripts/GenBank/check_output_simple.py biopython-1.59/Scripts/GenBank/check_output.py biopython-1.59/Scripts/scop_pdb.py biopython-1.59/Scripts/query_pubmed.py sudo -u fink-bld [ENV] sh -c /tmp/fink.BeO88 [ -r /sw/fink/dists/stable/main/finkinfo/libs/pythonmods/biopython-py.patch ] sudo -u fink-bld [ENV] sh -c /tmp/fink.yPKKB patch -p1 < /sw/fink/dists/stable/main/finkinfo/libs/pythonmods/biopython-py.patch patching file setup.py sudo -u fink-bld [ENV] sh -c /tmp/fink.7GgSZ /sw/bin/python2.7 setup.py build running build running build_py creating build creating build/lib.macosx-10.9-x86_64-2.7 creating build/lib.macosx-10.9-x86_64-2.7/Bio copying Bio/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio copying Bio/_py3k.py -> build/lib.macosx-10.9-x86_64-2.7/Bio copying Bio/DocSQL.py -> build/lib.macosx-10.9-x86_64-2.7/Bio copying Bio/File.py -> build/lib.macosx-10.9-x86_64-2.7/Bio copying Bio/HotRand.py -> build/lib.macosx-10.9-x86_64-2.7/Bio copying Bio/Index.py -> build/lib.macosx-10.9-x86_64-2.7/Bio copying Bio/kNN.py -> build/lib.macosx-10.9-x86_64-2.7/Bio copying Bio/LogisticRegression.py -> build/lib.macosx-10.9-x86_64-2.7/Bio copying Bio/MarkovModel.py -> build/lib.macosx-10.9-x86_64-2.7/Bio copying Bio/MaxEntropy.py -> build/lib.macosx-10.9-x86_64-2.7/Bio copying Bio/NaiveBayes.py -> build/lib.macosx-10.9-x86_64-2.7/Bio copying Bio/pairwise2.py -> build/lib.macosx-10.9-x86_64-2.7/Bio copying Bio/ParserSupport.py -> build/lib.macosx-10.9-x86_64-2.7/Bio copying Bio/Search.py -> build/lib.macosx-10.9-x86_64-2.7/Bio copying Bio/Seq.py -> build/lib.macosx-10.9-x86_64-2.7/Bio copying Bio/SeqFeature.py -> build/lib.macosx-10.9-x86_64-2.7/Bio copying Bio/SeqRecord.py -> build/lib.macosx-10.9-x86_64-2.7/Bio copying Bio/triefind.py -> build/lib.macosx-10.9-x86_64-2.7/Bio creating build/lib.macosx-10.9-x86_64-2.7/Bio/Align copying Bio/Align/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Align copying Bio/Align/AlignInfo.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Align copying Bio/Align/Generic.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Align creating build/lib.macosx-10.9-x86_64-2.7/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Align/Applications creating build/lib.macosx-10.9-x86_64-2.7/Bio/AlignIO copying Bio/AlignIO/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/AlignIO creating build/lib.macosx-10.9-x86_64-2.7/Bio/Alphabet copying Bio/Alphabet/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Alphabet copying Bio/Alphabet/IUPAC.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Alphabet copying Bio/Alphabet/Reduced.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Alphabet creating build/lib.macosx-10.9-x86_64-2.7/Bio/Application copying Bio/Application/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Application creating build/lib.macosx-10.9-x86_64-2.7/Bio/Blast copying Bio/Blast/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Blast copying Bio/Blast/Applications.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Blast copying Bio/Blast/NCBIStandalone.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Blast copying Bio/Blast/NCBIWWW.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Blast copying Bio/Blast/NCBIXML.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Blast copying Bio/Blast/Record.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Blast creating build/lib.macosx-10.9-x86_64-2.7/Bio/CAPS copying Bio/CAPS/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/CAPS creating build/lib.macosx-10.9-x86_64-2.7/Bio/Compass copying Bio/Compass/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Compass creating build/lib.macosx-10.9-x86_64-2.7/Bio/Crystal copying Bio/Crystal/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Crystal creating build/lib.macosx-10.9-x86_64-2.7/Bio/Data copying Bio/Data/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Data copying Bio/Data/CodonTable.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Data copying Bio/Data/IUPACData.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Data creating build/lib.macosx-10.9-x86_64-2.7/Bio/Emboss copying Bio/Emboss/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Emboss copying Bio/Emboss/Applications.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Emboss copying Bio/Emboss/Primer3.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Emboss creating build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez copying Bio/Entrez/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez copying Bio/Entrez/Parser.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez creating build/lib.macosx-10.9-x86_64-2.7/Bio/ExPASy copying Bio/ExPASy/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/ExPASy creating build/lib.macosx-10.9-x86_64-2.7/Bio/FSSP copying Bio/FSSP/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/FSSP copying Bio/FSSP/fssp_rec.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/FSSP copying Bio/FSSP/FSSPTools.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/FSSP creating build/lib.macosx-10.9-x86_64-2.7/Bio/GA copying Bio/GA/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/GA copying Bio/GA/Evolver.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/GA copying Bio/GA/Organism.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/GA creating build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Crossover copying Bio/GA/Crossover/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Crossover copying Bio/GA/Crossover/General.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Crossover copying Bio/GA/Crossover/GeneralPoint.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Crossover copying Bio/GA/Crossover/Point.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Crossover copying Bio/GA/Crossover/TwoPoint.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Crossover copying Bio/GA/Crossover/Uniform.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Crossover creating build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Mutation copying Bio/GA/Mutation/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Mutation copying Bio/GA/Mutation/General.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Mutation copying Bio/GA/Mutation/Simple.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Mutation creating build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Repair copying Bio/GA/Repair/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Repair copying Bio/GA/Repair/Stabilizing.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Repair creating build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Selection copying Bio/GA/Selection/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Selection copying Bio/GA/Selection/Abstract.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Selection copying Bio/GA/Selection/Diversity.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Selection copying Bio/GA/Selection/RouletteWheel.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Selection copying Bio/GA/Selection/Tournament.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Selection creating build/lib.macosx-10.9-x86_64-2.7/Bio/GenBank copying Bio/GenBank/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/GenBank copying Bio/GenBank/Record.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/GenBank copying Bio/GenBank/Scanner.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/GenBank copying Bio/GenBank/utils.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/GenBank creating build/lib.macosx-10.9-x86_64-2.7/Bio/Geo copying Bio/Geo/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Geo copying Bio/Geo/Record.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Geo creating build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics copying Bio/Graphics/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics copying Bio/Graphics/Comparative.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics copying Bio/Graphics/Distribution.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics creating build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram creating build/lib.macosx-10.9-x86_64-2.7/Bio/HMM copying Bio/HMM/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/HMM copying Bio/HMM/MarkovModel.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/HMM copying Bio/HMM/Trainer.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/HMM copying Bio/HMM/Utilities.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/HMM creating build/lib.macosx-10.9-x86_64-2.7/Bio/KEGG copying Bio/KEGG/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/KEGG creating build/lib.macosx-10.9-x86_64-2.7/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/KEGG/Compound creating build/lib.macosx-10.9-x86_64-2.7/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/KEGG/Enzyme creating build/lib.macosx-10.9-x86_64-2.7/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/KEGG/Map creating build/lib.macosx-10.9-x86_64-2.7/Bio/Medline copying Bio/Medline/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Medline creating build/lib.macosx-10.9-x86_64-2.7/Bio/Motif copying Bio/Motif/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Motif copying Bio/Motif/_Motif.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Motif copying Bio/Motif/Thresholds.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Motif creating build/lib.macosx-10.9-x86_64-2.7/Bio/Motif/Parsers copying Bio/Motif/Parsers/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Motif/Parsers copying Bio/Motif/Parsers/AlignAce.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Motif/Parsers copying Bio/Motif/Parsers/MAST.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Motif/Parsers copying Bio/Motif/Parsers/MEME.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Motif/Parsers creating build/lib.macosx-10.9-x86_64-2.7/Bio/Motif/Applications copying Bio/Motif/Applications/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Motif/Applications copying Bio/Motif/Applications/_AlignAce.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Motif/Applications creating build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork copying Bio/NeuralNetwork/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork copying Bio/NeuralNetwork/StopTraining.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork copying Bio/NeuralNetwork/Training.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork creating build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/Layer.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork/BackPropagation copying Bio/NeuralNetwork/BackPropagation/Network.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork/BackPropagation creating build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Motif.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Pattern.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Schema.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork/Gene copying Bio/NeuralNetwork/Gene/Signature.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork/Gene creating build/lib.macosx-10.9-x86_64-2.7/Bio/Nexus copying Bio/Nexus/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Nexus copying Bio/Nexus/Nexus.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Nexus copying Bio/Nexus/Nodes.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Nexus copying Bio/Nexus/Trees.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Nexus creating build/lib.macosx-10.9-x86_64-2.7/Bio/NMR copying Bio/NMR/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/NMR copying Bio/NMR/NOEtools.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/NMR copying Bio/NMR/xpktools.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/NMR creating build/lib.macosx-10.9-x86_64-2.7/Bio/Pathway copying Bio/Pathway/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Pathway creating build/lib.macosx-10.9-x86_64-2.7/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Pathway/Rep copying Bio/Pathway/Rep/HashSet.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Pathway/Rep creating build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/Atom.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/Chain.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/Dice.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/DSSP.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/Entity.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/FragmentMapper.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/HSExposure.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/MMCIFParser.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/Model.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/NACCESS.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/NeighborSearch.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/PDBExceptions.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/PDBIO.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/PDBList.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/PDBParser.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/Polypeptide.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/PSEA.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/Residue.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/ResidueDepth.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/Selection.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/Structure.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/StructureAlignment.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/StructureBuilder.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/Superimposer.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB copying Bio/PDB/Vector.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB creating build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/mmCIF copying Bio/PDB/mmCIF/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/mmCIF creating build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen copying Bio/PopGen/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen creating build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/Async copying Bio/PopGen/Async/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/Async copying Bio/PopGen/Async/Local.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/Async creating build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/FDist copying Bio/PopGen/FDist/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/FDist copying Bio/PopGen/FDist/Async.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/FDist copying Bio/PopGen/FDist/Controller.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/FDist copying Bio/PopGen/FDist/Utils.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/FDist creating build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Utils.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/GenePop creating build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Async.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Cache.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Controller.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal copying Bio/PopGen/SimCoal/Template.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal creating build/lib.macosx-10.9-x86_64-2.7/Bio/Restriction copying Bio/Restriction/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Restriction copying Bio/Restriction/RanaConfig.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Restriction copying Bio/Restriction/Restriction.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Restriction creating build/lib.macosx-10.9-x86_64-2.7/Bio/Restriction/_Update copying Bio/Restriction/_Update/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Restriction/_Update copying Bio/Restriction/_Update/RestrictionCompiler.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Restriction/_Update copying Bio/Restriction/_Update/Update.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Restriction/_Update creating build/lib.macosx-10.9-x86_64-2.7/Bio/SCOP copying Bio/SCOP/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SCOP copying Bio/SCOP/Cla.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SCOP copying Bio/SCOP/Des.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SCOP copying Bio/SCOP/Dom.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SCOP copying Bio/SCOP/Hie.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SCOP copying Bio/SCOP/Raf.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SCOP copying Bio/SCOP/Residues.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SCOP creating build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO copying Bio/SeqIO/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO copying Bio/SeqIO/_convert.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO copying Bio/SeqIO/_index.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO creating build/lib.macosx-10.9-x86_64-2.7/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SeqUtils creating build/lib.macosx-10.9-x86_64-2.7/Bio/Sequencing copying Bio/Sequencing/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Sequencing copying Bio/Sequencing/Ace.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Sequencing copying Bio/Sequencing/Phd.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Sequencing creating build/lib.macosx-10.9-x86_64-2.7/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Sequencing/Applications creating build/lib.macosx-10.9-x86_64-2.7/Bio/Statistics copying Bio/Statistics/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Statistics copying Bio/Statistics/lowess.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Statistics creating build/lib.macosx-10.9-x86_64-2.7/Bio/SubsMat copying Bio/SubsMat/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SubsMat creating build/lib.macosx-10.9-x86_64-2.7/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/SVDSuperimposer.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SVDSuperimposer creating build/lib.macosx-10.9-x86_64-2.7/Bio/SwissProt copying Bio/SwissProt/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/SwissProt creating build/lib.macosx-10.9-x86_64-2.7/Bio/TogoWS copying Bio/TogoWS/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/TogoWS creating build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo copying Bio/Phylo/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo copying Bio/Phylo/_io.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo copying Bio/Phylo/_sugar.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo copying Bio/Phylo/_utils.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo copying Bio/Phylo/BaseTree.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo copying Bio/Phylo/Newick.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo copying Bio/Phylo/NewickIO.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo copying Bio/Phylo/NexusIO.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo creating build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/Applications creating build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/PAML creating build/lib.macosx-10.9-x86_64-2.7/Bio/UniGene copying Bio/UniGene/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/UniGene copying Bio/UniGene/UniGene.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/UniGene creating build/lib.macosx-10.9-x86_64-2.7/Bio/Wise copying Bio/Wise/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Wise copying Bio/Wise/dnal.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Wise copying Bio/Wise/psw.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Wise creating build/lib.macosx-10.9-x86_64-2.7/BioSQL copying BioSQL/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/BioSQL copying BioSQL/BioSeq.py -> build/lib.macosx-10.9-x86_64-2.7/BioSQL copying BioSQL/BioSeqDatabase.py -> build/lib.macosx-10.9-x86_64-2.7/BioSQL copying BioSQL/DBUtils.py -> build/lib.macosx-10.9-x86_64-2.7/BioSQL copying BioSQL/Loader.py -> build/lib.macosx-10.9-x86_64-2.7/BioSQL creating build/lib.macosx-10.9-x86_64-2.7/Bio/Affy copying Bio/Affy/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Affy copying Bio/Affy/CelFile.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Affy creating build/lib.macosx-10.9-x86_64-2.7/Bio/Cluster copying Bio/Cluster/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/Cluster creating build/lib.macosx-10.9-x86_64-2.7/Bio/KDTree copying Bio/KDTree/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/KDTree copying Bio/KDTree/KDTree.py -> build/lib.macosx-10.9-x86_64-2.7/Bio/KDTree creating build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_020511.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs creating build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/bottle.par -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/decline_lambda.par -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/decline_split.par -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/island.par -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/simple.par -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_island.par -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_ssm_1d.par -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/split_ssm_2d.par -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/ssm_1d.par -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/data copying Bio/PopGen/SimCoal/data/ssm_2d.par -> build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/data running build_ext building 'Bio.cpairwise2' extension creating build/temp.macosx-10.9-x86_64-2.7 creating build/temp.macosx-10.9-x86_64-2.7/Bio gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -IBio -I/sw/include/python2.7 -c Bio/cpairwise2module.c -o build/temp.macosx-10.9-x86_64-2.7/Bio/cpairwise2module.o gcc -L/sw/lib -bundle -L/sw/lib/python2.7/config -lpython2.7 -L/sw/lib -L/sw/lib -I/sw/include build/temp.macosx-10.9-x86_64-2.7/Bio/cpairwise2module.o -L/sw/lib -o build/lib.macosx-10.9-x86_64-2.7/Bio/cpairwise2.so building 'Bio.trie' extension gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -IBio -I/sw/include/python2.7 -c Bio/triemodule.c -o build/temp.macosx-10.9-x86_64-2.7/Bio/triemodule.o gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -IBio -I/sw/include/python2.7 -c Bio/trie.c -o build/temp.macosx-10.9-x86_64-2.7/Bio/trie.o gcc -L/sw/lib -bundle -L/sw/lib/python2.7/config -lpython2.7 -L/sw/lib -L/sw/lib -I/sw/include build/temp.macosx-10.9-x86_64-2.7/Bio/triemodule.o build/temp.macosx-10.9-x86_64-2.7/Bio/trie.o -L/sw/lib -o build/lib.macosx-10.9-x86_64-2.7/Bio/trie.so building 'Bio.PDB.mmCIF.MMCIFlex' extension creating build/temp.macosx-10.9-x86_64-2.7/Bio/PDB creating build/temp.macosx-10.9-x86_64-2.7/Bio/PDB/mmCIF gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -IBio -I/sw/include/python2.7 -c Bio/PDB/mmCIF/lex.yy.c -o build/temp.macosx-10.9-x86_64-2.7/Bio/PDB/mmCIF/lex.yy.o lex.yy.c:1040:13: warning: unused function 'yyunput' [-Wunused-function] static void yyunput( int c, register char *yy_bp ) ^ lex.yy.c:1086:12: warning: function 'input' is not needed and will not be emitted [-Wunneeded-internal-declaration] static int input() ^ 2 warnings generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -IBio -I/sw/include/python2.7 -c Bio/PDB/mmCIF/MMCIFlexmodule.c -o build/temp.macosx-10.9-x86_64-2.7/Bio/PDB/mmCIF/MMCIFlexmodule.o Bio/PDB/mmCIF/MMCIFlexmodule.c:16:2: warning: implicit declaration of function 'mmcif_set_file' is invalid in C99 [-Wimplicit-function-declaration] mmcif_set_file(fp); ^ Bio/PDB/mmCIF/MMCIFlexmodule.c:44:7: warning: implicit declaration of function 'mmcif_get_token' is invalid in C99 [-Wimplicit-function-declaration] flag=mmcif_get_token(); ^ 2 warnings generated. gcc -L/sw/lib -bundle -L/sw/lib/python2.7/config -lpython2.7 -L/sw/lib -L/sw/lib -I/sw/include build/temp.macosx-10.9-x86_64-2.7/Bio/PDB/mmCIF/lex.yy.o build/temp.macosx-10.9-x86_64-2.7/Bio/PDB/mmCIF/MMCIFlexmodule.o -L/sw/lib -lfl -o build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/mmCIF/MMCIFlex.so building 'Bio.Nexus.cnexus' extension creating build/temp.macosx-10.9-x86_64-2.7/Bio/Nexus gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -I/sw/include/python2.7 -c Bio/Nexus/cnexus.c -o build/temp.macosx-10.9-x86_64-2.7/Bio/Nexus/cnexus.o gcc -L/sw/lib -bundle -L/sw/lib/python2.7/config -lpython2.7 -L/sw/lib -L/sw/lib -I/sw/include build/temp.macosx-10.9-x86_64-2.7/Bio/Nexus/cnexus.o -L/sw/lib -o build/lib.macosx-10.9-x86_64-2.7/Bio/Nexus/cnexus.so building 'Bio.Cluster.cluster' extension creating build/temp.macosx-10.9-x86_64-2.7/Bio/Cluster gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include/python2.7 -c Bio/Cluster/clustermodule.c -o build/temp.macosx-10.9-x86_64-2.7/Bio/Cluster/clustermodule.o In file included from Bio/Cluster/clustermodule.c:2: In file included from /sw/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /sw/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: In file included from /sw/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1761: /sw/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by " \ ^ 1 warning generated. gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include/python2.7 -c Bio/Cluster/cluster.c -o build/temp.macosx-10.9-x86_64-2.7/Bio/Cluster/cluster.o gcc -L/sw/lib -bundle -L/sw/lib/python2.7/config -lpython2.7 -L/sw/lib -L/sw/lib -I/sw/include build/temp.macosx-10.9-x86_64-2.7/Bio/Cluster/clustermodule.o build/temp.macosx-10.9-x86_64-2.7/Bio/Cluster/cluster.o -L/sw/lib -o build/lib.macosx-10.9-x86_64-2.7/Bio/Cluster/cluster.so building 'Bio.KDTree._CKDTree' extension creating build/temp.macosx-10.9-x86_64-2.7/Bio/KDTree gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include/python2.7 -c Bio/KDTree/KDTree.c -o build/temp.macosx-10.9-x86_64-2.7/Bio/KDTree/KDTree.o gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include/python2.7 -c Bio/KDTree/KDTreemodule.c -o build/temp.macosx-10.9-x86_64-2.7/Bio/KDTree/KDTreemodule.o In file included from Bio/KDTree/KDTreemodule.c:2: In file included from /sw/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /sw/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: In file included from /sw/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1761: /sw/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by " \ ^ 1 warning generated. gcc -L/sw/lib -bundle -L/sw/lib/python2.7/config -lpython2.7 -L/sw/lib -L/sw/lib -I/sw/include build/temp.macosx-10.9-x86_64-2.7/Bio/KDTree/KDTree.o build/temp.macosx-10.9-x86_64-2.7/Bio/KDTree/KDTreemodule.o -L/sw/lib -o build/lib.macosx-10.9-x86_64-2.7/Bio/KDTree/_CKDTree.so building 'Bio.Motif._pwm' extension creating build/temp.macosx-10.9-x86_64-2.7/Bio/Motif gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -fwrapv -O3 -Wall -Wstrict-prototypes -I/sw/include -I/sw/lib/python2.7/site-packages/numpy/core/include -I/sw/include/python2.7 -c Bio/Motif/_pwm.c -o build/temp.macosx-10.9-x86_64-2.7/Bio/Motif/_pwm.o In file included from Bio/Motif/_pwm.c:2: In file included from /sw/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /sw/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: In file included from /sw/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1761: /sw/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by " \ ^ 1 warning generated. gcc -L/sw/lib -bundle -L/sw/lib/python2.7/config -lpython2.7 -L/sw/lib -L/sw/lib -I/sw/include build/temp.macosx-10.9-x86_64-2.7/Bio/Motif/_pwm.o -L/sw/lib -o build/lib.macosx-10.9-x86_64-2.7/Bio/Motif/_pwm.so /bin/rm -rf /sw/build.build/root-biopython-py27-1.59-1 /bin/mkdir -p /sw/build.build/root-biopython-py27-1.59-1/sw /bin/mkdir -p /sw/build.build/root-biopython-py27-1.59-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-biopython-py27-1.59-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.3YiML /sw/bin/python2.7 setup.py install --root=/sw/build.build/root-biopython-py27-1.59-1 running install running build running build_py running build_ext running install_lib creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7 creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio copying build/lib.macosx-10.9-x86_64-2.7/Bio/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio copying build/lib.macosx-10.9-x86_64-2.7/Bio/_py3k.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Affy copying build/lib.macosx-10.9-x86_64-2.7/Bio/Affy/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Affy copying build/lib.macosx-10.9-x86_64-2.7/Bio/Affy/CelFile.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Affy creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align copying build/lib.macosx-10.9-x86_64-2.7/Bio/Align/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align copying build/lib.macosx-10.9-x86_64-2.7/Bio/Align/AlignInfo.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align/Applications copying build/lib.macosx-10.9-x86_64-2.7/Bio/Align/Applications/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align/Applications copying build/lib.macosx-10.9-x86_64-2.7/Bio/Align/Applications/_ClustalOmega.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align/Applications copying build/lib.macosx-10.9-x86_64-2.7/Bio/Align/Applications/_Clustalw.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align/Applications copying build/lib.macosx-10.9-x86_64-2.7/Bio/Align/Applications/_Dialign.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align/Applications copying build/lib.macosx-10.9-x86_64-2.7/Bio/Align/Applications/_Mafft.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align/Applications copying build/lib.macosx-10.9-x86_64-2.7/Bio/Align/Applications/_Muscle.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align/Applications copying build/lib.macosx-10.9-x86_64-2.7/Bio/Align/Applications/_Prank.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align/Applications copying build/lib.macosx-10.9-x86_64-2.7/Bio/Align/Applications/_Probcons.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align/Applications copying build/lib.macosx-10.9-x86_64-2.7/Bio/Align/Applications/_TCoffee.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align/Applications copying build/lib.macosx-10.9-x86_64-2.7/Bio/Align/Generic.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/AlignIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/AlignIO/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/AlignIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/AlignIO/ClustalIO.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/AlignIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/AlignIO/EmbossIO.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/AlignIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/AlignIO/FastaIO.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/AlignIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/AlignIO/Interfaces.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/AlignIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/AlignIO/NexusIO.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/AlignIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/AlignIO/PhylipIO.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/AlignIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/AlignIO/StockholmIO.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/AlignIO creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Alphabet copying build/lib.macosx-10.9-x86_64-2.7/Bio/Alphabet/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Alphabet copying build/lib.macosx-10.9-x86_64-2.7/Bio/Alphabet/IUPAC.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Alphabet copying build/lib.macosx-10.9-x86_64-2.7/Bio/Alphabet/Reduced.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Alphabet creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Application copying build/lib.macosx-10.9-x86_64-2.7/Bio/Application/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Application creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Blast copying build/lib.macosx-10.9-x86_64-2.7/Bio/Blast/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Blast copying build/lib.macosx-10.9-x86_64-2.7/Bio/Blast/Applications.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Blast copying build/lib.macosx-10.9-x86_64-2.7/Bio/Blast/NCBIStandalone.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Blast copying build/lib.macosx-10.9-x86_64-2.7/Bio/Blast/NCBIWWW.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Blast copying build/lib.macosx-10.9-x86_64-2.7/Bio/Blast/NCBIXML.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Blast copying build/lib.macosx-10.9-x86_64-2.7/Bio/Blast/ParseBlastTable.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Blast copying build/lib.macosx-10.9-x86_64-2.7/Bio/Blast/Record.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Blast creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/CAPS copying build/lib.macosx-10.9-x86_64-2.7/Bio/CAPS/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/CAPS creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Cluster copying build/lib.macosx-10.9-x86_64-2.7/Bio/Cluster/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Cluster copying build/lib.macosx-10.9-x86_64-2.7/Bio/Cluster/cluster.so -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Cluster creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Compass copying build/lib.macosx-10.9-x86_64-2.7/Bio/Compass/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Compass copying build/lib.macosx-10.9-x86_64-2.7/Bio/cpairwise2.so -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Crystal copying build/lib.macosx-10.9-x86_64-2.7/Bio/Crystal/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Crystal creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Data copying build/lib.macosx-10.9-x86_64-2.7/Bio/Data/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Data copying build/lib.macosx-10.9-x86_64-2.7/Bio/Data/CodonTable.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Data copying build/lib.macosx-10.9-x86_64-2.7/Bio/Data/IUPACData.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Data copying build/lib.macosx-10.9-x86_64-2.7/Bio/DocSQL.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Emboss copying build/lib.macosx-10.9-x86_64-2.7/Bio/Emboss/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Emboss copying build/lib.macosx-10.9-x86_64-2.7/Bio/Emboss/Applications.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Emboss copying build/lib.macosx-10.9-x86_64-2.7/Bio/Emboss/Primer3.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Emboss copying build/lib.macosx-10.9-x86_64-2.7/Bio/Emboss/PrimerSearch.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Emboss creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/archivearticle.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/archivecustom-classes.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/archivecustom-models.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/archivecustom-modules.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/articlemeta.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/backmatter.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/bookdoc_100301.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/bookdoc_110101.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/bookdoc_120101.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/chars.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/common.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/default-classes.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/default-mixes.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/display.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/egquery.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/eInfo_020511.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/elink_020122.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/eLink_020511.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/eLink_090910.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/eLink_101123.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/ePost_020511.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/eSearch_020511.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/eSpell.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/eSummary_041029.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/format.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/HomoloGene.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/htmltable.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/isoamsa.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/isoamsb.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/isoamsc.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/isoamsn.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/isoamso.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/isoamsr.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/isobox.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/isocyr1.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/isocyr2.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/isodia.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/isogrk1.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/isogrk2.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/isogrk3.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/isogrk4.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/isolat1.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/isolat2.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/isomfrk.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/isomopf.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/isomscr.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/isonum.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/isopub.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/isotech.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/journalmeta.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/link.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/list.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/math.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/mathml2-qname-1.mod -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/mathml2.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/mathmlsetup.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/mmlalias.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/mmlextra.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/modules.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/nlmserials_100101.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/notat.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/para.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/phrase.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/pmc-1.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/pubmed_020114.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/pubmed_080101.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/pubmed_090101.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/pubmed_100101.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/pubmed_100301.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/pubmed_110101.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/pubmed_120101.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/references.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/section.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/SP_General.mod.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/taxon.dtd -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/DTDs/xmlspecchars.ent -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/DTDs copying build/lib.macosx-10.9-x86_64-2.7/Bio/Entrez/Parser.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/ExPASy copying build/lib.macosx-10.9-x86_64-2.7/Bio/ExPASy/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/ExPASy copying build/lib.macosx-10.9-x86_64-2.7/Bio/ExPASy/Enzyme.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/ExPASy copying build/lib.macosx-10.9-x86_64-2.7/Bio/ExPASy/Prodoc.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/ExPASy copying build/lib.macosx-10.9-x86_64-2.7/Bio/ExPASy/Prosite.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/ExPASy copying build/lib.macosx-10.9-x86_64-2.7/Bio/ExPASy/ScanProsite.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/ExPASy copying build/lib.macosx-10.9-x86_64-2.7/Bio/File.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/FSSP copying build/lib.macosx-10.9-x86_64-2.7/Bio/FSSP/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/FSSP copying build/lib.macosx-10.9-x86_64-2.7/Bio/FSSP/fssp_rec.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/FSSP copying build/lib.macosx-10.9-x86_64-2.7/Bio/FSSP/FSSPTools.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/FSSP creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA copying build/lib.macosx-10.9-x86_64-2.7/Bio/GA/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA/Crossover copying build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Crossover/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA/Crossover copying build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Crossover/General.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA/Crossover copying build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Crossover/GeneralPoint.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA/Crossover copying build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Crossover/Point.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA/Crossover copying build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Crossover/TwoPoint.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA/Crossover copying build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Crossover/Uniform.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA/Crossover copying build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Evolver.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA/Mutation copying build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Mutation/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA/Mutation copying build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Mutation/General.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA/Mutation copying build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Mutation/Simple.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA/Mutation copying build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Organism.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA/Repair copying build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Repair/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA/Repair copying build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Repair/Stabilizing.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA/Repair creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA/Selection copying build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Selection/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA/Selection copying build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Selection/Abstract.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA/Selection copying build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Selection/Diversity.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA/Selection copying build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Selection/RouletteWheel.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA/Selection copying build/lib.macosx-10.9-x86_64-2.7/Bio/GA/Selection/Tournament.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA/Selection creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GenBank copying build/lib.macosx-10.9-x86_64-2.7/Bio/GenBank/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GenBank copying build/lib.macosx-10.9-x86_64-2.7/Bio/GenBank/Record.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GenBank copying build/lib.macosx-10.9-x86_64-2.7/Bio/GenBank/Scanner.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GenBank copying build/lib.macosx-10.9-x86_64-2.7/Bio/GenBank/utils.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GenBank creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Geo copying build/lib.macosx-10.9-x86_64-2.7/Bio/Geo/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Geo copying build/lib.macosx-10.9-x86_64-2.7/Bio/Geo/Record.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Geo creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics copying build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics copying build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/BasicChromosome.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics copying build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/Comparative.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics copying build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/DisplayRepresentation.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics copying build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/Distribution.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram/_Colors.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram/_CrossLink.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram/_Diagram.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram/_Feature.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram/_Graph.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.macosx-10.9-x86_64-2.7/Bio/Graphics/GenomeDiagram/_Track.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/HMM copying build/lib.macosx-10.9-x86_64-2.7/Bio/HMM/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/HMM copying build/lib.macosx-10.9-x86_64-2.7/Bio/HMM/DynamicProgramming.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/HMM copying build/lib.macosx-10.9-x86_64-2.7/Bio/HMM/MarkovModel.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/HMM copying build/lib.macosx-10.9-x86_64-2.7/Bio/HMM/Trainer.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/HMM copying build/lib.macosx-10.9-x86_64-2.7/Bio/HMM/Utilities.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/HMM copying build/lib.macosx-10.9-x86_64-2.7/Bio/HotRand.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio copying build/lib.macosx-10.9-x86_64-2.7/Bio/Index.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/KDTree copying build/lib.macosx-10.9-x86_64-2.7/Bio/KDTree/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/KDTree copying build/lib.macosx-10.9-x86_64-2.7/Bio/KDTree/_CKDTree.so -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/KDTree copying build/lib.macosx-10.9-x86_64-2.7/Bio/KDTree/KDTree.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/KDTree creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/KEGG copying build/lib.macosx-10.9-x86_64-2.7/Bio/KEGG/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/KEGG creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/KEGG/Compound copying build/lib.macosx-10.9-x86_64-2.7/Bio/KEGG/Compound/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/KEGG/Compound creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/KEGG/Enzyme copying build/lib.macosx-10.9-x86_64-2.7/Bio/KEGG/Enzyme/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/KEGG/Enzyme creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/KEGG/Map copying build/lib.macosx-10.9-x86_64-2.7/Bio/KEGG/Map/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/KEGG/Map copying build/lib.macosx-10.9-x86_64-2.7/Bio/kNN.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio copying build/lib.macosx-10.9-x86_64-2.7/Bio/LogisticRegression.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio copying build/lib.macosx-10.9-x86_64-2.7/Bio/MarkovModel.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio copying build/lib.macosx-10.9-x86_64-2.7/Bio/MaxEntropy.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Medline copying build/lib.macosx-10.9-x86_64-2.7/Bio/Medline/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Medline creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Motif copying build/lib.macosx-10.9-x86_64-2.7/Bio/Motif/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Motif copying build/lib.macosx-10.9-x86_64-2.7/Bio/Motif/_Motif.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Motif copying build/lib.macosx-10.9-x86_64-2.7/Bio/Motif/_pwm.so -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Motif creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Motif/Applications copying build/lib.macosx-10.9-x86_64-2.7/Bio/Motif/Applications/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Motif/Applications copying build/lib.macosx-10.9-x86_64-2.7/Bio/Motif/Applications/_AlignAce.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Motif/Applications creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Motif/Parsers copying build/lib.macosx-10.9-x86_64-2.7/Bio/Motif/Parsers/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Motif/Parsers copying build/lib.macosx-10.9-x86_64-2.7/Bio/Motif/Parsers/AlignAce.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Motif/Parsers copying build/lib.macosx-10.9-x86_64-2.7/Bio/Motif/Parsers/MAST.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Motif/Parsers copying build/lib.macosx-10.9-x86_64-2.7/Bio/Motif/Parsers/MEME.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Motif/Parsers copying build/lib.macosx-10.9-x86_64-2.7/Bio/Motif/Thresholds.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Motif copying build/lib.macosx-10.9-x86_64-2.7/Bio/NaiveBayes.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork copying build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork/BackPropagation copying build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork/BackPropagation/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork/BackPropagation copying build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork/BackPropagation/Layer.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork/BackPropagation copying build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork/BackPropagation/Network.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork/BackPropagation creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork/Gene copying build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork/Gene/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork/Gene copying build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork/Gene/Motif.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork/Gene copying build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork/Gene/Pattern.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork/Gene copying build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork/Gene/Schema.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork/Gene copying build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork/Gene/Signature.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork/Gene copying build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork/StopTraining.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork copying build/lib.macosx-10.9-x86_64-2.7/Bio/NeuralNetwork/Training.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Nexus copying build/lib.macosx-10.9-x86_64-2.7/Bio/Nexus/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Nexus copying build/lib.macosx-10.9-x86_64-2.7/Bio/Nexus/cnexus.so -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Nexus copying build/lib.macosx-10.9-x86_64-2.7/Bio/Nexus/Nexus.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Nexus copying build/lib.macosx-10.9-x86_64-2.7/Bio/Nexus/Nodes.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Nexus copying build/lib.macosx-10.9-x86_64-2.7/Bio/Nexus/Trees.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Nexus creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NMR copying build/lib.macosx-10.9-x86_64-2.7/Bio/NMR/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NMR copying build/lib.macosx-10.9-x86_64-2.7/Bio/NMR/NOEtools.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NMR copying build/lib.macosx-10.9-x86_64-2.7/Bio/NMR/xpktools.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NMR copying build/lib.macosx-10.9-x86_64-2.7/Bio/pairwise2.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio copying build/lib.macosx-10.9-x86_64-2.7/Bio/ParserSupport.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Pathway copying build/lib.macosx-10.9-x86_64-2.7/Bio/Pathway/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Pathway creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Pathway/Rep copying build/lib.macosx-10.9-x86_64-2.7/Bio/Pathway/Rep/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Pathway/Rep copying build/lib.macosx-10.9-x86_64-2.7/Bio/Pathway/Rep/Graph.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Pathway/Rep copying build/lib.macosx-10.9-x86_64-2.7/Bio/Pathway/Rep/HashSet.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Pathway/Rep copying build/lib.macosx-10.9-x86_64-2.7/Bio/Pathway/Rep/MultiGraph.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Pathway/Rep creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/AbstractPropertyMap.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/Atom.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/Chain.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/Dice.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/DSSP.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/Entity.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/FragmentMapper.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/HSExposure.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/mmCIF copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/mmCIF/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/mmCIF copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/mmCIF/MMCIFlex.so -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/mmCIF copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/MMCIF2Dict.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/MMCIFParser.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/Model.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/NACCESS.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/NeighborSearch.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/parse_pdb_header.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/PDBExceptions.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/PDBIO.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/PDBList.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/PDBParser.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/Polypeptide.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/PSEA.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/Residue.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/ResidueDepth.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/Selection.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/Structure.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/StructureAlignment.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/StructureBuilder.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/Superimposer.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB copying build/lib.macosx-10.9-x86_64-2.7/Bio/PDB/Vector.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo copying build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo copying build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/_io.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo copying build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/_sugar.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo copying build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/_utils.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo/Applications copying build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/Applications/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo/Applications copying build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/Applications/_Phyml.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo/Applications copying build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/BaseTree.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo copying build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/Newick.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo copying build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/NewickIO.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo copying build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/NexusIO.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo/PAML copying build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/PAML/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo/PAML copying build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/PAML/_paml.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo/PAML copying build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/PAML/_parse_baseml.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo/PAML copying build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/PAML/_parse_codeml.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo/PAML copying build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/PAML/_parse_yn00.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo/PAML copying build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/PAML/baseml.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo/PAML copying build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/PAML/chi2.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo/PAML copying build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/PAML/codeml.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo/PAML copying build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/PAML/yn00.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo/PAML copying build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/PhyloXML.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo copying build/lib.macosx-10.9-x86_64-2.7/Bio/Phylo/PhyloXMLIO.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/Async copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/Async/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/Async copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/Async/Local.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/Async creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/FDist copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/FDist/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/FDist copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/FDist/Async.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/FDist copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/FDist/Controller.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/FDist copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/FDist/Utils.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/FDist creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/GenePop copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/GenePop/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/GenePop copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/GenePop/Controller.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/GenePop copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/GenePop/EasyController.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/GenePop copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/GenePop/FileParser.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/GenePop copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/GenePop/LargeFileParser.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/GenePop copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/GenePop/Utils.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/GenePop creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/SimCoal copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/SimCoal copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/Async.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/SimCoal copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/Cache.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/SimCoal copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/Controller.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/SimCoal creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/SimCoal/data copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/data/bottle.par -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/SimCoal/data copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/data/decline_lambda.par -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/SimCoal/data copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/data/decline_split.par -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/SimCoal/data copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/data/island.par -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/SimCoal/data copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/data/simple.par -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/SimCoal/data copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/data/split_island.par -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/SimCoal/data copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/data/split_ssm_1d.par -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/SimCoal/data copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/data/split_ssm_2d.par -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/SimCoal/data copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/data/ssm_1d.par -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/SimCoal/data copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/data/ssm_2d.par -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/SimCoal/data copying build/lib.macosx-10.9-x86_64-2.7/Bio/PopGen/SimCoal/Template.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/SimCoal creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Restriction copying build/lib.macosx-10.9-x86_64-2.7/Bio/Restriction/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Restriction creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Restriction/_Update copying build/lib.macosx-10.9-x86_64-2.7/Bio/Restriction/_Update/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Restriction/_Update copying build/lib.macosx-10.9-x86_64-2.7/Bio/Restriction/_Update/RestrictionCompiler.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Restriction/_Update copying build/lib.macosx-10.9-x86_64-2.7/Bio/Restriction/_Update/Update.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Restriction/_Update copying build/lib.macosx-10.9-x86_64-2.7/Bio/Restriction/PrintFormat.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Restriction copying build/lib.macosx-10.9-x86_64-2.7/Bio/Restriction/RanaConfig.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Restriction copying build/lib.macosx-10.9-x86_64-2.7/Bio/Restriction/Restriction.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Restriction copying build/lib.macosx-10.9-x86_64-2.7/Bio/Restriction/Restriction_Dictionary.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Restriction creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SCOP copying build/lib.macosx-10.9-x86_64-2.7/Bio/SCOP/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SCOP copying build/lib.macosx-10.9-x86_64-2.7/Bio/SCOP/Cla.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SCOP copying build/lib.macosx-10.9-x86_64-2.7/Bio/SCOP/Des.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SCOP copying build/lib.macosx-10.9-x86_64-2.7/Bio/SCOP/Dom.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SCOP copying build/lib.macosx-10.9-x86_64-2.7/Bio/SCOP/Hie.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SCOP copying build/lib.macosx-10.9-x86_64-2.7/Bio/SCOP/Raf.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SCOP copying build/lib.macosx-10.9-x86_64-2.7/Bio/SCOP/Residues.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SCOP copying build/lib.macosx-10.9-x86_64-2.7/Bio/Search.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio copying build/lib.macosx-10.9-x86_64-2.7/Bio/Seq.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqFeature.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO/_convert.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO/_index.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO/AbiIO.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO/AceIO.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO/FastaIO.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO/IgIO.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO/InsdcIO.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO/Interfaces.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO/PhdIO.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO/PirIO.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO/QualityIO.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO/SeqXmlIO.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO/SffIO.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO/SwissIO.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO/TabIO.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqIO/UniprotIO.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqRecord.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Sequencing copying build/lib.macosx-10.9-x86_64-2.7/Bio/Sequencing/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Sequencing copying build/lib.macosx-10.9-x86_64-2.7/Bio/Sequencing/Ace.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Sequencing creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Sequencing/Applications copying build/lib.macosx-10.9-x86_64-2.7/Bio/Sequencing/Applications/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Sequencing/Applications copying build/lib.macosx-10.9-x86_64-2.7/Bio/Sequencing/Applications/_Novoalign.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Sequencing/Applications copying build/lib.macosx-10.9-x86_64-2.7/Bio/Sequencing/Phd.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Sequencing creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqUtils copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqUtils/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqUtils copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqUtils/CheckSum.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqUtils copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqUtils/CodonUsage.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqUtils copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqUtils/CodonUsageIndices.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqUtils copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqUtils/IsoelectricPoint.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqUtils copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqUtils/lcc.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqUtils copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqUtils/MeltingTemp.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqUtils copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqUtils/ProtParam.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqUtils copying build/lib.macosx-10.9-x86_64-2.7/Bio/SeqUtils/ProtParamData.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqUtils creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Statistics copying build/lib.macosx-10.9-x86_64-2.7/Bio/Statistics/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Statistics copying build/lib.macosx-10.9-x86_64-2.7/Bio/Statistics/lowess.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Statistics creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SubsMat copying build/lib.macosx-10.9-x86_64-2.7/Bio/SubsMat/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SubsMat copying build/lib.macosx-10.9-x86_64-2.7/Bio/SubsMat/FreqTable.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SubsMat copying build/lib.macosx-10.9-x86_64-2.7/Bio/SubsMat/MatrixInfo.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SubsMat creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SVDSuperimposer copying build/lib.macosx-10.9-x86_64-2.7/Bio/SVDSuperimposer/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SVDSuperimposer copying build/lib.macosx-10.9-x86_64-2.7/Bio/SVDSuperimposer/SVDSuperimposer.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SVDSuperimposer creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SwissProt copying build/lib.macosx-10.9-x86_64-2.7/Bio/SwissProt/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SwissProt copying build/lib.macosx-10.9-x86_64-2.7/Bio/SwissProt/KeyWList.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SwissProt creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/TogoWS copying build/lib.macosx-10.9-x86_64-2.7/Bio/TogoWS/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/TogoWS copying build/lib.macosx-10.9-x86_64-2.7/Bio/trie.so -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio copying build/lib.macosx-10.9-x86_64-2.7/Bio/triefind.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/UniGene copying build/lib.macosx-10.9-x86_64-2.7/Bio/UniGene/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/UniGene copying build/lib.macosx-10.9-x86_64-2.7/Bio/UniGene/UniGene.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/UniGene creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Wise copying build/lib.macosx-10.9-x86_64-2.7/Bio/Wise/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Wise copying build/lib.macosx-10.9-x86_64-2.7/Bio/Wise/dnal.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Wise copying build/lib.macosx-10.9-x86_64-2.7/Bio/Wise/psw.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Wise creating /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/BioSQL copying build/lib.macosx-10.9-x86_64-2.7/BioSQL/__init__.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/BioSQL copying build/lib.macosx-10.9-x86_64-2.7/BioSQL/BioSeq.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/BioSQL copying build/lib.macosx-10.9-x86_64-2.7/BioSQL/BioSeqDatabase.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/BioSQL copying build/lib.macosx-10.9-x86_64-2.7/BioSQL/DBUtils.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/BioSQL copying build/lib.macosx-10.9-x86_64-2.7/BioSQL/Loader.py -> /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/BioSQL byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/_py3k.py to _py3k.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Affy/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Affy/CelFile.py to CelFile.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align/AlignInfo.py to AlignInfo.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align/Applications/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align/Applications/_ClustalOmega.py to _ClustalOmega.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align/Applications/_Dialign.py to _Dialign.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align/Applications/_Mafft.py to _Mafft.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align/Applications/_Muscle.py to _Muscle.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align/Applications/_Prank.py to _Prank.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align/Applications/_Probcons.py to _Probcons.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Align/Generic.py to Generic.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/AlignIO/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/AlignIO/FastaIO.py to FastaIO.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/AlignIO/Interfaces.py to Interfaces.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/AlignIO/NexusIO.py to NexusIO.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Alphabet/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Alphabet/IUPAC.py to IUPAC.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Alphabet/Reduced.py to Reduced.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Application/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Blast/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Blast/Applications.py to Applications.pyc byte-compiling 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/sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Compass/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Crystal/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Data/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Data/CodonTable.py to CodonTable.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Data/IUPACData.py to IUPACData.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/DocSQL.py to DocSQL.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Emboss/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Emboss/Applications.py to Applications.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Emboss/Primer3.py to Primer3.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Entrez/Parser.py to Parser.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/ExPASy/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/ExPASy/Enzyme.py to Enzyme.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/ExPASy/Prodoc.py to Prodoc.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/ExPASy/Prosite.py to Prosite.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/File.py to File.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/FSSP/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/FSSP/fssp_rec.py to fssp_rec.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/FSSP/FSSPTools.py to FSSPTools.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/GA/Crossover/__init__.py to __init__.pyc 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/sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_CrossLink.py to _CrossLink.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/HMM/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/HMM/MarkovModel.py to MarkovModel.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/HMM/Trainer.py to Trainer.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/HMM/Utilities.py to Utilities.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/HotRand.py to HotRand.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Index.py to Index.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/KDTree/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/KDTree/KDTree.py to KDTree.pyc 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/sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/MaxEntropy.py to MaxEntropy.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Medline/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Motif/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Motif/_Motif.py to _Motif.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Motif/Applications/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Motif/Applications/_AlignAce.py to _AlignAce.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Motif/Parsers/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Motif/Parsers/AlignAce.py to AlignAce.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Motif/Parsers/MAST.py to MAST.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Motif/Parsers/MEME.py to MEME.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Motif/Thresholds.py to Thresholds.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NaiveBayes.py to NaiveBayes.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork/BackPropagation/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork/BackPropagation/Layer.py to Layer.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork/BackPropagation/Network.py to Network.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork/Gene/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork/Gene/Motif.py to Motif.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork/Gene/Pattern.py to Pattern.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork/Gene/Schema.py to Schema.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork/Gene/Signature.py to Signature.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork/StopTraining.py to StopTraining.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NeuralNetwork/Training.py to Training.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Nexus/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Nexus/Nexus.py to Nexus.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Nexus/Nodes.py to Nodes.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Nexus/Trees.py to Trees.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NMR/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NMR/NOEtools.py to NOEtools.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/NMR/xpktools.py to xpktools.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/pairwise2.py to pairwise2.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/ParserSupport.py to ParserSupport.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Pathway/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Pathway/Rep/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Pathway/Rep/Graph.py to Graph.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Pathway/Rep/HashSet.py to HashSet.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/Atom.py to Atom.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/Chain.py to Chain.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/Dice.py to Dice.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/DSSP.py to DSSP.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/Entity.py to Entity.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/HSExposure.py to HSExposure.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/mmCIF/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/Model.py to Model.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/NACCESS.py to NACCESS.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/PDBIO.py to PDBIO.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/PDBList.py to PDBList.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/PDBParser.py to PDBParser.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/Polypeptide.py to Polypeptide.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/PSEA.py to PSEA.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/Residue.py to Residue.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/Selection.py to Selection.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/Structure.py to Structure.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/Superimposer.py to Superimposer.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PDB/Vector.py to Vector.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo/_io.py to _io.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo/_sugar.py to _sugar.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo/_utils.py to _utils.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo/Applications/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo/Applications/_Phyml.py to _Phyml.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Phylo/BaseTree.py to BaseTree.pyc 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__init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/Async/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/Async/Local.py to Local.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/FDist/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/FDist/Async.py to Async.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/FDist/Controller.py to Controller.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/FDist/Utils.py to Utils.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/GenePop/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/GenePop/Controller.py to Controller.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/GenePop/FileParser.py to FileParser.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/GenePop/LargeFileParser.py to LargeFileParser.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/GenePop/Utils.py to Utils.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/SimCoal/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/SimCoal/Async.py to Async.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/SimCoal/Cache.py to Cache.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/SimCoal/Controller.py to Controller.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/PopGen/SimCoal/Template.py to Template.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Restriction/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Restriction/_Update/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Restriction/_Update/RestrictionCompiler.py to RestrictionCompiler.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Restriction/_Update/Update.py to Update.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Restriction/PrintFormat.py to PrintFormat.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Restriction/RanaConfig.py to RanaConfig.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Restriction/Restriction.py to Restriction.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SCOP/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SCOP/Cla.py to Cla.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SCOP/Des.py to Des.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SCOP/Dom.py to Dom.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SCOP/Hie.py to Hie.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SCOP/Raf.py to Raf.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SCOP/Residues.py to Residues.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Search.py to Search.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Seq.py to Seq.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqFeature.py to SeqFeature.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO/_convert.py to _convert.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO/_index.py to _index.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO/AbiIO.py to AbiIO.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO/AceIO.py to AceIO.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO/FastaIO.py to FastaIO.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO/IgIO.py to IgIO.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO/Interfaces.py to Interfaces.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO/PhdIO.py to PhdIO.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO/PirIO.py to PirIO.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO/QualityIO.py to QualityIO.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO/SeqXmlIO.py to SeqXmlIO.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO/SffIO.py to SffIO.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO/SwissIO.py to SwissIO.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO/TabIO.py to TabIO.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqIO/UniprotIO.py to UniprotIO.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqRecord.py to SeqRecord.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Sequencing/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Sequencing/Ace.py to Ace.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Sequencing/Applications/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Sequencing/Phd.py to Phd.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqUtils/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqUtils/CheckSum.py to CheckSum.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqUtils/CodonUsage.py to CodonUsage.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqUtils/CodonUsageIndices.py to CodonUsageIndices.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqUtils/lcc.py to lcc.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqUtils/ProtParam.py to ProtParam.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Statistics/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Statistics/lowess.py to lowess.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SubsMat/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SubsMat/FreqTable.py to FreqTable.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SubsMat/MatrixInfo.py to MatrixInfo.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SVDSuperimposer/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SVDSuperimposer/SVDSuperimposer.py to SVDSuperimposer.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SwissProt/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/SwissProt/KeyWList.py to KeyWList.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/TogoWS/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/triefind.py to triefind.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/UniGene/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/UniGene/UniGene.py to UniGene.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Wise/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Wise/dnal.py to dnal.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/Bio/Wise/psw.py to psw.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/BioSQL/__init__.py to __init__.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/BioSQL/BioSeq.py to BioSeq.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/BioSQL/DBUtils.py to DBUtils.pyc byte-compiling /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/BioSQL/Loader.py to Loader.pyc running install_egg_info running egg_info creating biopython.egg-info writing biopython.egg-info/PKG-INFO writing top-level names to biopython.egg-info/top_level.txt writing dependency_links to biopython.egg-info/dependency_links.txt writing manifest file 'biopython.egg-info/SOURCES.txt' reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Graphics/*' warning: no previously-included files matching '.cvsignore' found under directory '*' warning: no previously-included files matching '*.pyc' found under directory '*' writing manifest file 'biopython.egg-info/SOURCES.txt' Copying biopython.egg-info to /sw/build.build/root-biopython-py27-1.59-1/sw/lib/python2.7/site-packages/biopython-1.59-py2.7.egg-info running install_scripts mkdir -p /sw/build.build/root-biopython-py27-1.59-1/sw/share/biopython-py27 cp -R Tests Doc /sw/build.build/root-biopython-py27-1.59-1/sw/share/biopython-py27/ sudo -u fink-bld [ENV] sh -c /tmp/fink.eAQw6 /usr/bin/install -d -m 700 /sw/build.build/root-biopython-py27-1.59-1/sw/share/doc/biopython-py27 /bin/cp -r NEWS /sw/build.build/root-biopython-py27-1.59-1/sw/share/doc/biopython-py27/ /bin/cp -r README /sw/build.build/root-biopython-py27-1.59-1/sw/share/doc/biopython-py27/ /bin/cp -r CONTRIB /sw/build.build/root-biopython-py27-1.59-1/sw/share/doc/biopython-py27/ /bin/cp -r LICENSE /sw/build.build/root-biopython-py27-1.59-1/sw/share/doc/biopython-py27/ /bin/chmod -R go=u-w /sw/build.build/root-biopython-py27-1.59-1/sw/share/doc/biopython-py27 /bin/rm -f /sw/build.build/root-biopython-py27-1.59-1/sw/info/dir /sw/build.build/root-biopython-py27-1.59-1/sw/info/dir.old /sw/build.build/root-biopython-py27-1.59-1/sw/share/info/dir /sw/build.build/root-biopython-py27-1.59-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-biopython-py27-1.59-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/pythonmods dpkg-deb: building package `biopython-py27' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/pythonmods/biopython-py27_1.59-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-biopython-py27-1.59-1 (Reading database ... 14183 files and directories currently installed.) Removing fink-buildlock-biopython-py27-1.59-1 ...