printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild chemistry-file-smarts-pm 2>&1 The package 'chemistry-file-smarts-pm' will be built without being installed. Reading build dependency for chemistry-file-smarts-pm-0.22-1... Reading dependency for chemistry-file-smarts-pm-0.22-1... Reading build conflict for chemistry-file-smarts-pm-0.22-1... The package 'chemistry-file-smiles-pm' will be installed. Reading dependency for chemistry-file-smiles-pm-0.47-1... Reading runtime dependency for chemistry-file-smiles-pm-0.47-1... The package 'chemistry-mol-pm' will be installed. Reading dependency for chemistry-mol-pm-0.37-1... Reading runtime dependency for chemistry-mol-pm-0.37-1... The package 'chemistry-pattern-pm' will be installed. Reading dependency for chemistry-pattern-pm-0.27-1... Reading runtime dependency for chemistry-pattern-pm-0.27-1... The package 'chemistry-ring-pm' will be installed. Reading dependency for chemistry-ring-pm-0.20-1... Reading runtime dependency for chemistry-ring-pm-0.20-1... The package 'chemistry-bond-find-pm' will be installed. Reading dependency for chemistry-bond-find-pm-0.23-1... Reading runtime dependency for chemistry-bond-find-pm-0.23-1... The package 'chemistry-canonicalize-pm' will be installed. Reading dependency for chemistry-canonicalize-pm-0.11-1... Reading runtime dependency for chemistry-canonicalize-pm-0.11-1... The package 'math-vectorreal-pm' will be installed. Reading dependency for math-vectorreal-pm-1.02-1... Reading runtime dependency for math-vectorreal-pm-1.02-1... The package 'statistics-regression-pm' will be installed. Reading dependency for statistics-regression-pm-0.53-2... Reading runtime dependency for statistics-regression-pm-0.53-2... The following package will be rebuilt: chemistry-file-smarts-pm The following 8 additional packages will be installed: chemistry-bond-find-pm chemistry-canonicalize-pm chemistry-file-smiles-pm chemistry-mol-pm chemistry-pattern-pm chemistry-ring-pm math-vectorreal-pm statistics-regression-pm Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/Chemistry-File-SMARTS-0.22.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 8605 100 8605 0 0 7248 0 0:00:01 0:00:01 --:--:-- 7323 Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/math-vectorreal-pm_1.02-1_darwin-x86_64.deb Selecting previously deselected package math-vectorreal-pm. (Reading database ... 100505 files and directories currently installed.) Unpacking math-vectorreal-pm (from .../math-vectorreal-pm_1.02-1_darwin-x86_64.deb) ... Setting up math-vectorreal-pm (1.02-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/statistics-regression-pm_0.53-2_darwin-x86_64.deb Selecting previously deselected package statistics-regression-pm. (Reading database ... 100520 files and directories currently installed.) Unpacking statistics-regression-pm (from .../statistics-regression-pm_0.53-2_darwin-x86_64.deb) ... Setting up statistics-regression-pm (0.53-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/chemistry-mol-pm_0.37-1_darwin-x86_64.deb Selecting previously deselected package chemistry-mol-pm. (Reading database ... 100531 files and directories currently installed.) Unpacking chemistry-mol-pm (from .../chemistry-mol-pm_0.37-1_darwin-x86_64.deb) ... Setting up chemistry-mol-pm (0.37-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/chemistry-pattern-pm_0.27-1_darwin-x86_64.deb Selecting previously deselected package chemistry-pattern-pm. (Reading database ... 100556 files and directories currently installed.) Unpacking chemistry-pattern-pm (from .../chemistry-pattern-pm_0.27-1_darwin-x86_64.deb) ... Setting up chemistry-pattern-pm (0.27-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/chemistry-ring-pm_0.20-1_darwin-x86_64.deb Selecting previously deselected package chemistry-ring-pm. (Reading database ... 100569 files and directories currently installed.) Unpacking chemistry-ring-pm (from .../chemistry-ring-pm_0.20-1_darwin-x86_64.deb) ... Setting up chemistry-ring-pm (0.20-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/chemistry-bond-find-pm_0.23-1_darwin-x86_64.deb Selecting previously deselected package chemistry-bond-find-pm. (Reading database ... 100580 files and directories currently installed.) Unpacking chemistry-bond-find-pm (from .../chemistry-bond-find-pm_0.23-1_darwin-x86_64.deb) ... Setting up chemistry-bond-find-pm (0.23-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/chemistry-canonicalize-pm_0.11-1_darwin-x86_64.deb Selecting previously deselected package chemistry-canonicalize-pm. (Reading database ... 100590 files and directories currently installed.) Unpacking chemistry-canonicalize-pm (from .../chemistry-canonicalize-pm_0.11-1_darwin-x86_64.deb) ... Setting up chemistry-canonicalize-pm (0.11-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/chemistry-file-smiles-pm_0.47-1_darwin-x86_64.deb Selecting previously deselected package chemistry-file-smiles-pm. (Reading database ... 100598 files and directories currently installed.) Unpacking chemistry-file-smiles-pm (from .../chemistry-file-smiles-pm_0.47-1_darwin-x86_64.deb) ... Setting up chemistry-file-smiles-pm (0.47-1) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-chemistry-file-smarts-pm-0.22-1 /sw/build.build dpkg-deb: building package `fink-buildlock-chemistry-file-smarts-pm-0.22-1' in `/sw/build.build/fink-buildlock-chemistry-file-smarts-pm-0.22-1_2014.07.30-21.52.19_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-chemistry-file-smarts-pm-0.22-1_2014.07.30-21.52.19_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-chemistry-file-smarts-pm-0.22-1. (Reading database ... 100608 files and directories currently installed.) Unpacking fink-buildlock-chemistry-file-smarts-pm-0.22-1 (from .../fink-buildlock-chemistry-file-smarts-pm-0.22-1_2014.07.30-21.52.19_darwin-x86_64.deb) ... Setting up fink-buildlock-chemistry-file-smarts-pm-0.22-1 (2014.07.30-21.52.19) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.xEet0 env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/Chemistry-File-SMARTS-0.22.tar.gz Chemistry-File-SMARTS-0.22/ Chemistry-File-SMARTS-0.22/Changes Chemistry-File-SMARTS-0.22/Makefile.PL Chemistry-File-SMARTS-0.22/MANIFEST Chemistry-File-SMARTS-0.22/META.yml Chemistry-File-SMARTS-0.22/README Chemistry-File-SMARTS-0.22/SMARTS.pm Chemistry-File-SMARTS-0.22/t/ Chemistry-File-SMARTS-0.22/t/atom_map.t Chemistry-File-SMARTS-0.22/t/pats/ Chemistry-File-SMARTS-0.22/t/pats/1.pat Chemistry-File-SMARTS-0.22/t/pats/2.pat Chemistry-File-SMARTS-0.22/t/pats/aliphatic.pat Chemistry-File-SMARTS-0.22/t/pats/arom1.pat Chemistry-File-SMARTS-0.22/t/pats/arom2.pat Chemistry-File-SMARTS-0.22/t/pats/aromatic.pat Chemistry-File-SMARTS-0.22/t/pats/arom_only.pat Chemistry-File-SMARTS-0.22/t/pats/arom_single.pat Chemistry-File-SMARTS-0.22/t/pats/atomic_number.pat Chemistry-File-SMARTS-0.22/t/pats/atom_low_and.pat Chemistry-File-SMARTS-0.22/t/pats/atom_map.pat Chemistry-File-SMARTS-0.22/t/pats/atom_not.pat Chemistry-File-SMARTS-0.22/t/pats/atom_or.pat Chemistry-File-SMARTS-0.22/t/pats/bond_not.pat Chemistry-File-SMARTS-0.22/t/pats/bond_or.pat Chemistry-File-SMARTS-0.22/t/pats/btatom.pat Chemistry-File-SMARTS-0.22/t/pats/btbond.pat Chemistry-File-SMARTS-0.22/t/pats/c.pat Chemistry-File-SMARTS-0.22/t/pats/charge_num.pat Chemistry-File-SMARTS-0.22/t/pats/class.pat Chemistry-File-SMARTS-0.22/t/pats/connections.pat Chemistry-File-SMARTS-0.22/t/pats/consecutive_branches.pat Chemistry-File-SMARTS-0.22/t/pats/c_c.pat Chemistry-File-SMARTS-0.22/t/pats/disconnected.pat Chemistry-File-SMARTS-0.22/t/pats/double_charge.pat Chemistry-File-SMARTS-0.22/t/pats/explicit_connection.pat Chemistry-File-SMARTS-0.22/t/pats/hydrogen_atom.pat Chemistry-File-SMARTS-0.22/t/pats/implicit_h.pat Chemistry-File-SMARTS-0.22/t/pats/mass.pat Chemistry-File-SMARTS-0.22/t/pats/noatom.pat Chemistry-File-SMARTS-0.22/t/pats/nobond.pat Chemistry-File-SMARTS-0.22/t/pats/nonringbond.pat Chemistry-File-SMARTS-0.22/t/pats/noring.pat Chemistry-File-SMARTS-0.22/t/pats/noring2.pat Chemistry-File-SMARTS-0.22/t/pats/noring3.pat Chemistry-File-SMARTS-0.22/t/pats/rec1.pat Chemistry-File-SMARTS-0.22/t/pats/rec2.pat Chemistry-File-SMARTS-0.22/t/pats/rec3.pat Chemistry-File-SMARTS-0.22/t/pats/rec4.pat Chemistry-File-SMARTS-0.22/t/pats/rec5.pat Chemistry-File-SMARTS-0.22/t/pats/ring.pat Chemistry-File-SMARTS-0.22/t/pats/ringatom.pat Chemistry-File-SMARTS-0.22/t/pats/ringatom2.pat Chemistry-File-SMARTS-0.22/t/pats/ringatomsize.pat Chemistry-File-SMARTS-0.22/t/pats/ringbond.pat Chemistry-File-SMARTS-0.22/t/pats/ringcount.pat Chemistry-File-SMARTS-0.22/t/pats/single_charge.pat Chemistry-File-SMARTS-0.22/t/pats/single_or_arom.pat Chemistry-File-SMARTS-0.22/t/pats/stack.pat Chemistry-File-SMARTS-0.22/t/pats/sym_ar.pat Chemistry-File-SMARTS-0.22/t/pats/sym_br.pat Chemistry-File-SMARTS-0.22/t/pats/total_h.pat Chemistry-File-SMARTS-0.22/t/pats/valence.pat Chemistry-File-SMARTS-0.22/t/pats/wildcard.pat Chemistry-File-SMARTS-0.22/t/pod.t Chemistry-File-SMARTS-0.22/t/SMARTS.t sudo -u fink-bld [ENV] sh -c /tmp/fink.e8L6H ARCHFLAGS="" /usr/bin/perl Makefile.PL PERL="/usr/bin/perl" PREFIX=/sw INSTALLPRIVLIB=/sw/lib/perl5 INSTALLARCHLIB=/sw/lib/perl5/darwin-thread-multi-2level INSTALLSITELIB=/sw/lib/perl5 INSTALLSITEARCH=/sw/lib/perl5/darwin-thread-multi-2level INSTALLMAN1DIR=/sw/share/man/man1 INSTALLMAN3DIR=/sw/share/man/man3 INSTALLSITEMAN1DIR=/sw/share/man/man1 INSTALLSITEMAN3DIR=/sw/share/man/man3 INSTALLBIN=/sw/bin INSTALLSITEBIN=/sw/bin INSTALLSCRIPT=/sw/bin Checking if your kit is complete... Looks good Writing Makefile for Chemistry::File::SMARTS Writing MYMETA.yml and MYMETA.json make CC=gcc CXX=g++ cp SMARTS.pm blib/lib/Chemistry/File/SMARTS.pm Manifying blib/man3/Chemistry::File::SMARTS.3pm /bin/rm -rf /sw/build.build/root-chemistry-file-smarts-pm-0.22-1 /bin/mkdir -p /sw/build.build/root-chemistry-file-smarts-pm-0.22-1/sw /bin/mkdir -p /sw/build.build/root-chemistry-file-smarts-pm-0.22-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-chemistry-file-smarts-pm-0.22-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.B6E6M make -j1 install PREFIX=/sw INSTALLPRIVLIB=/sw/lib/perl5 INSTALLARCHLIB=/sw/lib/perl5/darwin-thread-multi-2level INSTALLSITELIB=/sw/lib/perl5 INSTALLSITEARCH=/sw/lib/perl5/darwin-thread-multi-2level INSTALLMAN1DIR=/sw/share/man/man1 INSTALLMAN3DIR=/sw/share/man/man3 INSTALLSITEMAN1DIR=/sw/share/man/man1 INSTALLSITEMAN3DIR=/sw/share/man/man3 INSTALLBIN=/sw/bin INSTALLSITEBIN=/sw/bin INSTALLSCRIPT=/sw/bin DESTDIR=/sw/build.build/root-chemistry-file-smarts-pm-0.22-1 Manifying blib/man3/Chemistry::File::SMARTS.3pm Installing /sw/build.build/root-chemistry-file-smarts-pm-0.22-1/sw/lib/perl5/Chemistry/File/SMARTS.pm Installing /sw/build.build/root-chemistry-file-smarts-pm-0.22-1/sw/share/man/man3/Chemistry::File::SMARTS.3pm Appending installation info to /sw/build.build/root-chemistry-file-smarts-pm-0.22-1/sw/lib/perl5/darwin-thread-multi-2level/perllocal.pod sudo -u fink-bld [ENV] sh -c /tmp/fink.rnDBO /bin/mkdir -p /sw/build.build/root-chemistry-file-smarts-pm-0.22-1/sw/share/podfiles for i in `find /sw/build.build/root-chemistry-file-smarts-pm-0.22-1/sw -name perllocal.pod`; do /bin/cat $i | sed -e s,/sw/build.build/root-chemistry-file-smarts-pm-0.22-1/sw/lib/perl5,/sw/lib/perl5, >> /sw/build.build/root-chemistry-file-smarts-pm-0.22-1/sw/share/podfiles/perllocal.chemistry-file-smarts-pm.pod; /bin/rm -rf $i; done; /usr/bin/install -d -m 700 /sw/build.build/root-chemistry-file-smarts-pm-0.22-1/sw/share/doc/chemistry-file-smarts-pm /bin/cp -r Changes /sw/build.build/root-chemistry-file-smarts-pm-0.22-1/sw/share/doc/chemistry-file-smarts-pm/ /bin/cp -r README /sw/build.build/root-chemistry-file-smarts-pm-0.22-1/sw/share/doc/chemistry-file-smarts-pm/ /bin/chmod -R go=u-w /sw/build.build/root-chemistry-file-smarts-pm-0.22-1/sw/share/doc/chemistry-file-smarts-pm /bin/rm -f /sw/build.build/root-chemistry-file-smarts-pm-0.22-1/sw/info/dir /sw/build.build/root-chemistry-file-smarts-pm-0.22-1/sw/info/dir.old /sw/build.build/root-chemistry-file-smarts-pm-0.22-1/sw/share/info/dir /sw/build.build/root-chemistry-file-smarts-pm-0.22-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing package script postinst... Writing package script postrm... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-chemistry-file-smarts-pm-0.22-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/perlmods dpkg-deb: building package `chemistry-file-smarts-pm' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/perlmods/chemistry-file-smarts-pm_0.22-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-chemistry-file-smarts-pm-0.22-1 (Reading database ... 100609 files and directories currently installed.) Removing fink-buildlock-chemistry-file-smarts-pm-0.22-1 ...