printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-calibrate-r30 2>&1 The package 'cran-calibrate-r30' will be built without being installed. Reading build dependency for cran-calibrate-r30-1.7.2-1... Reading dependency for cran-calibrate-r30-1.7.2-1... Reading build conflict for cran-calibrate-r30-1.7.2-1... The package 'r-base30-dev' will be installed. Reading dependency for r-base30-dev-3.0.3-8... Reading runtime dependency for r-base30-dev-3.0.3-8... The package 'r-base30' will be installed. Reading dependency for r-base30-3.0.3-8... Reading runtime dependency for r-base30-3.0.3-8... The package 'cran-mass-r30' will be installed. Reading dependency for cran-mass-r30-7.3-32-2... Reading runtime dependency for cran-mass-r30-7.3-32-2... The package 'r-base30-shlibs' will be installed. Reading dependency for r-base30-shlibs-3.0.3-8... Reading runtime dependency for r-base30-shlibs-3.0.3-8... The package 'flag-sort' will be installed. Reading dependency for flag-sort-0.5-1... Reading runtime dependency for flag-sort-0.5-1... The package 'cairo-shlibs' will be installed. Reading dependency for cairo-shlibs-1.12.14-1... Reading runtime dependency for cairo-shlibs-1.12.14-1... The package 'gcc49-shlibs' will be installed. Reading dependency for gcc49-shlibs-4.9.1-1000... Reading runtime dependency for gcc49-shlibs-4.9.1-1000... The package 'glib2-shlibs' will be installed. Reading dependency for glib2-shlibs-2.22.4-8... Reading runtime dependency for glib2-shlibs-2.22.4-8... The package 'libicu48-shlibs' will be installed. Reading dependency for libicu48-shlibs-4.8.1.1-2... Reading runtime dependency for libicu48-shlibs-4.8.1.1-2... The package 'pango1-xft2-ft219-shlibs' will be installed. Reading dependency for pango1-xft2-ft219-shlibs-1.24.5-9... Reading runtime dependency for pango1-xft2-ft219-shlibs-1.24.5-9... The package 'libpcre1-shlibs' will be installed. Reading dependency for libpcre1-shlibs-8.35-1... Reading runtime dependency for libpcre1-shlibs-8.35-1... The package 'readline6-shlibs' will be installed. Reading dependency for readline6-shlibs-6.3.6-1... Reading runtime dependency for readline6-shlibs-6.3.6-1... The package 'tcltk' will be installed. Reading dependency for tcltk-8.6.1-104... Reading runtime dependency for tcltk-8.6.1-104... The package 'pixman-shlibs' will be installed. Reading dependency for pixman-shlibs-0.32.4-1... Reading runtime dependency for pixman-shlibs-0.32.4-1... The package 'xdg-base' will be installed. Reading dependency for xdg-base-0.8-2... Reading runtime dependency for xdg-base-0.8-2... The package 'libthai-shlibs' will be installed. Reading dependency for libthai-shlibs-0.1.20-1... Reading runtime dependency for libthai-shlibs-0.1.20-1... The package 'tcltk-shlibs' will be installed. Reading dependency for tcltk-shlibs-8.6.1-104... Reading runtime dependency for tcltk-shlibs-8.6.1-104... The package 'libdatrie1-shlibs' will be installed. Reading dependency for libdatrie1-shlibs-0.2.8-2... Reading runtime dependency for libdatrie1-shlibs-0.2.8-2... The package 'libthai' will be installed. Reading dependency for libthai-0.1.20-1... Reading runtime dependency for libthai-0.1.20-1... The following package will be rebuilt: cran-calibrate-r30 The following 19 additional packages will be installed: cairo-shlibs cran-mass-r30 flag-sort gcc49-shlibs glib2-shlibs libdatrie1-shlibs libicu48-shlibs libpcre1-shlibs libthai libthai-shlibs pango1-xft2-ft219-shlibs pixman-shlibs r-base30 r-base30-dev r-base30-shlibs readline6-shlibs tcltk tcltk-shlibs xdg-base Do you want to continue? [Y/n] (assuming default) Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/flag-sort_0.5-1_darwin-x86_64.deb Selecting previously deselected package flag-sort. (Reading database ... 99503 files and directories currently installed.) Unpacking flag-sort (from .../flag-sort_0.5-1_darwin-x86_64.deb) ... Setting up flag-sort (0.5-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/gcc49-shlibs_4.9.1-1000_darwin-x86_64.deb Selecting previously deselected package gcc49-shlibs. (Reading database ... 99504 files and directories currently installed.) Unpacking gcc49-shlibs (from .../gcc49-shlibs_4.9.1-1000_darwin-x86_64.deb) ... Setting up gcc49-shlibs (4.9.1-1000) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libdatrie1-shlibs_0.2.8-2_darwin-x86_64.deb Selecting previously deselected package libdatrie1-shlibs. (Reading database ... 99549 files and directories currently installed.) Unpacking libdatrie1-shlibs (from .../libdatrie1-shlibs_0.2.8-2_darwin-x86_64.deb) ... Setting up libdatrie1-shlibs (0.2.8-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libicu48-shlibs_4.8.1.1-2_darwin-x86_64.deb Selecting previously deselected package libicu48-shlibs. (Reading database ... 99556 files and directories currently installed.) Unpacking libicu48-shlibs (from .../libicu48-shlibs_4.8.1.1-2_darwin-x86_64.deb) ... Setting up libicu48-shlibs (4.8.1.1-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libpcre1-shlibs_8.35-1_darwin-x86_64.deb Selecting previously deselected package libpcre1-shlibs. (Reading database ... 99570 files and directories currently installed.) Unpacking libpcre1-shlibs (from .../libpcre1-shlibs_8.35-1_darwin-x86_64.deb) ... Setting up libpcre1-shlibs (8.35-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libthai-shlibs_0.1.20-1_darwin-x86_64.deb /sw/fink/debs/libthai_0.1.20-1_darwin-x86_64.deb Selecting previously deselected package libthai-shlibs. (Reading database ... 99583 files and directories currently installed.) Unpacking libthai-shlibs (from .../libthai-shlibs_0.1.20-1_darwin-x86_64.deb) ... Selecting previously deselected package libthai. Unpacking libthai (from .../libthai_0.1.20-1_darwin-x86_64.deb) ... Setting up libthai (0.1.20-1) ... Setting up libthai-shlibs (0.1.20-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/pixman-shlibs_0.32.4-1_darwin-x86_64.deb Selecting previously deselected package pixman-shlibs. (Reading database ... 99598 files and directories currently installed.) Unpacking pixman-shlibs (from .../pixman-shlibs_0.32.4-1_darwin-x86_64.deb) ... Setting up pixman-shlibs (0.32.4-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/readline6-shlibs_6.3.6-1_darwin-x86_64.deb Selecting previously deselected package readline6-shlibs. (Reading database ... 99602 files and directories currently installed.) Unpacking readline6-shlibs (from .../readline6-shlibs_6.3.6-1_darwin-x86_64.deb) ... Setting up readline6-shlibs (6.3.6-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/tcltk_8.6.1-104_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/tcltk-shlibs_8.6.1-104_darwin-x86_64.deb Selecting previously deselected package tcltk. (Reading database ... 99613 files and directories currently installed.) Unpacking tcltk (from .../tcltk_8.6.1-104_darwin-x86_64.deb) ... Selecting previously deselected package tcltk-shlibs. Unpacking tcltk-shlibs (from .../tcltk-shlibs_8.6.1-104_darwin-x86_64.deb) ... Setting up tcltk-shlibs (8.6.1-104) ... Setting up tcltk (8.6.1-104) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/xdg-base_0.8-2_darwin-x86_64.deb Selecting previously deselected package xdg-base. (Reading database ... 100089 files and directories currently installed.) Unpacking xdg-base (from .../xdg-base_0.8-2_darwin-x86_64.deb) ... Setting up xdg-base (0.8-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/cairo-shlibs_1.12.14-1_darwin-x86_64.deb Selecting previously deselected package cairo-shlibs. (Reading database ... 100091 files and directories currently installed.) Unpacking cairo-shlibs (from .../cairo-shlibs_1.12.14-1_darwin-x86_64.deb) ... Setting up cairo-shlibs (1.12.14-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/glib2-shlibs_2.22.4-8_darwin-x86_64.deb Selecting previously deselected package glib2-shlibs. (Reading database ... 100110 files and directories currently installed.) Unpacking glib2-shlibs (from .../glib2-shlibs_2.22.4-8_darwin-x86_64.deb) ... Setting up glib2-shlibs (2.22.4-8) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/gnome/pango1-xft2-ft219-shlibs_1.24.5-9_darwin-x86_64.deb Selecting previously deselected package pango1-xft2-ft219-shlibs. (Reading database ... 100337 files and directories currently installed.) Unpacking pango1-xft2-ft219-shlibs (from .../pango1-xft2-ft219-shlibs_1.24.5-9_darwin-x86_64.deb) ... Setting up pango1-xft2-ft219-shlibs (1.24.5-9) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base30_3.0.3-8_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base30-shlibs_3.0.3-8_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base30-dev_3.0.3-8_darwin-x86_64.deb Selecting previously deselected package r-base30. (Reading database ... 100381 files and directories currently installed.) Unpacking r-base30 (from .../r-base30_3.0.3-8_darwin-x86_64.deb) ... Selecting previously deselected package r-base30-shlibs. Unpacking r-base30-shlibs (from .../r-base30-shlibs_3.0.3-8_darwin-x86_64.deb) ... Selecting previously deselected package r-base30-dev. Unpacking r-base30-dev (from .../r-base30-dev_3.0.3-8_darwin-x86_64.deb) ... Setting up r-base30-shlibs (3.0.3-8) ... Setting up r-base30-dev (3.0.3-8) ... Setting up r-base30 (3.0.3-8) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/cran-mass-r30_7.3-32-2_darwin-x86_64.deb Selecting previously deselected package cran-mass-r30. (Reading database ... 102361 files and directories currently installed.) Unpacking cran-mass-r30 (from .../cran-mass-r30_7.3-32-2_darwin-x86_64.deb) ... Setting up cran-mass-r30 (7.3-32-2) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-calibrate-r30-1.7.2-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-calibrate-r30-1.7.2-1' in `/sw/build.build/fink-buildlock-cran-calibrate-r30-1.7.2-1_2014.07.31-18.51.10_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-calibrate-r30-1.7.2-1_2014.07.31-18.51.10_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-calibrate-r30-1.7.2-1. (Reading database ... 102429 files and directories currently installed.) Unpacking fink-buildlock-cran-calibrate-r30-1.7.2-1 (from .../fink-buildlock-cran-calibrate-r30-1.7.2-1_2014.07.31-18.51.10_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-calibrate-r30-1.7.2-1 (2014.07.31-18.51.10) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.xVT8f env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/calibrate_1.7.2.tar.gz calibrate/ calibrate/inst/ calibrate/inst/doc/ calibrate/inst/doc/CalibrationGuide.R calibrate/inst/doc/CalibrationGuide.Rnw calibrate/inst/doc/CalibrationGuide.pdf calibrate/NAMESPACE calibrate/data/ calibrate/data/storks.rda calibrate/data/heads.rda calibrate/data/linnerud.rda calibrate/data/goblets.rda calibrate/data/calves.rda calibrate/R/ calibrate/R/ones.R calibrate/R/half.R calibrate/R/circle.R calibrate/R/rad2degree.R calibrate/R/shiftvector.R calibrate/R/calibrate.R calibrate/R/origin.R calibrate/R/dlines.R calibrate/R/textxy.R calibrate/R/canocor.R calibrate/R/mhalf.R calibrate/R/rda.R calibrate/vignettes/ calibrate/vignettes/CalibrationGuide.Rnw calibrate/MD5 calibrate/DESCRIPTION calibrate/man/ calibrate/man/rda.Rd calibrate/man/canocor.Rd calibrate/man/dlines.Rd calibrate/man/origin.Rd calibrate/man/rad2degree.Rd calibrate/man/shiftvector.Rd calibrate/man/ones.Rd calibrate/man/textxy.Rd calibrate/man/storks.Rd calibrate/man/heads.Rd calibrate/man/calves.Rd calibrate/man/linnerud.Rd calibrate/man/goblets.Rd calibrate/man/circle.Rd calibrate/man/calibrate.Rd sudo -u fink-bld [ENV] sh -c /tmp/fink.TsmsJ /tmp/fink._yp60 #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-calibrate-r30-1.7.2-1/calibrate/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R pushd .. /sw/build.build/cran-calibrate-r30-1.7.2-1 /sw/build.build/cran-calibrate-r30-1.7.2-1/calibrate if [[ 3.0 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes calibrate else $BIN_R --verbose CMD build --no-vignettes calibrate fi * checking for file 'calibrate/DESCRIPTION' ... OK * preparing 'calibrate': * checking DESCRIPTION meta-information ... OK * checking for LF line-endings in source and make files * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added * building 'calibrate_1.7.2.tar.gz' /bin/rm -rf /sw/build.build/root-cran-calibrate-r30-1.7.2-1 /bin/mkdir -p /sw/build.build/root-cran-calibrate-r30-1.7.2-1/sw /bin/mkdir -p /sw/build.build/root-cran-calibrate-r30-1.7.2-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-calibrate-r30-1.7.2-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.rRyxS /tmp/fink.hlfsW #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R mkdir -p /sw/build.build/root-cran-calibrate-r30-1.7.2-1/sw/lib/R/3.0/site-library pushd /sw/build.build/cran-calibrate-r30-1.7.2-1/calibrate/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-calibrate-r30-1.7.2-1/sw/lib/R/3.0/site-library calibrate /sw/build.build/cran-calibrate-r30-1.7.2-1 /sw/build.build/cran-calibrate-r30-1.7.2-1/calibrate * installing *source* package 'calibrate' ... ** package 'calibrate' successfully unpacked and MD5 sums checked ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (calibrate) sudo -u fink-bld [ENV] sh -c /tmp/fink.SR7jw /bin/rm -f /sw/build.build/root-cran-calibrate-r30-1.7.2-1/sw/info/dir /sw/build.build/root-cran-calibrate-r30-1.7.2-1/sw/info/dir.old /sw/build.build/root-cran-calibrate-r30-1.7.2-1/sw/share/info/dir /sw/build.build/root-cran-calibrate-r30-1.7.2-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-calibrate-r30-1.7.2-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-calibrate-r30' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-calibrate-r30_1.7.2-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-calibrate-r30-1.7.2-1 (Reading database ... 102430 files and directories currently installed.) Removing fink-buildlock-cran-calibrate-r30-1.7.2-1 ...