printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-coda-r215 2>&1 The package 'cran-coda-r215' will be built without being installed. Reading build dependency for cran-coda-r215-0.16-1-1... Reading dependency for cran-coda-r215-0.16-1-1... Reading build conflict for cran-coda-r215-0.16-1-1... The package 'r-base215-dev' will be installed. Reading dependency for r-base215-dev-2.15.3-112... Reading runtime dependency for r-base215-dev-2.15.3-112... The package 'r-base215' will be installed. Reading dependency for r-base215-2.15.3-112... Reading runtime dependency for r-base215-2.15.3-112... The package 'cran-lattice-r215' will be installed. Reading dependency for cran-lattice-r215-0.20-29-2... Reading runtime dependency for cran-lattice-r215-0.20-29-2... The package 'r-base215-shlibs' will be installed. Reading dependency for r-base215-shlibs-2.15.3-112... Reading runtime dependency for r-base215-shlibs-2.15.3-112... The following package will be rebuilt: cran-coda-r215 The following 4 additional packages will be installed: cran-lattice-r215 r-base215 r-base215-dev r-base215-shlibs Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/coda_0.16-1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 74195 100 74195 0 0 135k 0 --:--:-- --:--:-- --:--:-- 135k Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base215_2.15.3-112_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base215-shlibs_2.15.3-112_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base215-dev_2.15.3-112_darwin-x86_64.deb Selecting previously deselected package r-base215. (Reading database ... 7371 files and directories currently installed.) Unpacking r-base215 (from .../r-base215_2.15.3-112_darwin-x86_64.deb) ... Selecting previously deselected package r-base215-shlibs. Unpacking r-base215-shlibs (from .../r-base215-shlibs_2.15.3-112_darwin-x86_64.deb) ... Selecting previously deselected package r-base215-dev. dpkg: considering removing r-base31-dev in favour of r-base215-dev ... dpkg: yes, will remove r-base31-dev in favour of r-base215-dev. Unpacking r-base215-dev (from .../r-base215-dev_2.15.3-112_darwin-x86_64.deb) ... Setting up r-base215-shlibs (2.15.3-112) ... Setting up r-base215-dev (2.15.3-112) ... Setting up r-base215 (2.15.3-112) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/cran-lattice-r215_0.20-29-2_darwin-x86_64.deb Selecting previously deselected package cran-lattice-r215. (Reading database ... 9473 files and directories currently installed.) Unpacking cran-lattice-r215 (from .../cran-lattice-r215_0.20-29-2_darwin-x86_64.deb) ... Setting up cran-lattice-r215 (0.20-29-2) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-coda-r215-0.16-1-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-coda-r215-0.16-1-1' in `/sw/build.build/fink-buildlock-cran-coda-r215-0.16-1-1_2014.07.27-10.36.00_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-coda-r215-0.16-1-1_2014.07.27-10.36.00_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-coda-r215-0.16-1-1. (Reading database ... 9530 files and directories currently installed.) Unpacking fink-buildlock-cran-coda-r215-0.16-1-1 (from .../fink-buildlock-cran-coda-r215-0.16-1-1_2014.07.27-10.36.00_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-coda-r215-0.16-1-1 (2014.07.27-10.36.00) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.eKMuw env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/coda_0.16-1.tar.gz coda/ coda/MD5 coda/AUTHORS coda/misc/ coda/misc/change.tfoption.Rd coda/misc/read.yesno.Rd coda/misc/set.mfrow.Rd coda/misc/codamenu2.Rd coda/inst/ coda/inst/CITATION coda/R/ coda/R/mcmc.R coda/R/rejectionRate.R coda/R/mcmclist.R coda/R/jags.R coda/R/batchSE.R coda/R/thin.R coda/R/output.R coda/R/raftery.R coda/R/geweke.R coda/R/autocorrdiag.R coda/R/HPDinterval.R coda/R/gelman.R coda/R/mcextractor.R coda/R/heidel.R coda/R/cumuplot.R coda/R/codamenu.R coda/R/util.R coda/R/trellisplots.R coda/NAMESPACE coda/CHANGELOG coda/data/ coda/data/line.rda coda/DESCRIPTION coda/man/ coda/man/HPDinterval.Rd coda/man/geweke.plot.Rd coda/man/crosscorr.Rd coda/man/varnames.Rd coda/man/Cramer.Rd coda/man/spectrum0.Rd coda/man/autocorr.plot.Rd coda/man/mcmc.list.Rd coda/man/crosscorr.plot.Rd coda/man/cumuplot.Rd coda/man/time.mcmc.Rd coda/man/raftery.diag.Rd coda/man/mcmc.convert.Rd coda/man/multi.menu.Rd coda/man/mcmcUpgrade.Rd coda/man/mcmc.subset.Rd coda/man/bugs2jags.Rd coda/man/autocorr.diag.Rd coda/man/gelman.plot.Rd coda/man/autocorr.Rd coda/man/geweke.diag.Rd coda/man/nchain.Rd coda/man/linepost.Rd coda/man/mcpar.Rd coda/man/effectiveSize.Rd coda/man/as.ts.mcmc.Rd coda/man/window.mcmc.Rd coda/man/read.coda.Rd coda/man/thin.Rd coda/man/coda.options.Rd coda/man/trellisplots.Rd coda/man/plot.mcmc.Rd coda/man/gelman.diag.Rd coda/man/heidel.diag.Rd coda/man/spectrum0.ar.Rd coda/man/read.openbugs.Rd coda/man/densplot.Rd coda/man/traceplot.Rd coda/man/batchSE.Rd coda/man/codamenu.Rd coda/man/read.and.check.Rd coda/man/summary.mcmc.Rd coda/man/mcmc.Rd coda/man/rejectionRate.Rd coda/man/read.coda.interactive.Rd coda/README coda/INDEX sudo -u fink-bld [ENV] sh -c /tmp/fink.thKVi /tmp/fink.EcVZY #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-coda-r215-0.16-1-1/coda/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R pushd .. /sw/build.build/cran-coda-r215-0.16-1-1 /sw/build.build/cran-coda-r215-0.16-1-1/coda if [[ 2.15 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes coda else $BIN_R --verbose CMD build --no-vignettes coda fi WARNING: ignoring environment value of R_HOME * checking for file 'coda/DESCRIPTION' ... OK * preparing 'coda': * checking DESCRIPTION meta-information ... OK * checking whether 'INDEX' is up-to-date ... NO * use '--force' to remove the existing 'INDEX' * checking for LF line-endings in source and make files * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added * building 'coda_0.16-1.tar.gz' /bin/rm -rf /sw/build.build/root-cran-coda-r215-0.16-1-1 /bin/mkdir -p /sw/build.build/root-cran-coda-r215-0.16-1-1/sw /bin/mkdir -p /sw/build.build/root-cran-coda-r215-0.16-1-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-coda-r215-0.16-1-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.ySkqS /tmp/fink.PdgKs #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R mkdir -p /sw/build.build/root-cran-coda-r215-0.16-1-1/sw/lib/R/2.15/site-library pushd /sw/build.build/cran-coda-r215-0.16-1-1/coda/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-coda-r215-0.16-1-1/sw/lib/R/2.15/site-library coda /sw/build.build/cran-coda-r215-0.16-1-1 /sw/build.build/cran-coda-r215-0.16-1-1/coda WARNING: ignoring environment value of R_HOME * installing *source* package 'coda' ... ** package 'coda' successfully unpacked and MD5 sums checked ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (coda) sudo -u fink-bld [ENV] sh -c /tmp/fink.sWyO9 /bin/rm -f /sw/build.build/root-cran-coda-r215-0.16-1-1/sw/info/dir /sw/build.build/root-cran-coda-r215-0.16-1-1/sw/info/dir.old /sw/build.build/root-cran-coda-r215-0.16-1-1/sw/share/info/dir /sw/build.build/root-cran-coda-r215-0.16-1-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-coda-r215-0.16-1-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-coda-r215' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-coda-r215_0.16-1-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-coda-r215-0.16-1-1 (Reading database ... 9531 files and directories currently installed.) Removing fink-buildlock-cran-coda-r215-0.16-1-1 ...