printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-corpcor-r215 2>&1 The package 'cran-corpcor-r215' will be built without being installed. Reading build dependency for cran-corpcor-r215-1.6.6-1... Reading dependency for cran-corpcor-r215-1.6.6-1... Reading build conflict for cran-corpcor-r215-1.6.6-1... The package 'r-base215-dev' will be installed. Reading dependency for r-base215-dev-2.15.3-111... Reading runtime dependency for r-base215-dev-2.15.3-111... The package 'r-base215' will be installed. Reading dependency for r-base215-2.15.3-111... Reading runtime dependency for r-base215-2.15.3-111... The package 'r-base215-shlibs' will be installed. Reading dependency for r-base215-shlibs-2.15.3-111... Reading runtime dependency for r-base215-shlibs-2.15.3-111... The following package will be rebuilt: cran-corpcor-r215 The following 3 additional packages will be installed: r-base215 r-base215-dev r-base215-shlibs Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/corpcor_1.6.6.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 5 22413 5 1208 0 0 4820 0 0:00:04 --:--:-- 0:00:04 4812 100 22413 100 22413 0 0 63281 0 --:--:-- --:--:-- --:--:-- 63135 Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base215_2.15.3-111_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base215-shlibs_2.15.3-111_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base215-dev_2.15.3-111_darwin-x86_64.deb Selecting previously deselected package r-base215. (Reading database ... 7370 files and directories currently installed.) Unpacking r-base215 (from .../r-base215_2.15.3-111_darwin-x86_64.deb) ... Selecting previously deselected package r-base215-shlibs. Unpacking r-base215-shlibs (from .../r-base215-shlibs_2.15.3-111_darwin-x86_64.deb) ... Selecting previously deselected package r-base215-dev. dpkg: considering removing r-base31-dev in favour of r-base215-dev ... dpkg: yes, will remove r-base31-dev in favour of r-base215-dev. Unpacking r-base215-dev (from .../r-base215-dev_2.15.3-111_darwin-x86_64.deb) ... Setting up r-base215-shlibs (2.15.3-111) ... Setting up r-base215-dev (2.15.3-111) ... Setting up r-base215 (2.15.3-111) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-corpcor-r215-1.6.6-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-corpcor-r215-1.6.6-1' in `/sw/build.build/fink-buildlock-cran-corpcor-r215-1.6.6-1_2014.07.25-08.02.34_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-corpcor-r215-1.6.6-1_2014.07.25-08.02.34_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-corpcor-r215-1.6.6-1. (Reading database ... 9472 files and directories currently installed.) Unpacking fink-buildlock-cran-corpcor-r215-1.6.6-1 (from .../fink-buildlock-cran-corpcor-r215-1.6.6-1_2014.07.25-08.02.34_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-corpcor-r215-1.6.6-1 (2014.07.25-08.02.34) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.EBrXX env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/corpcor_1.6.6.tar.gz corpcor/ corpcor/MD5 corpcor/R/ corpcor/R/rank.condition.R corpcor/R/partial.R corpcor/R/shrink.intensity.R corpcor/R/rebuild.cov.R corpcor/R/pvt.svar.R corpcor/R/smtools.R corpcor/R/pvt.powscor.R corpcor/R/mpower.R corpcor/R/fast.svd.R corpcor/R/wt.scale.R corpcor/R/pvt.cppowscor.R corpcor/R/shrink.estimates.R corpcor/R/shrink.misc.R corpcor/R/pseudoinverse.R corpcor/NAMESPACE corpcor/man/ corpcor/man/invcov.shrink.Rd corpcor/man/rank.condition.Rd corpcor/man/pcor.shrink.Rd corpcor/man/powcor.shrink.Rd corpcor/man/fast.svd.Rd corpcor/man/mpower.Rd corpcor/man/cor2pcor.Rd corpcor/man/shrink.intensity.Rd corpcor/man/wt.scale.Rd corpcor/man/rebuild.cov.Rd corpcor/man/pseudoinverse.Rd corpcor/man/corpcor.package.Rd corpcor/man/corpcor-internal.Rd corpcor/man/cov.shrink.Rd corpcor/man/smtools.Rd corpcor/DESCRIPTION corpcor/NEWS sudo -u fink-bld [ENV] sh -c /tmp/fink.tSNzO /tmp/fink.1oBFm #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-corpcor-r215-1.6.6-1/corpcor/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R pushd .. /sw/build.build/cran-corpcor-r215-1.6.6-1 /sw/build.build/cran-corpcor-r215-1.6.6-1/corpcor if [[ 2.15 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes corpcor else $BIN_R --verbose CMD build --no-vignettes corpcor fi WARNING: ignoring environment value of R_HOME * checking for file 'corpcor/DESCRIPTION' ... OK * preparing 'corpcor': * checking DESCRIPTION meta-information ... OK * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building 'corpcor_1.6.6.tar.gz' /bin/rm -rf /sw/build.build/root-cran-corpcor-r215-1.6.6-1 /bin/mkdir -p /sw/build.build/root-cran-corpcor-r215-1.6.6-1/sw /bin/mkdir -p /sw/build.build/root-cran-corpcor-r215-1.6.6-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-corpcor-r215-1.6.6-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.YWHE1 /tmp/fink.Ozut6 #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R mkdir -p /sw/build.build/root-cran-corpcor-r215-1.6.6-1/sw/lib/R/2.15/site-library pushd /sw/build.build/cran-corpcor-r215-1.6.6-1/corpcor/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-corpcor-r215-1.6.6-1/sw/lib/R/2.15/site-library corpcor /sw/build.build/cran-corpcor-r215-1.6.6-1 /sw/build.build/cran-corpcor-r215-1.6.6-1/corpcor WARNING: ignoring environment value of R_HOME * installing *source* package 'corpcor' ... ** package 'corpcor' successfully unpacked and MD5 sums checked ** R ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (corpcor) sudo -u fink-bld [ENV] sh -c /tmp/fink.k1IVX /bin/rm -f /sw/build.build/root-cran-corpcor-r215-1.6.6-1/sw/info/dir /sw/build.build/root-cran-corpcor-r215-1.6.6-1/sw/info/dir.old /sw/build.build/root-cran-corpcor-r215-1.6.6-1/sw/share/info/dir /sw/build.build/root-cran-corpcor-r215-1.6.6-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-corpcor-r215-1.6.6-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-corpcor-r215' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-corpcor-r215_1.6.6-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-corpcor-r215-1.6.6-1 (Reading database ... 9473 files and directories currently installed.) Removing fink-buildlock-cran-corpcor-r215-1.6.6-1 ...