printf ' ' | fink --no-use-binary-dist --yes rebuild cran-earth-r215 2>&1 The package 'cran-earth-r215' will be built without being installed. Reading build dependency for cran-earth-r215-3.2-7-1... Reading dependency for cran-earth-r215-3.2-7-1... Reading build conflict for cran-earth-r215-3.2-7-1... The following package will be rebuilt: cran-earth-r215 Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-earth-r215-3.2-7-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-earth-r215-3.2-7-1' in `/sw/build.build/fink-buildlock-cran-earth-r215-3.2-7-1_2014.08.01-16.35.23_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-earth-r215-3.2-7-1_2014.08.01-16.35.23_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-earth-r215-3.2-7-1. (Reading database ... 7632 files and directories currently installed.) Unpacking fink-buildlock-cran-earth-r215-3.2-7-1 (from .../fink-buildlock-cran-earth-r215-3.2-7-1_2014.08.01-16.35.23_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-earth-r215-3.2-7-1 (2014.08.01-16.35.23) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.clPZ9 env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/earth_3.2-7.tar.gz earth/ earth/inst/ earth/inst/doc/ earth/inst/doc/earth-notes.Rnw earth/inst/doc/index.html earth/inst/doc/earth-notes.pdf earth/tests/ earth/tests/test.earth.Rout.save earth/tests/test.earth.R earth/tests/README.txt earth/src/ earth/src/Makevars earth/src/leaps.f earth/src/earth.c earth/src/tests/ earth/src/tests/check.models.equal.R earth/src/tests/test.earthmain.bat earth/src/tests/fast.postscript.R earth/src/tests/earth.times.R earth/src/tests/test.earthc.out.save earth/src/tests/test.earth.glm.bat earth/src/tests/test.earth.big.bat earth/src/tests/test.earthc.bat earth/src/tests/make.bat earth/src/tests/earth.times.bat earth/src/tests/test.earth.cv.bat earth/src/tests/test.earth.cv.R earth/src/tests/test.earth.cv.Rout.save earth/src/tests/test.plotd.Rout.save earth/src/tests/test.earthmain.gcc.bat earth/src/tests/test.earthmain.out.save earth/src/tests/test.earth.full.bat earth/src/tests/test.earth.glm.R earth/src/tests/test.earthc.c earth/src/tests/test.earthc.mak earth/src/tests/test.plotd.R earth/src/tests/test.plotd.bat earth/src/tests/README.txt earth/src/tests/earth.memory.txt earth/src/tests/test.earth.full.R earth/src/tests/test.earth.big.Rout.save earth/src/tests/test.earth.full.Rout.save earth/src/tests/test.earth.glm.Rout.save earth/src/tests/earth-timing-tests.txt earth/src/tests/test.earth.big.R earth/src/allowed.c earth/src/earth.h earth/src/allowed.h earth/src/leapshdr.f earth/NAMESPACE earth/NEWS earth/data/ earth/data/etitanic.rda earth/data/ozone1.rda earth/R/ earth/R/plotmo.methods.earth.R earth/R/format.earth.R earth/R/earth.cv.R earth/R/earth.regress.R earth/R/earthlib.R earth/R/print.earth.R earth/R/earth.cv.lib.R earth/R/earth.R earth/R/expand.arg.R earth/R/model.matrix.earth.R earth/R/predict.earth.R earth/R/evimp.R earth/R/earth.glm.R earth/R/plot.model.selection.R earth/R/earth.leaps.R earth/R/mars.to.earth.R earth/R/plot.earth.R earth/R/plotd.R earth/R/elegend.R earth/vignettes/ earth/vignettes/earth-notes.Rnw earth/vignettes/earth-notes.bib earth/vignettes/figs/ earth/vignettes/figs/cv.pdf earth/vignettes/figs/cv-plot-earth.pdf earth/vignettes/figs/earth-overview.jpg earth/vignettes/figs/cv-detailed.pdf earth/vignettes/figs/learning-curve.pdf earth/vignettes/figs/cv-variation.pdf earth/vignettes/figs/ncross.pdf earth/vignettes/figs/fda-plotmo.pdf earth/vignettes/figs/cv-example.pdf earth/vignettes/figs/fda-earth.pdf earth/vignettes/figs/trees.pdf earth/vignettes/figs/esl-fig71-lores.jpg earth/vignettes/figs/plotd-example.pdf earth/vignettes/figs/cube-transform.pdf earth/vignettes/figs/fda-lm.pdf earth/vignettes/figs/plot-earth.pdf earth/vignettes/figs/cv-folds.pdf earth/vignettes/figs/negative-grsq.pdf earth/vignettes/figs/scoring.pdf earth/vignettes/figs/fda.pdf earth/MD5 earth/build/ earth/build/vignette.rds earth/DESCRIPTION earth/man/ earth/man/etitanic.Rd earth/man/residuals.earth.Rd earth/man/predict.earth.Rd earth/man/evimp.Rd earth/man/plot.evimp.Rd earth/man/format.earth.Rd earth/man/plot.earth.Rd earth/man/summary.earth.Rd earth/man/print.evimp.Rd earth/man/model.matrix.earth.Rd earth/man/ozone1.Rd earth/man/mars.to.earth.Rd earth/man/update.earth.Rd earth/man/earth.Rd earth/man/plot.earth.models.Rd earth/man/plotd.Rd earth/man/contr.earth.response.Rd earth/.Rinstignore sudo -u fink-bld [ENV] sh -c /tmp/fink.Is7lf /tmp/fink.GXSpn #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-earth-r215-3.2-7-1/earth/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R pushd .. /sw/build.build/cran-earth-r215-3.2-7-1 /sw/build.build/cran-earth-r215-3.2-7-1/earth if [[ 2.15 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes earth else $BIN_R --verbose CMD build --no-vignettes earth fi * checking for file 'earth/DESCRIPTION' ... OK * preparing 'earth': * checking DESCRIPTION meta-information ... OK * cleaning src * checking for LF line-endings in source and make files * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added * building 'earth_3.2-7.tar.gz' /bin/rm -rf /sw/build.build/root-cran-earth-r215-3.2-7-1 /bin/mkdir -p /sw/build.build/root-cran-earth-r215-3.2-7-1/sw /bin/mkdir -p /sw/build.build/root-cran-earth-r215-3.2-7-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-earth-r215-3.2-7-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.In7TV /tmp/fink.Txpue #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R mkdir -p /sw/build.build/root-cran-earth-r215-3.2-7-1/sw/lib/R/2.15/site-library pushd /sw/build.build/cran-earth-r215-3.2-7-1/earth/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-earth-r215-3.2-7-1/sw/lib/R/2.15/site-library earth /sw/build.build/cran-earth-r215-3.2-7-1 /sw/build.build/cran-earth-r215-3.2-7-1/earth * installing *source* package 'earth' ... ** package 'earth' successfully unpacked and MD5 sums checked ** libs flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c allowed.c -o allowed.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c earth.c -o earth.o /sw/bin/gfortran-fsf-4.9 -fPIC -g -O3 -c leaps.f -o leaps.o make: /sw/bin/gfortran-fsf-4.9: No such file or directory make: *** [leaps.o] Error 1 ERROR: compilation failed for package 'earth' * removing '/sw/build.build/root-cran-earth-r215-3.2-7-1/sw/lib/R/2.15/site-library/earth' ### execution of /tmp/fink.Txpue failed, exit code 1 ### execution of /tmp/fink.In7TV failed, exit code 1 Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-earth-r215-3.2-7-1 (Reading database ... 7633 files and directories currently installed.) Removing fink-buildlock-cran-earth-r215-3.2-7-1 ... Failed: phase installing: cran-earth-r215-3.2-7-1 failed Before reporting any errors, please run "fink selfupdate" and try again. Also try using "fink configure" to set your maximum build jobs to 1 and attempt to build the package again. If you continue to have issues, please check to see if the FAQ on Fink's website solves the problem. If not, ask on one (not both, please) of these mailing lists: The Fink Users List The Fink Beginners List , with a carbon copy to the maintainer: Jack Howarth Note that this is preferable to emailing just the maintainer directly, since most fink package maintainers do not have access to all possible hardware and software configurations. Please try to include the complete error message in your report. This generally consists of a compiler line starting with e.g. "gcc" or "g++" followed by the actual error output from the compiler. Also include the following system information: Package manager version: 0.37.0 Distribution version: selfupdate-cvs Thu Jul 24 20:26:24 2014, 10.9, x86_64 Trees: local/main stable/main Xcode.app: 5.1.1 Xcode command-line tools: 6.0.0.0.1.1405597879 Max. Fink build jobs: 8