printf '
' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-elemstatlearn-r30 2>&1
The package 'cran-elemstatlearn-r30' will be built without being installed.
Reading build dependency for cran-elemstatlearn-r30-2012.04-0-1...
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The package 'r-base30-dev' will be installed.
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The package 'flag-sort' will be installed.
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The package 'cairo-shlibs' will be installed.
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The package 'gcc49-shlibs' will be installed.
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The package 'glib2-shlibs' will be installed.
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The package 'libicu48-shlibs' will be installed.
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The package 'libpng16-shlibs' will be installed.
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The package 'libtiff5-shlibs' will be installed.
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The package 'pango1-xft2-ft219-shlibs' will be installed.
Reading dependency for pango1-xft2-ft219-shlibs-1.24.5-9...
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The package 'libpcre1-shlibs' will be installed.
Reading dependency for libpcre1-shlibs-8.35-1...
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The package 'readline6-shlibs' will be installed.
Reading dependency for readline6-shlibs-6.3.6-1...
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The package 'tcltk' will be installed.
Reading dependency for tcltk-8.6.1-104...
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The package 'fontconfig2-shlibs' will be installed.
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The package 'freetype219-shlibs' will be installed.
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The package 'xdg-base' will be installed.
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The package 'xft2-shlibs' will be installed.
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The package 'tcltk-shlibs' will be installed.
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The package 'fontconfig-config' will be installed.
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The package 'expat1-shlibs' will be installed.
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The following package will be rebuilt:
cran-elemstatlearn-r30
The following 28 additional packages will be installed:
cairo-shlibs expat1-shlibs flag-sort fontconfig-config fontconfig2-shlibs
freetype219-shlibs gcc49-shlibs glib2-shlibs libdatrie1-shlibs
libicu48-shlibs libjbig-shlibs libjpeg9-shlibs liblzma5-shlibs
libpcre1-shlibs libpng16-shlibs libthai libthai-shlibs libtiff5-shlibs
pango1-xft2-ft219-shlibs pixman-shlibs r-base30 r-base30-dev r-base30-shlibs
readline6-shlibs tcltk tcltk-shlibs xdg-base xft2-shlibs
Do you want to continue? [Y/n] (assuming default)
curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/ElemStatLearn_2012.04-0.tar.gz
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dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-elemstatlearn-r30-2012.04-0-1 /sw/build.build
dpkg-deb: building package `fink-buildlock-cran-elemstatlearn-r30-2012.04-0-1' in `/sw/build.build/fink-buildlock-cran-elemstatlearn-r30-2012.04-0-1_2014.07.30-04.44.44_darwin-x86_64.deb'.
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Setting up fink-buildlock-cran-elemstatlearn-r30-2012.04-0-1 (2014.07.30-04.44.44) ...
sudo -u fink-bld [ENV] sh -c /tmp/fink.WqzYP
env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/ElemStatLearn_2012.04-0.tar.gz
ElemStatLearn/
ElemStatLearn/MD5
ElemStatLearn/data/
ElemStatLearn/data/ozone.RData
ElemStatLearn/data/bone.RData
ElemStatLearn/data/orange10.test.RData
ElemStatLearn/data/SAheart.RData
ElemStatLearn/data/orange4.train.RData
ElemStatLearn/data/phoneme.RData
ElemStatLearn/data/mixture.example.RData
ElemStatLearn/data/zip.train.RData
ElemStatLearn/data/galaxy.RData
ElemStatLearn/data/waveform.train.RData
ElemStatLearn/data/orange4.test.RData
ElemStatLearn/data/vowel.train.RData
ElemStatLearn/data/marketing.RData
ElemStatLearn/data/vowel.test.RData
ElemStatLearn/data/spam.RData
ElemStatLearn/data/prostate.RData
ElemStatLearn/data/waveform.test.RData
ElemStatLearn/data/countries.RData
ElemStatLearn/data/datalist
ElemStatLearn/data/orange10.train.RData
ElemStatLearn/data/zip.test.RData
ElemStatLearn/data/nci.RData
ElemStatLearn/DESCRIPTION
ElemStatLearn/NAMESPACE
ElemStatLearn/R/
ElemStatLearn/R/simple.ridge.R
ElemStatLearn/R/waveform.R
ElemStatLearn/R/zip2image.R
ElemStatLearn/NEWS
ElemStatLearn/man/
ElemStatLearn/man/countries.Rd
ElemStatLearn/man/orange10.test.Rd
ElemStatLearn/man/galaxy.Rd
ElemStatLearn/man/mixture.example.Rd
ElemStatLearn/man/phoneme.Rd
ElemStatLearn/man/zip.train.Rd
ElemStatLearn/man/SAheart.Rd
ElemStatLearn/man/prostate.Rd
ElemStatLearn/man/orange10.train.Rd
ElemStatLearn/man/nci.Rd
ElemStatLearn/man/waveform.Rd
ElemStatLearn/man/marketing.Rd
ElemStatLearn/man/waveform.train.Rd
ElemStatLearn/man/vowel.test.Rd
ElemStatLearn/man/simple.ridge.Rd
ElemStatLearn/man/waveform.test.Rd
ElemStatLearn/man/bone.Rd
ElemStatLearn/man/vowel.train.Rd
ElemStatLearn/man/zip2image.Rd
ElemStatLearn/man/spam.Rd
ElemStatLearn/man/zip.test.Rd
ElemStatLearn/man/ozone.Rd
ElemStatLearn/man/orange4.train.Rd
ElemStatLearn/man/orange4.test.Rd
sudo -u fink-bld [ENV] sh -c /tmp/fink._P8D2
/tmp/fink.WNl_R
#!/bin/bash -ev
export TMPDIR=/sw/build.build/cran-elemstatlearn-r30-2012.04-0-1/ElemStatLearn/tmp
BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R
pushd ..
/sw/build.build/cran-elemstatlearn-r30-2012.04-0-1 /sw/build.build/cran-elemstatlearn-r30-2012.04-0-1/ElemStatLearn
if [[ 3.0 > 2.15 ]]; then
$BIN_R --verbose CMD build --no-build-vignettes ElemStatLearn
else
$BIN_R --verbose CMD build --no-vignettes ElemStatLearn
fi
* checking for file 'ElemStatLearn/DESCRIPTION' ... OK
* preparing 'ElemStatLearn':
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* looking to see if a 'data/datalist' file should be added
* building 'ElemStatLearn_2012.04-0.tar.gz'
/bin/rm -rf /sw/build.build/root-cran-elemstatlearn-r30-2012.04-0-1
/bin/mkdir -p /sw/build.build/root-cran-elemstatlearn-r30-2012.04-0-1/sw
/bin/mkdir -p /sw/build.build/root-cran-elemstatlearn-r30-2012.04-0-1/DEBIAN
/usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-elemstatlearn-r30-2012.04-0-1
sudo -u fink-bld [ENV] sh -c /tmp/fink.ElCWA
/tmp/fink.JSSUL
#!/bin/sh -ev
BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R
mkdir -p /sw/build.build/root-cran-elemstatlearn-r30-2012.04-0-1/sw/lib/R/3.0/site-library
pushd /sw/build.build/cran-elemstatlearn-r30-2012.04-0-1/ElemStatLearn/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-elemstatlearn-r30-2012.04-0-1/sw/lib/R/3.0/site-library ElemStatLearn
/sw/build.build/cran-elemstatlearn-r30-2012.04-0-1 /sw/build.build/cran-elemstatlearn-r30-2012.04-0-1/ElemStatLearn
* installing *source* package 'ElemStatLearn' ...
** package 'ElemStatLearn' successfully unpacked and MD5 sums checked
** R
** data
*** moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (ElemStatLearn)
sudo -u fink-bld [ENV] sh -c /tmp/fink.1nCE2
/bin/rm -f /sw/build.build/root-cran-elemstatlearn-r30-2012.04-0-1/sw/info/dir /sw/build.build/root-cran-elemstatlearn-r30-2012.04-0-1/sw/info/dir.old /sw/build.build/root-cran-elemstatlearn-r30-2012.04-0-1/sw/share/info/dir /sw/build.build/root-cran-elemstatlearn-r30-2012.04-0-1/sw/share/info/dir.old
Reverting ownership of install dir to root
Writing control file...
Writing md5sums file...
env LANG=C LC_ALL=C dpkg-deb -b root-cran-elemstatlearn-r30-2012.04-0-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods
dpkg-deb: building package `cran-elemstatlearn-r30' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-elemstatlearn-r30_2012.04-0-1_darwin-x86_64.deb'.
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-cran-elemstatlearn-r30-2012.04-0-1
(Reading database ... 7299 files and directories currently installed.)
Removing fink-buildlock-cran-elemstatlearn-r30-2012.04-0-1 ...