printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-fingerprint-r30 2>&1 The package 'cran-fingerprint-r30' will be built without being installed. Reading build dependency for cran-fingerprint-r30-3.5.2-1... Reading dependency for cran-fingerprint-r30-3.5.2-1... Reading build conflict for cran-fingerprint-r30-3.5.2-1... The following package will be rebuilt: cran-fingerprint-r30 Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-fingerprint-r30-3.5.2-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-fingerprint-r30-3.5.2-1' in `/sw/build.build/fink-buildlock-cran-fingerprint-r30-3.5.2-1_2014.07.27-11.22.03_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-fingerprint-r30-3.5.2-1_2014.07.27-11.22.03_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-fingerprint-r30-3.5.2-1. (Reading database ... 7413 files and directories currently installed.) Unpacking fink-buildlock-cran-fingerprint-r30-3.5.2-1 (from .../fink-buildlock-cran-fingerprint-r30-3.5.2-1_2014.07.27-11.22.03_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-fingerprint-r30-3.5.2-1 (2014.07.27-11.22.03) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.wbwmI env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/fingerprint_3.5.2.tar.gz fingerprint/ fingerprint/inst/ fingerprint/inst/unitTests/ fingerprint/inst/unitTests/reportSummary.txt fingerprint/inst/unitTests/Makefile fingerprint/inst/unitTests/test.ecfp fingerprint/inst/unitTests/report.html fingerprint/inst/unitTests/runit.fp.R fingerprint/inst/unitTests/bits.fps fingerprint/inst/unitTests/report.txt fingerprint/tests/ fingerprint/tests/doRUnit.R fingerprint/src/ fingerprint/src/fpdistance.c fingerprint/src/readfps.c fingerprint/NAMESPACE fingerprint/R/ fingerprint/R/balance.R fingerprint/R/featurefp.R fingerprint/R/bitimp.R fingerprint/R/feature.R fingerprint/R/ops.R fingerprint/R/fingerprint.R fingerprint/R/bitspec.R fingerprint/R/misc.R fingerprint/R/read.R fingerprint/R/zzz.R fingerprint/R/matrix.R fingerprint/MD5 fingerprint/DESCRIPTION fingerprint/ChangeLog fingerprint/man/ fingerprint/man/vec.Rd fingerprint/man/show.Rd fingerprint/man/linefunc.Rd fingerprint/man/distance-methods.Rd fingerprint/man/shannon.Rd fingerprint/man/count-methods.Rd fingerprint/man/mat.Rd fingerprint/man/length.Rd fingerprint/man/string.Rd fingerprint/man/facmat.Rd fingerprint/man/c.Rd fingerprint/man/feature-methods.Rd fingerprint/man/fplogical.Rd fingerprint/man/bitspec.Rd fingerprint/man/feature.Rd fingerprint/man/read.Rd fingerprint/man/fold.Rd fingerprint/man/bitimp.Rd fingerprint/man/featvec.Rd fingerprint/man/balance.Rd fingerprint/man/fingerprint.Rd fingerprint/man/sim.Rd fingerprint/man/rndfp.Rd fingerprint/INDEX sudo -u fink-bld [ENV] sh -c /tmp/fink.ANUqt /tmp/fink.vYuxy #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-fingerprint-r30-3.5.2-1/fingerprint/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R pushd .. /sw/build.build/cran-fingerprint-r30-3.5.2-1 /sw/build.build/cran-fingerprint-r30-3.5.2-1/fingerprint if [[ 3.0 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes fingerprint else $BIN_R --verbose CMD build --no-vignettes fingerprint fi * checking for file 'fingerprint/DESCRIPTION' ... OK * preparing 'fingerprint': * checking DESCRIPTION meta-information ... OK * cleaning src * checking whether 'INDEX' is up-to-date ... NO * use '--force' to remove the existing 'INDEX' * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building 'fingerprint_3.5.2.tar.gz' /bin/rm -rf /sw/build.build/root-cran-fingerprint-r30-3.5.2-1 /bin/mkdir -p /sw/build.build/root-cran-fingerprint-r30-3.5.2-1/sw /bin/mkdir -p /sw/build.build/root-cran-fingerprint-r30-3.5.2-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-fingerprint-r30-3.5.2-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.oKyNt /tmp/fink.QOzzL #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R mkdir -p /sw/build.build/root-cran-fingerprint-r30-3.5.2-1/sw/lib/R/3.0/site-library pushd /sw/build.build/cran-fingerprint-r30-3.5.2-1/fingerprint/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-fingerprint-r30-3.5.2-1/sw/lib/R/3.0/site-library fingerprint /sw/build.build/cran-fingerprint-r30-3.5.2-1 /sw/build.build/cran-fingerprint-r30-3.5.2-1/fingerprint * installing *source* package 'fingerprint' ... ** package 'fingerprint' successfully unpacked and MD5 sums checked ** libs flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c fpdistance.c -o fpdistance.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c readfps.c -o readfps.o flag-sort -r gcc -ffor-scope -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib -o fingerprint.dylib fpdistance.o readfps.o -L/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation installing to /sw/build.build/root-cran-fingerprint-r30-3.5.2-1/sw/lib/R/3.0/site-library/fingerprint/libs ** R ** inst ** preparing package for lazy loading Creating a generic function for 'xor' from package 'base' in package 'fingerprint' ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (fingerprint) install_name_tool -id /sw/lib/R/3.0/site-library/fingerprint/libs/fingerprint.dylib /sw/build.build/root-cran-fingerprint-r30-3.5.2-1/sw/lib/R/3.0/site-library/fingerprint/libs/fingerprint.dylib sudo -u fink-bld [ENV] sh -c /tmp/fink.f6BfX /bin/rm -f /sw/build.build/root-cran-fingerprint-r30-3.5.2-1/sw/info/dir /sw/build.build/root-cran-fingerprint-r30-3.5.2-1/sw/info/dir.old /sw/build.build/root-cran-fingerprint-r30-3.5.2-1/sw/share/info/dir /sw/build.build/root-cran-fingerprint-r30-3.5.2-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-fingerprint-r30-3.5.2-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-fingerprint-r30' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-fingerprint-r30_3.5.2-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-fingerprint-r30-3.5.2-1 (Reading database ... 7414 files and directories currently installed.) Removing fink-buildlock-cran-fingerprint-r30-3.5.2-1 ...