printf '
' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-flexclust-r31 2>&1
The package 'cran-flexclust-r31' will be built without being installed.
Reading build dependency for cran-flexclust-r31-1.3-4-1...
Reading dependency for cran-flexclust-r31-1.3-4-1...
Reading build conflict for cran-flexclust-r31-1.3-4-1...
The package 'r-base31-dev' will be installed.
Reading dependency for r-base31-dev-3.1.1-2...
Reading runtime dependency for r-base31-dev-3.1.1-2...
The package 'r-base31' will be installed.
Reading dependency for r-base31-3.1.1-2...
Reading runtime dependency for r-base31-3.1.1-2...
The package 'cran-lattice-r31' will be installed.
Reading dependency for cran-lattice-r31-0.20-29-2...
Reading runtime dependency for cran-lattice-r31-0.20-29-2...
The package 'cran-modeltools-r31' will be installed.
Reading dependency for cran-modeltools-r31-0.2-21-1...
Reading runtime dependency for cran-modeltools-r31-0.2-21-1...
The package 'r-base31-shlibs' will be installed.
Reading dependency for r-base31-shlibs-3.1.1-2...
Reading runtime dependency for r-base31-shlibs-3.1.1-2...
The following package will be rebuilt:
cran-flexclust-r31
The following 5 additional packages will be installed:
cran-lattice-r31 cran-modeltools-r31 r-base31 r-base31-dev r-base31-shlibs
Do you want to continue? [Y/n] (assuming default)
Reading buildlock packages...
All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base31_3.1.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base31-shlibs_3.1.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base31-dev_3.1.1-2_darwin-x86_64.deb
Selecting previously deselected package r-base31.
(Reading database ... 7384 files and directories currently installed.)
Unpacking r-base31 (from .../r-base31_3.1.1-2_darwin-x86_64.deb) ...
Selecting previously deselected package r-base31-shlibs.
Unpacking r-base31-shlibs (from .../r-base31-shlibs_3.1.1-2_darwin-x86_64.deb) ...
Selecting previously deselected package r-base31-dev.
dpkg: considering removing r-base30-dev in favour of r-base31-dev ...
dpkg: yes, will remove r-base30-dev in favour of r-base31-dev.
Unpacking r-base31-dev (from .../r-base31-dev_3.1.1-2_darwin-x86_64.deb) ...
Setting up r-base31-shlibs (3.1.1-2) ...
Setting up r-base31-dev (3.1.1-2) ...
Setting up r-base31 (3.1.1-2) ...
Reading buildlock packages...
All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/debs/cran-lattice-r31_0.20-29-2_darwin-x86_64.deb
Selecting previously deselected package cran-lattice-r31.
(Reading database ... 9302 files and directories currently installed.)
Unpacking cran-lattice-r31 (from .../cran-lattice-r31_0.20-29-2_darwin-x86_64.deb) ...
Setting up cran-lattice-r31 (0.20-29-2) ...
Reading buildlock packages...
All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/debs/cran-modeltools-r31_0.2-21-1_darwin-x86_64.deb
Selecting previously deselected package cran-modeltools-r31.
(Reading database ... 9359 files and directories currently installed.)
Unpacking cran-modeltools-r31 (from .../cran-modeltools-r31_0.2-21-1_darwin-x86_64.deb) ...
Setting up cran-modeltools-r31 (0.2-21-1) ...
Setting runtime build-lock...
dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-flexclust-r31-1.3-4-1 /sw/build.build
dpkg-deb: building package `fink-buildlock-cran-flexclust-r31-1.3-4-1' in `/sw/build.build/fink-buildlock-cran-flexclust-r31-1.3-4-1_2014.07.30-20.43.04_darwin-x86_64.deb'.
Installing build-lock package...
/sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-flexclust-r31-1.3-4-1_2014.07.30-20.43.04_darwin-x86_64.deb
Selecting previously deselected package fink-buildlock-cran-flexclust-r31-1.3-4-1.
(Reading database ... 9383 files and directories currently installed.)
Unpacking fink-buildlock-cran-flexclust-r31-1.3-4-1 (from .../fink-buildlock-cran-flexclust-r31-1.3-4-1_2014.07.30-20.43.04_darwin-x86_64.deb) ...
Setting up fink-buildlock-cran-flexclust-r31-1.3-4-1 (2014.07.30-20.43.04) ...
sudo -u fink-bld [ENV] sh -c /tmp/fink.gGTTU
env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/flexclust_1.3-4.tar.gz
flexclust/
flexclust/MD5
flexclust/tests/
flexclust/tests/weights.R
flexclust/tests/plots.R
flexclust/tests/grouping.R
flexclust/tests/disttests.R
flexclust/tests/boot.R
flexclust/src/
flexclust/src/index.c
flexclust/src/cclust.c
flexclust/man/
flexclust/man/volunteers.Rd
flexclust/man/stripes.Rd
flexclust/man/stepFlexclust.Rd
flexclust/man/shadowStars.Rd
flexclust/man/shadow.Rd
flexclust/man/randomTour.Rd
flexclust/man/randIndex.Rd
flexclust/man/qtclust.Rd
flexclust/man/propBarchart.Rd
flexclust/man/projAxes.Rd
flexclust/man/priceFeature.Rd
flexclust/man/predict-methods.Rd
flexclust/man/plot-methods.Rd
flexclust/man/parameters.Rd
flexclust/man/pairs.Rd
flexclust/man/nutrient.Rd
flexclust/man/milk.Rd
flexclust/man/kcca2df.Rd
flexclust/man/kcca.Rd
flexclust/man/info.Rd
flexclust/man/image-methods.Rd
flexclust/man/flxColors.Rd
flexclust/man/flexclustControl-class.Rd
flexclust/man/distances.Rd
flexclust/man/dist2.Rd
flexclust/man/dentitio.Rd
flexclust/man/conversion.Rd
flexclust/man/clusterSim.Rd
flexclust/man/cclust.Rd
flexclust/man/bwplot-methods.Rd
flexclust/man/bundestag.Rd
flexclust/man/bootFlexclust.Rd
flexclust/man/birth.Rd
flexclust/man/barplot-methods.Rd
flexclust/man/auto.Rd
flexclust/man/achieve.Rd
flexclust/man/Nclus.Rd
flexclust/inst/
flexclust/inst/CITATION
flexclust/data/
flexclust/data/volunteers.RData
flexclust/data/nutrient.txt.gz
flexclust/data/milk.txt.gz
flexclust/data/dentitio.txt.gz
flexclust/data/btw2009.RData
flexclust/data/btw2005.RData
flexclust/data/btw2002.RData
flexclust/data/birth.txt.gz
flexclust/data/auto.RData
flexclust/data/achieve.txt.gz
flexclust/data/Nclus.RData
flexclust/R/
flexclust/R/utils.R
flexclust/R/tour.R
flexclust/R/stripes.R
flexclust/R/stepflexclust.R
flexclust/R/shadow.R
flexclust/R/randIndex.R
flexclust/R/qtclust.R
flexclust/R/projAxes.R
flexclust/R/pricefeat.R
flexclust/R/predict.R
flexclust/R/plot.R
flexclust/R/kcca.R
flexclust/R/info.R
flexclust/R/grouping.R
flexclust/R/family.R
flexclust/R/distances.R
flexclust/R/conversion.R
flexclust/R/cclust.R
flexclust/R/bundestag.R
flexclust/R/boxplot.R
flexclust/R/bootstrap.R
flexclust/R/barplot.R
flexclust/R/AAA-classes.R
flexclust/NEWS
flexclust/NAMESPACE
flexclust/DESCRIPTION
sudo -u fink-bld [ENV] sh -c /tmp/fink.xWa_w
/tmp/fink.MXwOY
#!/bin/bash -ev
export TMPDIR=/sw/build.build/cran-flexclust-r31-1.3-4-1/flexclust/tmp
BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R
pushd ..
/sw/build.build/cran-flexclust-r31-1.3-4-1 /sw/build.build/cran-flexclust-r31-1.3-4-1/flexclust
if [[ 3.1 > 2.15 ]]; then
$BIN_R --verbose CMD build --no-build-vignettes flexclust
else
$BIN_R --verbose CMD build --no-vignettes flexclust
fi
* checking for file 'flexclust/DESCRIPTION' ... OK
* preparing 'flexclust':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* looking to see if a 'data/datalist' file should be added
* building 'flexclust_1.3-4.tar.gz'
/bin/rm -rf /sw/build.build/root-cran-flexclust-r31-1.3-4-1
/bin/mkdir -p /sw/build.build/root-cran-flexclust-r31-1.3-4-1/sw
/bin/mkdir -p /sw/build.build/root-cran-flexclust-r31-1.3-4-1/DEBIAN
/usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-flexclust-r31-1.3-4-1
sudo -u fink-bld [ENV] sh -c /tmp/fink.yzE6H
/tmp/fink.YWalz
#!/bin/sh -ev
BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R
mkdir -p /sw/build.build/root-cran-flexclust-r31-1.3-4-1/sw/lib/R/3.1/site-library
pushd /sw/build.build/cran-flexclust-r31-1.3-4-1/flexclust/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-flexclust-r31-1.3-4-1/sw/lib/R/3.1/site-library flexclust
/sw/build.build/cran-flexclust-r31-1.3-4-1 /sw/build.build/cran-flexclust-r31-1.3-4-1/flexclust
* installing *source* package 'flexclust' ...
** package 'flexclust' successfully unpacked and MD5 sums checked
** libs
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c cclust.c -o cclust.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c index.c -o index.o
flag-sort -r gcc -ffor-scope -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib -o flexclust.dylib cclust.o index.o -L/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation
installing to /sw/build.build/root-cran-flexclust-r31-1.3-4-1/sw/lib/R/3.1/site-library/flexclust/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'barplot' from package 'graphics' in package 'flexclust'
Creating a generic function for 'barchart' from package 'lattice' in package 'flexclust'
Creating a generic function for 'boxplot' from package 'graphics' in package 'flexclust'
Creating a generic function for 'densityplot' from package 'lattice' in package 'flexclust'
Creating a generic function for 'bwplot' from package 'lattice' in package 'flexclust'
Creating a generic function for 'predict' from package 'stats' in package 'flexclust'
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (flexclust)
install_name_tool -id /sw/lib/R/3.1/site-library/flexclust/libs/flexclust.dylib /sw/build.build/root-cran-flexclust-r31-1.3-4-1/sw/lib/R/3.1/site-library/flexclust/libs/flexclust.dylib
sudo -u fink-bld [ENV] sh -c /tmp/fink.4rtR9
/bin/rm -f /sw/build.build/root-cran-flexclust-r31-1.3-4-1/sw/info/dir /sw/build.build/root-cran-flexclust-r31-1.3-4-1/sw/info/dir.old /sw/build.build/root-cran-flexclust-r31-1.3-4-1/sw/share/info/dir /sw/build.build/root-cran-flexclust-r31-1.3-4-1/sw/share/info/dir.old
Reverting ownership of install dir to root
Writing control file...
Creating shlibs files...
Writing md5sums file...
env LANG=C LC_ALL=C dpkg-deb -b root-cran-flexclust-r31-1.3-4-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods
dpkg-deb: building package `cran-flexclust-r31' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-flexclust-r31_1.3-4-1_darwin-x86_64.deb'.
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-cran-flexclust-r31-1.3-4-1
(Reading database ... 9384 files and directories currently installed.)
Removing fink-buildlock-cran-flexclust-r31-1.3-4-1 ...