printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-glm2-r31 2>&1 The package 'cran-glm2-r31' will be built without being installed. Reading build dependency for cran-glm2-r31-1.1.1-1... Reading dependency for cran-glm2-r31-1.1.1-1... Reading build conflict for cran-glm2-r31-1.1.1-1... The package 'r-base31-dev' will be installed. Reading dependency for r-base31-dev-3.1.0-4... Reading runtime dependency for r-base31-dev-3.1.0-4... The package 'r-base31' will be installed. Reading dependency for r-base31-3.1.0-4... Reading runtime dependency for r-base31-3.1.0-4... The package 'r-base31-shlibs' will be installed. Reading dependency for r-base31-shlibs-3.1.0-4... Reading runtime dependency for r-base31-shlibs-3.1.0-4... The following package will be rebuilt: cran-glm2-r31 The following 3 additional packages will be installed: r-base31 r-base31-dev r-base31-shlibs Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/glm2_1.1.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 15369 100 15369 0 0 50154 0 --:--:-- --:--:-- --:--:-- 50225 Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base31_3.1.0-4_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base31-shlibs_3.1.0-4_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base31-dev_3.1.0-4_darwin-x86_64.deb Selecting previously deselected package r-base31. (Reading database ... 7347 files and directories currently installed.) Unpacking r-base31 (from .../r-base31_3.1.0-4_darwin-x86_64.deb) ... Selecting previously deselected package r-base31-shlibs. Unpacking r-base31-shlibs (from .../r-base31-shlibs_3.1.0-4_darwin-x86_64.deb) ... Selecting previously deselected package r-base31-dev. dpkg: considering removing r-base30-dev in favour of r-base31-dev ... dpkg: yes, will remove r-base30-dev in favour of r-base31-dev. Unpacking r-base31-dev (from .../r-base31-dev_3.1.0-4_darwin-x86_64.deb) ... Setting up r-base31-shlibs (3.1.0-4) ... Setting up r-base31-dev (3.1.0-4) ... Setting up r-base31 (3.1.0-4) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-glm2-r31-1.1.1-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-glm2-r31-1.1.1-1' in `/sw/build.build/fink-buildlock-cran-glm2-r31-1.1.1-1_2014.07.27-00.08.56_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-glm2-r31-1.1.1-1_2014.07.27-00.08.56_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-glm2-r31-1.1.1-1. (Reading database ... 9265 files and directories currently installed.) Unpacking fink-buildlock-cran-glm2-r31-1.1.1-1 (from .../fink-buildlock-cran-glm2-r31-1.1.1-1_2014.07.27-00.08.56_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-glm2-r31-1.1.1-1 (2014.07.27-00.08.56) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.m5lrR env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/glm2_1.1.1.tar.gz glm2/ glm2/MD5 glm2/R/ glm2/R/glm2.R glm2/R/glm2-internal.R glm2/R/glm.fit2.R glm2/NAMESPACE glm2/man/ glm2/man/heart.Rd glm2/man/glm2.Rd glm2/man/glm2-package.Rd glm2/man/glm.fit2.Rd glm2/man/crabs.Rd glm2/DESCRIPTION glm2/data/ glm2/data/heart.rda glm2/data/crabs.rda sudo -u fink-bld [ENV] sh -c /tmp/fink.DLYy1 /tmp/fink.7WNw0 #!/bin/sh -ev export TMPDIR=/sw/build.build/cran-glm2-r31-1.1.1-1/glm2/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R pushd .. /sw/build.build/cran-glm2-r31-1.1.1-1 /sw/build.build/cran-glm2-r31-1.1.1-1/glm2 if [[ 3.1 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes glm2 else $BIN_R --verbose CMD build --no-vignettes glm2 fi * checking for file 'glm2/DESCRIPTION' ... OK * preparing 'glm2': * checking DESCRIPTION meta-information ... OK * checking for LF line-endings in source and make files * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added * building 'glm2_1.1.1.tar.gz' /bin/rm -rf /sw/build.build/root-cran-glm2-r31-1.1.1-1 /bin/mkdir -p /sw/build.build/root-cran-glm2-r31-1.1.1-1/sw /bin/mkdir -p /sw/build.build/root-cran-glm2-r31-1.1.1-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-glm2-r31-1.1.1-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.x56yl /tmp/fink.Amgwi #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R mkdir -p /sw/build.build/root-cran-glm2-r31-1.1.1-1/sw/lib/R/3.1/site-library pushd /sw/build.build/cran-glm2-r31-1.1.1-1/glm2/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-glm2-r31-1.1.1-1/sw/lib/R/3.1/site-library glm2 /sw/build.build/cran-glm2-r31-1.1.1-1 /sw/build.build/cran-glm2-r31-1.1.1-1/glm2 * installing *source* package 'glm2' ... ** package 'glm2' successfully unpacked and MD5 sums checked ** R ** data ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (glm2) sudo -u fink-bld [ENV] sh -c /tmp/fink.ggHYj /bin/rm -f /sw/build.build/root-cran-glm2-r31-1.1.1-1/sw/info/dir /sw/build.build/root-cran-glm2-r31-1.1.1-1/sw/info/dir.old /sw/build.build/root-cran-glm2-r31-1.1.1-1/sw/share/info/dir /sw/build.build/root-cran-glm2-r31-1.1.1-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-glm2-r31-1.1.1-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-glm2-r31' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-glm2-r31_1.1.1-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-glm2-r31-1.1.1-1 (Reading database ... 9266 files and directories currently installed.) Removing fink-buildlock-cran-glm2-r31-1.1.1-1 ...