printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-gsl-r215 2>&1 The package 'cran-gsl-r215' will be built without being installed. Reading build dependency for cran-gsl-r215-1.9-10-1... Reading dependency for cran-gsl-r215-1.9-10-1... Reading build conflict for cran-gsl-r215-1.9-10-1... The package 'r-base215-dev' will be installed. Reading dependency for r-base215-dev-2.15.3-112... Reading runtime dependency for r-base215-dev-2.15.3-112... The package 'gsl' will be installed. Reading dependency for gsl-1.16-1... Reading runtime dependency for gsl-1.16-1... The package 'libgettext8-dev' will be installed. Reading dependency for libgettext8-dev-0.18.3.1-2... Reading runtime dependency for libgettext8-dev-0.18.3.1-2... The package 'r-base215' will be installed. Reading dependency for r-base215-2.15.3-112... Reading runtime dependency for r-base215-2.15.3-112... The package 'gsl-shlibs' will be installed. Reading dependency for gsl-shlibs-1.16-1... Reading runtime dependency for gsl-shlibs-1.16-1... The package 'r-base215-shlibs' will be installed. Reading dependency for r-base215-shlibs-2.15.3-112... Reading runtime dependency for r-base215-shlibs-2.15.3-112... The package 'gettext-bin' will be installed. Reading dependency for gettext-bin-0.18.3.1-2... Reading runtime dependency for gettext-bin-0.18.3.1-2... The package 'flag-sort' will be installed. Reading dependency for flag-sort-0.5-1... Reading runtime dependency for flag-sort-0.5-1... The package 'cairo-shlibs' will be installed. Reading dependency for cairo-shlibs-1.12.14-1... Reading runtime dependency for cairo-shlibs-1.12.14-1... The package 'gcc49-shlibs' will be installed. Reading dependency for gcc49-shlibs-4.9.1-1000... Reading runtime dependency for gcc49-shlibs-4.9.1-1000... The package 'glib2-shlibs' will be installed. Reading dependency for glib2-shlibs-2.22.4-8... Reading runtime dependency for glib2-shlibs-2.22.4-8... The package 'libicu48-shlibs' will be installed. Reading dependency for libicu48-shlibs-4.8.1.1-2... Reading runtime dependency for libicu48-shlibs-4.8.1.1-2... The package 'libjpeg9-shlibs' will be installed. Reading dependency for libjpeg9-shlibs-9a-1... Reading runtime dependency for libjpeg9-shlibs-9a-1... The package 'liblzma5-shlibs' will be installed. Reading dependency for liblzma5-shlibs-5.0.5-2... Reading runtime dependency for liblzma5-shlibs-5.0.5-2... The package 'libpng16-shlibs' will be installed. Reading dependency for libpng16-shlibs-1.6.12-1... Reading runtime dependency for libpng16-shlibs-1.6.12-1... The package 'libtiff5-shlibs' will be installed. Reading dependency for libtiff5-shlibs-4.0.3-5... Reading runtime dependency for libtiff5-shlibs-4.0.3-5... The package 'pango1-xft2-ft219-shlibs' will be installed. Reading dependency for pango1-xft2-ft219-shlibs-1.24.5-9... Reading runtime dependency for pango1-xft2-ft219-shlibs-1.24.5-9... The package 'libpcre1-shlibs' will be installed. Reading dependency for libpcre1-shlibs-8.35-1... Reading runtime dependency for libpcre1-shlibs-8.35-1... The package 'readline6-shlibs' will be installed. Reading dependency for readline6-shlibs-6.3.6-1... Reading runtime dependency for readline6-shlibs-6.3.6-1... The package 'tcltk' will be installed. Reading dependency for tcltk-8.6.1-104... Reading runtime dependency for tcltk-8.6.1-104... The package 'fontconfig2-shlibs' will be installed. Reading dependency for fontconfig2-shlibs-2.10.2-1... Reading runtime dependency for fontconfig2-shlibs-2.10.2-1... The package 'freetype219-shlibs' will be installed. Reading dependency for freetype219-shlibs-2.4.12-1... Reading runtime dependency for freetype219-shlibs-2.4.12-1... The package 'pixman-shlibs' will be installed. Reading dependency for pixman-shlibs-0.32.4-1... Reading runtime dependency for pixman-shlibs-0.32.4-1... The package 'xdg-base' will be installed. Reading dependency for xdg-base-0.8-2... Reading runtime dependency for xdg-base-0.8-2... The package 'libjbig-shlibs' will be installed. Reading dependency for libjbig-shlibs-2.0-1... Reading runtime dependency for libjbig-shlibs-2.0-1... The package 'libthai-shlibs' will be installed. Reading dependency for libthai-shlibs-0.1.20-1... Reading runtime dependency for libthai-shlibs-0.1.20-1... The package 'xft2-shlibs' will be installed. Reading dependency for xft2-shlibs-2.2.0-3... Reading runtime dependency for xft2-shlibs-2.2.0-3... The package 'tcltk-shlibs' will be installed. Reading dependency for tcltk-shlibs-8.6.1-104... Reading runtime dependency for tcltk-shlibs-8.6.1-104... The package 'fontconfig-config' will be installed. Reading dependency for fontconfig-config-2.10.2-1... Reading runtime dependency for fontconfig-config-2.10.2-1... The package 'expat1-shlibs' will be installed. Reading dependency for expat1-shlibs-2.1.0-1... Reading runtime dependency for expat1-shlibs-2.1.0-1... The package 'libdatrie1-shlibs' will be installed. Reading dependency for libdatrie1-shlibs-0.2.8-2... Reading runtime dependency for libdatrie1-shlibs-0.2.8-2... The package 'libthai' will be installed. Reading dependency for libthai-0.1.20-1... Reading runtime dependency for libthai-0.1.20-1... The following package will be rebuilt: cran-gsl-r215 The following 32 additional packages will be installed: cairo-shlibs expat1-shlibs flag-sort fontconfig-config fontconfig2-shlibs freetype219-shlibs gcc49-shlibs gettext-bin glib2-shlibs gsl gsl-shlibs libdatrie1-shlibs libgettext8-dev libicu48-shlibs libjbig-shlibs libjpeg9-shlibs liblzma5-shlibs libpcre1-shlibs libpng16-shlibs libthai libthai-shlibs libtiff5-shlibs pango1-xft2-ft219-shlibs pixman-shlibs r-base215 r-base215-dev r-base215-shlibs readline6-shlibs tcltk tcltk-shlibs xdg-base xft2-shlibs Do you want to continue? [Y/n] (assuming default) Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/expat1-shlibs_2.1.0-1_darwin-x86_64.deb Selecting previously deselected package expat1-shlibs. (Reading database ... 4296 files and directories currently installed.) Unpacking expat1-shlibs (from .../expat1-shlibs_2.1.0-1_darwin-x86_64.deb) ... Setting up expat1-shlibs (2.1.0-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/flag-sort_0.5-1_darwin-x86_64.deb Selecting previously deselected package flag-sort. (Reading database ... 4301 files and directories currently installed.) Unpacking flag-sort (from .../flag-sort_0.5-1_darwin-x86_64.deb) ... Setting up flag-sort (0.5-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/freetype219-shlibs_2.4.12-1_darwin-x86_64.deb Selecting previously deselected package freetype219-shlibs. (Reading database ... 4302 files and directories currently installed.) Unpacking freetype219-shlibs (from .../freetype219-shlibs_2.4.12-1_darwin-x86_64.deb) ... Setting up freetype219-shlibs (2.4.12-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/gcc49-shlibs_4.9.1-1000_darwin-x86_64.deb Selecting previously deselected package gcc49-shlibs. (Reading database ... 4313 files and directories currently installed.) Unpacking gcc49-shlibs (from .../gcc49-shlibs_4.9.1-1000_darwin-x86_64.deb) ... Setting up gcc49-shlibs (4.9.1-1000) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/gsl_1.16-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/gsl-shlibs_1.16-1_darwin-x86_64.deb Selecting previously deselected package gsl. (Reading database ... 4358 files and directories currently installed.) Unpacking gsl (from .../gsl_1.16-1_darwin-x86_64.deb) ... Selecting previously deselected package gsl-shlibs. Unpacking gsl-shlibs (from .../gsl-shlibs_1.16-1_darwin-x86_64.deb) ... Setting up gsl-shlibs (1.16-1) ... Setting up gsl (1.16-1) ... Clearing dependency_libs of .la files being installed * gsl-ref: (gsl-ref). GNU Scientific Library - Reference install-info(/sw/share/info/gsl-ref.info): creating new section `Software libraries' Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libdatrie1-shlibs_0.2.8-2_darwin-x86_64.deb Selecting previously deselected package libdatrie1-shlibs. (Reading database ... 4608 files and directories currently installed.) Unpacking libdatrie1-shlibs (from .../libdatrie1-shlibs_0.2.8-2_darwin-x86_64.deb) ... Setting up libdatrie1-shlibs (0.2.8-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/libgettext8-dev_0.18.3.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/base/gettext-bin_0.18.3.1-2_darwin-x86_64.deb Selecting previously deselected package libgettext8-dev. (Reading database ... 4615 files and directories currently installed.) Unpacking libgettext8-dev (from .../libgettext8-dev_0.18.3.1-2_darwin-x86_64.deb) ... Selecting previously deselected package gettext-bin. Unpacking gettext-bin (from .../gettext-bin_0.18.3.1-2_darwin-x86_64.deb) ... Setting up gettext-bin (0.18.3.1-2) ... Setting up libgettext8-dev (0.18.3.1-2) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libicu48-shlibs_4.8.1.1-2_darwin-x86_64.deb Selecting previously deselected package libicu48-shlibs. 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Unpacking libjpeg9-shlibs (from .../libjpeg9-shlibs_9a-1_darwin-x86_64.deb) ... Setting up libjpeg9-shlibs (9a-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/utils/liblzma5-shlibs_5.0.5-2_darwin-x86_64.deb Selecting previously deselected package liblzma5-shlibs. (Reading database ... 4733 files and directories currently installed.) Unpacking liblzma5-shlibs (from .../liblzma5-shlibs_5.0.5-2_darwin-x86_64.deb) ... Setting up liblzma5-shlibs (5.0.5-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libpcre1-shlibs_8.35-1_darwin-x86_64.deb Selecting previously deselected package libpcre1-shlibs. (Reading database ... 4744 files and directories currently installed.) Unpacking libpcre1-shlibs (from .../libpcre1-shlibs_8.35-1_darwin-x86_64.deb) ... Setting up libpcre1-shlibs (8.35-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libpng16-shlibs_1.6.12-1_darwin-x86_64.deb Selecting previously deselected package libpng16-shlibs. (Reading database ... 4757 files and directories currently installed.) Unpacking libpng16-shlibs (from .../libpng16-shlibs_1.6.12-1_darwin-x86_64.deb) ... Setting up libpng16-shlibs (1.6.12-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libthai-shlibs_0.1.20-1_darwin-x86_64.deb /sw/fink/debs/libthai_0.1.20-1_darwin-x86_64.deb Selecting previously deselected package libthai-shlibs. (Reading database ... 4765 files and directories currently installed.) Unpacking libthai-shlibs (from .../libthai-shlibs_0.1.20-1_darwin-x86_64.deb) ... Selecting previously deselected package libthai. Unpacking libthai (from .../libthai_0.1.20-1_darwin-x86_64.deb) ... Setting up libthai (0.1.20-1) ... Setting up libthai-shlibs (0.1.20-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/libtiff5-shlibs_4.0.3-5_darwin-x86_64.deb Selecting previously deselected package libtiff5-shlibs. (Reading database ... 4780 files and directories currently installed.) Unpacking libtiff5-shlibs (from .../libtiff5-shlibs_4.0.3-5_darwin-x86_64.deb) ... Setting up libtiff5-shlibs (4.0.3-5) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/pixman-shlibs_0.32.4-1_darwin-x86_64.deb Selecting previously deselected package pixman-shlibs. (Reading database ... 4785 files and directories currently installed.) Unpacking pixman-shlibs (from .../pixman-shlibs_0.32.4-1_darwin-x86_64.deb) ... Setting up pixman-shlibs (0.32.4-1) ... Reading buildlock packages... 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Unpacking glib2-shlibs (from .../glib2-shlibs_2.22.4-8_darwin-x86_64.deb) ... Setting up glib2-shlibs (2.22.4-8) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/xft2-shlibs_2.2.0-3_darwin-x86_64.deb Selecting previously deselected package xft2-shlibs. (Reading database ... 5106 files and directories currently installed.) Unpacking xft2-shlibs (from .../xft2-shlibs_2.2.0-3_darwin-x86_64.deb) ... Setting up xft2-shlibs (2.2.0-3) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/cairo-shlibs_1.12.14-1_darwin-x86_64.deb Selecting previously deselected package cairo-shlibs. (Reading database ... 5115 files and directories currently installed.) Unpacking cairo-shlibs (from .../cairo-shlibs_1.12.14-1_darwin-x86_64.deb) ... Setting up cairo-shlibs (1.12.14-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/gnome/pango1-xft2-ft219-shlibs_1.24.5-9_darwin-x86_64.deb Selecting previously deselected package pango1-xft2-ft219-shlibs. (Reading database ... 5134 files and directories currently installed.) Unpacking pango1-xft2-ft219-shlibs (from .../pango1-xft2-ft219-shlibs_1.24.5-9_darwin-x86_64.deb) ... Setting up pango1-xft2-ft219-shlibs (1.24.5-9) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/tcltk_8.6.1-104_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/tcltk-shlibs_8.6.1-104_darwin-x86_64.deb Selecting previously deselected package tcltk. (Reading database ... 5178 files and directories currently installed.) Unpacking tcltk (from .../tcltk_8.6.1-104_darwin-x86_64.deb) ... Selecting previously deselected package tcltk-shlibs. Unpacking tcltk-shlibs (from .../tcltk-shlibs_8.6.1-104_darwin-x86_64.deb) ... Setting up tcltk-shlibs (8.6.1-104) ... Setting up tcltk (8.6.1-104) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base215_2.15.3-112_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base215-shlibs_2.15.3-112_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base215-dev_2.15.3-112_darwin-x86_64.deb Selecting previously deselected package r-base215. (Reading database ... 5653 files and directories currently installed.) Unpacking r-base215 (from .../r-base215_2.15.3-112_darwin-x86_64.deb) ... Selecting previously deselected package r-base215-shlibs. Unpacking r-base215-shlibs (from .../r-base215-shlibs_2.15.3-112_darwin-x86_64.deb) ... Selecting previously deselected package r-base215-dev. Unpacking r-base215-dev (from .../r-base215-dev_2.15.3-112_darwin-x86_64.deb) ... Setting up r-base215-shlibs (2.15.3-112) ... Setting up r-base215-dev (2.15.3-112) ... Setting up r-base215 (2.15.3-112) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-gsl-r215-1.9-10-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-gsl-r215-1.9-10-1' in `/sw/build.build/fink-buildlock-cran-gsl-r215-1.9-10-1_2014.07.27-12.29.27_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-gsl-r215-1.9-10-1_2014.07.27-12.29.27_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-gsl-r215-1.9-10-1. (Reading database ... 7806 files and directories currently installed.) Unpacking fink-buildlock-cran-gsl-r215-1.9-10-1 (from .../fink-buildlock-cran-gsl-r215-1.9-10-1_2014.07.27-12.29.27_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-gsl-r215-1.9-10-1 (2014.07.27-12.29.27) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.GhcvG env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/gsl_1.9-10.tar.gz gsl/ gsl/inst/ gsl/inst/CITATION gsl/inst/doc/ gsl/inst/doc/gslpaper.Rnw gsl/inst/doc/gslpaper.pdf gsl/inst/doc/gslpaper.R gsl/configure.ac gsl/src/ gsl/src/hyperg.c gsl/src/qrng.c gsl/src/gamma.c gsl/src/poly.c gsl/src/pow_int.c gsl/src/bessel.c gsl/src/coupling.c gsl/src/debye.c gsl/src/dawson.c gsl/src/lambert.c gsl/src/transport.c gsl/src/rng.c gsl/src/vector.c gsl/src/laguerre.c gsl/src/synchrotron.c gsl/src/vector.h gsl/src/error.c gsl/src/clausen.c gsl/src/elljac.c gsl/src/Makevars.in gsl/src/ellint.c gsl/src/psi.c gsl/src/gegenbauer.c gsl/src/fermi_dirac.c gsl/src/coulomb.c gsl/src/Makevars.win gsl/src/legendre.c gsl/src/airy.c gsl/src/expint.c gsl/src/multimin.c gsl/src/log.c gsl/src/trig.c gsl/src/zeta.c gsl/src/dilog.c gsl/NAMESPACE gsl/INSTALL gsl/R/ gsl/R/trig.R gsl/R/poly.R gsl/R/pow_int.R gsl/R/coulomb.R gsl/R/aaa.R gsl/R/rng.R gsl/R/elljac.R gsl/R/hyperg.R gsl/R/lambert.R gsl/R/laguerre.R gsl/R/psi.R gsl/R/debye.R gsl/R/airy.R gsl/R/zeta.R gsl/R/log.R gsl/R/expint.R gsl/R/fermi_dirac.R gsl/R/bessel.R gsl/R/error.R gsl/R/multimin.R gsl/R/transport.R gsl/R/clausen.R gsl/R/dilog.R gsl/R/synchrotron.R gsl/R/qrng.R gsl/R/gegenbauer.R gsl/R/legendre.R gsl/R/ellint.R gsl/R/gamma.R gsl/R/dawson.R gsl/R/zzz.R gsl/R/coupling.R gsl/vignettes/ gsl/vignettes/gslpaper.Rnw gsl/vignettes/gsl.bib gsl/MD5 gsl/build/ gsl/build/vignette.rds gsl/DESCRIPTION gsl/configure gsl/man/ gsl/man/Error.Rd gsl/man/Pow_int.Rd gsl/man/Misc.Rd gsl/man/Expint.Rd gsl/man/Debye.Rd gsl/man/Poly.Rd gsl/man/Qrng.Rd gsl/man/Synchrotron.Rd gsl/man/Fermi-Dirac.Rd gsl/man/Lambert.Rd gsl/man/Zeta.Rd gsl/man/Log.Rd gsl/man/Dilog.Rd gsl/man/Gegenbauer.Rd gsl/man/Transport.Rd gsl/man/Gamma.Rd gsl/man/Multimin.Rd gsl/man/Rng.Rd gsl/man/Laguerre.Rd gsl/man/gsl-package.Rd gsl/man/Trig.Rd gsl/man/Hyperg.Rd gsl/man/Coulomb.Rd gsl/man/Airy.Rd gsl/man/Ellint.Rd gsl/man/Dawson.Rd gsl/man/Coupling.Rd gsl/man/Legendre.Rd gsl/man/Bessel.Rd gsl/man/Psi.Rd gsl/man/Clausen.Rd gsl/man/Elljac.Rd gsl/cleanup sudo -u fink-bld [ENV] sh -c /tmp/fink.ZtDqw /tmp/fink.1FToe #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-gsl-r215-1.9-10-1/gsl/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R pushd .. /sw/build.build/cran-gsl-r215-1.9-10-1 /sw/build.build/cran-gsl-r215-1.9-10-1/gsl if [[ 2.15 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes gsl else $BIN_R --verbose CMD build --no-vignettes gsl fi * checking for file 'gsl/DESCRIPTION' ... OK * preparing 'gsl': * checking DESCRIPTION meta-information ... OK * cleaning src * running 'cleanup' * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building 'gsl_1.9-10.tar.gz' /bin/rm -rf /sw/build.build/root-cran-gsl-r215-1.9-10-1 /bin/mkdir -p /sw/build.build/root-cran-gsl-r215-1.9-10-1/sw /bin/mkdir -p /sw/build.build/root-cran-gsl-r215-1.9-10-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-gsl-r215-1.9-10-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.SawST /tmp/fink.gLsc9 #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R mkdir -p /sw/build.build/root-cran-gsl-r215-1.9-10-1/sw/lib/R/2.15/site-library pushd /sw/build.build/cran-gsl-r215-1.9-10-1/gsl/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-gsl-r215-1.9-10-1/sw/lib/R/2.15/site-library gsl /sw/build.build/cran-gsl-r215-1.9-10-1 /sw/build.build/cran-gsl-r215-1.9-10-1/gsl * installing *source* package 'gsl' ... ** package 'gsl' successfully unpacked and MD5 sums checked checking for gsl-config... /sw/bin/gsl-config checking if GSL version >= 1.12... checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed yes configure: creating ./config.status config.status: creating src/Makevars ** libs flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c airy.c -o airy.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c bessel.c -o bessel.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c clausen.c -o clausen.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c coulomb.c -o coulomb.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c coupling.c -o coupling.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c dawson.c -o dawson.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c debye.c -o debye.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c dilog.c -o dilog.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c ellint.c -o ellint.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c elljac.c -o elljac.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c error.c -o error.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c expint.c -o expint.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c fermi_dirac.c -o fermi_dirac.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c gamma.c -o gamma.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c gegenbauer.c -o gegenbauer.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c hyperg.c -o hyperg.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c laguerre.c -o laguerre.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c lambert.c -o lambert.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c legendre.c -o legendre.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c log.c -o log.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c multimin.c -o multimin.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c poly.c -o poly.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c pow_int.c -o pow_int.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c psi.c -o psi.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c qrng.c -o qrng.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c rng.c -o rng.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c synchrotron.c -o synchrotron.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c transport.c -o transport.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c trig.c -o trig.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c vector.c -o vector.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -I. -I/sw/include -fPIC -g -O3 -c zeta.c -o zeta.o flag-sort -r gcc -ffor-scope -dynamiclib -Wl,-headerpad_max_install_names -single_module -multiply_defined suppress -L/sw/lib -o gsl.dylib airy.o bessel.o clausen.o coulomb.o coupling.o dawson.o debye.o dilog.o ellint.o elljac.o error.o expint.o fermi_dirac.o gamma.o gegenbauer.o hyperg.o laguerre.o lambert.o legendre.o log.o multimin.o poly.o pow_int.o psi.o qrng.o rng.o synchrotron.o transport.o trig.o vector.o zeta.o -L/sw/lib -lgsl -lgslcblas -L/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation installing to /sw/build.build/root-cran-gsl-r215-1.9-10-1/sw/lib/R/2.15/site-library/gsl/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes 'gslpaper.Rnw' ** testing if installed package can be loaded * DONE (gsl) install_name_tool -id /sw/lib/R/2.15/site-library/gsl/libs/gsl.dylib /sw/build.build/root-cran-gsl-r215-1.9-10-1/sw/lib/R/2.15/site-library/gsl/libs/gsl.dylib sudo -u fink-bld [ENV] sh -c /tmp/fink.mxuwy /bin/rm -f /sw/build.build/root-cran-gsl-r215-1.9-10-1/sw/info/dir /sw/build.build/root-cran-gsl-r215-1.9-10-1/sw/info/dir.old /sw/build.build/root-cran-gsl-r215-1.9-10-1/sw/share/info/dir /sw/build.build/root-cran-gsl-r215-1.9-10-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-gsl-r215-1.9-10-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-gsl-r215' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-gsl-r215_1.9-10-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-gsl-r215-1.9-10-1 (Reading database ... 7807 files and directories currently installed.) Removing fink-buildlock-cran-gsl-r215-1.9-10-1 ...