printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-gtools-r31 2>&1 The package 'cran-gtools-r31' will be built without being installed. Reading build dependency for cran-gtools-r31-3.4.0-2... Reading dependency for cran-gtools-r31-3.4.0-2... Reading build conflict for cran-gtools-r31-3.4.0-2... The following package will be rebuilt: cran-gtools-r31 Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-gtools-r31-3.4.0-2 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-gtools-r31-3.4.0-2' in `/sw/build.build/fink-buildlock-cran-gtools-r31-3.4.0-2_2014.07.27-09.52.05_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-gtools-r31-3.4.0-2_2014.07.27-09.52.05_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-gtools-r31-3.4.0-2. (Reading database ... 7371 files and directories currently installed.) Unpacking fink-buildlock-cran-gtools-r31-3.4.0-2 (from .../fink-buildlock-cran-gtools-r31-3.4.0-2_2014.07.27-09.52.05_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-gtools-r31-3.4.0-2 (2014.07.27-09.52.05) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.OoYil env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/gtools_3.4.0.tar.gz gtools/ gtools/inst/ gtools/inst/NEWS gtools/inst/ChangeLog gtools/tests/ gtools/tests/test_mixedorder.R gtools/tests/test_binsearch.R gtools/src/ gtools/src/setTCPNoDelay.c gtools/src/Makevars.win gtools/NAMESPACE gtools/NEWS gtools/data/ gtools/data/ELISA.rda gtools/R/ gtools/R/logit.R gtools/R/mixedsort.R gtools/R/binsearch.R gtools/R/ASCIIfy.R gtools/R/oddeven.R gtools/R/defmacro.R gtools/R/quantcut.R gtools/R/combinations.R gtools/R/keywords.R gtools/R/dirichlet.R gtools/R/deprecated.R gtools/R/lastAdd.R gtools/R/invalid.R gtools/R/smartbind.R gtools/R/strmacro.R gtools/R/running.R gtools/R/addLast.R gtools/R/newVersionAvailable.R gtools/R/setTCPNoDelay.R gtools/R/foldchange.R gtools/R/defunct.R gtools/R/getDependencies.R gtools/R/RSCompat.S gtools/R/ask.R gtools/R/stars.pval.R gtools/R/permute.R gtools/R/scat.R gtools/R/clean_up_dependencies2.R gtools/R/checkRVersion.R gtools/MD5 gtools/DESCRIPTION gtools/ChangeLog gtools/man/ gtools/man/running.Rd gtools/man/gtools-deprecated.Rd gtools/man/ASCIIfy.Rd gtools/man/setTCPNoDelay.Rd gtools/man/ask.Rd gtools/man/defmacro.Rd gtools/man/getDependencies.Rd gtools/man/combinations.Rd gtools/man/smartbind.Rd gtools/man/gtools-defunct.Rd gtools/man/dirichlet.Rd gtools/man/stars.pval.Rd gtools/man/logit.Rd gtools/man/permute.Rd gtools/man/scat.Rd gtools/man/mixedsort.Rd gtools/man/binsearch.Rd gtools/man/oddeven.Rd gtools/man/quantcut.Rd gtools/man/lastAdd.Rd gtools/man/foldchange.Rd gtools/man/invalid.Rd gtools/man/checkRVersion.Rd gtools/man/ELISA.Rd gtools/man/keywords.Rd sudo -u fink-bld [ENV] sh -c /tmp/fink.hrbUg /tmp/fink.Rc5G_ #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-gtools-r31-3.4.0-2/gtools/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R pushd .. /sw/build.build/cran-gtools-r31-3.4.0-2 /sw/build.build/cran-gtools-r31-3.4.0-2/gtools if [[ 3.1 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes gtools else $BIN_R --verbose CMD build --no-vignettes gtools fi * checking for file 'gtools/DESCRIPTION' ... OK * preparing 'gtools': * checking DESCRIPTION meta-information ... OK * cleaning src * checking for LF line-endings in source and make files * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added * building 'gtools_3.4.0.tar.gz' /bin/rm -rf /sw/build.build/root-cran-gtools-r31-3.4.0-2 /bin/mkdir -p /sw/build.build/root-cran-gtools-r31-3.4.0-2/sw /bin/mkdir -p /sw/build.build/root-cran-gtools-r31-3.4.0-2/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-gtools-r31-3.4.0-2 sudo -u fink-bld [ENV] sh -c /tmp/fink.0ovLQ /tmp/fink.yJ2r4 #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R mkdir -p /sw/build.build/root-cran-gtools-r31-3.4.0-2/sw/lib/R/3.1/site-library pushd /sw/build.build/cran-gtools-r31-3.4.0-2/gtools/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-gtools-r31-3.4.0-2/sw/lib/R/3.1/site-library gtools /sw/build.build/cran-gtools-r31-3.4.0-2 /sw/build.build/cran-gtools-r31-3.4.0-2/gtools * installing *source* package 'gtools' ... ** package 'gtools' successfully unpacked and MD5 sums checked ** libs flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c setTCPNoDelay.c -o setTCPNoDelay.o flag-sort -r gcc -ffor-scope -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib -o gtools.dylib setTCPNoDelay.o -L/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation installing to /sw/build.build/root-cran-gtools-r31-3.4.0-2/sw/lib/R/3.1/site-library/gtools/libs ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (gtools) install_name_tool -id /sw/lib/R/3.1/site-library/gtools/libs/gtools.dylib /sw/build.build/root-cran-gtools-r31-3.4.0-2/sw/lib/R/3.1/site-library/gtools/libs/gtools.dylib sudo -u fink-bld [ENV] sh -c /tmp/fink.yMW27 /bin/rm -f /sw/build.build/root-cran-gtools-r31-3.4.0-2/sw/info/dir /sw/build.build/root-cran-gtools-r31-3.4.0-2/sw/info/dir.old /sw/build.build/root-cran-gtools-r31-3.4.0-2/sw/share/info/dir /sw/build.build/root-cran-gtools-r31-3.4.0-2/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-gtools-r31-3.4.0-2 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-gtools-r31' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-gtools-r31_3.4.0-2_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-gtools-r31-3.4.0-2 (Reading database ... 7372 files and directories currently installed.) Removing fink-buildlock-cran-gtools-r31-3.4.0-2 ...