printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-hmeasure-r31 2>&1 The package 'cran-hmeasure-r31' will be built without being installed. Reading build dependency for cran-hmeasure-r31-1.0-1... Reading dependency for cran-hmeasure-r31-1.0-1... Reading build conflict for cran-hmeasure-r31-1.0-1... The following package will be rebuilt: cran-hmeasure-r31 Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-hmeasure-r31-1.0-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-hmeasure-r31-1.0-1' in `/sw/build.build/fink-buildlock-cran-hmeasure-r31-1.0-1_2014.07.31-05.52.32_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-hmeasure-r31-1.0-1_2014.07.31-05.52.32_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-hmeasure-r31-1.0-1. (Reading database ... 7371 files and directories currently installed.) Unpacking fink-buildlock-cran-hmeasure-r31-1.0-1 (from .../fink-buildlock-cran-hmeasure-r31-1.0-1_2014.07.31-05.52.32_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-hmeasure-r31-1.0-1 (2014.07.31-05.52.32) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.199qb env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/hmeasure_1.0.tar.gz hmeasure/ hmeasure/MD5 hmeasure/inst/ hmeasure/inst/doc/ hmeasure/inst/doc/hmeasure.pdf hmeasure/inst/doc/hmeasure.Rnw hmeasure/man/ hmeasure/man/relabel.Rd hmeasure/man/misclassCounts.Rd hmeasure/man/HMeasure.Rd hmeasure/man/hmeasure-package.Rd hmeasure/man/summary.hmeasure.Rd hmeasure/man/plotROC.Rd hmeasure/DESCRIPTION hmeasure/R/ hmeasure/R/hmeasure_package_v5.R hmeasure/NAMESPACE hmeasure/vignettes/ hmeasure/vignettes/hmeasure-013.pdf hmeasure/vignettes/hmeasure-004.pdf hmeasure/vignettes/hmeasure-011.pdf hmeasure/vignettes/hmeasure-023.pdf hmeasure/vignettes/hmeasure-002.pdf hmeasure/vignettes/hmeasure.dvi hmeasure/vignettes/hmeasure-009.pdf hmeasure/vignettes/hmeasure-019.pdf hmeasure/vignettes/hmeasure_2107.pdf hmeasure/vignettes/hmeasure-007.pdf hmeasure/vignettes/hmeasure_2207.pdf hmeasure/vignettes/hmeasure-010.pdf hmeasure/vignettes/hmeasure-020.pdf hmeasure/vignettes/hmeasure-016.pdf hmeasure/vignettes/hmeasure-005.pdf hmeasure/vignettes/hmeasure-015.pdf hmeasure/vignettes/hmeasure-006.pdf hmeasure/vignettes/hmeasure-003.pdf hmeasure/vignettes/hmeasure-024.pdf hmeasure/vignettes/hmeasure-012.pdf hmeasure/vignettes/hmeasure-017.pdf hmeasure/vignettes/hmeasure.Rnw.backup hmeasure/vignettes/hmeasure-001.pdf hmeasure/vignettes/hmeasure-018.pdf hmeasure/vignettes/hmeasure.Rnw hmeasure/vignettes/hmeasure-008.pdf hmeasure/vignettes/hmeasure-022.pdf sudo -u fink-bld [ENV] sh -c /tmp/fink.dQQ_n /tmp/fink.UMxPT #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-hmeasure-r31-1.0-1/hmeasure/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R pushd .. /sw/build.build/cran-hmeasure-r31-1.0-1 /sw/build.build/cran-hmeasure-r31-1.0-1/hmeasure if [[ 3.1 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes hmeasure else $BIN_R --verbose CMD build --no-vignettes hmeasure fi * checking for file 'hmeasure/DESCRIPTION' ... OK * preparing 'hmeasure': * checking DESCRIPTION meta-information ... OK * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building 'hmeasure_1.0.tar.gz' /bin/rm -rf /sw/build.build/root-cran-hmeasure-r31-1.0-1 /bin/mkdir -p /sw/build.build/root-cran-hmeasure-r31-1.0-1/sw /bin/mkdir -p /sw/build.build/root-cran-hmeasure-r31-1.0-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-hmeasure-r31-1.0-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.9Czk0 /tmp/fink.3JwKt #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R mkdir -p /sw/build.build/root-cran-hmeasure-r31-1.0-1/sw/lib/R/3.1/site-library pushd /sw/build.build/cran-hmeasure-r31-1.0-1/hmeasure/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-hmeasure-r31-1.0-1/sw/lib/R/3.1/site-library hmeasure /sw/build.build/cran-hmeasure-r31-1.0-1 /sw/build.build/cran-hmeasure-r31-1.0-1/hmeasure * installing *source* package 'hmeasure' ... ** package 'hmeasure' successfully unpacked and MD5 sums checked ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes 'hmeasure.Rnw' ** testing if installed package can be loaded * DONE (hmeasure) sudo -u fink-bld [ENV] sh -c /tmp/fink.QE_wA /bin/rm -f /sw/build.build/root-cran-hmeasure-r31-1.0-1/sw/info/dir /sw/build.build/root-cran-hmeasure-r31-1.0-1/sw/info/dir.old /sw/build.build/root-cran-hmeasure-r31-1.0-1/sw/share/info/dir /sw/build.build/root-cran-hmeasure-r31-1.0-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-hmeasure-r31-1.0-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-hmeasure-r31' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-hmeasure-r31_1.0-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-hmeasure-r31-1.0-1 (Reading database ... 7372 files and directories currently installed.) Removing fink-buildlock-cran-hmeasure-r31-1.0-1 ...