printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-javagd-r31 2>&1 The package 'cran-javagd-r31' will be built without being installed. Reading build dependency for cran-javagd-r31-0.6-1-1... Reading dependency for cran-javagd-r31-0.6-1-1... Reading build conflict for cran-javagd-r31-0.6-1-1... The following package will be rebuilt: cran-javagd-r31 Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-javagd-r31-0.6-1-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-javagd-r31-0.6-1-1' in `/sw/build.build/fink-buildlock-cran-javagd-r31-0.6-1-1_2014.07.28-04.38.19_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-javagd-r31-0.6-1-1_2014.07.28-04.38.19_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-javagd-r31-0.6-1-1. (Reading database ... 7371 files and directories currently installed.) Unpacking fink-buildlock-cran-javagd-r31-0.6-1-1 (from .../fink-buildlock-cran-javagd-r31-0.6-1-1_2014.07.28-04.38.19_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-javagd-r31-0.6-1-1 (2014.07.28-04.38.19) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.4vfyG env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/JavaGD_0.6-1.tar.gz JavaGD/ JavaGD/MD5 JavaGD/src/ JavaGD/src/java/ JavaGD/src/java/JGDBufferedPanel.java JavaGD/src/java/GDContainer.java JavaGD/src/java/GDObject.java JavaGD/src/java/JavaGD.java JavaGD/src/java/LICENSE JavaGD/src/java/LocatorSync.java JavaGD/src/java/JGDPanel.java JavaGD/src/java/GDInterface.java JavaGD/src/java/Makefile JavaGD/src/java/GDCanvas.java JavaGD/src/java/XGDserver.java JavaGD/src/jvm-w32/ JavaGD/src/jvm-w32/WinRegistry.c JavaGD/src/jvm-w32/findjava.c JavaGD/src/jvm-w32/Makefile JavaGD/src/jvm-w32/jvm.def JavaGD/src/jvm-w32/jvm64.def JavaGD/src/javaGD.c JavaGD/src/Makevars.in JavaGD/src/javaGD.h JavaGD/src/Makevars.win JavaGD/src/jGDtalk.h JavaGD/src/config.h.in JavaGD/src/s2u.c JavaGD/src/jGDtalk.c JavaGD/configure.ac JavaGD/DESCRIPTION JavaGD/NAMESPACE JavaGD/version JavaGD/configure JavaGD/getsp.class JavaGD/R/ JavaGD/R/zzz.R JavaGD/R/tools.R JavaGD/R/JavaGD.R JavaGD/R/windows/ JavaGD/R/windows/FirstLib.R JavaGD/man/ JavaGD/man/JavaGD.Rd JavaGD/NEWS JavaGD/inst/ JavaGD/inst/java/ JavaGD/inst/java/javaGD.jar JavaGD/configure.win JavaGD/getsp.java sudo -u fink-bld [ENV] sh -c /tmp/fink.BW4A3 /tmp/fink.SufQv #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-javagd-r31-0.6-1-1/JavaGD/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R pushd .. /sw/build.build/cran-javagd-r31-0.6-1-1 /sw/build.build/cran-javagd-r31-0.6-1-1/JavaGD $BIN_R --verbose CMD build --no-build-vignettes JavaGD * checking for file 'JavaGD/DESCRIPTION' ... OK * preparing 'JavaGD': * checking DESCRIPTION meta-information ... OK * cleaning src * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building 'JavaGD_0.6-1.tar.gz' /bin/rm -rf /sw/build.build/root-cran-javagd-r31-0.6-1-1 /bin/mkdir -p /sw/build.build/root-cran-javagd-r31-0.6-1-1/sw /bin/mkdir -p /sw/build.build/root-cran-javagd-r31-0.6-1-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-javagd-r31-0.6-1-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.mPavO /tmp/fink.M3Egb #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R mkdir -p /sw/build.build/root-cran-javagd-r31-0.6-1-1/sw/lib/R/3.1/site-library pushd /sw/build.build/cran-javagd-r31-0.6-1-1/JavaGD/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-javagd-r31-0.6-1-1/sw/lib/R/3.1/site-library JavaGD /sw/build.build/cran-javagd-r31-0.6-1-1 /sw/build.build/cran-javagd-r31-0.6-1-1/JavaGD * installing *source* package 'JavaGD' ... ** package 'JavaGD' successfully unpacked and MD5 sums checked checking for gcc... flag-sort -r gcc -ffor-scope checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether flag-sort -r gcc -ffor-scope accepts -g... yes checking for flag-sort -r gcc -ffor-scope option to accept ISO C89... none needed checking how to run the C preprocessor... flag-sort -r gcc -ffor-scope -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking whether time.h and sys/time.h may both be included... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking return type of signal handlers... void checking for memset... yes checking for mkdir... yes checking for rmdir... yes checking for select... yes checking for socket... yes checking Java support in R... present: interpreter : '/usr/bin/java' cpp flags : '-I/System/Library/Frameworks/JavaVM.framework/Headers' java libs : '-framework JavaVM' checking whether JNI programs can be compiled... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/config.h ** libs flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/sw/include -I/System/Library/Frameworks/JavaVM.framework/Headers -Iinclude -fPIC -g -O3 -c jGDtalk.c -o jGDtalk.o jGDtalk.c:115:15: warning: 'JNI_GetCreatedJavaVMs' is deprecated [-Wdeprecated-declarations] res = JNI_GetCreatedJavaVMs(&jvm, 1, &l); ^ /System/Library/Frameworks/JavaVM.framework/Headers/jni.h:1940:1: note: 'JNI_GetCreatedJavaVMs' declared here JNI_GetCreatedJavaVMs(JavaVM **, jsize, jsize *); ^ jGDtalk.c:726:8: warning: 'JNI_GetDefaultJavaVMInitArgs' is deprecated [-Wdeprecated-declarations] if(JNI_GetDefaultJavaVMInitArgs(&vm_args) != JNI_OK) ^ /System/Library/Frameworks/JavaVM.framework/Headers/jni.h:1934:1: note: 'JNI_GetDefaultJavaVMInitArgs' declared here JNI_GetDefaultJavaVMInitArgs(void *args); ^ jGDtalk.c:744:11: warning: 'JNI_CreateJavaVM' is deprecated [-Wdeprecated-declarations] res = JNI_CreateJavaVM(&jvm,(void **)&env, &vm_args); ^ /System/Library/Frameworks/JavaVM.framework/Headers/jni.h:1937:1: note: 'JNI_CreateJavaVM' declared here JNI_CreateJavaVM(JavaVM **pvm, void **penv, void *args); ^ 3 warnings generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/sw/include -I/System/Library/Frameworks/JavaVM.framework/Headers -Iinclude -fPIC -g -O3 -c javaGD.c -o javaGD.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/sw/include -I/System/Library/Frameworks/JavaVM.framework/Headers -Iinclude -fPIC -g -O3 -c s2u.c -o s2u.o flag-sort -r gcc -ffor-scope -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib -o JavaGD.dylib jGDtalk.o javaGD.o s2u.o -framework JavaVM -L/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation installing to /sw/build.build/root-cran-javagd-r31-0.6-1-1/sw/lib/R/3.1/site-library/JavaGD/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (JavaGD) install_name_tool -id /sw/lib/R/3.1/site-library/JavaGD/libs/JavaGD.dylib /sw/build.build/root-cran-javagd-r31-0.6-1-1/sw/lib/R/3.1/site-library/JavaGD/libs/JavaGD.dylib sudo -u fink-bld [ENV] sh -c /tmp/fink.ArKHJ /bin/rm -f /sw/build.build/root-cran-javagd-r31-0.6-1-1/sw/info/dir /sw/build.build/root-cran-javagd-r31-0.6-1-1/sw/info/dir.old /sw/build.build/root-cran-javagd-r31-0.6-1-1/sw/share/info/dir /sw/build.build/root-cran-javagd-r31-0.6-1-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-javagd-r31-0.6-1-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-javagd-r31' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-javagd-r31_0.6-1-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-javagd-r31-0.6-1-1 (Reading database ... 7372 files and directories currently installed.) Removing fink-buildlock-cran-javagd-r31-0.6-1-1 ...