printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-maldiquant-r31 2>&1 The package 'cran-maldiquant-r31' will be built without being installed. Reading build dependency for cran-maldiquant-r31-1.10-1... Reading dependency for cran-maldiquant-r31-1.10-1... Reading build conflict for cran-maldiquant-r31-1.10-1... The package 'r-base31-dev' will be installed. Reading dependency for r-base31-dev-3.1.1-2... Reading runtime dependency for r-base31-dev-3.1.1-2... The package 'libgettext8-dev' will be installed. Reading dependency for libgettext8-dev-0.18.3.1-2... Reading runtime dependency for libgettext8-dev-0.18.3.1-2... The package 'r-base31' will be installed. Reading dependency for r-base31-3.1.1-2... Reading runtime dependency for r-base31-3.1.1-2... The package 'r-base31-shlibs' will be installed. Reading dependency for r-base31-shlibs-3.1.1-2... Reading runtime dependency for r-base31-shlibs-3.1.1-2... The package 'gettext-bin' will be installed. Reading dependency for gettext-bin-0.18.3.1-2... Reading runtime dependency for gettext-bin-0.18.3.1-2... The package 'flag-sort' will be installed. Reading dependency for flag-sort-0.5-1... Reading runtime dependency for flag-sort-0.5-1... The package 'cairo-shlibs' will be installed. Reading dependency for cairo-shlibs-1.12.14-1... Reading runtime dependency for cairo-shlibs-1.12.14-1... The package 'gcc49-shlibs' will be installed. Reading dependency for gcc49-shlibs-4.9.1-1000... Reading runtime dependency for gcc49-shlibs-4.9.1-1000... The package 'glib2-shlibs' will be installed. Reading dependency for glib2-shlibs-2.22.4-8... Reading runtime dependency for glib2-shlibs-2.22.4-8... The package 'libicu48-shlibs' will be installed. Reading dependency for libicu48-shlibs-4.8.1.1-2... Reading runtime dependency for libicu48-shlibs-4.8.1.1-2... The package 'libjpeg9-shlibs' will be installed. Reading dependency for libjpeg9-shlibs-9a-1... Reading runtime dependency for libjpeg9-shlibs-9a-1... The package 'liblzma5-shlibs' will be installed. Reading dependency for liblzma5-shlibs-5.0.5-2... Reading runtime dependency for liblzma5-shlibs-5.0.5-2... The package 'libpng16-shlibs' will be installed. Reading dependency for libpng16-shlibs-1.6.12-1... Reading runtime dependency for libpng16-shlibs-1.6.12-1... The package 'libtiff5-shlibs' will be installed. Reading dependency for libtiff5-shlibs-4.0.3-5... Reading runtime dependency for libtiff5-shlibs-4.0.3-5... The package 'pango1-xft2-ft219-shlibs' will be installed. Reading dependency for pango1-xft2-ft219-shlibs-1.24.5-9... Reading runtime dependency for pango1-xft2-ft219-shlibs-1.24.5-9... The package 'libpcre1-shlibs' will be installed. Reading dependency for libpcre1-shlibs-8.35-1... Reading runtime dependency for libpcre1-shlibs-8.35-1... The package 'readline6-shlibs' will be installed. Reading dependency for readline6-shlibs-6.3.6-1... Reading runtime dependency for readline6-shlibs-6.3.6-1... The package 'tcltk' will be installed. Reading dependency for tcltk-8.6.1-104... Reading runtime dependency for tcltk-8.6.1-104... The package 'fontconfig2-shlibs' will be installed. Reading dependency for fontconfig2-shlibs-2.10.2-1... Reading runtime dependency for fontconfig2-shlibs-2.10.2-1... The package 'freetype219-shlibs' will be installed. Reading dependency for freetype219-shlibs-2.4.12-1... Reading runtime dependency for freetype219-shlibs-2.4.12-1... The package 'pixman-shlibs' will be installed. Reading dependency for pixman-shlibs-0.32.4-1... Reading runtime dependency for pixman-shlibs-0.32.4-1... The package 'xdg-base' will be installed. Reading dependency for xdg-base-0.8-2... Reading runtime dependency for xdg-base-0.8-2... The package 'libjbig-shlibs' will be installed. Reading dependency for libjbig-shlibs-2.0-1... Reading runtime dependency for libjbig-shlibs-2.0-1... The package 'libthai-shlibs' will be installed. Reading dependency for libthai-shlibs-0.1.20-1... Reading runtime dependency for libthai-shlibs-0.1.20-1... The package 'xft2-shlibs' will be installed. Reading dependency for xft2-shlibs-2.2.0-3... Reading runtime dependency for xft2-shlibs-2.2.0-3... The package 'tcltk-shlibs' will be installed. Reading dependency for tcltk-shlibs-8.6.1-104... Reading runtime dependency for tcltk-shlibs-8.6.1-104... The package 'fontconfig-config' will be installed. Reading dependency for fontconfig-config-2.10.2-1... Reading runtime dependency for fontconfig-config-2.10.2-1... The package 'expat1-shlibs' will be installed. Reading dependency for expat1-shlibs-2.1.0-1... Reading runtime dependency for expat1-shlibs-2.1.0-1... The package 'libdatrie1-shlibs' will be installed. Reading dependency for libdatrie1-shlibs-0.2.8-2... Reading runtime dependency for libdatrie1-shlibs-0.2.8-2... The package 'libthai' will be installed. Reading dependency for libthai-0.1.20-1... Reading runtime dependency for libthai-0.1.20-1... The following package will be rebuilt: cran-maldiquant-r31 The following 30 additional packages will be installed: cairo-shlibs expat1-shlibs flag-sort fontconfig-config fontconfig2-shlibs freetype219-shlibs gcc49-shlibs gettext-bin glib2-shlibs libdatrie1-shlibs libgettext8-dev libicu48-shlibs libjbig-shlibs libjpeg9-shlibs liblzma5-shlibs libpcre1-shlibs libpng16-shlibs libthai libthai-shlibs libtiff5-shlibs pango1-xft2-ft219-shlibs pixman-shlibs r-base31 r-base31-dev r-base31-shlibs readline6-shlibs tcltk tcltk-shlibs xdg-base xft2-shlibs Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/MALDIquant_1.10.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 1920k 0 1204 0 0 688 0 0:47:37 0:00:01 0:47:36 688 30 1920k 30 592k 0 0 156k 0 0:00:12 0:00:03 0:00:09 156k 55 1920k 55 1070k 0 0 223k 0 0:00:08 0:00:04 0:00:04 223k 79 1920k 79 1531k 0 0 266k 0 0:00:07 0:00:05 0:00:02 266k 100 1920k 100 1920k 0 0 308k 0 0:00:06 0:00:06 --:--:-- 308k Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/expat1-shlibs_2.1.0-1_darwin-x86_64.deb Selecting previously deselected package expat1-shlibs. (Reading database ... 4296 files and directories currently installed.) Unpacking expat1-shlibs (from .../expat1-shlibs_2.1.0-1_darwin-x86_64.deb) ... 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Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libpng16-shlibs_1.6.12-1_darwin-x86_64.deb Selecting previously deselected package libpng16-shlibs. (Reading database ... 4507 files and directories currently installed.) Unpacking libpng16-shlibs (from .../libpng16-shlibs_1.6.12-1_darwin-x86_64.deb) ... Setting up libpng16-shlibs (1.6.12-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libthai-shlibs_0.1.20-1_darwin-x86_64.deb /sw/fink/debs/libthai_0.1.20-1_darwin-x86_64.deb Selecting previously deselected package libthai-shlibs. (Reading database ... 4515 files and directories currently installed.) Unpacking libthai-shlibs (from .../libthai-shlibs_0.1.20-1_darwin-x86_64.deb) ... Selecting previously deselected package libthai. Unpacking libthai (from .../libthai_0.1.20-1_darwin-x86_64.deb) ... 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Unpacking glib2-shlibs (from .../glib2-shlibs_2.22.4-8_darwin-x86_64.deb) ... Setting up glib2-shlibs (2.22.4-8) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/xft2-shlibs_2.2.0-3_darwin-x86_64.deb Selecting previously deselected package xft2-shlibs. (Reading database ... 4856 files and directories currently installed.) Unpacking xft2-shlibs (from .../xft2-shlibs_2.2.0-3_darwin-x86_64.deb) ... Setting up xft2-shlibs (2.2.0-3) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/cairo-shlibs_1.12.14-1_darwin-x86_64.deb Selecting previously deselected package cairo-shlibs. (Reading database ... 4865 files and directories currently installed.) Unpacking cairo-shlibs (from .../cairo-shlibs_1.12.14-1_darwin-x86_64.deb) ... Setting up cairo-shlibs (1.12.14-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/gnome/pango1-xft2-ft219-shlibs_1.24.5-9_darwin-x86_64.deb Selecting previously deselected package pango1-xft2-ft219-shlibs. (Reading database ... 4884 files and directories currently installed.) Unpacking pango1-xft2-ft219-shlibs (from .../pango1-xft2-ft219-shlibs_1.24.5-9_darwin-x86_64.deb) ... Setting up pango1-xft2-ft219-shlibs (1.24.5-9) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/tcltk_8.6.1-104_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/tcltk-shlibs_8.6.1-104_darwin-x86_64.deb Selecting previously deselected package tcltk. (Reading database ... 4928 files and directories currently installed.) Unpacking tcltk (from .../tcltk_8.6.1-104_darwin-x86_64.deb) ... Selecting previously deselected package tcltk-shlibs. Unpacking tcltk-shlibs (from .../tcltk-shlibs_8.6.1-104_darwin-x86_64.deb) ... Setting up tcltk-shlibs (8.6.1-104) ... Setting up tcltk (8.6.1-104) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base31_3.1.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base31-shlibs_3.1.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base31-dev_3.1.1-2_darwin-x86_64.deb Selecting previously deselected package r-base31. (Reading database ... 5404 files and directories currently installed.) Unpacking r-base31 (from .../r-base31_3.1.1-2_darwin-x86_64.deb) ... Selecting previously deselected package r-base31-shlibs. Unpacking r-base31-shlibs (from .../r-base31-shlibs_3.1.1-2_darwin-x86_64.deb) ... Selecting previously deselected package r-base31-dev. Unpacking r-base31-dev (from .../r-base31-dev_3.1.1-2_darwin-x86_64.deb) ... Setting up r-base31-shlibs (3.1.1-2) ... Setting up r-base31-dev (3.1.1-2) ... Setting up r-base31 (3.1.1-2) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-maldiquant-r31-1.10-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-maldiquant-r31-1.10-1' in `/sw/build.build/fink-buildlock-cran-maldiquant-r31-1.10-1_2014.07.30-08.34.01_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-maldiquant-r31-1.10-1_2014.07.30-08.34.01_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-maldiquant-r31-1.10-1. (Reading database ... 7371 files and directories currently installed.) Unpacking fink-buildlock-cran-maldiquant-r31-1.10-1 (from .../fink-buildlock-cran-maldiquant-r31-1.10-1_2014.07.30-08.34.01_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-maldiquant-r31-1.10-1 (2014.07.30-08.34.01) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.k0Gho env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/MALDIquant_1.10.tar.gz MALDIquant/ MALDIquant/inst/ MALDIquant/inst/CITATION MALDIquant/inst/doc/ MALDIquant/inst/doc/MALDIquant.pdf MALDIquant/inst/doc/MALDIquant.Rnw MALDIquant/inst/doc/MALDIquant.R MALDIquant/tests/ MALDIquant/tests/testthat.R MALDIquant/tests/testthat/ MALDIquant/tests/testthat/test_irregular-functions.R MALDIquant/tests/testthat/test_snr-methods.R MALDIquant/tests/testthat/test_transformIntensity-methods.R MALDIquant/tests/testthat/test_removeBaseline-methods.R MALDIquant/tests/testthat/test_detectPeaks-methods.R MALDIquant/tests/testthat/test_referencePeaks-functions.R MALDIquant/tests/testthat/test_grouper-functions.R MALDIquant/tests/testthat/test_determineWarpingFunctions-functions.R MALDIquant/tests/testthat/test_isMassObject-functions.R MALDIquant/tests/testthat/test_estimateNoise-methods.R MALDIquant/tests/testthat/test_totalIonCurrent-methods.R MALDIquant/tests/testthat/test_averageMassSpectra-functions.R MALDIquant/tests/testthat/test_isMassObjectList-functions.R MALDIquant/tests/testthat/test_filterPeaks-functions.R MALDIquant/tests/testthat/test_intensity-methods.R MALDIquant/tests/testthat/test_constructor-functions.R MALDIquant/tests/testthat/test_findLocalMaximaLogical-methods.R MALDIquant/tests/testthat/test_colMedians-functions.R MALDIquant/tests/testthat/test_metaData-methods.R MALDIquant/tests/testthat/test_approxfun-methods.R MALDIquant/tests/testthat/test_binPeaks-functions.R MALDIquant/tests/testthat/test_as.matrix-functions.R MALDIquant/tests/testthat/test_mass-methods.R MALDIquant/tests/testthat/test_smoothingFilters-functions.R MALDIquant/tests/testthat/test_doByLabel-functions.R MALDIquant/tests/testthat/test_unlist-functions.R MALDIquant/tests/testthat/test_calibrateIntensity-methods.R MALDIquant/tests/testthat/test_isEmpty-methods.R MALDIquant/tests/testthat/test_as.matrix-methods.R MALDIquant/tests/testthat/test_isRegular-methods.R MALDIquant/tests/testthat/test_which.closest-functions.R MALDIquant/tests/testthat/test_estimateBaseline-methods.R MALDIquant/tests/testthat/test_subset-methods.R MALDIquant/tests/testthat/test_findEmptyMassObjects-functions.R MALDIquant/tests/testthat/test_length-methods.R MALDIquant/tests/testthat/test_morphologicalFilter-functions.R MALDIquant/tests/testthat/test_merge-functions.R MALDIquant/tests/testthat/test_localMaxima-functions.R MALDIquant/tests/testthat/test_deprecated-functons.R MALDIquant/tests/testthat/test_intensityMatrix-functions.R MALDIquant/tests/testthat/test_warpingFunctions-functions.R MALDIquant/tests/testthat/test_trim-methods.R MALDIquant/tests/testthat/test_removeEmptyMassObjects-functions.R MALDIquant/tests/testthat/test_range-functions.R MALDIquant/tests/testthat/test_show-methods.R MALDIquant/tests/testthat/test_smoothIntensity-methods.R MALDIquant/tests/testthat/test_warp-functions.R MALDIquant/tests/testthat/test_mapply-functions.R MALDIquant/tests/testthat/test_replaceNegativeIntensityValues.R MALDIquant/src/ MALDIquant/src/lowerConvexHull.c MALDIquant/src/morphologicalFilters.c MALDIquant/src/snip.c MALDIquant/src/MALDIquant.h MALDIquant/src/colMedians.c MALDIquant/src/init.c MALDIquant/src/localMaxima.c MALDIquant/NAMESPACE MALDIquant/demo/ MALDIquant/demo/peaks.R MALDIquant/demo/00Index MALDIquant/demo/workflow.R MALDIquant/demo/warping.R MALDIquant/demo/baseline.R MALDIquant/demo/MALDIquant.R MALDIquant/NEWS MALDIquant/data/ MALDIquant/data/fiedler2009subset.RData MALDIquant/R/ MALDIquant/R/calibrateIntensity-functions.R MALDIquant/R/AllClasses.R MALDIquant/R/AllGenerics.R MALDIquant/R/mass-methods.R MALDIquant/R/localMaxima-functions.R MALDIquant/R/Deprecated.R MALDIquant/R/colMedians-functions.R MALDIquant/R/mapply-functions.R MALDIquant/R/show-methods.R MALDIquant/R/isValidHalfWindowSize-functions.R MALDIquant/R/filterPeaks-functions.R MALDIquant/R/as.matrix-functions.R MALDIquant/R/estimateNoise-methods.R MALDIquant/R/lines-methods.R MALDIquant/R/intensityMatrix-functions.R MALDIquant/R/warpingFunction-functions.R MALDIquant/R/textLabelRects-functions.R MALDIquant/R/irregular-functions.R MALDIquant/R/onAttach.R MALDIquant/R/as.matrix-methods.R MALDIquant/R/grouper-functions.R MALDIquant/R/constructor-functions.R MALDIquant/R/isEmpty-methods.R MALDIquant/R/isMassObjectList-functions.R MALDIquant/R/estimateBaseline-methods.R MALDIquant/R/doByLabels-functions.R MALDIquant/R/averageMassSpectra-functions.R MALDIquant/R/deprecated-functions.R MALDIquant/R/merge-functions.R MALDIquant/R/determineWarpingFunctions-functions.R MALDIquant/R/valid-methods.R MALDIquant/R/smoothingFilters-functions.R MALDIquant/R/removeBaseline-methods.R MALDIquant/R/intensity-methods.R MALDIquant/R/plot-methods.R MALDIquant/R/binPeaks-functions.R MALDIquant/R/isMassObject-functions.R MALDIquant/R/unlist-functions.R MALDIquant/R/totalIonCurrent-methods.R MALDIquant/R/morphologicalFilter-functions.R MALDIquant/R/trim-methods.R MALDIquant/R/which.closest-functions.R MALDIquant/R/calibrateIntensity-methods.R MALDIquant/R/show-functions.R MALDIquant/R/length-methods.R MALDIquant/R/findEmptyMassObjects-functions.R MALDIquant/R/estimateBaseline-functions.R MALDIquant/R/removeEmptyMassObjects-functions.R MALDIquant/R/findLocalMaxima-methods.R MALDIquant/R/range-functions.R MALDIquant/R/snr-methods.R MALDIquant/R/replaceNegativeIntensityValues-functions.R MALDIquant/R/transformIntensity-methods.R MALDIquant/R/alignSpectra-functions.R MALDIquant/R/subset-methods.R MALDIquant/R/detectPeaks-methods.R MALDIquant/R/approxfun-methods.R MALDIquant/R/smoothIntensity-methods.R MALDIquant/R/memoryUsage-functions.R MALDIquant/R/warp-functions.R MALDIquant/R/labelPeaks-methods.R MALDIquant/R/referencePeaks-functions.R MALDIquant/R/isFunctionList-functions.R MALDIquant/R/isRegular-methods.R MALDIquant/R/estimateNoise-functions.R MALDIquant/R/points-methods.R MALDIquant/R/metaData-methods.R MALDIquant/R/calculateLabelPositions-methods.R MALDIquant/vignettes/ MALDIquant/vignettes/MALDIquant.bib MALDIquant/vignettes/MALDIquant.Rnw MALDIquant/MD5 MALDIquant/build/ MALDIquant/build/vignette.rds MALDIquant/DESCRIPTION MALDIquant/man/ MALDIquant/man/estimateNoiseMad-functions.Rd MALDIquant/man/savitzkyGolay-functions.Rd MALDIquant/man/determineWarpingFunctions-functions.Rd MALDIquant/man/findEmptyMassObjects-functions.Rd MALDIquant/man/estimateNoise-methods.Rd MALDIquant/man/trim-methods.Rd MALDIquant/man/estimateBaseline-methods.Rd MALDIquant/man/isMassObject-functions.Rd MALDIquant/man/movingAverage-functions.Rd MALDIquant/man/createMassPeaks-functions.Rd MALDIquant/man/plot-methods.Rd MALDIquant/man/MALDIquant-defunct.Rd MALDIquant/man/estimateNoiseSuperSmoother-functions.Rd MALDIquant/man/warp-functions.Rd MALDIquant/man/averageMassSpectra-functions.Rd MALDIquant/man/estimateBaselineMedian-functions.Rd MALDIquant/man/filterPeaks-functions.Rd MALDIquant/man/binPeaks-functions.Rd MALDIquant/man/labelPeaks-methods.Rd MALDIquant/man/mergeMassPeaks-functions.Rd MALDIquant/man/intensityMatrix-functions.Rd MALDIquant/man/alignSpectra-functions.Rd MALDIquant/man/AbstractMassObject-class.Rd MALDIquant/man/fiedler2009subset.Rd MALDIquant/man/MassPeaks-class.Rd MALDIquant/man/createMassSpectrum-functions.Rd MALDIquant/man/isMassObjectList-functions.Rd MALDIquant/man/estimateBaselineSnip-functions.Rd MALDIquant/man/MALDIquant-package.Rd MALDIquant/man/estimateBaselineConvexHull-functions.Rd MALDIquant/man/detectPeaks-methods.Rd MALDIquant/man/calibrateIntensity-methods.Rd MALDIquant/man/removeBaseline-methods.Rd MALDIquant/man/estimateBaselineTopHat-functions.Rd MALDIquant/man/transformIntensity-methods.Rd MALDIquant/man/referencePeaks-functions.Rd MALDIquant/man/MassSpectrum-class.Rd MALDIquant/man/smoothIntensity-methods.Rd MALDIquant/man/MALDIquant-deprecated.Rd sudo -u fink-bld [ENV] sh -c /tmp/fink.9KShn /tmp/fink.LA0aM #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-maldiquant-r31-1.10-1/MALDIquant/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R pushd .. /sw/build.build/cran-maldiquant-r31-1.10-1 /sw/build.build/cran-maldiquant-r31-1.10-1/MALDIquant $BIN_R --verbose CMD build --no-build-vignettes MALDIquant * checking for file 'MALDIquant/DESCRIPTION' ... OK * preparing 'MALDIquant': * checking DESCRIPTION meta-information ... OK * cleaning src * checking vignette meta-information ... OK * checking for LF line-endings in source and make files * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added * building 'MALDIquant_1.10.tar.gz' /bin/rm -rf /sw/build.build/root-cran-maldiquant-r31-1.10-1 /bin/mkdir -p /sw/build.build/root-cran-maldiquant-r31-1.10-1/sw /bin/mkdir -p /sw/build.build/root-cran-maldiquant-r31-1.10-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-maldiquant-r31-1.10-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.jrXdP /tmp/fink.AN8VW #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R mkdir -p /sw/build.build/root-cran-maldiquant-r31-1.10-1/sw/lib/R/3.1/site-library pushd /sw/build.build/cran-maldiquant-r31-1.10-1/MALDIquant/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-maldiquant-r31-1.10-1/sw/lib/R/3.1/site-library MALDIquant /sw/build.build/cran-maldiquant-r31-1.10-1 /sw/build.build/cran-maldiquant-r31-1.10-1/MALDIquant * installing *source* package 'MALDIquant' ... ** package 'MALDIquant' successfully unpacked and MD5 sums checked ** libs flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c colMedians.c -o colMedians.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c init.c -o init.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c localMaxima.c -o localMaxima.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c lowerConvexHull.c -o lowerConvexHull.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c morphologicalFilters.c -o morphologicalFilters.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c snip.c -o snip.o flag-sort -r gcc -ffor-scope -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib -o MALDIquant.dylib colMedians.o init.o localMaxima.o lowerConvexHull.o morphologicalFilters.o snip.o -L/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation installing to /sw/build.build/root-cran-maldiquant-r31-1.10-1/sw/lib/R/3.1/site-library/MALDIquant/libs ** R ** data ** demo ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (MALDIquant) install_name_tool -id /sw/lib/R/3.1/site-library/MALDIquant/libs/MALDIquant.dylib /sw/build.build/root-cran-maldiquant-r31-1.10-1/sw/lib/R/3.1/site-library/MALDIquant/libs/MALDIquant.dylib sudo -u fink-bld [ENV] sh -c /tmp/fink.INDjs /bin/rm -f /sw/build.build/root-cran-maldiquant-r31-1.10-1/sw/info/dir /sw/build.build/root-cran-maldiquant-r31-1.10-1/sw/info/dir.old /sw/build.build/root-cran-maldiquant-r31-1.10-1/sw/share/info/dir /sw/build.build/root-cran-maldiquant-r31-1.10-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-maldiquant-r31-1.10-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-maldiquant-r31' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-maldiquant-r31_1.10-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-maldiquant-r31-1.10-1 (Reading database ... 7372 files and directories currently installed.) Removing fink-buildlock-cran-maldiquant-r31-1.10-1 ...