printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-maptools-r30 2>&1 The package 'cran-maptools-r30' will be built without being installed. Reading build dependency for cran-maptools-r30-0.8-29-2... Reading dependency for cran-maptools-r30-0.8-29-2... Reading build conflict for cran-maptools-r30-0.8-29-2... The package 'r-base30-dev' will be installed. Reading dependency for r-base30-dev-3.0.3-8... Reading runtime dependency for r-base30-dev-3.0.3-8... The package 'libgettext8-dev' will be installed. Reading dependency for libgettext8-dev-0.18.3.1-2... Reading runtime dependency for libgettext8-dev-0.18.3.1-2... The package 'r-base30' will be installed. Reading dependency for r-base30-3.0.3-8... Reading runtime dependency for r-base30-3.0.3-8... The package 'cran-sp-r30' will be installed. Reading dependency for cran-sp-r30-1.0-15-2... Reading runtime dependency for cran-sp-r30-1.0-15-2... The package 'r-base30-shlibs' will be installed. Reading dependency for r-base30-shlibs-3.0.3-8... Reading runtime dependency for r-base30-shlibs-3.0.3-8... The package 'gettext-bin' will be installed. Reading dependency for gettext-bin-0.18.3.1-2... Reading runtime dependency for gettext-bin-0.18.3.1-2... The following package will be rebuilt: cran-maptools-r30 The following 6 additional packages will be installed: cran-sp-r30 gettext-bin libgettext8-dev r-base30 r-base30-dev r-base30-shlibs Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/maptools_0.8-29.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 1 1435k 1 15684 0 0 47038 0 0:00:31 --:--:-- 0:00:31 46958 33 1435k 33 476k 0 0 364k 0 0:00:03 0:00:01 0:00:02 364k 54 1435k 54 776k 0 0 318k 0 0:00:04 0:00:02 0:00:02 318k 97 1435k 97 1406k 0 0 431k 0 0:00:03 0:00:03 --:--:-- 431k 100 1435k 100 1435k 0 0 437k 0 0:00:03 0:00:03 --:--:-- 437k Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/libgettext8-dev_0.18.3.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/base/gettext-bin_0.18.3.1-2_darwin-x86_64.deb Selecting previously deselected package libgettext8-dev. (Reading database ... 7537 files and directories currently installed.) Unpacking libgettext8-dev (from .../libgettext8-dev_0.18.3.1-2_darwin-x86_64.deb) ... Selecting previously deselected package gettext-bin. Unpacking gettext-bin (from .../gettext-bin_0.18.3.1-2_darwin-x86_64.deb) ... Setting up gettext-bin (0.18.3.1-2) ... Setting up libgettext8-dev (0.18.3.1-2) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base30_3.0.3-8_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base30-shlibs_3.0.3-8_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base30-dev_3.0.3-8_darwin-x86_64.deb Selecting previously deselected package r-base30. (Reading database ... 7623 files and directories currently installed.) Unpacking r-base30 (from .../r-base30_3.0.3-8_darwin-x86_64.deb) ... Selecting previously deselected package r-base30-shlibs. Unpacking r-base30-shlibs (from .../r-base30-shlibs_3.0.3-8_darwin-x86_64.deb) ... Selecting previously deselected package r-base30-dev. dpkg: considering removing r-base215-dev in favour of r-base30-dev ... dpkg: yes, will remove r-base215-dev in favour of r-base30-dev. Unpacking r-base30-dev (from .../r-base30-dev_3.0.3-8_darwin-x86_64.deb) ... Setting up r-base30-shlibs (3.0.3-8) ... Setting up r-base30-dev (3.0.3-8) ... Setting up r-base30 (3.0.3-8) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/cran-sp-r30_1.0-15-2_darwin-x86_64.deb Selecting previously deselected package cran-sp-r30. (Reading database ... 9553 files and directories currently installed.) Unpacking cran-sp-r30 (from .../cran-sp-r30_1.0-15-2_darwin-x86_64.deb) ... Setting up cran-sp-r30 (1.0-15-2) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-maptools-r30-0.8-29-2 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-maptools-r30-0.8-29-2' in `/sw/build.build/fink-buildlock-cran-maptools-r30-0.8-29-2_2014.07.27-12.43.14_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-maptools-r30-0.8-29-2_2014.07.27-12.43.14_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-maptools-r30-0.8-29-2. (Reading database ... 9611 files and directories currently installed.) Unpacking fink-buildlock-cran-maptools-r30-0.8-29-2 (from .../fink-buildlock-cran-maptools-r30-0.8-29-2_2014.07.27-12.43.14_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-maptools-r30-0.8-29-2 (2014.07.27-12.43.14) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.o7UQh env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/maptools_0.8-29.tar.gz maptools/ maptools/inst/ maptools/inst/changes maptools/inst/share/ maptools/inst/share/co37_d90.e00 maptools/inst/share/nc_xtra.dbf maptools/inst/share/90mfips.txt maptools/inst/share/Splus.map maptools/inst/share/gshhs_c.b maptools/inst/share/wdb_borders_c.b maptools/inst/grids/ maptools/inst/grids/test.ag maptools/inst/grids/simple.ag maptools/inst/README maptools/inst/shapes/ maptools/inst/shapes/co45_d90.shx maptools/inst/shapes/co45_d90.dbf maptools/inst/shapes/sids.dbf maptools/inst/shapes/columbus.shx maptools/inst/shapes/co51_d90.shx maptools/inst/shapes/fylk-val-ll.shp maptools/inst/shapes/baltim.shx maptools/inst/shapes/fylk-val-ll.dbf maptools/inst/shapes/co45_d90.shp maptools/inst/shapes/co37_d90.shx maptools/inst/shapes/baltim.dbf maptools/inst/shapes/co51_d90.dbf maptools/inst/shapes/pointZ.dbf maptools/inst/shapes/columbus.shp maptools/inst/shapes/fylk-val-ll.shx maptools/inst/shapes/baltim.shp maptools/inst/shapes/fylk-val.shp maptools/inst/shapes/sids.shx maptools/inst/shapes/pointZ.shp maptools/inst/shapes/fylk-val.dbf maptools/inst/shapes/pointZ.shx maptools/inst/shapes/sids.shp maptools/inst/shapes/co37_d90.dbf maptools/inst/shapes/co37_d90.shp maptools/inst/shapes/columbus.dbf maptools/inst/shapes/pointZ.prj maptools/inst/shapes/fylk-val.shx maptools/inst/shapes/co51_d90.shp maptools/inst/ChangeLog maptools/inst/doc/ maptools/inst/doc/combine_maptools.Rnw maptools/inst/doc/combine_maptools.R maptools/inst/doc/combine_maptools.pdf maptools/src/ maptools/src/maptools.h maptools/src/shptree.c maptools/src/Rgshhs.c maptools/src/shpopen.c maptools/src/Rcentroid.c maptools/src/Rshapeget.c maptools/src/Rshapewrite1.c maptools/src/shapefil.h maptools/src/Rshapeinfo.c maptools/src/insiders.c maptools/src/Rshapewrite.c maptools/src/Rgshhs.h maptools/src/pip.c maptools/NAMESPACE maptools/data/ maptools/data/SplashDams.rda maptools/data/wrld_simpl.rda maptools/data/gpcholes.rda maptools/data/state.vbm.rda maptools/R/ maptools/R/sp_bind.R maptools/R/pointLabelBase.R maptools/R/azimuth.R maptools/R/subset.R maptools/R/Spatial-methods.R maptools/R/point.in.polygon.R maptools/R/kmlLines.R maptools/R/sp2pbs.R maptools/R/pcent.R maptools/R/sp2WB.R maptools/R/getKMLcoordinates.R maptools/R/point_line_distance.R maptools/R/Rgshhs.R maptools/R/sp_spat1.R maptools/R/SP2owin.R maptools/R/spatstat1.R maptools/R/readSplus.R maptools/R/readGPS.R maptools/R/sp_tools.R maptools/R/kmlPoints.R maptools/R/DP.R maptools/R/nowrapRecenter.R maptools/R/GE_png.R maptools/R/union.R maptools/R/lineLabel.R maptools/R/SpatialLines-methods.R maptools/R/asciigrid.R maptools/R/kmlPolygons.R maptools/R/SpatialPolys-methods.R maptools/R/pointLabelLattice.R maptools/R/midpoint.R maptools/R/sp2Mondrian.R maptools/R/maptoolsChanges.R maptools/R/maptools.R maptools/R/shapelib.R maptools/R/sun-methods.R maptools/R/dotsinpolys.R maptools/R/sp2tmap.R maptools/R/spmaps.R maptools/R/gc_dist.R maptools/R/SpatialPoints-methods.R maptools/R/plot.Map.R maptools/R/checkHoles.R maptools/R/CCmaps.R maptools/R/kmlPolygon.R maptools/R/zzz.R maptools/R/sun.R maptools/R/AAA.R maptools/R/kmlLine.R maptools/R/colslegs.R maptools/R/elide.R maptools/vignettes/ maptools/vignettes/combine_maptools.Rnw maptools/MD5 maptools/build/ maptools/build/vignette.rds maptools/DESCRIPTION maptools/ChangeLog maptools/man/ maptools/man/getinfo.shape.Rd maptools/man/elide-methods.Rd maptools/man/SpatialLinesMidPoints.Rd maptools/man/kmlLines.Rd maptools/man/gcDestination.Rd maptools/man/ppp.Rd maptools/man/symbolsInPolys.Rd maptools/man/pal2SpatialPolygons.Rd maptools/man/dotsInPolys.Rd maptools/man/kmlOverlay.Rd maptools/man/sun-methods.Rd maptools/man/ContourLines2SLDF.Rd maptools/man/readShapePoly.Rd maptools/man/sp2WB.Rd maptools/man/asciigrid.Rd maptools/man/nowrapRecenter.Rd maptools/man/Rgshhs.Rd maptools/man/lineLabel.Rd maptools/man/kmlPolygon.Rd maptools/man/readShapeSpatial.Rd maptools/man/pointLabelLattice.Rd maptools/man/unionSpatialPolygons.Rd maptools/man/pointLabelBase.Rd maptools/man/snapPointsToLines.Rd maptools/man/sp2tmap.Rd maptools/man/GE_SpatialGrid.Rd maptools/man/kmlLine.Rd maptools/man/spCbind-methods.Rd maptools/man/leglabs.Rd maptools/man/SpatialLines2PolySet.Rd maptools/man/wrld_simpl.Rd maptools/man/spRbind-methods.Rd maptools/man/nearestPointOnSegment.Rd maptools/man/gzAzimuth.Rd maptools/man/readSplus.Rd maptools/man/readShapeLines.Rd maptools/man/readShapePoints.Rd maptools/man/CCmaps.Rd maptools/man/nearestPointOnLine.Rd maptools/man/as.ppp.Rd maptools/man/kmlPolygons.Rd maptools/man/holepolys.Rd maptools/man/getKMLcoordinates.Rd maptools/man/kmlPoints.Rd maptools/man/thinnedSpatialPoly.Rd maptools/man/checkPolygonsHoles.Rd maptools/man/SplashDams.Rd maptools/man/readGPS.Rd maptools/man/map2SpatialPolygons.Rd maptools/man/state.vbm.Rd maptools/man/sp2Mondrian.Rd sudo -u fink-bld [ENV] sh -c /tmp/fink.RT5Xs /tmp/fink.OzqMB #!/bin/sh -ev export TMPDIR=/sw/build.build/cran-maptools-r30-0.8-29-2/maptools/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R pushd .. /sw/build.build/cran-maptools-r30-0.8-29-2 /sw/build.build/cran-maptools-r30-0.8-29-2/maptools if [[ 3.0 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes maptools else $BIN_R --verbose CMD build --no-vignettes maptools fi * checking for file 'maptools/DESCRIPTION' ... OK * preparing 'maptools': * checking DESCRIPTION meta-information ... OK * cleaning src * checking vignette meta-information ... OK * checking for LF line-endings in source and make files * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added * building 'maptools_0.8-29.tar.gz' /bin/rm -rf /sw/build.build/root-cran-maptools-r30-0.8-29-2 /bin/mkdir -p /sw/build.build/root-cran-maptools-r30-0.8-29-2/sw /bin/mkdir -p /sw/build.build/root-cran-maptools-r30-0.8-29-2/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-maptools-r30-0.8-29-2 sudo -u fink-bld [ENV] sh -c /tmp/fink.VUbiH /tmp/fink.KIanO #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R mkdir -p /sw/build.build/root-cran-maptools-r30-0.8-29-2/sw/lib/R/3.0/site-library pushd /sw/build.build/cran-maptools-r30-0.8-29-2/maptools/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-maptools-r30-0.8-29-2/sw/lib/R/3.0/site-library maptools /sw/build.build/cran-maptools-r30-0.8-29-2 /sw/build.build/cran-maptools-r30-0.8-29-2/maptools * installing *source* package 'maptools' ... ** package 'maptools' successfully unpacked and MD5 sums checked ** libs flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c Rcentroid.c -o Rcentroid.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c Rgshhs.c -o Rgshhs.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c Rshapeget.c -o Rshapeget.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c Rshapeinfo.c -o Rshapeinfo.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c Rshapewrite.c -o Rshapewrite.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c Rshapewrite1.c -o Rshapewrite1.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c insiders.c -o insiders.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c pip.c -o pip.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c shpopen.c -o shpopen.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c shptree.c -o shptree.o flag-sort -r gcc -ffor-scope -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib -o maptools.dylib Rcentroid.o Rgshhs.o Rshapeget.o Rshapeinfo.o Rshapewrite.o Rshapewrite1.o insiders.o pip.o shpopen.o shptree.o -L/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation installing to /sw/build.build/root-cran-maptools-r30-0.8-29-2/sw/lib/R/3.0/site-library/maptools/libs ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (maptools) install_name_tool -id /sw/lib/R/3.0/site-library/maptools/libs/maptools.dylib /sw/build.build/root-cran-maptools-r30-0.8-29-2/sw/lib/R/3.0/site-library/maptools/libs/maptools.dylib sudo -u fink-bld [ENV] sh -c /tmp/fink.k1kZK /bin/rm -f /sw/build.build/root-cran-maptools-r30-0.8-29-2/sw/info/dir /sw/build.build/root-cran-maptools-r30-0.8-29-2/sw/info/dir.old /sw/build.build/root-cran-maptools-r30-0.8-29-2/sw/share/info/dir /sw/build.build/root-cran-maptools-r30-0.8-29-2/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-maptools-r30-0.8-29-2 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-maptools-r30' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-maptools-r30_0.8-29-2_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-maptools-r30-0.8-29-2 (Reading database ... 9612 files and directories currently installed.) Removing fink-buildlock-cran-maptools-r30-0.8-29-2 ...