printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-markdown-r215 2>&1 The package 'cran-markdown-r215' will be built without being installed. Reading build dependency for cran-markdown-r215-0.6.5-2... Reading dependency for cran-markdown-r215-0.6.5-2... Reading build conflict for cran-markdown-r215-0.6.5-2... The package 'r-base215-dev' will be installed. Reading dependency for r-base215-dev-2.15.3-112... Reading runtime dependency for r-base215-dev-2.15.3-112... The package 'r-base215' will be installed. Reading dependency for r-base215-2.15.3-112... Reading runtime dependency for r-base215-2.15.3-112... The package 'r-base215-shlibs' will be installed. Reading dependency for r-base215-shlibs-2.15.3-112... Reading runtime dependency for r-base215-shlibs-2.15.3-112... The following package will be rebuilt: cran-markdown-r215 The following 3 additional packages will be installed: r-base215 r-base215-dev r-base215-shlibs Do you want to continue? [Y/n] (assuming default) Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base215_2.15.3-112_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base215-shlibs_2.15.3-112_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base215-dev_2.15.3-112_darwin-x86_64.deb Selecting previously deselected package r-base215. (Reading database ... 7371 files and directories currently installed.) Unpacking r-base215 (from .../r-base215_2.15.3-112_darwin-x86_64.deb) ... Selecting previously deselected package r-base215-shlibs. Unpacking r-base215-shlibs (from .../r-base215-shlibs_2.15.3-112_darwin-x86_64.deb) ... Selecting previously deselected package r-base215-dev. dpkg: considering removing r-base31-dev in favour of r-base215-dev ... dpkg: yes, will remove r-base31-dev in favour of r-base215-dev. Unpacking r-base215-dev (from .../r-base215-dev_2.15.3-112_darwin-x86_64.deb) ... Setting up r-base215-shlibs (2.15.3-112) ... Setting up r-base215-dev (2.15.3-112) ... Setting up r-base215 (2.15.3-112) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-markdown-r215-0.6.5-2 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-markdown-r215-0.6.5-2' in `/sw/build.build/fink-buildlock-cran-markdown-r215-0.6.5-2_2014.07.30-00.27.07_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-markdown-r215-0.6.5-2_2014.07.30-00.27.07_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-markdown-r215-0.6.5-2. (Reading database ... 9473 files and directories currently installed.) Unpacking fink-buildlock-cran-markdown-r215-0.6.5-2 (from .../fink-buildlock-cran-markdown-r215-0.6.5-2_2014.07.30-00.27.07_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-markdown-r215-0.6.5-2 (2014.07.30-00.27.07) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.UYZEY env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/markdown_0.6.5.tar.gz markdown/ markdown/inst/ markdown/inst/COPYING markdown/inst/examples/ markdown/inst/examples/HTMLOptions.R markdown/inst/examples/markdownExtensions.R markdown/inst/resources/ markdown/inst/resources/markdown.css markdown/inst/resources/markdown.html markdown/inst/resources/mathjax.html markdown/inst/resources/r_highlight.html markdown/inst/doc/ markdown/inst/doc/markdown-examples.Rmd markdown/inst/doc/markdown-examples.html markdown/inst/doc/markdown-output.R markdown/inst/doc/markdown-output.html markdown/inst/doc/markdown-examples.R markdown/inst/doc/markdown-output.Rmd markdown/inst/NOTICE markdown/inst/include/ markdown/inst/include/markdown.h markdown/inst/include/markdown_rstubs.h markdown/inst/include/markdown_rstubs.c markdown/inst/include/autolink.h markdown/inst/include/buffer.h markdown/tests/ markdown/tests/tests.Rout.save markdown/tests/tests.R markdown/src/ markdown/src/houdini.h markdown/src/buffer.c markdown/src/stack.c markdown/src/Rmarkdown.h markdown/src/Rbase64.c markdown/src/markdown.h markdown/src/houdini_href_e.c markdown/src/markdown.c markdown/src/autolink.c markdown/src/houdini_html_e.c markdown/src/html_blocks.h markdown/src/stack.h markdown/src/html_smartypants.c markdown/src/html.h markdown/src/autolink.h markdown/src/html.c markdown/src/Rinit.c markdown/src/buffer.h markdown/src/Rmarkdown.c markdown/src/sundown_version.h markdown/NAMESPACE markdown/NEWS markdown/R/ markdown/R/utils.R markdown/R/markdown-package.R markdown/R/renderMarkdown.R markdown/R/rpubsUpload.R markdown/vignettes/ markdown/vignettes/markdown-examples.Rmd markdown/vignettes/markdown-output.Rmd markdown/README.md markdown/MD5 markdown/build/ markdown/build/vignette.rds markdown/DESCRIPTION markdown/man/ markdown/man/markdownHTMLOptions.Rd markdown/man/registeredRenderers.Rd markdown/man/rendererExists.Rd markdown/man/markdownToHTML.Rd markdown/man/markdown.Rd markdown/man/markdownExtensions.Rd markdown/man/renderMarkdown.Rd markdown/man/rpubsUpload.Rd markdown/man/rendererOutputType.Rd markdown/man/smartypants.Rd sudo -u fink-bld [ENV] sh -c /tmp/fink.56HcB /tmp/fink.vL8dZ #!/bin/sh -ev export TMPDIR=/sw/build.build/cran-markdown-r215-0.6.5-2/markdown/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R pushd .. /sw/build.build/cran-markdown-r215-0.6.5-2 /sw/build.build/cran-markdown-r215-0.6.5-2/markdown if [[ 2.15 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes markdown else $BIN_R --verbose CMD build --no-vignettes markdown fi WARNING: ignoring environment value of R_HOME * checking for file 'markdown/DESCRIPTION' ... OK * preparing 'markdown': * checking DESCRIPTION meta-information ... OK * cleaning src * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building 'markdown_0.6.5.tar.gz' /bin/rm -rf /sw/build.build/root-cran-markdown-r215-0.6.5-2 /bin/mkdir -p /sw/build.build/root-cran-markdown-r215-0.6.5-2/sw /bin/mkdir -p /sw/build.build/root-cran-markdown-r215-0.6.5-2/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-markdown-r215-0.6.5-2 sudo -u fink-bld [ENV] sh -c /tmp/fink.b87C6 /tmp/fink.YHxzV #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R mkdir -p /sw/build.build/root-cran-markdown-r215-0.6.5-2/sw/lib/R/2.15/site-library pushd /sw/build.build/cran-markdown-r215-0.6.5-2/markdown/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-markdown-r215-0.6.5-2/sw/lib/R/2.15/site-library markdown /sw/build.build/cran-markdown-r215-0.6.5-2 /sw/build.build/cran-markdown-r215-0.6.5-2/markdown WARNING: ignoring environment value of R_HOME * installing *source* package 'markdown' ... ** package 'markdown' successfully unpacked and MD5 sums checked ** libs flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c Rbase64.c -o Rbase64.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c Rinit.c -o Rinit.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c Rmarkdown.c -o Rmarkdown.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c autolink.c -o autolink.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c buffer.c -o buffer.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c houdini_href_e.c -o houdini_href_e.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c houdini_html_e.c -o houdini_html_e.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c html.c -o html.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c html_smartypants.c -o html_smartypants.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c markdown.c -o markdown.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c stack.c -o stack.o flag-sort -r gcc -ffor-scope -dynamiclib -Wl,-headerpad_max_install_names -single_module -multiply_defined suppress -L/sw/lib -o markdown.dylib Rbase64.o Rinit.o Rmarkdown.o autolink.o buffer.o houdini_href_e.o houdini_html_e.o html.o html_smartypants.o markdown.o stack.o -L/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation installing to /sw/build.build/root-cran-markdown-r215-0.6.5-2/sw/lib/R/2.15/site-library/markdown/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (markdown) install_name_tool -id /sw/lib/R/2.15/site-library/markdown/libs/markdown.dylib /sw/build.build/root-cran-markdown-r215-0.6.5-2/sw/lib/R/2.15/site-library/markdown/libs/markdown.dylib sudo -u fink-bld [ENV] sh -c /tmp/fink.97AC2 /bin/rm -f /sw/build.build/root-cran-markdown-r215-0.6.5-2/sw/info/dir /sw/build.build/root-cran-markdown-r215-0.6.5-2/sw/info/dir.old /sw/build.build/root-cran-markdown-r215-0.6.5-2/sw/share/info/dir /sw/build.build/root-cran-markdown-r215-0.6.5-2/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-markdown-r215-0.6.5-2 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-markdown-r215' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-markdown-r215_0.6.5-2_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-markdown-r215-0.6.5-2 (Reading database ... 9474 files and directories currently installed.) Removing fink-buildlock-cran-markdown-r215-0.6.5-2 ...