printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-mass-r31 2>&1 The package 'cran-mass-r31' will be built without being installed. Reading build dependency for cran-mass-r31-7.3-32-2... Reading dependency for cran-mass-r31-7.3-32-2... Reading build conflict for cran-mass-r31-7.3-32-2... The package 'r-base31-dev' will be installed. Reading dependency for r-base31-dev-3.1.1-2... Reading runtime dependency for r-base31-dev-3.1.1-2... The package 'r-base31' will be installed. Reading dependency for r-base31-3.1.1-2... Reading runtime dependency for r-base31-3.1.1-2... The package 'r-base31-shlibs' will be installed. Reading dependency for r-base31-shlibs-3.1.1-2... Reading runtime dependency for r-base31-shlibs-3.1.1-2... The following package will be rebuilt: cran-mass-r31 The following 3 additional packages will be installed: r-base31 r-base31-dev r-base31-shlibs Do you want to continue? [Y/n] (assuming default) Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base31_3.1.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base31-shlibs_3.1.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base31-dev_3.1.1-2_darwin-x86_64.deb Selecting previously deselected package r-base31. (Reading database ... 7586 files and directories currently installed.) Unpacking r-base31 (from .../r-base31_3.1.1-2_darwin-x86_64.deb) ... Selecting previously deselected package r-base31-shlibs. Unpacking r-base31-shlibs (from .../r-base31-shlibs_3.1.1-2_darwin-x86_64.deb) ... Selecting previously deselected package r-base31-dev. dpkg: considering removing r-base215-dev in favour of r-base31-dev ... dpkg: yes, will remove r-base215-dev in favour of r-base31-dev. Unpacking r-base31-dev (from .../r-base31-dev_3.1.1-2_darwin-x86_64.deb) ... Setting up r-base31-shlibs (3.1.1-2) ... Setting up r-base31-dev (3.1.1-2) ... Setting up r-base31 (3.1.1-2) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-mass-r31-7.3-32-2 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-mass-r31-7.3-32-2' in `/sw/build.build/fink-buildlock-cran-mass-r31-7.3-32-2_2014.07.27-08.46.25_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-mass-r31-7.3-32-2_2014.07.27-08.46.25_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-mass-r31-7.3-32-2. (Reading database ... 9503 files and directories currently installed.) Unpacking fink-buildlock-cran-mass-r31-7.3-32-2 (from .../fink-buildlock-cran-mass-r31-7.3-32-2_2014.07.27-08.46.25_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-mass-r31-7.3-32-2 (2014.07.27-08.46.25) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.zWXok env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/MASS_7.3-32.tar.gz MASS/ MASS/po/ MASS/po/R-fr.po MASS/po/R-de.po MASS/po/R-MASS.pot MASS/po/R-pl.po MASS/po/R-ko.po MASS/inst/ MASS/inst/po/ MASS/inst/po/pl/ MASS/inst/po/pl/LC_MESSAGES/ MASS/inst/po/pl/LC_MESSAGES/R-MASS.mo MASS/inst/po/en@quot/ MASS/inst/po/en@quot/LC_MESSAGES/ MASS/inst/po/en@quot/LC_MESSAGES/R-MASS.mo MASS/inst/po/ko/ MASS/inst/po/ko/LC_MESSAGES/ MASS/inst/po/ko/LC_MESSAGES/R-MASS.mo MASS/inst/po/fr/ MASS/inst/po/fr/LC_MESSAGES/ MASS/inst/po/fr/LC_MESSAGES/R-MASS.mo MASS/inst/po/de/ MASS/inst/po/de/LC_MESSAGES/ MASS/inst/po/de/LC_MESSAGES/R-MASS.mo MASS/inst/CITATION MASS/inst/scripts/ MASS/inst/scripts/ch11.R MASS/inst/scripts/ch10.R MASS/inst/scripts/ch09.R MASS/inst/scripts/ch07.R MASS/inst/scripts/ch14.R MASS/inst/scripts/ch01.R MASS/inst/scripts/ch15.R MASS/inst/scripts/ch02.R MASS/inst/scripts/ch13.R MASS/inst/scripts/ch06.R MASS/inst/scripts/ch16.R MASS/inst/scripts/ch05.R MASS/inst/scripts/ch08.R MASS/inst/scripts/ch12.R MASS/inst/scripts/ch04.R MASS/inst/scripts/ch03.R MASS/inst/NEWS MASS/tests/ MASS/tests/regression.R MASS/tests/hubers.R MASS/tests/Examples/ MASS/tests/Examples/MASS-Ex.Rout.save MASS/tests/fitdistr.R MASS/tests/profile.R MASS/tests/fitdistr.Rout.save MASS/tests/scripts.R MASS/tests/BankWages.rda MASS/tests/confint.R MASS/tests/glm.nb.R MASS/tests/rlm.R MASS/tests/polr.R MASS/tests/regression.Rout.save MASS/tests/lme.R MASS/src/ MASS/src/MASS.c MASS/src/lqs.c MASS/NAMESPACE MASS/data/ MASS/data/Animals.rda MASS/data/Pima.tr2.rda MASS/data/ships.rda MASS/data/Pima.te.rda MASS/data/forbes.rda MASS/data/geyser.rda MASS/data/Sitka89.rda MASS/data/oats.rda MASS/data/biopsy.rda MASS/data/michelson.rda MASS/data/bacteria.rda MASS/data/deaths.rda MASS/data/npk.rda MASS/data/Aids2.rda MASS/data/topo.rda MASS/data/eagles.rda MASS/data/Rubber.rda MASS/data/survey.rda MASS/data/Pima.tr.rda MASS/data/GAGurine.rda MASS/data/shrimp.rda MASS/data/Cars93.rda MASS/data/epil.rda MASS/data/cabbages.rda MASS/data/Rabbit.rda MASS/data/synth.tr.rda MASS/data/hills.rda MASS/data/beav2.rda MASS/data/stormer.rda MASS/data/genotype.rda MASS/data/menarche.rda MASS/data/phones.rda MASS/data/fgl.rda MASS/data/UScrime.rda MASS/data/caith.rda MASS/data/gilgais.rda MASS/data/galaxies.rda MASS/data/Sitka.rda MASS/data/birthwt.rda MASS/data/farms.rda MASS/data/snails.rda MASS/data/cpus.rda MASS/data/minn38.rda MASS/data/SP500.rda MASS/data/petrol.rda MASS/data/VA.rda MASS/data/Traffic.rda MASS/data/crabs.rda MASS/data/gehan.rda MASS/data/npr1.rda MASS/data/cement.rda MASS/data/OME.rda MASS/data/shoes.rda MASS/data/wtloss.rda MASS/data/UScereal.rda MASS/data/mammals.rda MASS/data/Cushings.rda MASS/data/DDT.rda MASS/data/housing.rda MASS/data/leuk.rda MASS/data/immer.rda MASS/data/whiteside.rda MASS/data/coop.rda MASS/data/shuttle.rda MASS/data/cats.rda MASS/data/anorexia.rda MASS/data/Melanoma.rda MASS/data/newcomb.rda MASS/data/Boston.rda MASS/data/waders.rda MASS/data/road.rda MASS/data/painters.rda MASS/data/Skye.rda MASS/data/quine.rda MASS/data/accdeaths.rda MASS/data/beav1.rda MASS/data/mcycle.rda MASS/data/nlschools.rda MASS/data/Insurance.rda MASS/data/synth.te.rda MASS/data/steam.rda MASS/data/motors.rda MASS/data/rotifer.rda MASS/data/abbey.rda MASS/data/muscle.rda MASS/data/chem.rda MASS/data/drivers.rda MASS/R/ MASS/R/contr.sdif.R MASS/R/sammon.R MASS/R/eqscplot.R MASS/R/lda.R MASS/R/neg.bin.R MASS/R/stepAIC.R MASS/R/cov.trob.R MASS/R/huber.R MASS/R/logtrans.R MASS/R/hubers.R MASS/R/mca.R MASS/R/rms.curv.R MASS/R/fitdistr.R MASS/R/truehist.R MASS/R/fractions.R MASS/R/corresp.R MASS/R/hist.scott.R MASS/R/lm.gls.R MASS/R/loglm.R MASS/R/lqs.R MASS/R/isoMDS.R MASS/R/qda.R MASS/R/profiles.R MASS/R/gamma.shape.R MASS/R/stdres.R MASS/R/confint.R MASS/R/negbin.R MASS/R/lm.ridge.R MASS/R/dose.p.R MASS/R/kde2d.R MASS/R/rlm.R MASS/R/mvrnorm.R MASS/R/polr.R MASS/R/parcoord.R MASS/R/negexp.R MASS/R/enlist.R MASS/R/glmmPQL.R MASS/R/misc.R MASS/R/write.matrix.R MASS/R/add.R MASS/R/zzz.R MASS/R/ucv.R MASS/R/area.R MASS/R/boxcox.R MASS/MD5 MASS/DESCRIPTION MASS/man/ MASS/man/Insurance.Rd MASS/man/fractions.Rd MASS/man/sammon.Rd MASS/man/MASS-internal.Rd MASS/man/topo.Rd MASS/man/rnegbin.Rd MASS/man/road.Rd MASS/man/gamma.shape.glm.Rd MASS/man/glm.nb.Rd MASS/man/dropterm.Rd MASS/man/cabbages.Rd MASS/man/mammals.Rd MASS/man/kde2d.Rd MASS/man/galaxies.Rd MASS/man/housing.Rd MASS/man/synth.tr.Rd MASS/man/lm.gls.Rd MASS/man/chem.Rd MASS/man/eagles.Rd MASS/man/cpus.Rd MASS/man/ucv.Rd MASS/man/minn38.Rd MASS/man/bcv.Rd MASS/man/UScrime.Rd MASS/man/loglm1.Rd MASS/man/theta.md.Rd MASS/man/Pima.tr.Rd MASS/man/renumerate.Rd MASS/man/ginv.Rd MASS/man/width.SJ.Rd MASS/man/plot.mca.Rd MASS/man/Sitka.Rd MASS/man/eqscplot.Rd MASS/man/profile.glm.Rd MASS/man/mca.Rd MASS/man/anorexia.Rd MASS/man/whiteside.Rd MASS/man/motors.Rd MASS/man/farms.Rd MASS/man/predict.glmmPQL.Rd MASS/man/dose.p.Rd MASS/man/bacteria.Rd MASS/man/cats.Rd MASS/man/Null.Rd MASS/man/SP500.Rd MASS/man/parcoord.Rd MASS/man/DDT.Rd MASS/man/con2tr.Rd MASS/man/corresp.Rd MASS/man/biopsy.Rd MASS/man/denumerate.Rd MASS/man/genotype.Rd MASS/man/lm.ridge.Rd MASS/man/immer.Rd MASS/man/rlm.Rd MASS/man/predict.lqs.Rd MASS/man/Melanoma.Rd MASS/man/negative.binomial.Rd MASS/man/hist.scott.Rd MASS/man/lda.Rd MASS/man/accdeaths.Rd MASS/man/ldahist.Rd MASS/man/rms.curv.Rd MASS/man/mvrnorm.Rd MASS/man/shrimp.Rd MASS/man/survey.Rd MASS/man/Aids2.Rd MASS/man/cov.rob.Rd MASS/man/huber.Rd MASS/man/wtloss.Rd MASS/man/stdres.Rd MASS/man/ships.Rd MASS/man/OME.Rd MASS/man/stormer.Rd MASS/man/oats.Rd MASS/man/isoMDS.Rd MASS/man/confint.Rd MASS/man/truehist.Rd MASS/man/cement.Rd MASS/man/forbes.Rd MASS/man/Rubber.Rd MASS/man/predict.mca.Rd MASS/man/Rabbit.Rd MASS/man/hubers.Rd MASS/man/Sitka89.Rd MASS/man/painters.Rd MASS/man/lqs.Rd MASS/man/boxcox.Rd MASS/man/summary.loglm.Rd MASS/man/michelson.Rd MASS/man/drivers.Rd MASS/man/write.matrix.Rd MASS/man/gilgais.Rd MASS/man/glm.convert.Rd MASS/man/UScereal.Rd MASS/man/loglm.Rd MASS/man/glmmPQL.Rd MASS/man/logtrans.Rd MASS/man/nlschools.Rd MASS/man/anova.negbin.Rd MASS/man/muscle.Rd MASS/man/npk.Rd MASS/man/qda.Rd MASS/man/shuttle.Rd MASS/man/summary.negbin.Rd MASS/man/pairs.lda.Rd MASS/man/Cushings.Rd MASS/man/beav1.Rd MASS/man/phones.Rd MASS/man/polr.Rd MASS/man/coop.Rd MASS/man/geyser.Rd MASS/man/fitdistr.Rd MASS/man/plot.profile.Rd MASS/man/birthwt.Rd MASS/man/cov.trob.Rd MASS/man/leuk.Rd MASS/man/caith.Rd MASS/man/hills.Rd MASS/man/rational.Rd MASS/man/fgl.Rd MASS/man/Skye.Rd MASS/man/newcomb.Rd MASS/man/mcycle.Rd MASS/man/waders.Rd MASS/man/abbey.Rd MASS/man/menarche.Rd MASS/man/deaths.Rd MASS/man/gehan.Rd MASS/man/gamma.dispersion.Rd MASS/man/snails.Rd MASS/man/npr1.Rd MASS/man/GAGurine.Rd MASS/man/VA.Rd MASS/man/Cars93.Rd MASS/man/rotifer.Rd MASS/man/epil.Rd MASS/man/crabs.Rd MASS/man/contr.sdif.Rd MASS/man/predict.qda.Rd MASS/man/quine.Rd MASS/man/Boston.Rd MASS/man/addterm.Rd MASS/man/bandwidth.nrd.Rd MASS/man/studres.Rd MASS/man/shoes.Rd MASS/man/Animals.Rd MASS/man/steam.Rd MASS/man/stepAIC.Rd MASS/man/beav2.Rd MASS/man/Traffic.Rd MASS/man/area.Rd MASS/man/predict.lda.Rd MASS/man/summary.rlm.Rd MASS/man/petrol.Rd MASS/man/plot.lda.Rd MASS/LICENCE.note MASS/INDEX sudo -u fink-bld [ENV] sh -c /tmp/fink.nm5Do /tmp/fink.biRCg #!/bin/sh -ev export TMPDIR=/sw/build.build/cran-mass-r31-7.3-32-2/MASS/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R pushd .. /sw/build.build/cran-mass-r31-7.3-32-2 /sw/build.build/cran-mass-r31-7.3-32-2/MASS $BIN_R --verbose CMD build --no-build-vignettes MASS * checking for file 'MASS/DESCRIPTION' ... OK * preparing 'MASS': * checking DESCRIPTION meta-information ... OK * cleaning src * checking whether 'INDEX' is up-to-date ... NO * use '--force' to remove the existing 'INDEX' * checking for LF line-endings in source and make files * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added * building 'MASS_7.3-32.tar.gz' /bin/rm -rf /sw/build.build/root-cran-mass-r31-7.3-32-2 /bin/mkdir -p /sw/build.build/root-cran-mass-r31-7.3-32-2/sw /bin/mkdir -p /sw/build.build/root-cran-mass-r31-7.3-32-2/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-mass-r31-7.3-32-2 sudo -u fink-bld [ENV] sh -c /tmp/fink.7oztZ /tmp/fink.LDvU1 #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R mkdir -p /sw/build.build/root-cran-mass-r31-7.3-32-2/sw/lib/R/3.1/site-library pushd /sw/build.build/cran-mass-r31-7.3-32-2/MASS/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-mass-r31-7.3-32-2/sw/lib/R/3.1/site-library MASS /sw/build.build/cran-mass-r31-7.3-32-2 /sw/build.build/cran-mass-r31-7.3-32-2/MASS * installing *source* package 'MASS' ... ** package 'MASS' successfully unpacked and MD5 sums checked ** libs flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c MASS.c -o MASS.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c lqs.c -o lqs.o flag-sort -r gcc -ffor-scope -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib -o MASS.dylib MASS.o lqs.o -L/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation installing to /sw/build.build/root-cran-mass-r31-7.3-32-2/sw/lib/R/3.1/site-library/MASS/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (MASS) install_name_tool -id /sw/lib/R/3.1/site-library/MASS/libs/MASS.dylib /sw/build.build/root-cran-mass-r31-7.3-32-2/sw/lib/R/3.1/site-library/MASS/libs/MASS.dylib sudo -u fink-bld [ENV] sh -c /tmp/fink.B6oQw /bin/rm -f /sw/build.build/root-cran-mass-r31-7.3-32-2/sw/info/dir /sw/build.build/root-cran-mass-r31-7.3-32-2/sw/info/dir.old /sw/build.build/root-cran-mass-r31-7.3-32-2/sw/share/info/dir /sw/build.build/root-cran-mass-r31-7.3-32-2/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-mass-r31-7.3-32-2 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-mass-r31' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-mass-r31_7.3-32-2_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-mass-r31-7.3-32-2 (Reading database ... 9504 files and directories currently installed.) Removing fink-buildlock-cran-mass-r31-7.3-32-2 ...