printf ' ' | fink --no-use-binary-dist --yes rebuild cran-matrix-r30 2>&1 The package 'cran-matrix-r30' will be built without being installed. Reading build dependency for cran-matrix-r30-1.1-3-2... Reading dependency for cran-matrix-r30-1.1-3-2... Reading dependency for cran-matrix-r30-dev-1.1-3-2... Reading build conflict for cran-matrix-r30-1.1-3-2... The following package will be rebuilt: cran-matrix-r30 Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-matrix-r30-1.1-3-2 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-matrix-r30-1.1-3-2' in `/sw/build.build/fink-buildlock-cran-matrix-r30-1.1-3-2_2014.07.27-11.21.00_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-matrix-r30-1.1-3-2_2014.07.27-11.21.00_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-matrix-r30-1.1-3-2. (Reading database ... 7384 files and directories currently installed.) Unpacking fink-buildlock-cran-matrix-r30-1.1-3-2 (from .../fink-buildlock-cran-matrix-r30-1.1-3-2_2014.07.27-11.21.00_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-matrix-r30-1.1-3-2 (2014.07.27-11.21.00) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.vO4kC env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/Matrix_1.1-3.tar.gz Matrix/ Matrix/TODO Matrix/po/ Matrix/po/update-me.sh Matrix/po/R-Matrix.pot Matrix/po/R-fr.po Matrix/po/de.po Matrix/po/Matrix.pot Matrix/po/pl.po Matrix/po/R-de.po Matrix/po/fr.po Matrix/po/R-en@quot.po Matrix/po/en@quot.po Matrix/po/R-pl.po Matrix/inst/ Matrix/inst/po/ Matrix/inst/po/pl/ Matrix/inst/po/pl/LC_MESSAGES/ Matrix/inst/po/pl/LC_MESSAGES/Matrix.mo Matrix/inst/po/pl/LC_MESSAGES/R-Matrix.mo Matrix/inst/po/en@quot/ Matrix/inst/po/en@quot/LC_MESSAGES/ Matrix/inst/po/en@quot/LC_MESSAGES/Matrix.mo Matrix/inst/po/en@quot/LC_MESSAGES/R-Matrix.mo Matrix/inst/po/fr/ Matrix/inst/po/fr/LC_MESSAGES/ Matrix/inst/po/fr/LC_MESSAGES/R-Matrix.mo Matrix/inst/po/de/ Matrix/inst/po/de/LC_MESSAGES/ Matrix/inst/po/de/LC_MESSAGES/Matrix.mo Matrix/inst/po/de/LC_MESSAGES/R-Matrix.mo Matrix/inst/test-tools.R Matrix/inst/test-tools-1.R Matrix/inst/test-tools-Matrix.R Matrix/inst/Copyrights Matrix/inst/doc/ Matrix/inst/doc/Announce.txt Matrix/inst/doc/Comparisons.pdf Matrix/inst/doc/sparseModels.pdf Matrix/inst/doc/Introduction.pdf Matrix/inst/doc/Intro2Matrix.pdf Matrix/inst/doc/Design-issues.pdf Matrix/inst/doc/SuiteSparse/ Matrix/inst/doc/SuiteSparse/UserGuides.txt Matrix/inst/doc/SuiteSparse/AMD.txt Matrix/inst/doc/SuiteSparse/COLAMD.txt Matrix/inst/doc/SuiteSparse/CHOLMOD.txt Matrix/inst/doc/SuiteSparse/SPQR.txt Matrix/inst/doc/SuiteSparse/SuiteSparse_config.txt Matrix/inst/external/ Matrix/inst/external/symA.rda Matrix/inst/external/KNex_slots.rda Matrix/inst/external/wrong.mtx Matrix/inst/external/lund_a.rsa Matrix/inst/external/test3comp.rda Matrix/inst/external/lund_a.mtx Matrix/inst/external/pores_1.mtx Matrix/inst/external/USCounties_slots.rda Matrix/inst/external/CAex_slots.rda Matrix/inst/external/symW.rda Matrix/inst/external/utm300.rua Matrix/inst/Doxyfile Matrix/inst/include/ Matrix/inst/include/cholmod.h Matrix/inst/include/Matrix.h Matrix/inst/include/Matrix_stubs.c Matrix/tests/ Matrix/tests/matprod.R Matrix/tests/Class+Meth.R Matrix/tests/matr-exp.R Matrix/tests/dpo-test.R Matrix/tests/spModel.matrix.R Matrix/tests/indexing.Rout.save Matrix/tests/dtpMatrix.R Matrix/tests/indexing.R Matrix/tests/base-matrix-fun.R Matrix/tests/Simple.R Matrix/tests/bind.Rout.save Matrix/tests/abIndex-tsts.R Matrix/tests/bind.R Matrix/tests/validObj.R Matrix/tests/dg_Matrix.R Matrix/tests/factorizing.R Matrix/tests/other-pkgs.R Matrix/tests/group-methods.R Matrix/tests/write-read.R Matrix/src/ Matrix/src/Mutils.c Matrix/src/ldense.h Matrix/src/dense.h Matrix/src/Makevars Matrix/src/Csparse.c Matrix/src/dtpMatrix.h Matrix/src/dgTMatrix.h Matrix/src/Tsparse.c Matrix/src/dgeMatrix.h Matrix/src/CHMfactor.h Matrix/src/dppMatrix.c Matrix/src/CHMfactor.c Matrix/src/dtCMatrix.c Matrix/src/dpoMatrix.h Matrix/src/ldense.c Matrix/src/Tsparse.h Matrix/src/abIndex.c Matrix/src/dgCMatrix.c Matrix/src/t_gCMatrix_colSums.c Matrix/src/dsyMatrix.c Matrix/src/scripts/ Matrix/src/scripts/0get-SuiteSparse.sh Matrix/src/scripts/DEPS.mkf Matrix/src/scripts/SOURCES_C.mkf Matrix/src/scripts/fixup-fn.R Matrix/src/scripts/DEPS.mkf_make.sh Matrix/src/cs_utils.h Matrix/src/Mutils.h Matrix/src/lgCMatrix.h Matrix/src/dtpMatrix.c Matrix/src/Csparse.h Matrix/src/dppMatrix.h Matrix/src/dtTMatrix.h Matrix/src/chm_common.h Matrix/src/CHOLMOD/ Matrix/src/CHOLMOD/Makefile Matrix/src/CHOLMOD/Modify/ Matrix/src/CHOLMOD/Modify/License.txt Matrix/src/CHOLMOD/Modify/t_cholmod_updown_numkr.c Matrix/src/CHOLMOD/Modify/cholmod_updown.c Matrix/src/CHOLMOD/Modify/t_cholmod_updown.c Matrix/src/CHOLMOD/Modify/cholmod_rowdel.c Matrix/src/CHOLMOD/Modify/cholmod_rowadd.c Matrix/src/CHOLMOD/Cholesky/ Matrix/src/CHOLMOD/Cholesky/cholmod_colamd.c Matrix/src/CHOLMOD/Cholesky/License.txt Matrix/src/CHOLMOD/Cholesky/t_cholmod_lsolve.c Matrix/src/CHOLMOD/Cholesky/debug_c Matrix/src/CHOLMOD/Cholesky/cholmod_etree.c Matrix/src/CHOLMOD/Cholesky/cholmod_resymbol.c Matrix/src/CHOLMOD/Cholesky/t_cholmod_ltsolve.c Matrix/src/CHOLMOD/Cholesky/cholmod_rowfac.c Matrix/src/CHOLMOD/Cholesky/cholmod_solve.c Matrix/src/CHOLMOD/Cholesky/cholmod_rcond.c Matrix/src/CHOLMOD/Cholesky/cholmod_spsolve.c Matrix/src/CHOLMOD/Cholesky/cholmod_amd.c Matrix/src/CHOLMOD/Cholesky/cholmod_factorize.c Matrix/src/CHOLMOD/Cholesky/cholmod_postorder.c Matrix/src/CHOLMOD/Cholesky/cholmod_analyze.c Matrix/src/CHOLMOD/Cholesky/cholmod_rowcolcounts.c Matrix/src/CHOLMOD/Cholesky/t_cholmod_rowfac.c Matrix/src/CHOLMOD/Cholesky/t_cholmod_solve.c Matrix/src/CHOLMOD/Lib/ Matrix/src/CHOLMOD/Lib/Makefile Matrix/src/CHOLMOD/Check/ Matrix/src/CHOLMOD/Check/License.txt Matrix/src/CHOLMOD/Check/cholmod_write.c Matrix/src/CHOLMOD/Check/cholmod_check.c Matrix/src/CHOLMOD/Check/cholmod_read.c Matrix/src/CHOLMOD/Supernodal/ Matrix/src/CHOLMOD/Supernodal/cholmod_super_symbolic.c Matrix/src/CHOLMOD/Supernodal/License.txt Matrix/src/CHOLMOD/Supernodal/t_cholmod_gpu.c Matrix/src/CHOLMOD/Supernodal/t_cholmod_super_numeric.c Matrix/src/CHOLMOD/Supernodal/cholmod_super_solve.c Matrix/src/CHOLMOD/Supernodal/cholmod_super_numeric.c Matrix/src/CHOLMOD/Supernodal/t_cholmod_super_solve.c Matrix/src/CHOLMOD/Partition/ Matrix/src/CHOLMOD/Partition/License.txt Matrix/src/CHOLMOD/Partition/cholmod_nesdis.c Matrix/src/CHOLMOD/Partition/cholmod_csymamd.c Matrix/src/CHOLMOD/Partition/cholmod_camd.c Matrix/src/CHOLMOD/Partition/cholmod_ccolamd.c Matrix/src/CHOLMOD/Partition/cholmod_metis.c Matrix/src/CHOLMOD/Core/ Matrix/src/CHOLMOD/Core/cholmod_change_factor.c Matrix/src/CHOLMOD/Core/cholmod_aat.c Matrix/src/CHOLMOD/Core/License.txt Matrix/src/CHOLMOD/Core/cholmod_transpose.c Matrix/src/CHOLMOD/Core/cholmod_add.c Matrix/src/CHOLMOD/Core/cholmod_copy.c Matrix/src/CHOLMOD/Core/cholmod_dense.c Matrix/src/CHOLMOD/Core/t_cholmod_change_factor.c Matrix/src/CHOLMOD/Core/t_cholmod_dense.c Matrix/src/CHOLMOD/Core/cholmod_common.c Matrix/src/CHOLMOD/Core/cholmod_triplet.c Matrix/src/CHOLMOD/Core/cholmod_error.c Matrix/src/CHOLMOD/Core/cholmod_version.c Matrix/src/CHOLMOD/Core/cholmod_memory.c Matrix/src/CHOLMOD/Core/cholmod_complex.c Matrix/src/CHOLMOD/Core/t_cholmod_transpose.c Matrix/src/CHOLMOD/Core/cholmod_factor.c Matrix/src/CHOLMOD/Core/t_cholmod_triplet.c Matrix/src/CHOLMOD/Core/cholmod_sparse.c Matrix/src/CHOLMOD/Core/cholmod_band.c Matrix/src/CHOLMOD/MatrixOps/ Matrix/src/CHOLMOD/MatrixOps/cholmod_norm.c Matrix/src/CHOLMOD/MatrixOps/License.txt Matrix/src/CHOLMOD/MatrixOps/t_cholmod_sdmult.c Matrix/src/CHOLMOD/MatrixOps/cholmod_submatrix.c Matrix/src/CHOLMOD/MatrixOps/cholmod_sdmult.c Matrix/src/CHOLMOD/MatrixOps/cholmod_horzcat.c Matrix/src/CHOLMOD/MatrixOps/cholmod_symmetry.c Matrix/src/CHOLMOD/MatrixOps/cholmod_scale.c Matrix/src/CHOLMOD/MatrixOps/cholmod_drop.c Matrix/src/CHOLMOD/MatrixOps/cholmod_vertcat.c Matrix/src/CHOLMOD/MatrixOps/cholmod_ssmult.c Matrix/src/CHOLMOD/Include/ Matrix/src/CHOLMOD/Include/cholmod.h Matrix/src/CHOLMOD/Include/License.txt Matrix/src/CHOLMOD/Include/cholmod_modify.h Matrix/src/CHOLMOD/Include/cholmod_complexity.h Matrix/src/CHOLMOD/Include/cholmod_io64.h Matrix/src/CHOLMOD/Include/cholmod_camd.h Matrix/src/CHOLMOD/Include/cholmod_blas.h Matrix/src/CHOLMOD/Include/cholmod_matrixops.h Matrix/src/CHOLMOD/Include/cholmod_internal.h Matrix/src/CHOLMOD/Include/cholmod_config.h Matrix/src/CHOLMOD/Include/cholmod_template.h Matrix/src/CHOLMOD/Include/cholmod_core.h Matrix/src/CHOLMOD/Include/cholmod_supernodal.h Matrix/src/CHOLMOD/Include/cholmod_cholesky.h Matrix/src/CHOLMOD/Include/README.txt Matrix/src/CHOLMOD/Include/cholmod_check.h Matrix/src/CHOLMOD/Include/cholmod_partition.h Matrix/src/dtCMatrix.h Matrix/src/factorizations.h Matrix/src/dsyMatrix.h Matrix/src/dtrMatrix.c Matrix/src/factorizations.c Matrix/src/sparseQR.h Matrix/src/dsCMatrix.c Matrix/src/dspMatrix.c Matrix/src/lgCMatrix.c Matrix/src/SuiteSparse_config/ Matrix/src/SuiteSparse_config/Makefile Matrix/src/SuiteSparse_config/SuiteSparse_config.c Matrix/src/SuiteSparse_config/SuiteSparse_config.h Matrix/src/SuiteSparse_config/SuiteSparse_config.mk Matrix/src/cs.h Matrix/src/TMatrix_as.c Matrix/src/dgeMatrix.c Matrix/src/t_Matrix_rle.c Matrix/src/dense.c Matrix/src/chm_common.c Matrix/src/abIndex.h Matrix/src/AMD/ Matrix/src/AMD/Source/ Matrix/src/AMD/Source/amd_global.c Matrix/src/AMD/Source/Makefile Matrix/src/AMD/Source/amd_aat.c Matrix/src/AMD/Source/amd_info.c Matrix/src/AMD/Source/amd_preprocess.c Matrix/src/AMD/Source/amd_postorder.c Matrix/src/AMD/Source/make-Make.R Matrix/src/AMD/Source/amd_control.c Matrix/src/AMD/Source/make_o.mk Matrix/src/AMD/Source/amd_order.c Matrix/src/AMD/Source/amd_dump.c Matrix/src/AMD/Source/amd_defaults.c Matrix/src/AMD/Source/amd_valid.c Matrix/src/AMD/Source/amd_1.c Matrix/src/AMD/Source/amd_2.c Matrix/src/AMD/Source/amd_post_tree.c Matrix/src/AMD/Makefile Matrix/src/AMD/Include/ Matrix/src/AMD/Include/amd.h Matrix/src/AMD/Include/amd_internal.h Matrix/src/Syms.h Matrix/src/init.c Matrix/src/COLAMD/ Matrix/src/COLAMD/Source/ Matrix/src/COLAMD/Source/colamd.c Matrix/src/COLAMD/Source/Makefile Matrix/src/COLAMD/Source/colamd_global.c Matrix/src/COLAMD/Makefile Matrix/src/COLAMD/Include/ Matrix/src/COLAMD/Include/colamd.h Matrix/src/sparseQR.c Matrix/src/t_sparseVector.c Matrix/src/TMatrix_as.h Matrix/src/dgCMatrix.h Matrix/src/cs_utils.c Matrix/src/dtTMatrix.c Matrix/src/t_Csparse_subassign.c Matrix/src/dspMatrix.h Matrix/src/dpoMatrix.c Matrix/src/t_Csparse_validate.c Matrix/src/dgTMatrix.c Matrix/src/dtrMatrix.h Matrix/src/dsCMatrix.h Matrix/src/cs.c Matrix/NAMESPACE Matrix/data/ Matrix/data/KNex.R Matrix/data/CAex.R Matrix/data/USCounties.R Matrix/R/ Matrix/R/HBMM.R Matrix/R/lsCMatrix.R Matrix/R/sparseVector.R Matrix/R/Csparse.R Matrix/R/bind2.R Matrix/R/Auxiliaries.R Matrix/R/dsparseMatrix.R Matrix/R/denseMatrix.R Matrix/R/Hilbert.R Matrix/R/ddenseMatrix.R Matrix/R/triangularMatrix.R Matrix/R/dgCMatrix.R Matrix/R/bandSparse.R Matrix/R/MatrixFactorization.R Matrix/R/dtpMatrix.R Matrix/R/lsTMatrix.R Matrix/R/ntCMatrix.R Matrix/R/nsparseMatrix.R Matrix/R/pMatrix.R Matrix/R/dppMatrix.R Matrix/R/diagMatrix.R Matrix/R/AllClass.R Matrix/R/sparseMatrix.R Matrix/R/corMatrix.R Matrix/R/spModels.R Matrix/R/kronecker.R Matrix/R/nnzero.R Matrix/R/lMatrix.R Matrix/R/dsTMatrix.R Matrix/R/colSums.R Matrix/R/not.R Matrix/R/KhatriRao.R Matrix/R/products.R Matrix/R/indMatrix.R Matrix/R/abIndex.R Matrix/R/dgTMatrix.R Matrix/R/ngTMatrix.R Matrix/R/condest.R Matrix/R/CHMfactor.R Matrix/R/dtTMatrix.R Matrix/R/Tsparse.R Matrix/R/nsCMatrix.R Matrix/R/lsparseMatrix.R Matrix/R/Matrix.R Matrix/R/ltCMatrix.R Matrix/R/rankMatrix.R Matrix/R/dpoMatrix.R Matrix/R/dspMatrix.R Matrix/R/nearPD.R Matrix/R/ndenseMatrix.R Matrix/R/AllGeneric.R Matrix/R/ntTMatrix.R Matrix/R/SparseM-conv.R Matrix/R/dgeMatrix.R Matrix/R/dtrMatrix.R Matrix/R/ltTMatrix.R Matrix/R/Ops.R Matrix/R/dsyMatrix.R Matrix/R/dMatrix.R Matrix/R/lgTMatrix.R Matrix/R/ldenseMatrix.R Matrix/R/nsTMatrix.R Matrix/R/LU.R Matrix/R/expm.R Matrix/R/sparseQR.R Matrix/R/dtCMatrix.R Matrix/R/zzz.R Matrix/R/eigen.R Matrix/R/dsCMatrix.R Matrix/R/ngCMatrix.R Matrix/R/lgCMatrix.R Matrix/R/Rsparse.R Matrix/R/symmetricMatrix.R Matrix/vignettes/ Matrix/vignettes/Design-issues.Rnw Matrix/vignettes/Intro2Matrix.Rnw Matrix/vignettes/sparseModels.Rnw Matrix/vignettes/myVignette.sty Matrix/vignettes/Introduction.Rnw Matrix/vignettes/Comparisons.Rnw Matrix/vignettes/Matrix.bib Matrix/vignettes/fullpage.sty Matrix/MD5 Matrix/DESCRIPTION Matrix/ChangeLog Matrix/man/ Matrix/man/nMatrix-class.Rd Matrix/man/MatrixFactorization-class.Rd Matrix/man/facmul.Rd Matrix/man/lsparseMatrix-classes.Rd Matrix/man/dtpMatrix-class.Rd Matrix/man/ldenseMatrix-class.Rd Matrix/man/dtCMatrix-class.Rd Matrix/man/symmetricMatrix-class.Rd Matrix/man/solve-methods.Rd Matrix/man/sparseVector.Rd Matrix/man/chol.Rd Matrix/man/index-class.Rd Matrix/man/atomicVector-class.Rd Matrix/man/rep2abI.Rd Matrix/man/pMatrix-class.Rd Matrix/man/forceSymmetric.Rd Matrix/man/Xtrct-methods.Rd Matrix/man/triangularMatrix-class.Rd Matrix/man/ldiMatrix-class.Rd Matrix/man/lgeMatrix-class.Rd Matrix/man/all-methods.Rd Matrix/man/norm.Rd Matrix/man/Hilbert.Rd Matrix/man/nnzero.Rd Matrix/man/dtrMatrix-class.Rd Matrix/man/abIndex-class.Rd Matrix/man/sparseMatrix-class.Rd Matrix/man/bandSparse.Rd Matrix/man/graph2T.Rd Matrix/man/TsparseMatrix-class.Rd Matrix/man/colSums.Rd Matrix/man/formatSparseM.Rd Matrix/man/dsyMatrix-class.Rd Matrix/man/chol2inv-methods.Rd Matrix/man/number-class.Rd Matrix/man/nsyMatrix-class.Rd Matrix/man/indMatrix-class.Rd Matrix/man/lsyMatrix-class.Rd Matrix/man/rankMatrix.Rd Matrix/man/ntrMatrix-class.Rd Matrix/man/CsparseMatrix-class.Rd Matrix/man/LU-class.Rd Matrix/man/all.equal-methods.Rd Matrix/man/KNex.Rd Matrix/man/is.na-methods.Rd Matrix/man/nearPD.Rd Matrix/man/dsCMatrix-class.Rd Matrix/man/BunchKaufman-methods.Rd Matrix/man/replValue-class.Rd Matrix/man/dgCMatrix-class.Rd Matrix/man/Schur.Rd Matrix/man/condest.Rd Matrix/man/SparseM-conv.Rd Matrix/man/qr-methods.Rd Matrix/man/ddiMatrix-class.Rd Matrix/man/RsparseMatrix-class.Rd Matrix/man/generalMatrix-class.Rd Matrix/man/CHMfactor-class.Rd Matrix/man/CAex.Rd Matrix/man/image-methods.Rd Matrix/man/Subassign-methods.Rd Matrix/man/sparseLU-class.Rd Matrix/man/dgeMatrix-class.Rd Matrix/man/sparseVector-class.Rd Matrix/man/externalFormats.Rd Matrix/man/ddenseMatrix-class.Rd Matrix/man/Matrix.Rd Matrix/man/isTriangular.Rd Matrix/man/band.Rd Matrix/man/rleDiff-class.Rd Matrix/man/symmpart.Rd Matrix/man/ngeMatrix-class.Rd Matrix/man/Matrix-class.Rd Matrix/man/matrix-products.Rd Matrix/man/dsparseMatrix-class.Rd Matrix/man/dMatrix-class.Rd Matrix/man/kronecker-methods.Rd Matrix/man/abIseq.Rd Matrix/man/nsparseMatrix-classes.Rd Matrix/man/sparseMatrix.Rd Matrix/man/ndenseMatrix-class.Rd Matrix/man/Schur-class.Rd Matrix/man/lu.Rd Matrix/man/compMatrix-class.Rd Matrix/man/dgTMatrix-class.Rd Matrix/man/is.null.DN.Rd Matrix/man/cBind.Rd Matrix/man/Cholesky.Rd Matrix/man/Diagonal.Rd Matrix/man/dpoMatrix-class.Rd Matrix/man/isSymmetric-methods.Rd Matrix/man/diagonalMatrix-class.Rd Matrix/man/bdiag.Rd Matrix/man/updown.Rd Matrix/man/invPerm.Rd Matrix/man/rcond.Rd Matrix/man/sparse.model.matrix.Rd Matrix/man/expand.Rd Matrix/man/KhatriRao.Rd Matrix/man/expm.Rd Matrix/man/denseMatrix-class.Rd Matrix/man/diagU2N.Rd Matrix/man/USCounties.Rd Matrix/man/spMatrix.Rd Matrix/man/printSpMatrix.Rd Matrix/man/drop0.Rd Matrix/man/Cholesky-class.Rd Matrix/man/dgRMatrix-class.Rd Matrix/man/unpack.Rd Matrix/man/dsRMatrix-class.Rd Matrix/man/sparseQR-class.Rd Matrix/man/unused-classes.Rd Matrix/man/dtRMatrix-class-def.Rd Matrix/man/ltrMatrix-class.Rd Matrix/cleanup Matrix/.Rinstignore sudo -u fink-bld [ENV] sh -c /tmp/fink.FpaIR /tmp/fink.xnEdF #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-matrix-r30-1.1-3-2/Matrix/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R pushd .. /sw/build.build/cran-matrix-r30-1.1-3-2 /sw/build.build/cran-matrix-r30-1.1-3-2/Matrix if [[ 3.0 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes Matrix else $BIN_R --verbose CMD build --no-vignettes Matrix fi * checking for file 'Matrix/DESCRIPTION' ... OK * preparing 'Matrix': * checking DESCRIPTION meta-information ... OK * cleaning src * running 'cleanup' * checking for LF line-endings in source and make files * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added * building 'Matrix_1.1-3.tar.gz' /bin/rm -rf /sw/build.build/root-cran-matrix-r30-1.1-3-2 /bin/mkdir -p /sw/build.build/root-cran-matrix-r30-1.1-3-2/sw /bin/mkdir -p /sw/build.build/root-cran-matrix-r30-1.1-3-2/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-matrix-r30-1.1-3-2 sudo -u fink-bld [ENV] sh -c /tmp/fink.bCFKD /tmp/fink.VbxFl #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R mkdir -p /sw/build.build/root-cran-matrix-r30-1.1-3-2/sw/lib/R/3.0/site-library pushd /sw/build.build/cran-matrix-r30-1.1-3-2/Matrix/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-matrix-r30-1.1-3-2/sw/lib/R/3.0/site-library Matrix /sw/build.build/cran-matrix-r30-1.1-3-2 /sw/build.build/cran-matrix-r30-1.1-3-2/Matrix * installing *source* package 'Matrix' ... ** package 'Matrix' successfully unpacked and MD5 sums checked ** libs flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c CHMfactor.c -o CHMfactor.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c Csparse.c -o Csparse.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c TMatrix_as.c -o TMatrix_as.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c Tsparse.c -o Tsparse.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c init.c -o init.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c Mutils.c -o Mutils.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c chm_common.c -o chm_common.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c cs.c -o cs.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c cs_utils.c -o cs_utils.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c dense.c -o dense.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c dgCMatrix.c -o dgCMatrix.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c dgTMatrix.c -o dgTMatrix.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c dgeMatrix.c -o dgeMatrix.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c dpoMatrix.c -o dpoMatrix.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c dppMatrix.c -o dppMatrix.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c dsCMatrix.c -o dsCMatrix.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c dsyMatrix.c -o dsyMatrix.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c dspMatrix.c -o dspMatrix.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c dtCMatrix.c -o dtCMatrix.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c dtTMatrix.c -o dtTMatrix.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c dtrMatrix.c -o dtrMatrix.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c dtpMatrix.c -o dtpMatrix.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c factorizations.c -o factorizations.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c ldense.c -o ldense.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c lgCMatrix.c -o lgCMatrix.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c sparseQR.c -o sparseQR.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/sw/include -fPIC -g -O3 -c abIndex.c -o abIndex.o ( cd Lib ; make clean ) ( cd Source ; make clean ) ( cd Source ; make clean ) ( cd Lib ; make ) flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Core/cholmod_aat.c -o cholmod_aat.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Core/cholmod_add.c -o cholmod_add.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Core/cholmod_band.c -o cholmod_band.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Core/cholmod_common.c -o cholmod_common.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Core/cholmod_complex.c -o cholmod_complex.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Core/cholmod_copy.c -o cholmod_copy.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Core/cholmod_dense.c -o cholmod_dense.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Core/cholmod_error.c -o cholmod_error.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Core/cholmod_factor.c -o cholmod_factor.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Core/cholmod_memory.c -o cholmod_memory.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Core/cholmod_sparse.c -o cholmod_sparse.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Core/cholmod_transpose.c -o cholmod_transpose.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Core/cholmod_triplet.c -o cholmod_triplet.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Core/cholmod_version.c -o cholmod_version.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Check/cholmod_check.c -o cholmod_check.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Check/cholmod_read.c -o cholmod_read.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Check/cholmod_write.c -o cholmod_write.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Modify/cholmod_updown.c -o cholmod_updown.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Core/cholmod_aat.c -o cholmod_l_aat.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Core/cholmod_add.c -o cholmod_l_add.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Core/cholmod_band.c -o cholmod_l_band.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Core/cholmod_common.c -o cholmod_l_common.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Core/cholmod_complex.c -o cholmod_l_complex.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Core/cholmod_copy.c -o cholmod_l_copy.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Core/cholmod_dense.c -o cholmod_l_dense.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Core/cholmod_error.c -o cholmod_l_error.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Core/cholmod_factor.c -o cholmod_l_factor.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Core/cholmod_memory.c -o cholmod_l_memory.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Core/cholmod_sparse.c -o cholmod_l_sparse.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Core/cholmod_transpose.c -o cholmod_l_transpose.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Core/cholmod_triplet.c -o cholmod_l_triplet.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Core/cholmod_version.c -o cholmod_l_version.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Check/cholmod_check.c -o cholmod_l_check.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Check/cholmod_read.c -o cholmod_l_read.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Check/cholmod_write.c -o cholmod_l_write.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Modify/cholmod_updown.c -o cholmod_l_updown.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -I/sw/include -fPIC -g -O3 -DDLONG -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o ( cd Source ; make lib ) flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -c colamd_global.c -o colamd_global.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -c colamd.c -o colamd.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDLONG -c colamd.c -o colamd_l.o ar -rucs ../../COLAMD.a colamd_global.o colamd.o colamd_l.o ( cd Source ; make lib ) flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDINT -c amd_1.c -o amd_i_1.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDLONG -c amd_1.c -o amd_l_1.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDINT -c amd_2.c -o amd_i_2.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDLONG -c amd_2.c -o amd_l_2.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDINT -c amd_order.c -o amd_i_order.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDLONG -c amd_order.c -o amd_l_order.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDINT -c amd_control.c -o amd_i_control.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDLONG -c amd_control.c -o amd_l_control.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDINT -c amd_info.c -o amd_i_info.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDLONG -c amd_info.c -o amd_l_info.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDINT -c amd_global.c -o amd_i_global.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I../Include -I../../SuiteSparse_config -I/sw/include -fPIC -g -O3 -I../Include -DDLONG -c amd_global.c -o amd_l_global.o ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o amd_i_global.o amd_l_global.o /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: ../../AMD.a(amd_i_dump.o) has no symbols /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: ../../AMD.a(amd_l_dump.o) has no symbols flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DNTIMER -I/sw/include -fPIC -g -O3 -c SuiteSparse_config.c -o SuiteSparse_config.o ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o flag-sort -r gcc -ffor-scope -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib -o Matrix.dylib CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -framework Accelerate -framework Accelerate -L/sw/lib/gcc4.9/lib/gcc/x86_64-apple-darwin13.3.0/4.9.1 -L/sw/lib/gcc4.9/lib -lgfortran -lquadmath -lm -L/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation ld: warning: directory not found for option '-L/sw/lib/gcc4.9/lib/gcc/x86_64-apple-darwin13.3.0/4.9.1' ld: library not found for -lgfortran clang: error: linker command failed with exit code 1 (use -v to see invocation) make: *** [Matrix.dylib] Error 1 ERROR: compilation failed for package 'Matrix' * removing '/sw/build.build/root-cran-matrix-r30-1.1-3-2/sw/lib/R/3.0/site-library/Matrix' ### execution of /tmp/fink.VbxFl failed, exit code 1 ### execution of /tmp/fink.bCFKD failed, exit code 1 Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-matrix-r30-1.1-3-2 (Reading database ... 7385 files and directories currently installed.) Removing fink-buildlock-cran-matrix-r30-1.1-3-2 ... Failed: phase installing: cran-matrix-r30-1.1-3-2 failed Before reporting any errors, please run "fink selfupdate" and try again. Also try using "fink configure" to set your maximum build jobs to 1 and attempt to build the package again. If you continue to have issues, please check to see if the FAQ on Fink's website solves the problem. If not, ask on one (not both, please) of these mailing lists: The Fink Users List The Fink Beginners List , with a carbon copy to the maintainer: Jack Howarth Note that this is preferable to emailing just the maintainer directly, since most fink package maintainers do not have access to all possible hardware and software configurations. Please try to include the complete error message in your report. This generally consists of a compiler line starting with e.g. "gcc" or "g++" followed by the actual error output from the compiler. Also include the following system information: Package manager version: 0.37.0 Distribution version: selfupdate-cvs Thu Jul 24 20:26:24 2014, 10.9, x86_64 Trees: local/main stable/main Xcode.app: 5.1.1 Xcode command-line tools: 6.0.0.0.1.1405597879 Max. Fink build jobs: 8