printf '

' | fink --no-use-binary-dist --yes  --build-as-nobody rebuild cran-matrixcalc-r30 2>&1
The package 'cran-matrixcalc-r30' will be built without being installed.
Reading build dependency for cran-matrixcalc-r30-1.0-3-1...
Reading dependency for cran-matrixcalc-r30-1.0-3-1...
Reading build conflict for cran-matrixcalc-r30-1.0-3-1...
The package 'r-base30-dev' will be installed.
Reading dependency for r-base30-dev-3.0.3-8...
Reading runtime dependency for r-base30-dev-3.0.3-8...
The package 'r-base30' will be installed.
Reading dependency for r-base30-3.0.3-8...
Reading runtime dependency for r-base30-3.0.3-8...
The package 'r-base30-shlibs' will be installed.
Reading dependency for r-base30-shlibs-3.0.3-8...
Reading runtime dependency for r-base30-shlibs-3.0.3-8...
The package 'flag-sort' will be installed.
Reading dependency for flag-sort-0.5-1...
Reading runtime dependency for flag-sort-0.5-1...
The package 'cairo-shlibs' will be installed.
Reading dependency for cairo-shlibs-1.12.14-1...
Reading runtime dependency for cairo-shlibs-1.12.14-1...
The package 'gcc49-shlibs' will be installed.
Reading dependency for gcc49-shlibs-4.9.1-1000...
Reading runtime dependency for gcc49-shlibs-4.9.1-1000...
The package 'glib2-shlibs' will be installed.
Reading dependency for glib2-shlibs-2.22.4-8...
Reading runtime dependency for glib2-shlibs-2.22.4-8...
The package 'libicu48-shlibs' will be installed.
Reading dependency for libicu48-shlibs-4.8.1.1-2...
Reading runtime dependency for libicu48-shlibs-4.8.1.1-2...
The package 'libjpeg9-shlibs' will be installed.
Reading dependency for libjpeg9-shlibs-9a-1...
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The package 'liblzma5-shlibs' will be installed.
Reading dependency for liblzma5-shlibs-5.0.5-2...
Reading runtime dependency for liblzma5-shlibs-5.0.5-2...
The package 'libpng16-shlibs' will be installed.
Reading dependency for libpng16-shlibs-1.6.12-1...
Reading runtime dependency for libpng16-shlibs-1.6.12-1...
The package 'libtiff5-shlibs' will be installed.
Reading dependency for libtiff5-shlibs-4.0.3-5...
Reading runtime dependency for libtiff5-shlibs-4.0.3-5...
The package 'pango1-xft2-ft219-shlibs' will be installed.
Reading dependency for pango1-xft2-ft219-shlibs-1.24.5-9...
Reading runtime dependency for pango1-xft2-ft219-shlibs-1.24.5-9...
The package 'libpcre1-shlibs' will be installed.
Reading dependency for libpcre1-shlibs-8.35-1...
Reading runtime dependency for libpcre1-shlibs-8.35-1...
The package 'readline6-shlibs' will be installed.
Reading dependency for readline6-shlibs-6.3.6-1...
Reading runtime dependency for readline6-shlibs-6.3.6-1...
The package 'tcltk' will be installed.
Reading dependency for tcltk-8.6.1-104...
Reading runtime dependency for tcltk-8.6.1-104...
The package 'fontconfig2-shlibs' will be installed.
Reading dependency for fontconfig2-shlibs-2.10.2-1...
Reading runtime dependency for fontconfig2-shlibs-2.10.2-1...
The package 'freetype219-shlibs' will be installed.
Reading dependency for freetype219-shlibs-2.4.12-1...
Reading runtime dependency for freetype219-shlibs-2.4.12-1...
The package 'pixman-shlibs' will be installed.
Reading dependency for pixman-shlibs-0.32.4-1...
Reading runtime dependency for pixman-shlibs-0.32.4-1...
The package 'xdg-base' will be installed.
Reading dependency for xdg-base-0.8-2...
Reading runtime dependency for xdg-base-0.8-2...
The package 'libjbig-shlibs' will be installed.
Reading dependency for libjbig-shlibs-2.0-1...
Reading runtime dependency for libjbig-shlibs-2.0-1...
The package 'libthai-shlibs' will be installed.
Reading dependency for libthai-shlibs-0.1.20-1...
Reading runtime dependency for libthai-shlibs-0.1.20-1...
The package 'xft2-shlibs' will be installed.
Reading dependency for xft2-shlibs-2.2.0-3...
Reading runtime dependency for xft2-shlibs-2.2.0-3...
The package 'tcltk-shlibs' will be installed.
Reading dependency for tcltk-shlibs-8.6.1-104...
Reading runtime dependency for tcltk-shlibs-8.6.1-104...
The package 'fontconfig-config' will be installed.
Reading dependency for fontconfig-config-2.10.2-1...
Reading runtime dependency for fontconfig-config-2.10.2-1...
The package 'expat1-shlibs' will be installed.
Reading dependency for expat1-shlibs-2.1.0-1...
Reading runtime dependency for expat1-shlibs-2.1.0-1...
The package 'libdatrie1-shlibs' will be installed.
Reading dependency for libdatrie1-shlibs-0.2.8-2...
Reading runtime dependency for libdatrie1-shlibs-0.2.8-2...
The package 'libthai' will be installed.
Reading dependency for libthai-0.1.20-1...
Reading runtime dependency for libthai-0.1.20-1...
The following package will be rebuilt:
 cran-matrixcalc-r30
The following 28 additional packages will be installed:
 cairo-shlibs expat1-shlibs flag-sort fontconfig-config fontconfig2-shlibs
 freetype219-shlibs gcc49-shlibs glib2-shlibs libdatrie1-shlibs
 libicu48-shlibs libjbig-shlibs libjpeg9-shlibs liblzma5-shlibs
 libpcre1-shlibs libpng16-shlibs libthai libthai-shlibs libtiff5-shlibs
 pango1-xft2-ft219-shlibs pixman-shlibs r-base30 r-base30-dev r-base30-shlibs
 readline6-shlibs tcltk tcltk-shlibs xdg-base xft2-shlibs
Do you want to continue? [Y/n] (assuming default)
Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/expat1-shlibs_2.1.0-1_darwin-x86_64.deb
Selecting previously deselected package expat1-shlibs.
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Unpacking expat1-shlibs (from .../expat1-shlibs_2.1.0-1_darwin-x86_64.deb) ...
Setting up expat1-shlibs (2.1.0-1) ...

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/sw/bin/dpkg-lockwait -i /sw/fink/debs/flag-sort_0.5-1_darwin-x86_64.deb
Selecting previously deselected package flag-sort.
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Unpacking flag-sort (from .../flag-sort_0.5-1_darwin-x86_64.deb) ...
Setting up flag-sort (0.5-1) ...

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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/freetype219-shlibs_2.4.12-1_darwin-x86_64.deb
Selecting previously deselected package freetype219-shlibs.
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Setting up freetype219-shlibs (2.4.12-1) ...

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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/gcc49-shlibs_4.9.1-1000_darwin-x86_64.deb
Selecting previously deselected package gcc49-shlibs.
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Clearing dependency_libs of .la files being installed

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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libdatrie1-shlibs_0.2.8-2_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libicu48-shlibs_4.8.1.1-2_darwin-x86_64.deb
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Setting up libicu48-shlibs (4.8.1.1-2) ...

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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjbig-shlibs_2.0-1_darwin-x86_64.deb
Selecting previously deselected package libjbig-shlibs.
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjpeg9-shlibs_9a-1_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/utils/liblzma5-shlibs_5.0.5-2_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libpcre1-shlibs_8.35-1_darwin-x86_64.deb
Selecting previously deselected package libpcre1-shlibs.
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libpng16-shlibs_1.6.12-1_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libthai-shlibs_0.1.20-1_darwin-x86_64.deb /sw/fink/debs/libthai_0.1.20-1_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/debs/libtiff5-shlibs_4.0.3-5_darwin-x86_64.deb
Selecting previously deselected package libtiff5-shlibs.
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/pixman-shlibs_0.32.4-1_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/readline6-shlibs_6.3.6-1_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig2-shlibs_2.10.2-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig-config_2.10.2-1_darwin-x86_64.deb
Selecting previously deselected package fontconfig2-shlibs.
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/xft2-shlibs_2.2.0-3_darwin-x86_64.deb
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Setting up r-base30-dev (3.0.3-8) ...

Setting up r-base30 (3.0.3-8) ...

Setting runtime build-lock...
dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-matrixcalc-r30-1.0-3-1 /sw/build.build
dpkg-deb: building package `fink-buildlock-cran-matrixcalc-r30-1.0-3-1' in `/sw/build.build/fink-buildlock-cran-matrixcalc-r30-1.0-3-1_2014.07.31-22.01.02_darwin-x86_64.deb'.
Installing build-lock package...
/sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-matrixcalc-r30-1.0-3-1_2014.07.31-22.01.02_darwin-x86_64.deb
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Setting up fink-buildlock-cran-matrixcalc-r30-1.0-3-1 (2014.07.31-22.01.02) ...

sudo -u fink-bld [ENV] sh -c /tmp/fink.KGgQR
env LANG=C LC_ALL=C /sw/bin/tar  --no-same-owner --no-same-permissions -xvf /sw/src/matrixcalc_1.0-3.tar.gz
matrixcalc/
matrixcalc/MD5
matrixcalc/R/
matrixcalc/R/vech.R
matrixcalc/R/vec.R
matrixcalc/R/vandermonde.matrix.R
matrixcalc/R/upper.triangle.R
matrixcalc/R/u.vectors.R
matrixcalc/R/toeplitz.matrix.R
matrixcalc/R/T.matrices.R
matrixcalc/R/symmetric.pascal.matrix.R
matrixcalc/R/svd.inverse.R
matrixcalc/R/stirling.matrix.R
matrixcalc/R/spectral.norm.R
matrixcalc/R/shift.up.R
matrixcalc/R/shift.right.R
matrixcalc/R/shift.left.R
matrixcalc/R/shift.down.R
matrixcalc/R/set.submatrix.R
matrixcalc/R/s.R
matrixcalc/R/pascal.matrix.R
matrixcalc/R/one.norm.R
matrixcalc/R/N.matrix.R
matrixcalc/R/maximum.norm.R
matrixcalc/R/matrix.trace.R
matrixcalc/R/matrix.rank.R
matrixcalc/R/matrix.power.R
matrixcalc/R/matrix.inverse.R
matrixcalc/R/lu.decomposition.R
matrixcalc/R/lower.triangle.R
matrixcalc/R/L.matrix.R
matrixcalc/R/K.matrix.R
matrixcalc/R/is.symmetric.matrix.R
matrixcalc/R/is.square.matrix.R
matrixcalc/R/is.skew.symmetric.matrix.R
matrixcalc/R/is.singular.matrix.R
matrixcalc/R/is.positive.semi.definite.R
matrixcalc/R/is.positive.definite.R
matrixcalc/R/is.non.singular.matrix.R
matrixcalc/R/is.negative.semi.definite.R
matrixcalc/R/is.negative.definite.R
matrixcalc/R/is.indefinite.R
matrixcalc/R/is.idempotent.matrix.R
matrixcalc/R/is.diagonal.matrix.R
matrixcalc/R/inf.norm.R
matrixcalc/R/hilbert.schmidt.norm.R
matrixcalc/R/hilbert.matrix.R
matrixcalc/R/hankel.matrix.R
matrixcalc/R/hadamard.prod.R
matrixcalc/R/H.matrices.R
matrixcalc/R/frobenius.prod.R
matrixcalc/R/frobenius.norm.R
matrixcalc/R/frobenius.matrix.R
matrixcalc/R/fibonacci.matrix.R
matrixcalc/R/entrywise.norm.R
matrixcalc/R/elimination.matrix.R
matrixcalc/R/E.matrices.R
matrixcalc/R/duplication.matrix.R
matrixcalc/R/direct.sum.R
matrixcalc/R/direct.prod.R
matrixcalc/R/D.matrix.R
matrixcalc/R/creation.matrix.R
matrixcalc/R/commutation.matrix.R
matrixcalc/NAMESPACE
matrixcalc/man/
matrixcalc/man/vech.Rd
matrixcalc/man/vec.Rd
matrixcalc/man/vandermonde.matrix.Rd
matrixcalc/man/upper.triangle.Rd
matrixcalc/man/u.vectors.Rd
matrixcalc/man/toeplitz.matrix.Rd
matrixcalc/man/T.matrices.Rd
matrixcalc/man/symmetric.pascal.matrix.Rd
matrixcalc/man/svd.inverse.Rd
matrixcalc/man/stirling.matrix.Rd
matrixcalc/man/spectral.norm.Rd
matrixcalc/man/shift.up.Rd
matrixcalc/man/shift.right.Rd
matrixcalc/man/shift.left.Rd
matrixcalc/man/shift.down.Rd
matrixcalc/man/set.submatrix.Rd
matrixcalc/man/s.Rd
matrixcalc/man/pascal.matrix.Rd
matrixcalc/man/one.norm.Rd
matrixcalc/man/N.matrix.Rd
matrixcalc/man/maximum.norm.Rd
matrixcalc/man/matrix.trace.Rd
matrixcalc/man/matrix.rank.Rd
matrixcalc/man/matrix.power.Rd
matrixcalc/man/matrix.inverse.Rd
matrixcalc/man/lu.decomposition.Rd
matrixcalc/man/lower.triangle.Rd
matrixcalc/man/L.matrix.Rd
matrixcalc/man/K.matrix.Rd
matrixcalc/man/is.symmetric.matrix.Rd
matrixcalc/man/is.square.matrix.Rd
matrixcalc/man/is.skew.symmetric.matrix.Rd
matrixcalc/man/is.singular.matrix.Rd
matrixcalc/man/is.positive.semi.definite.Rd
matrixcalc/man/is.positive.definite.Rd
matrixcalc/man/is.non.singular.matrix.Rd
matrixcalc/man/is.negative.semi.definite.Rd
matrixcalc/man/is.negative.definite.Rd
matrixcalc/man/is.indefinite.Rd
matrixcalc/man/is.idempotent.matrix.Rd
matrixcalc/man/is.diagonal.matrix.Rd
matrixcalc/man/inf.norm.Rd
matrixcalc/man/hilbert.schmidt.norm.Rd
matrixcalc/man/hilbert.matrix.Rd
matrixcalc/man/hankel.matrix.Rd
matrixcalc/man/hadamard.prod.Rd
matrixcalc/man/H.matrices.Rd
matrixcalc/man/frobenius.prod.Rd
matrixcalc/man/frobenius.norm.Rd
matrixcalc/man/frobenius.matrix.Rd
matrixcalc/man/fibonacci.matrix.Rd
matrixcalc/man/entrywise.norm.Rd
matrixcalc/man/elimination.matrix.Rd
matrixcalc/man/E.matrices.Rd
matrixcalc/man/duplication.matrix.Rd
matrixcalc/man/direct.sum.Rd
matrixcalc/man/direct.prod.Rd
matrixcalc/man/D.matrix.Rd
matrixcalc/man/creation.matrix.Rd
matrixcalc/man/commutation.matrix.Rd
matrixcalc/DESCRIPTION
sudo -u fink-bld [ENV] sh -c /tmp/fink.3uIhj
/tmp/fink.4ywKd
#!/bin/bash -ev
  export TMPDIR=/sw/build.build/cran-matrixcalc-r30-1.0-3-1/matrixcalc/tmp
  BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R
  
  pushd ..
/sw/build.build/cran-matrixcalc-r30-1.0-3-1 /sw/build.build/cran-matrixcalc-r30-1.0-3-1/matrixcalc
  if [[ 3.0 > 2.15 ]]; then
    $BIN_R --verbose CMD build --no-build-vignettes matrixcalc
  else
    $BIN_R --verbose CMD build --no-vignettes matrixcalc
  fi
* checking for file 'matrixcalc/DESCRIPTION' ... OK
* preparing 'matrixcalc':
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'matrixcalc_1.0-3.tar.gz'

/bin/rm -rf /sw/build.build/root-cran-matrixcalc-r30-1.0-3-1
/bin/mkdir -p /sw/build.build/root-cran-matrixcalc-r30-1.0-3-1/sw
/bin/mkdir -p /sw/build.build/root-cran-matrixcalc-r30-1.0-3-1/DEBIAN
/usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-matrixcalc-r30-1.0-3-1
sudo -u fink-bld [ENV] sh -c /tmp/fink.s5qaJ
/tmp/fink.So_8j
#!/bin/sh -ev
  BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R
  
  mkdir -p /sw/build.build/root-cran-matrixcalc-r30-1.0-3-1/sw/lib/R/3.0/site-library
  pushd /sw/build.build/cran-matrixcalc-r30-1.0-3-1/matrixcalc/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-matrixcalc-r30-1.0-3-1/sw/lib/R/3.0/site-library matrixcalc
/sw/build.build/cran-matrixcalc-r30-1.0-3-1 /sw/build.build/cran-matrixcalc-r30-1.0-3-1/matrixcalc
* installing *source* package 'matrixcalc' ...
** package 'matrixcalc' successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (matrixcalc)
sudo -u fink-bld [ENV] sh -c /tmp/fink.VNKR_
/bin/rm -f /sw/build.build/root-cran-matrixcalc-r30-1.0-3-1/sw/info/dir /sw/build.build/root-cran-matrixcalc-r30-1.0-3-1/sw/info/dir.old /sw/build.build/root-cran-matrixcalc-r30-1.0-3-1/sw/share/info/dir /sw/build.build/root-cran-matrixcalc-r30-1.0-3-1/sw/share/info/dir.old
Reverting ownership of install dir to root
Writing control file...
Writing md5sums file...
env LANG=C LC_ALL=C dpkg-deb -b root-cran-matrixcalc-r30-1.0-3-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods
dpkg-deb: building package `cran-matrixcalc-r30' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-matrixcalc-r30_1.0-3-1_darwin-x86_64.deb'.
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-cran-matrixcalc-r30-1.0-3-1
(Reading database ... 7299 files and directories currently installed.)
Removing fink-buildlock-cran-matrixcalc-r30-1.0-3-1 ...