printf '
' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-matrixcalc-r31 2>&1
The package 'cran-matrixcalc-r31' will be built without being installed.
Reading build dependency for cran-matrixcalc-r31-1.0-3-1...
Reading dependency for cran-matrixcalc-r31-1.0-3-1...
Reading build conflict for cran-matrixcalc-r31-1.0-3-1...
The package 'r-base31-dev' will be installed.
Reading dependency for r-base31-dev-3.1.1-2...
Reading runtime dependency for r-base31-dev-3.1.1-2...
The package 'r-base31' will be installed.
Reading dependency for r-base31-3.1.1-2...
Reading runtime dependency for r-base31-3.1.1-2...
The package 'r-base31-shlibs' will be installed.
Reading dependency for r-base31-shlibs-3.1.1-2...
Reading runtime dependency for r-base31-shlibs-3.1.1-2...
The package 'flag-sort' will be installed.
Reading dependency for flag-sort-0.5-1...
Reading runtime dependency for flag-sort-0.5-1...
The package 'cairo-shlibs' will be installed.
Reading dependency for cairo-shlibs-1.12.14-1...
Reading runtime dependency for cairo-shlibs-1.12.14-1...
The package 'gcc49-shlibs' will be installed.
Reading dependency for gcc49-shlibs-4.9.1-1000...
Reading runtime dependency for gcc49-shlibs-4.9.1-1000...
The package 'glib2-shlibs' will be installed.
Reading dependency for glib2-shlibs-2.22.4-8...
Reading runtime dependency for glib2-shlibs-2.22.4-8...
The package 'libicu48-shlibs' will be installed.
Reading dependency for libicu48-shlibs-4.8.1.1-2...
Reading runtime dependency for libicu48-shlibs-4.8.1.1-2...
The package 'libjpeg9-shlibs' will be installed.
Reading dependency for libjpeg9-shlibs-9a-1...
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The package 'liblzma5-shlibs' will be installed.
Reading dependency for liblzma5-shlibs-5.0.5-2...
Reading runtime dependency for liblzma5-shlibs-5.0.5-2...
The package 'libpng16-shlibs' will be installed.
Reading dependency for libpng16-shlibs-1.6.12-1...
Reading runtime dependency for libpng16-shlibs-1.6.12-1...
The package 'libtiff5-shlibs' will be installed.
Reading dependency for libtiff5-shlibs-4.0.3-5...
Reading runtime dependency for libtiff5-shlibs-4.0.3-5...
The package 'pango1-xft2-ft219-shlibs' will be installed.
Reading dependency for pango1-xft2-ft219-shlibs-1.24.5-9...
Reading runtime dependency for pango1-xft2-ft219-shlibs-1.24.5-9...
The package 'libpcre1-shlibs' will be installed.
Reading dependency for libpcre1-shlibs-8.35-1...
Reading runtime dependency for libpcre1-shlibs-8.35-1...
The package 'readline6-shlibs' will be installed.
Reading dependency for readline6-shlibs-6.3.6-1...
Reading runtime dependency for readline6-shlibs-6.3.6-1...
The package 'tcltk' will be installed.
Reading dependency for tcltk-8.6.1-104...
Reading runtime dependency for tcltk-8.6.1-104...
The package 'fontconfig2-shlibs' will be installed.
Reading dependency for fontconfig2-shlibs-2.10.2-1...
Reading runtime dependency for fontconfig2-shlibs-2.10.2-1...
The package 'freetype219-shlibs' will be installed.
Reading dependency for freetype219-shlibs-2.4.12-1...
Reading runtime dependency for freetype219-shlibs-2.4.12-1...
The package 'pixman-shlibs' will be installed.
Reading dependency for pixman-shlibs-0.32.4-1...
Reading runtime dependency for pixman-shlibs-0.32.4-1...
The package 'xdg-base' will be installed.
Reading dependency for xdg-base-0.8-2...
Reading runtime dependency for xdg-base-0.8-2...
The package 'libjbig-shlibs' will be installed.
Reading dependency for libjbig-shlibs-2.0-1...
Reading runtime dependency for libjbig-shlibs-2.0-1...
The package 'libthai-shlibs' will be installed.
Reading dependency for libthai-shlibs-0.1.20-1...
Reading runtime dependency for libthai-shlibs-0.1.20-1...
The package 'xft2-shlibs' will be installed.
Reading dependency for xft2-shlibs-2.2.0-3...
Reading runtime dependency for xft2-shlibs-2.2.0-3...
The package 'tcltk-shlibs' will be installed.
Reading dependency for tcltk-shlibs-8.6.1-104...
Reading runtime dependency for tcltk-shlibs-8.6.1-104...
The package 'fontconfig-config' will be installed.
Reading dependency for fontconfig-config-2.10.2-1...
Reading runtime dependency for fontconfig-config-2.10.2-1...
The package 'expat1-shlibs' will be installed.
Reading dependency for expat1-shlibs-2.1.0-1...
Reading runtime dependency for expat1-shlibs-2.1.0-1...
The package 'libdatrie1-shlibs' will be installed.
Reading dependency for libdatrie1-shlibs-0.2.8-2...
Reading runtime dependency for libdatrie1-shlibs-0.2.8-2...
The package 'libthai' will be installed.
Reading dependency for libthai-0.1.20-1...
Reading runtime dependency for libthai-0.1.20-1...
The following package will be rebuilt:
cran-matrixcalc-r31
The following 28 additional packages will be installed:
cairo-shlibs expat1-shlibs flag-sort fontconfig-config fontconfig2-shlibs
freetype219-shlibs gcc49-shlibs glib2-shlibs libdatrie1-shlibs
libicu48-shlibs libjbig-shlibs libjpeg9-shlibs liblzma5-shlibs
libpcre1-shlibs libpng16-shlibs libthai libthai-shlibs libtiff5-shlibs
pango1-xft2-ft219-shlibs pixman-shlibs r-base31 r-base31-dev r-base31-shlibs
readline6-shlibs tcltk tcltk-shlibs xdg-base xft2-shlibs
Do you want to continue? [Y/n] (assuming default)
curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/matrixcalc_1.0-3.tar.gz
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 28499 100 28499 0 0 85742 0 --:--:-- --:--:-- --:--:-- 85840
Reading buildlock packages...
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/expat1-shlibs_2.1.0-1_darwin-x86_64.deb
Selecting previously deselected package expat1-shlibs.
(Reading database ... 4296 files and directories currently installed.)
Unpacking expat1-shlibs (from .../expat1-shlibs_2.1.0-1_darwin-x86_64.deb) ...
Setting up expat1-shlibs (2.1.0-1) ...
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/sw/bin/dpkg-lockwait -i /sw/fink/debs/flag-sort_0.5-1_darwin-x86_64.deb
Selecting previously deselected package flag-sort.
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Setting up flag-sort (0.5-1) ...
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/freetype219-shlibs_2.4.12-1_darwin-x86_64.deb
Selecting previously deselected package freetype219-shlibs.
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Unpacking freetype219-shlibs (from .../freetype219-shlibs_2.4.12-1_darwin-x86_64.deb) ...
Setting up freetype219-shlibs (2.4.12-1) ...
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/gcc49-shlibs_4.9.1-1000_darwin-x86_64.deb
Selecting previously deselected package gcc49-shlibs.
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Unpacking gcc49-shlibs (from .../gcc49-shlibs_4.9.1-1000_darwin-x86_64.deb) ...
Setting up gcc49-shlibs (4.9.1-1000) ...
Clearing dependency_libs of .la files being installed
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libdatrie1-shlibs_0.2.8-2_darwin-x86_64.deb
Selecting previously deselected package libdatrie1-shlibs.
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libicu48-shlibs_4.8.1.1-2_darwin-x86_64.deb
Selecting previously deselected package libicu48-shlibs.
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Unpacking libicu48-shlibs (from .../libicu48-shlibs_4.8.1.1-2_darwin-x86_64.deb) ...
Setting up libicu48-shlibs (4.8.1.1-2) ...
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjbig-shlibs_2.0-1_darwin-x86_64.deb
Selecting previously deselected package libjbig-shlibs.
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjpeg9-shlibs_9a-1_darwin-x86_64.deb
Selecting previously deselected package libjpeg9-shlibs.
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/utils/liblzma5-shlibs_5.0.5-2_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libpcre1-shlibs_8.35-1_darwin-x86_64.deb
Selecting previously deselected package libpcre1-shlibs.
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Unpacking libpcre1-shlibs (from .../libpcre1-shlibs_8.35-1_darwin-x86_64.deb) ...
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libpng16-shlibs_1.6.12-1_darwin-x86_64.deb
Selecting previously deselected package libpng16-shlibs.
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libthai-shlibs_0.1.20-1_darwin-x86_64.deb /sw/fink/debs/libthai_0.1.20-1_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/debs/libtiff5-shlibs_4.0.3-5_darwin-x86_64.deb
Selecting previously deselected package libtiff5-shlibs.
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/pixman-shlibs_0.32.4-1_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/readline6-shlibs_6.3.6-1_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/debs/xdg-base_0.8-2_darwin-x86_64.deb
Selecting previously deselected package xdg-base.
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig2-shlibs_2.10.2-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig-config_2.10.2-1_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/debs/glib2-shlibs_2.22.4-8_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/xft2-shlibs_2.2.0-3_darwin-x86_64.deb
Selecting previously deselected package xft2-shlibs.
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/cairo-shlibs_1.12.14-1_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/gnome/pango1-xft2-ft219-shlibs_1.24.5-9_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/debs/tcltk_8.6.1-104_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/tcltk-shlibs_8.6.1-104_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base31_3.1.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base31-shlibs_3.1.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base31-dev_3.1.1-2_darwin-x86_64.deb
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Setting up r-base31-shlibs (3.1.1-2) ...
Setting up r-base31-dev (3.1.1-2) ...
Setting up r-base31 (3.1.1-2) ...
Setting runtime build-lock...
dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-matrixcalc-r31-1.0-3-1 /sw/build.build
dpkg-deb: building package `fink-buildlock-cran-matrixcalc-r31-1.0-3-1' in `/sw/build.build/fink-buildlock-cran-matrixcalc-r31-1.0-3-1_2014.07.27-12.12.43_darwin-x86_64.deb'.
Installing build-lock package...
/sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-matrixcalc-r31-1.0-3-1_2014.07.27-12.12.43_darwin-x86_64.deb
Selecting previously deselected package fink-buildlock-cran-matrixcalc-r31-1.0-3-1.
(Reading database ... 7285 files and directories currently installed.)
Unpacking fink-buildlock-cran-matrixcalc-r31-1.0-3-1 (from .../fink-buildlock-cran-matrixcalc-r31-1.0-3-1_2014.07.27-12.12.43_darwin-x86_64.deb) ...
Setting up fink-buildlock-cran-matrixcalc-r31-1.0-3-1 (2014.07.27-12.12.43) ...
sudo -u fink-bld [ENV] sh -c /tmp/fink.Yvkqw
env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/matrixcalc_1.0-3.tar.gz
matrixcalc/
matrixcalc/MD5
matrixcalc/R/
matrixcalc/R/vech.R
matrixcalc/R/vec.R
matrixcalc/R/vandermonde.matrix.R
matrixcalc/R/upper.triangle.R
matrixcalc/R/u.vectors.R
matrixcalc/R/toeplitz.matrix.R
matrixcalc/R/T.matrices.R
matrixcalc/R/symmetric.pascal.matrix.R
matrixcalc/R/svd.inverse.R
matrixcalc/R/stirling.matrix.R
matrixcalc/R/spectral.norm.R
matrixcalc/R/shift.up.R
matrixcalc/R/shift.right.R
matrixcalc/R/shift.left.R
matrixcalc/R/shift.down.R
matrixcalc/R/set.submatrix.R
matrixcalc/R/s.R
matrixcalc/R/pascal.matrix.R
matrixcalc/R/one.norm.R
matrixcalc/R/N.matrix.R
matrixcalc/R/maximum.norm.R
matrixcalc/R/matrix.trace.R
matrixcalc/R/matrix.rank.R
matrixcalc/R/matrix.power.R
matrixcalc/R/matrix.inverse.R
matrixcalc/R/lu.decomposition.R
matrixcalc/R/lower.triangle.R
matrixcalc/R/L.matrix.R
matrixcalc/R/K.matrix.R
matrixcalc/R/is.symmetric.matrix.R
matrixcalc/R/is.square.matrix.R
matrixcalc/R/is.skew.symmetric.matrix.R
matrixcalc/R/is.singular.matrix.R
matrixcalc/R/is.positive.semi.definite.R
matrixcalc/R/is.positive.definite.R
matrixcalc/R/is.non.singular.matrix.R
matrixcalc/R/is.negative.semi.definite.R
matrixcalc/R/is.negative.definite.R
matrixcalc/R/is.indefinite.R
matrixcalc/R/is.idempotent.matrix.R
matrixcalc/R/is.diagonal.matrix.R
matrixcalc/R/inf.norm.R
matrixcalc/R/hilbert.schmidt.norm.R
matrixcalc/R/hilbert.matrix.R
matrixcalc/R/hankel.matrix.R
matrixcalc/R/hadamard.prod.R
matrixcalc/R/H.matrices.R
matrixcalc/R/frobenius.prod.R
matrixcalc/R/frobenius.norm.R
matrixcalc/R/frobenius.matrix.R
matrixcalc/R/fibonacci.matrix.R
matrixcalc/R/entrywise.norm.R
matrixcalc/R/elimination.matrix.R
matrixcalc/R/E.matrices.R
matrixcalc/R/duplication.matrix.R
matrixcalc/R/direct.sum.R
matrixcalc/R/direct.prod.R
matrixcalc/R/D.matrix.R
matrixcalc/R/creation.matrix.R
matrixcalc/R/commutation.matrix.R
matrixcalc/NAMESPACE
matrixcalc/man/
matrixcalc/man/vech.Rd
matrixcalc/man/vec.Rd
matrixcalc/man/vandermonde.matrix.Rd
matrixcalc/man/upper.triangle.Rd
matrixcalc/man/u.vectors.Rd
matrixcalc/man/toeplitz.matrix.Rd
matrixcalc/man/T.matrices.Rd
matrixcalc/man/symmetric.pascal.matrix.Rd
matrixcalc/man/svd.inverse.Rd
matrixcalc/man/stirling.matrix.Rd
matrixcalc/man/spectral.norm.Rd
matrixcalc/man/shift.up.Rd
matrixcalc/man/shift.right.Rd
matrixcalc/man/shift.left.Rd
matrixcalc/man/shift.down.Rd
matrixcalc/man/set.submatrix.Rd
matrixcalc/man/s.Rd
matrixcalc/man/pascal.matrix.Rd
matrixcalc/man/one.norm.Rd
matrixcalc/man/N.matrix.Rd
matrixcalc/man/maximum.norm.Rd
matrixcalc/man/matrix.trace.Rd
matrixcalc/man/matrix.rank.Rd
matrixcalc/man/matrix.power.Rd
matrixcalc/man/matrix.inverse.Rd
matrixcalc/man/lu.decomposition.Rd
matrixcalc/man/lower.triangle.Rd
matrixcalc/man/L.matrix.Rd
matrixcalc/man/K.matrix.Rd
matrixcalc/man/is.symmetric.matrix.Rd
matrixcalc/man/is.square.matrix.Rd
matrixcalc/man/is.skew.symmetric.matrix.Rd
matrixcalc/man/is.singular.matrix.Rd
matrixcalc/man/is.positive.semi.definite.Rd
matrixcalc/man/is.positive.definite.Rd
matrixcalc/man/is.non.singular.matrix.Rd
matrixcalc/man/is.negative.semi.definite.Rd
matrixcalc/man/is.negative.definite.Rd
matrixcalc/man/is.indefinite.Rd
matrixcalc/man/is.idempotent.matrix.Rd
matrixcalc/man/is.diagonal.matrix.Rd
matrixcalc/man/inf.norm.Rd
matrixcalc/man/hilbert.schmidt.norm.Rd
matrixcalc/man/hilbert.matrix.Rd
matrixcalc/man/hankel.matrix.Rd
matrixcalc/man/hadamard.prod.Rd
matrixcalc/man/H.matrices.Rd
matrixcalc/man/frobenius.prod.Rd
matrixcalc/man/frobenius.norm.Rd
matrixcalc/man/frobenius.matrix.Rd
matrixcalc/man/fibonacci.matrix.Rd
matrixcalc/man/entrywise.norm.Rd
matrixcalc/man/elimination.matrix.Rd
matrixcalc/man/E.matrices.Rd
matrixcalc/man/duplication.matrix.Rd
matrixcalc/man/direct.sum.Rd
matrixcalc/man/direct.prod.Rd
matrixcalc/man/D.matrix.Rd
matrixcalc/man/creation.matrix.Rd
matrixcalc/man/commutation.matrix.Rd
matrixcalc/DESCRIPTION
sudo -u fink-bld [ENV] sh -c /tmp/fink.ZaUXZ
/tmp/fink.l3Lvp
#!/bin/bash -ev
export TMPDIR=/sw/build.build/cran-matrixcalc-r31-1.0-3-1/matrixcalc/tmp
BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R
pushd ..
/sw/build.build/cran-matrixcalc-r31-1.0-3-1 /sw/build.build/cran-matrixcalc-r31-1.0-3-1/matrixcalc
if [[ 3.1 > 2.15 ]]; then
$BIN_R --verbose CMD build --no-build-vignettes matrixcalc
else
$BIN_R --verbose CMD build --no-vignettes matrixcalc
fi
* checking for file 'matrixcalc/DESCRIPTION' ... OK
* preparing 'matrixcalc':
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'matrixcalc_1.0-3.tar.gz'
/bin/rm -rf /sw/build.build/root-cran-matrixcalc-r31-1.0-3-1
/bin/mkdir -p /sw/build.build/root-cran-matrixcalc-r31-1.0-3-1/sw
/bin/mkdir -p /sw/build.build/root-cran-matrixcalc-r31-1.0-3-1/DEBIAN
/usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-matrixcalc-r31-1.0-3-1
sudo -u fink-bld [ENV] sh -c /tmp/fink.Noqok
/tmp/fink.vfvCu
#!/bin/sh -ev
BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R
mkdir -p /sw/build.build/root-cran-matrixcalc-r31-1.0-3-1/sw/lib/R/3.1/site-library
pushd /sw/build.build/cran-matrixcalc-r31-1.0-3-1/matrixcalc/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-matrixcalc-r31-1.0-3-1/sw/lib/R/3.1/site-library matrixcalc
/sw/build.build/cran-matrixcalc-r31-1.0-3-1 /sw/build.build/cran-matrixcalc-r31-1.0-3-1/matrixcalc
* installing *source* package 'matrixcalc' ...
** package 'matrixcalc' successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (matrixcalc)
sudo -u fink-bld [ENV] sh -c /tmp/fink.csdFf
/bin/rm -f /sw/build.build/root-cran-matrixcalc-r31-1.0-3-1/sw/info/dir /sw/build.build/root-cran-matrixcalc-r31-1.0-3-1/sw/info/dir.old /sw/build.build/root-cran-matrixcalc-r31-1.0-3-1/sw/share/info/dir /sw/build.build/root-cran-matrixcalc-r31-1.0-3-1/sw/share/info/dir.old
Reverting ownership of install dir to root
Writing control file...
Writing md5sums file...
env LANG=C LC_ALL=C dpkg-deb -b root-cran-matrixcalc-r31-1.0-3-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods
dpkg-deb: building package `cran-matrixcalc-r31' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-matrixcalc-r31_1.0-3-1_darwin-x86_64.deb'.
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-cran-matrixcalc-r31-1.0-3-1
(Reading database ... 7286 files and directories currently installed.)
Removing fink-buildlock-cran-matrixcalc-r31-1.0-3-1 ...