printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-mcmcpack-r30 2>&1 The package 'cran-mcmcpack-r30' will be built without being installed. Reading build dependency for cran-mcmcpack-r30-1.3-3-1... Reading dependency for cran-mcmcpack-r30-1.3-3-1... Reading build conflict for cran-mcmcpack-r30-1.3-3-1... The package 'r-base30-dev' will be installed. Reading dependency for r-base30-dev-3.0.3-8... Reading runtime dependency for r-base30-dev-3.0.3-8... The package 'libgettext8-dev' will be installed. Reading dependency for libgettext8-dev-0.18.3.1-2... Reading runtime dependency for libgettext8-dev-0.18.3.1-2... The package 'r-base30' will be installed. Reading dependency for r-base30-3.0.3-8... Reading runtime dependency for r-base30-3.0.3-8... The package 'cran-coda-r30' will be installed. Reading dependency for cran-coda-r30-0.16-1-1... Reading runtime dependency for cran-coda-r30-0.16-1-1... The package 'cran-mass-r30' will be installed. Reading dependency for cran-mass-r30-7.3-32-2... Reading runtime dependency for cran-mass-r30-7.3-32-2... The package 'r-base30-shlibs' will be installed. Reading dependency for r-base30-shlibs-3.0.3-8... Reading runtime dependency for r-base30-shlibs-3.0.3-8... The package 'gettext-bin' will be installed. Reading dependency for gettext-bin-0.18.3.1-2... Reading runtime dependency for gettext-bin-0.18.3.1-2... The package 'flag-sort' will be installed. Reading dependency for flag-sort-0.5-1... Reading runtime dependency for flag-sort-0.5-1... The package 'cran-lattice-r30' will be installed. Reading dependency for cran-lattice-r30-0.20-29-2... Reading runtime dependency for cran-lattice-r30-0.20-29-2... The package 'cairo-shlibs' will be installed. Reading dependency for cairo-shlibs-1.12.14-1... Reading runtime dependency for cairo-shlibs-1.12.14-1... The package 'gcc49-shlibs' will be installed. Reading dependency for gcc49-shlibs-4.9.1-1000... Reading runtime dependency for gcc49-shlibs-4.9.1-1000... The package 'libicu48-shlibs' will be installed. Reading dependency for libicu48-shlibs-4.8.1.1-2... Reading runtime dependency for libicu48-shlibs-4.8.1.1-2... The package 'pango1-xft2-ft219-shlibs' will be installed. Reading dependency for pango1-xft2-ft219-shlibs-1.24.5-9... Reading runtime dependency for pango1-xft2-ft219-shlibs-1.24.5-9... The package 'libpcre1-shlibs' will be installed. Reading dependency for libpcre1-shlibs-8.35-1... Reading runtime dependency for libpcre1-shlibs-8.35-1... The package 'readline6-shlibs' will be installed. Reading dependency for readline6-shlibs-6.3.6-1... Reading runtime dependency for readline6-shlibs-6.3.6-1... The package 'tcltk' will be installed. Reading dependency for tcltk-8.6.1-104... Reading runtime dependency for tcltk-8.6.1-104... The package 'pixman-shlibs' will be installed. Reading dependency for pixman-shlibs-0.32.4-1... Reading runtime dependency for pixman-shlibs-0.32.4-1... The package 'libthai-shlibs' will be installed. Reading dependency for libthai-shlibs-0.1.20-1... Reading runtime dependency for libthai-shlibs-0.1.20-1... The package 'xft2-shlibs' will be installed. Reading dependency for xft2-shlibs-2.2.0-3... Reading runtime dependency for xft2-shlibs-2.2.0-3... The package 'tcltk-shlibs' will be installed. Reading dependency for tcltk-shlibs-8.6.1-104... Reading runtime dependency for tcltk-shlibs-8.6.1-104... The package 'libdatrie1-shlibs' will be installed. Reading dependency for libdatrie1-shlibs-0.2.8-2... Reading runtime dependency for libdatrie1-shlibs-0.2.8-2... The package 'libthai' will be installed. Reading dependency for libthai-0.1.20-1... Reading runtime dependency for libthai-0.1.20-1... The following package will be rebuilt: cran-mcmcpack-r30 The following 22 additional packages will be installed: cairo-shlibs cran-coda-r30 cran-lattice-r30 cran-mass-r30 flag-sort gcc49-shlibs gettext-bin libdatrie1-shlibs libgettext8-dev libicu48-shlibs libpcre1-shlibs libthai libthai-shlibs pango1-xft2-ft219-shlibs pixman-shlibs r-base30 r-base30-dev r-base30-shlibs readline6-shlibs tcltk tcltk-shlibs xft2-shlibs Do you want to continue? [Y/n] (assuming default) Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/flag-sort_0.5-1_darwin-x86_64.deb Selecting previously deselected package flag-sort. (Reading database ... 56783 files and directories currently installed.) Unpacking flag-sort (from .../flag-sort_0.5-1_darwin-x86_64.deb) ... Setting up flag-sort (0.5-1) ... Reading buildlock packages... 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All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/libgettext8-dev_0.18.3.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/base/gettext-bin_0.18.3.1-2_darwin-x86_64.deb Selecting previously deselected package libgettext8-dev. (Reading database ... 56836 files and directories currently installed.) Unpacking libgettext8-dev (from .../libgettext8-dev_0.18.3.1-2_darwin-x86_64.deb) ... Selecting previously deselected package gettext-bin. Unpacking gettext-bin (from .../gettext-bin_0.18.3.1-2_darwin-x86_64.deb) ... Setting up gettext-bin (0.18.3.1-2) ... Setting up libgettext8-dev (0.18.3.1-2) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libicu48-shlibs_4.8.1.1-2_darwin-x86_64.deb Selecting previously deselected package libicu48-shlibs. 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Unpacking libthai-shlibs (from .../libthai-shlibs_0.1.20-1_darwin-x86_64.deb) ... Selecting previously deselected package libthai. Unpacking libthai (from .../libthai_0.1.20-1_darwin-x86_64.deb) ... Setting up libthai (0.1.20-1) ... Setting up libthai-shlibs (0.1.20-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/pixman-shlibs_0.32.4-1_darwin-x86_64.deb Selecting previously deselected package pixman-shlibs. (Reading database ... 56964 files and directories currently installed.) Unpacking pixman-shlibs (from .../pixman-shlibs_0.32.4-1_darwin-x86_64.deb) ... Setting up pixman-shlibs (0.32.4-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/readline6-shlibs_6.3.6-1_darwin-x86_64.deb Selecting previously deselected package readline6-shlibs. (Reading database ... 56968 files and directories currently installed.) Unpacking readline6-shlibs (from .../readline6-shlibs_6.3.6-1_darwin-x86_64.deb) ... Setting up readline6-shlibs (6.3.6-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/xft2-shlibs_2.2.0-3_darwin-x86_64.deb Selecting previously deselected package xft2-shlibs. (Reading database ... 56979 files and directories currently installed.) Unpacking xft2-shlibs (from .../xft2-shlibs_2.2.0-3_darwin-x86_64.deb) ... Setting up xft2-shlibs (2.2.0-3) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/cairo-shlibs_1.12.14-1_darwin-x86_64.deb Selecting previously deselected package cairo-shlibs. (Reading database ... 56988 files and directories currently installed.) Unpacking cairo-shlibs (from .../cairo-shlibs_1.12.14-1_darwin-x86_64.deb) ... Setting up cairo-shlibs (1.12.14-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/gnome/pango1-xft2-ft219-shlibs_1.24.5-9_darwin-x86_64.deb Selecting previously deselected package pango1-xft2-ft219-shlibs. (Reading database ... 57007 files and directories currently installed.) Unpacking pango1-xft2-ft219-shlibs (from .../pango1-xft2-ft219-shlibs_1.24.5-9_darwin-x86_64.deb) ... Setting up pango1-xft2-ft219-shlibs (1.24.5-9) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/tcltk_8.6.1-104_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/tcltk-shlibs_8.6.1-104_darwin-x86_64.deb Selecting previously deselected package tcltk. (Reading database ... 57051 files and directories currently installed.) Unpacking tcltk (from .../tcltk_8.6.1-104_darwin-x86_64.deb) ... Selecting previously deselected package tcltk-shlibs. Unpacking tcltk-shlibs (from .../tcltk-shlibs_8.6.1-104_darwin-x86_64.deb) ... Setting up tcltk-shlibs (8.6.1-104) ... Setting up tcltk (8.6.1-104) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base30_3.0.3-8_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base30-shlibs_3.0.3-8_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base30-dev_3.0.3-8_darwin-x86_64.deb Selecting previously deselected package r-base30. (Reading database ... 57526 files and directories currently installed.) Unpacking r-base30 (from .../r-base30_3.0.3-8_darwin-x86_64.deb) ... Selecting previously deselected package r-base30-shlibs. Unpacking r-base30-shlibs (from .../r-base30-shlibs_3.0.3-8_darwin-x86_64.deb) ... Selecting previously deselected package r-base30-dev. Unpacking r-base30-dev (from .../r-base30-dev_3.0.3-8_darwin-x86_64.deb) ... Setting up r-base30-shlibs (3.0.3-8) ... Setting up r-base30-dev (3.0.3-8) ... Setting up r-base30 (3.0.3-8) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/cran-lattice-r30_0.20-29-2_darwin-x86_64.deb Selecting previously deselected package cran-lattice-r30. (Reading database ... 59506 files and directories currently installed.) Unpacking cran-lattice-r30 (from .../cran-lattice-r30_0.20-29-2_darwin-x86_64.deb) ... Setting up cran-lattice-r30 (0.20-29-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/cran-mass-r30_7.3-32-2_darwin-x86_64.deb Selecting previously deselected package cran-mass-r30. (Reading database ... 59563 files and directories currently installed.) Unpacking cran-mass-r30 (from .../cran-mass-r30_7.3-32-2_darwin-x86_64.deb) ... Setting up cran-mass-r30 (7.3-32-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/cran-coda-r30_0.16-1-1_darwin-x86_64.deb Selecting previously deselected package cran-coda-r30. (Reading database ... 59628 files and directories currently installed.) Unpacking cran-coda-r30 (from .../cran-coda-r30_0.16-1-1_darwin-x86_64.deb) ... Setting up cran-coda-r30 (0.16-1-1) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-mcmcpack-r30-1.3-3-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-mcmcpack-r30-1.3-3-1' in `/sw/build.build/fink-buildlock-cran-mcmcpack-r30-1.3-3-1_2014.08.01-16.12.36_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-mcmcpack-r30-1.3-3-1_2014.08.01-16.12.36_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-mcmcpack-r30-1.3-3-1. (Reading database ... 59655 files and directories currently installed.) Unpacking fink-buildlock-cran-mcmcpack-r30-1.3-3-1 (from .../fink-buildlock-cran-mcmcpack-r30-1.3-3-1_2014.08.01-16.12.36_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-mcmcpack-r30-1.3-3-1 (2014.08.01-16.12.36) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.fY2eK env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/MCMCpack_1.3-3.tar.gz MCMCpack/ MCMCpack/MD5 MCMCpack/src/ MCMCpack/src/wrapped_generator.h MCMCpack/src/stat.h MCMCpack/src/SSVSquantreg.cc MCMCpack/src/smath.h MCMCpack/src/rtmvnorm.h MCMCpack/src/rng.h MCMCpack/src/optimize.h MCMCpack/src/mersenne.h MCMCpack/src/MCMCtobit.cc MCMCpack/src/MCMCSVDreg.cc MCMCpack/src/MCMCrng.h MCMCpack/src/MCMCresidualBreakAnalysis.cc MCMCpack/src/MCMCregressChange.cc MCMCpack/src/MCMCregress.cc MCMCpack/src/MCMCquantreg.cc MCMCpack/src/MCMCprobitres.cc MCMCpack/src/MCMCprobitChange.cc MCMCpack/src/MCMCprobit.cc MCMCpack/src/MCMCpoissonChange.cc MCMCpack/src/MCMCpoisson.cc MCMCpack/src/MCMCordfactanal.cc MCMCpack/src/MCMCoprobitChange.cc MCMCpack/src/MCMCoprobit.cc MCMCpack/src/MCMCmnlslice.cc MCMCpack/src/MCMCmnlMH.cc MCMCpack/src/MCMCmnl.h MCMCpack/src/MCMCmixfactanal.cc MCMCpack/src/MCMCmetrop1R.cc MCMCpack/src/MCMClogituserprior.cc MCMCpack/src/MCMClogit.cc MCMCpack/src/MCMCirtKdRob.cc MCMCpack/src/MCMCirtKdHet.cc MCMCpack/src/MCMCirtHier1d.cc MCMCpack/src/MCMCirt1d.cc MCMCpack/src/MCMCintervention.cc MCMCpack/src/MCMChregress.cc MCMCpack/src/MCMChpoisson.cc MCMCpack/src/MCMChlogit.cc MCMCpack/src/MCMChierEI.cc MCMCpack/src/MCMChierBetaBinom.cc MCMCpack/src/MCMCfcds.h MCMCpack/src/MCMCfactanal.cc MCMCpack/src/MCMCdynamicIRT1d.cc MCMCpack/src/MCMCdynamicIRT1d-b.cc MCMCpack/src/MCMCdynamicEI.cc MCMCpack/src/MCMCbinaryChange.cc MCMCpack/src/matrix_random_access_iterator.h MCMCpack/src/matrix_forward_iterator.h MCMCpack/src/matrix_bidirectional_iterator.h MCMCpack/src/matrix.h MCMCpack/src/Makevars.in MCMCpack/src/Makevars MCMCpack/src/lecuyer.h MCMCpack/src/lecuyer.cc MCMCpack/src/lapack.h MCMCpack/src/la.h MCMCpack/src/ide.h MCMCpack/src/HMMpanelRE.cc MCMCpack/src/HMMpanelFE.cc MCMCpack/src/HMMmultivariateGaussian.cc MCMCpack/src/error.h MCMCpack/src/distributions.h MCMCpack/src/defs.h MCMCpack/src/datablock.h MCMCpack/src/algorithm.h MCMCpack/README MCMCpack/R/ MCMCpack/R/zzz.R MCMCpack/R/utility.R MCMCpack/R/tomog.R MCMCpack/R/testpanelSubjectBreak.R MCMCpack/R/testpanelGroupBreak.R MCMCpack/R/SSVSquantregsummary.R MCMCpack/R/SSVSquantreg.R MCMCpack/R/scythe.R MCMCpack/R/procrust.R MCMCpack/R/MCmodels.R MCMCpack/R/MCMCtobit.R MCMCpack/R/MCMCSVDreg.R MCMCpack/R/MCMCresidualBreakAnalysis.R MCMCpack/R/MCMCregressChange.R MCMCpack/R/MCMCregress.R MCMCpack/R/MCMCquantreg.R MCMCpack/R/MCMCprobitChange.R MCMCpack/R/MCMCprobit.R MCMCpack/R/MCMCpoissonChange.R MCMCpack/R/MCMCpoisson.R MCMCpack/R/MCMCordfactanal.R MCMCpack/R/MCMCoprobitChange.R MCMCpack/R/MCMCoprobit.R MCMCpack/R/MCMCmnl.R MCMCpack/R/MCMCmixfactanal.R MCMCpack/R/MCMCmetrop1R.R MCMCpack/R/MCMClogit.R MCMCpack/R/MCMCirtKdRob.R MCMCpack/R/MCMCirtKdHet.R MCMCpack/R/MCMCirtKd.R MCMCpack/R/MCMCirtHier1d.R MCMCpack/R/MCMCirt1d.R MCMCpack/R/MCMCintervention.R MCMCpack/R/MCMChregress.R MCMCpack/R/MCMChpoisson.R MCMCpack/R/MCMChlogit.R MCMCpack/R/MCMChierEI.R MCMCpack/R/MCMChierBetaBinom.R MCMCpack/R/MCMCfactanal.R MCMCpack/R/MCMCdynamicIRT1d.R MCMCpack/R/MCMCdynamicIRT1d-b.R MCMCpack/R/MCMCdynamicEI.R MCMCpack/R/MCMCbinaryChange.R MCMCpack/R/make.breaklist.R MCMCpack/R/HMMpanelRE.R MCMCpack/R/HMMpanelFE.R MCMCpack/R/hidden.R MCMCpack/R/hidden-hmodels.R MCMCpack/R/distn.R MCMCpack/R/btsutil.R MCMCpack/R/BayesFactors.R MCMCpack/R/automate.R MCMCpack/NAMESPACE MCMCpack/man/ MCMCpack/man/xpnd.Rd MCMCpack/man/writescythe.Rd MCMCpack/man/wishart.Rd MCMCpack/man/vech.Rd MCMCpack/man/topmodels.Rd MCMCpack/man/tomog.Rd MCMCpack/man/testpanelSubjectBreak.Rd MCMCpack/man/testpanelGroupBreak.Rd MCMCpack/man/SupremeCourt.Rd MCMCpack/man/SSVSquantreg.Rd MCMCpack/man/Senate.Rd MCMCpack/man/Rehnquist.Rd MCMCpack/man/readscythe.Rd MCMCpack/man/QRSSVSsummary.Rd MCMCpack/man/QRSSVSplot.Rd MCMCpack/man/procrust.Rd MCMCpack/man/PostProbMod.Rd MCMCpack/man/plotState.Rd MCMCpack/man/plotIntervention.Rd MCMCpack/man/plotChangepoint.Rd MCMCpack/man/PErisk.Rd MCMCpack/man/noncenhypergeom.Rd MCMCpack/man/Nethvote.Rd MCMCpack/man/mptable.Rd MCMCpack/man/MCpoissongamma.Rd MCMCpack/man/MCnormalnormal.Rd MCMCpack/man/MCmultinomdirichlet.Rd MCMCpack/man/MCMCtobit.Rd MCMCpack/man/MCMCSVDreg.Rd MCMCpack/man/MCMCresidualBreakAnalysis.Rd MCMCpack/man/MCMCregressChange.Rd MCMCpack/man/MCMCregress.Rd MCMCpack/man/MCMCquantreg.Rd MCMCpack/man/MCMCprobitChange.Rd MCMCpack/man/MCMCprobit.Rd MCMCpack/man/MCMCpoissonChange.Rd MCMCpack/man/MCMCpoisson.Rd MCMCpack/man/MCMCordfactanal.Rd MCMCpack/man/MCMCoprobitChange.Rd MCMCpack/man/MCMCoprobit.Rd MCMCpack/man/MCMCmnl.Rd MCMCpack/man/MCMCmixfactanal.Rd MCMCpack/man/MCMCmetrop1R.Rd MCMCpack/man/MCMClogit.Rd MCMCpack/man/MCMCirtKdRob.Rd MCMCpack/man/MCMCirtKdHet.Rd MCMCpack/man/MCMCirtKd.Rd MCMCpack/man/MCMCirtHier1d.Rd MCMCpack/man/MCMCirt1d.Rd MCMCpack/man/MCMCintervention.Rd MCMCpack/man/MCMChregress.Rd MCMCpack/man/MCMChpoisson.Rd MCMCpack/man/MCMChlogit.Rd MCMCpack/man/MCMChierEI.Rd MCMCpack/man/MCMCfactanal.Rd MCMCpack/man/MCMCdynamicIRT1d.Rd MCMCpack/man/MCMCdynamicEI.Rd MCMCpack/man/MCMCbinaryChange.Rd MCMCpack/man/MCbinomialbeta.Rd MCMCpack/man/make.breaklist.Rd MCMCpack/man/iwishart.Rd MCMCpack/man/invgamma.Rd MCMCpack/man/HMMpanelRE.Rd MCMCpack/man/HMMpanelFE.Rd MCMCpack/man/dtomog.Rd MCMCpack/man/dirichlet.Rd MCMCpack/man/choicevar.Rd MCMCpack/man/BayesFactor.Rd MCMCpack/inst/ MCMCpack/inst/CITATION MCMCpack/HISTORY MCMCpack/DESCRIPTION MCMCpack/data/ MCMCpack/data/SupremeCourt.rda MCMCpack/data/Senate.rda MCMCpack/data/Rehnquist.rda MCMCpack/data/PErisk.rda MCMCpack/data/Nethvote.rda MCMCpack/configure.ac MCMCpack/configure MCMCpack/cleanup sudo -u fink-bld [ENV] sh -c /tmp/fink.bwOD9 /tmp/fink.ySCCD #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-mcmcpack-r30-1.3-3-1/MCMCpack/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R pushd .. /sw/build.build/cran-mcmcpack-r30-1.3-3-1 /sw/build.build/cran-mcmcpack-r30-1.3-3-1/MCMCpack if [[ 3.0 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes MCMCpack else $BIN_R --verbose CMD build --no-vignettes MCMCpack fi * checking for file 'MCMCpack/DESCRIPTION' ... OK * preparing 'MCMCpack': * checking DESCRIPTION meta-information ... OK * cleaning src * running 'cleanup' * checking for LF line-endings in source and make files * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added * building 'MCMCpack_1.3-3.tar.gz' /bin/rm -rf /sw/build.build/root-cran-mcmcpack-r30-1.3-3-1 /bin/mkdir -p /sw/build.build/root-cran-mcmcpack-r30-1.3-3-1/sw /bin/mkdir -p /sw/build.build/root-cran-mcmcpack-r30-1.3-3-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-mcmcpack-r30-1.3-3-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.0WxoI /tmp/fink.z3TEA #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R mkdir -p /sw/build.build/root-cran-mcmcpack-r30-1.3-3-1/sw/lib/R/3.0/site-library pushd /sw/build.build/cran-mcmcpack-r30-1.3-3-1/MCMCpack/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-mcmcpack-r30-1.3-3-1/sw/lib/R/3.0/site-library MCMCpack /sw/build.build/cran-mcmcpack-r30-1.3-3-1 /sw/build.build/cran-mcmcpack-r30-1.3-3-1/MCMCpack * installing *source* package 'MCMCpack' ... ** package 'MCMCpack' successfully unpacked and MD5 sums checked checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether flag-sort -r g++ accepts -g... yes checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking ieeefp.h usability... no checking ieeefp.h presence... no checking for ieeefp.h... no checking for trunc... yes configure: creating ./config.status config.status: creating src/Makevars ** libs flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c HMMmultivariateGaussian.cc -o HMMmultivariateGaussian.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c HMMpanelFE.cc -o HMMpanelFE.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c HMMpanelRE.cc -o HMMpanelRE.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCSVDreg.cc -o MCMCSVDreg.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCbinaryChange.cc -o MCMCbinaryChange.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCdynamicEI.cc -o MCMCdynamicEI.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCdynamicIRT1d-b.cc -o MCMCdynamicIRT1d-b.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCdynamicIRT1d.cc -o MCMCdynamicIRT1d.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCfactanal.cc -o MCMCfactanal.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMChierBetaBinom.cc -o MCMChierBetaBinom.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMChierEI.cc -o MCMChierEI.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMChlogit.cc -o MCMChlogit.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMChpoisson.cc -o MCMChpoisson.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMChregress.cc -o MCMChregress.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCintervention.cc -o MCMCintervention.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCirt1d.cc -o MCMCirt1d.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCirtHier1d.cc -o MCMCirtHier1d.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCirtKdHet.cc -o MCMCirtKdHet.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCirtKdRob.cc -o MCMCirtKdRob.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMClogit.cc -o MCMClogit.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMClogituserprior.cc -o MCMClogituserprior.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCmetrop1R.cc -o MCMCmetrop1R.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCmixfactanal.cc -o MCMCmixfactanal.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCmnlMH.cc -o MCMCmnlMH.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCmnlslice.cc -o MCMCmnlslice.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCoprobit.cc -o MCMCoprobit.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCoprobitChange.cc -o MCMCoprobitChange.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCordfactanal.cc -o MCMCordfactanal.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCpoisson.cc -o MCMCpoisson.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCpoissonChange.cc -o MCMCpoissonChange.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCprobit.cc -o MCMCprobit.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCprobitChange.cc -o MCMCprobitChange.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCprobitres.cc -o MCMCprobitres.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCquantreg.cc -o MCMCquantreg.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCregress.cc -o MCMCregress.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCregressChange.cc -o MCMCregressChange.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCresidualBreakAnalysis.cc -o MCMCresidualBreakAnalysis.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c MCMCtobit.cc -o MCMCtobit.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c SSVSquantreg.cc -o SSVSquantreg.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DSCYTHE_COMPILE_DIRECT -DSCYTHE_DEBUG=0 -DSCYTHE_RPACK -DHAVE_TRUNC -DHAVE_TRUNC -I/sw/include -fPIC -g -O3 -c lecuyer.cc -o lecuyer.o flag-sort -r g++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib -o MCMCpack.dylib HMMmultivariateGaussian.o HMMpanelFE.o HMMpanelRE.o MCMCSVDreg.o MCMCbinaryChange.o MCMCdynamicEI.o MCMCdynamicIRT1d-b.o MCMCdynamicIRT1d.o MCMCfactanal.o MCMChierBetaBinom.o MCMChierEI.o MCMChlogit.o MCMChpoisson.o MCMChregress.o MCMCintervention.o MCMCirt1d.o MCMCirtHier1d.o MCMCirtKdHet.o MCMCirtKdRob.o MCMClogit.o MCMClogituserprior.o MCMCmetrop1R.o MCMCmixfactanal.o MCMCmnlMH.o MCMCmnlslice.o MCMCoprobit.o MCMCoprobitChange.o MCMCordfactanal.o MCMCpoisson.o MCMCpoissonChange.o MCMCprobit.o MCMCprobitChange.o MCMCprobitres.o MCMCquantreg.o MCMCregress.o MCMCregressChange.o MCMCresidualBreakAnalysis.o MCMCtobit.o SSVSquantreg.o lecuyer.o -L/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation installing to /sw/build.build/root-cran-mcmcpack-r30-1.3-3-1/sw/lib/R/3.0/site-library/MCMCpack/libs ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (MCMCpack) install_name_tool -id /sw/lib/R/3.0/site-library/MCMCpack/libs/MCMCpack.dylib /sw/build.build/root-cran-mcmcpack-r30-1.3-3-1/sw/lib/R/3.0/site-library/MCMCpack/libs/MCMCpack.dylib sudo -u fink-bld [ENV] sh -c /tmp/fink.3CfFK /bin/rm -f /sw/build.build/root-cran-mcmcpack-r30-1.3-3-1/sw/info/dir /sw/build.build/root-cran-mcmcpack-r30-1.3-3-1/sw/info/dir.old /sw/build.build/root-cran-mcmcpack-r30-1.3-3-1/sw/share/info/dir /sw/build.build/root-cran-mcmcpack-r30-1.3-3-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-mcmcpack-r30-1.3-3-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-mcmcpack-r30' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-mcmcpack-r30_1.3-3-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-mcmcpack-r30-1.3-3-1 (Reading database ... 59656 files and directories currently installed.) Removing fink-buildlock-cran-mcmcpack-r30-1.3-3-1 ...