printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-mlbench-r31 2>&1 The package 'cran-mlbench-r31' will be built without being installed. Reading build dependency for cran-mlbench-r31-2.1-1-2... Reading dependency for cran-mlbench-r31-2.1-1-2... Reading build conflict for cran-mlbench-r31-2.1-1-2... The following package will be rebuilt: cran-mlbench-r31 Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-mlbench-r31-2.1-1-2 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-mlbench-r31-2.1-1-2' in `/sw/build.build/fink-buildlock-cran-mlbench-r31-2.1-1-2_2014.07.30-21.28.13_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-mlbench-r31-2.1-1-2_2014.07.30-21.28.13_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-mlbench-r31-2.1-1-2. (Reading database ... 7371 files and directories currently installed.) Unpacking fink-buildlock-cran-mlbench-r31-2.1-1-2 (from .../fink-buildlock-cran-mlbench-r31-2.1-1-2_2014.07.30-21.28.13_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-mlbench-r31-2.1-1-2 (2014.07.30-21.28.13) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.oWZAL env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/mlbench_2.1-1.tar.gz mlbench/ mlbench/MD5 mlbench/NAMESPACE mlbench/Data-Administration.R mlbench/data/ mlbench/data/Sonar.rda mlbench/data/Servo.rda mlbench/data/HouseVotes84.rda mlbench/data/BostonHousing.rda mlbench/data/Glass.rda mlbench/data/Soybean.rda mlbench/data/BreastCancer.rda mlbench/data/Zoo.rda mlbench/data/Vehicle.rda mlbench/data/Ozone.rda mlbench/data/Satellite.rda mlbench/data/PimaIndiansDiabetes.rda mlbench/data/Vowel.rda mlbench/data/Shuttle.rda mlbench/data/Ionosphere.rda mlbench/data/PimaIndiansDiabetes2.rda mlbench/data/DNA.rda mlbench/data/BostonHousing2.rda mlbench/data/LetterRecognition.rda mlbench/README mlbench/inst/ mlbench/inst/CITATION mlbench/man/ mlbench/man/Shuttle.Rd mlbench/man/Vehicle.Rd mlbench/man/Sonar.Rd mlbench/man/mlbench.cuboids.Rd mlbench/man/HouseVotes84.Rd mlbench/man/DNA.Rd mlbench/man/mlbench.xor.Rd mlbench/man/Ionosphere.Rd mlbench/man/as.data.frame.mlbench.Rd mlbench/man/mlbench.circle.Rd mlbench/man/mlbench.spirals.Rd mlbench/man/Ozone.Rd mlbench/man/mlbench.shapes.Rd mlbench/man/BreastCancer.Rd mlbench/man/mlbench.friedman3.Rd mlbench/man/Servo.Rd mlbench/man/mlbench.2dnormals.Rd mlbench/man/BostonHousing.Rd mlbench/man/Glass.Rd mlbench/man/mlbench.friedman2.Rd mlbench/man/Vowel.Rd mlbench/man/mlbench.ringnorm.Rd mlbench/man/mlbench.cassini.Rd mlbench/man/Zoo.Rd mlbench/man/mlbench.smiley.Rd mlbench/man/Satellite.Rd mlbench/man/mlbench.peak.Rd mlbench/man/mlbench.simplex.Rd mlbench/man/mlbench.waveform.Rd mlbench/man/PimaIndiansDiabetes.Rd mlbench/man/plot.mlbench.Rd mlbench/man/mlbench.friedman1.Rd mlbench/man/mlbench.twonorm.Rd mlbench/man/bayesclass.Rd mlbench/man/LetterRecognition.Rd mlbench/man/mlbench.threenorm.Rd mlbench/man/mlbench.hypercube.Rd mlbench/man/Soybean.Rd mlbench/src/ mlbench/src/waveform.c mlbench/NEWS mlbench/DESCRIPTION mlbench/R/ mlbench/R/mlbench-regression.R mlbench/R/mlbench-class.R sudo -u fink-bld [ENV] sh -c /tmp/fink.jccQe /tmp/fink.KuNk2 #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-mlbench-r31-2.1-1-2/mlbench/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R pushd .. /sw/build.build/cran-mlbench-r31-2.1-1-2 /sw/build.build/cran-mlbench-r31-2.1-1-2/mlbench if [[ 3.1 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes mlbench else $BIN_R --verbose CMD build --no-vignettes mlbench fi * checking for file 'mlbench/DESCRIPTION' ... OK * preparing 'mlbench': * checking DESCRIPTION meta-information ... OK * cleaning src * checking for LF line-endings in source and make files * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added * building 'mlbench_2.1-1.tar.gz' /bin/rm -rf /sw/build.build/root-cran-mlbench-r31-2.1-1-2 /bin/mkdir -p /sw/build.build/root-cran-mlbench-r31-2.1-1-2/sw /bin/mkdir -p /sw/build.build/root-cran-mlbench-r31-2.1-1-2/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-mlbench-r31-2.1-1-2 sudo -u fink-bld [ENV] sh -c /tmp/fink.M_bap /tmp/fink.y668f #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R mkdir -p /sw/build.build/root-cran-mlbench-r31-2.1-1-2/sw/lib/R/3.1/site-library pushd /sw/build.build/cran-mlbench-r31-2.1-1-2/mlbench/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-mlbench-r31-2.1-1-2/sw/lib/R/3.1/site-library mlbench /sw/build.build/cran-mlbench-r31-2.1-1-2 /sw/build.build/cran-mlbench-r31-2.1-1-2/mlbench * installing *source* package 'mlbench' ... ** package 'mlbench' successfully unpacked and MD5 sums checked ** libs flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c waveform.c -o waveform.o flag-sort -r gcc -ffor-scope -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib -o mlbench.dylib waveform.o -L/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation installing to /sw/build.build/root-cran-mlbench-r31-2.1-1-2/sw/lib/R/3.1/site-library/mlbench/libs ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (mlbench) install_name_tool -id /sw/lib/R/3.1/site-library/mlbench/libs/mlbench.dylib /sw/build.build/root-cran-mlbench-r31-2.1-1-2/sw/lib/R/3.1/site-library/mlbench/libs/mlbench.dylib sudo -u fink-bld [ENV] sh -c /tmp/fink.fKLp5 /bin/rm -f /sw/build.build/root-cran-mlbench-r31-2.1-1-2/sw/info/dir /sw/build.build/root-cran-mlbench-r31-2.1-1-2/sw/info/dir.old /sw/build.build/root-cran-mlbench-r31-2.1-1-2/sw/share/info/dir /sw/build.build/root-cran-mlbench-r31-2.1-1-2/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-mlbench-r31-2.1-1-2 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-mlbench-r31' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-mlbench-r31_2.1-1-2_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-mlbench-r31-2.1-1-2 (Reading database ... 7372 files and directories currently installed.) Removing fink-buildlock-cran-mlbench-r31-2.1-1-2 ...