printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-modeltools-r30 2>&1 The package 'cran-modeltools-r30' will be built without being installed. Reading build dependency for cran-modeltools-r30-0.2-21-1... Reading dependency for cran-modeltools-r30-0.2-21-1... Reading build conflict for cran-modeltools-r30-0.2-21-1... The package 'r-base30-dev' will be installed. Reading dependency for r-base30-dev-3.0.3-8... Reading runtime dependency for r-base30-dev-3.0.3-8... The package 'r-base30' will be installed. Reading dependency for r-base30-3.0.3-8... Reading runtime dependency for r-base30-3.0.3-8... The package 'r-base30-shlibs' will be installed. Reading dependency for r-base30-shlibs-3.0.3-8... Reading runtime dependency for r-base30-shlibs-3.0.3-8... The following package will be rebuilt: cran-modeltools-r30 The following 3 additional packages will be installed: r-base30 r-base30-dev r-base30-shlibs Do you want to continue? [Y/n] (assuming default) Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base30_3.0.3-8_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base30-shlibs_3.0.3-8_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base30-dev_3.0.3-8_darwin-x86_64.deb Selecting previously deselected package r-base30. (Reading database ... 7557 files and directories currently installed.) Unpacking r-base30 (from .../r-base30_3.0.3-8_darwin-x86_64.deb) ... Selecting previously deselected package r-base30-shlibs. Unpacking r-base30-shlibs (from .../r-base30-shlibs_3.0.3-8_darwin-x86_64.deb) ... Selecting previously deselected package r-base30-dev. dpkg: considering removing r-base215-dev in favour of r-base30-dev ... dpkg: yes, will remove r-base215-dev in favour of r-base30-dev. Unpacking r-base30-dev (from .../r-base30-dev_3.0.3-8_darwin-x86_64.deb) ... Setting up r-base30-shlibs (3.0.3-8) ... Setting up r-base30-dev (3.0.3-8) ... Setting up r-base30 (3.0.3-8) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-modeltools-r30-0.2-21-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-modeltools-r30-0.2-21-1' in `/sw/build.build/fink-buildlock-cran-modeltools-r30-0.2-21-1_2014.07.27-11.28.06_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-modeltools-r30-0.2-21-1_2014.07.27-11.28.06_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-modeltools-r30-0.2-21-1. (Reading database ... 9487 files and directories currently installed.) Unpacking fink-buildlock-cran-modeltools-r30-0.2-21-1 (from .../fink-buildlock-cran-modeltools-r30-0.2-21-1_2014.07.27-11.28.06_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-modeltools-r30-0.2-21-1 (2014.07.27-11.28.06) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.Wg1FW env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/modeltools_0.2-21.tar.gz modeltools/ modeltools/inst/ modeltools/inst/NEWS modeltools/tests/ modeltools/tests/regtest.R modeltools/NAMESPACE modeltools/NEWS modeltools/R/ modeltools/R/Utilities.R modeltools/R/Data.R modeltools/R/linearModel.R modeltools/R/glinearModel.R modeltools/R/NAhandling.R modeltools/R/survReg.R modeltools/R/Methods.R modeltools/R/Generics.R modeltools/R/Classes.R modeltools/MD5 modeltools/DESCRIPTION modeltools/man/ modeltools/man/Predict.Rd modeltools/man/FormulaParts-class.Rd modeltools/man/ModelEnvFormula.Rd modeltools/man/StatModelCapabilities-class.Rd modeltools/man/StatModel-class.Rd modeltools/man/MEapply.Rd modeltools/man/ModelEnvMatrix.Rd modeltools/man/info.Rd modeltools/man/Generics.Rd modeltools/man/ModelEnv-class.Rd modeltools/man/ModelEnvFormula-class.Rd modeltools/cleanup sudo -u fink-bld [ENV] sh -c /tmp/fink.toJzS /tmp/fink.GdaLL #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-modeltools-r30-0.2-21-1/modeltools/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R pushd .. /sw/build.build/cran-modeltools-r30-0.2-21-1 /sw/build.build/cran-modeltools-r30-0.2-21-1/modeltools if [[ 3.0 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes modeltools else $BIN_R --verbose CMD build --no-vignettes modeltools fi * checking for file 'modeltools/DESCRIPTION' ... OK * preparing 'modeltools': * checking DESCRIPTION meta-information ... OK * running 'cleanup' * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building 'modeltools_0.2-21.tar.gz' /bin/rm -rf /sw/build.build/root-cran-modeltools-r30-0.2-21-1 /bin/mkdir -p /sw/build.build/root-cran-modeltools-r30-0.2-21-1/sw /bin/mkdir -p /sw/build.build/root-cran-modeltools-r30-0.2-21-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-modeltools-r30-0.2-21-1 sudo -u fink-bld [ENV] sh -c /tmp/fink._X6aI /tmp/fink.gYDX3 #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R mkdir -p /sw/build.build/root-cran-modeltools-r30-0.2-21-1/sw/lib/R/3.0/site-library pushd /sw/build.build/cran-modeltools-r30-0.2-21-1/modeltools/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-modeltools-r30-0.2-21-1/sw/lib/R/3.0/site-library modeltools /sw/build.build/cran-modeltools-r30-0.2-21-1 /sw/build.build/cran-modeltools-r30-0.2-21-1/modeltools * installing *source* package 'modeltools' ... ** package 'modeltools' successfully unpacked and MD5 sums checked ** R ** inst ** preparing package for lazy loading Creating a generic function for 'na.fail' from package 'stats' in package 'modeltools' Creating a generic function for 'na.pass' from package 'stats' in package 'modeltools' Creating a generic function for 'na.omit' from package 'stats' in package 'modeltools' Creating a generic function from function 'MEapply' in package 'modeltools' ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (modeltools) sudo -u fink-bld [ENV] sh -c /tmp/fink.iNI7X /bin/rm -f /sw/build.build/root-cran-modeltools-r30-0.2-21-1/sw/info/dir /sw/build.build/root-cran-modeltools-r30-0.2-21-1/sw/info/dir.old /sw/build.build/root-cran-modeltools-r30-0.2-21-1/sw/share/info/dir /sw/build.build/root-cran-modeltools-r30-0.2-21-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-modeltools-r30-0.2-21-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-modeltools-r30' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-modeltools-r30_0.2-21-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-modeltools-r30-0.2-21-1 (Reading database ... 9488 files and directories currently installed.) Removing fink-buildlock-cran-modeltools-r30-0.2-21-1 ...