printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-modeltools-r31 2>&1 The package 'cran-modeltools-r31' will be built without being installed. Reading build dependency for cran-modeltools-r31-0.2-21-1... Reading dependency for cran-modeltools-r31-0.2-21-1... Reading build conflict for cran-modeltools-r31-0.2-21-1... The package 'r-base31-dev' will be installed. Reading dependency for r-base31-dev-3.1.1-2... Reading runtime dependency for r-base31-dev-3.1.1-2... The package 'r-base31' will be installed. Reading dependency for r-base31-3.1.1-2... Reading runtime dependency for r-base31-3.1.1-2... The package 'r-base31-shlibs' will be installed. Reading dependency for r-base31-shlibs-3.1.1-2... Reading runtime dependency for r-base31-shlibs-3.1.1-2... The package 'flag-sort' will be installed. Reading dependency for flag-sort-0.5-1... Reading runtime dependency for flag-sort-0.5-1... The package 'cairo-shlibs' will be installed. Reading dependency for cairo-shlibs-1.12.14-1... Reading runtime dependency for cairo-shlibs-1.12.14-1... The package 'gcc49-shlibs' will be installed. Reading dependency for gcc49-shlibs-4.9.1-1000... Reading runtime dependency for gcc49-shlibs-4.9.1-1000... The package 'glib2-shlibs' will be installed. Reading dependency for glib2-shlibs-2.22.4-8... Reading runtime dependency for glib2-shlibs-2.22.4-8... The package 'libicu48-shlibs' will be installed. Reading dependency for libicu48-shlibs-4.8.1.1-2... Reading runtime dependency for libicu48-shlibs-4.8.1.1-2... The package 'libjpeg9-shlibs' will be installed. Reading dependency for libjpeg9-shlibs-9a-1... Reading runtime dependency for libjpeg9-shlibs-9a-1... The package 'liblzma5-shlibs' will be installed. Reading dependency for liblzma5-shlibs-5.0.5-2... Reading runtime dependency for liblzma5-shlibs-5.0.5-2... The package 'libpng16-shlibs' will be installed. Reading dependency for libpng16-shlibs-1.6.12-1... Reading runtime dependency for libpng16-shlibs-1.6.12-1... The package 'libtiff5-shlibs' will be installed. Reading dependency for libtiff5-shlibs-4.0.3-5... Reading runtime dependency for libtiff5-shlibs-4.0.3-5... The package 'pango1-xft2-ft219-shlibs' will be installed. Reading dependency for pango1-xft2-ft219-shlibs-1.24.5-9... Reading runtime dependency for pango1-xft2-ft219-shlibs-1.24.5-9... The package 'libpcre1-shlibs' will be installed. Reading dependency for libpcre1-shlibs-8.35-1... Reading runtime dependency for libpcre1-shlibs-8.35-1... The package 'readline6-shlibs' will be installed. Reading dependency for readline6-shlibs-6.3.6-1... Reading runtime dependency for readline6-shlibs-6.3.6-1... The package 'tcltk' will be installed. Reading dependency for tcltk-8.6.1-104... Reading runtime dependency for tcltk-8.6.1-104... The package 'fontconfig2-shlibs' will be installed. Reading dependency for fontconfig2-shlibs-2.10.2-1... Reading runtime dependency for fontconfig2-shlibs-2.10.2-1... The package 'freetype219-shlibs' will be installed. Reading dependency for freetype219-shlibs-2.4.12-1... Reading runtime dependency for freetype219-shlibs-2.4.12-1... The package 'pixman-shlibs' will be installed. Reading dependency for pixman-shlibs-0.32.4-1... Reading runtime dependency for pixman-shlibs-0.32.4-1... The package 'xdg-base' will be installed. Reading dependency for xdg-base-0.8-2... Reading runtime dependency for xdg-base-0.8-2... The package 'libjbig-shlibs' will be installed. Reading dependency for libjbig-shlibs-2.0-1... Reading runtime dependency for libjbig-shlibs-2.0-1... The package 'libthai-shlibs' will be installed. Reading dependency for libthai-shlibs-0.1.20-1... Reading runtime dependency for libthai-shlibs-0.1.20-1... The package 'xft2-shlibs' will be installed. Reading dependency for xft2-shlibs-2.2.0-3... Reading runtime dependency for xft2-shlibs-2.2.0-3... The package 'tcltk-shlibs' will be installed. Reading dependency for tcltk-shlibs-8.6.1-104... Reading runtime dependency for tcltk-shlibs-8.6.1-104... The package 'fontconfig-config' will be installed. Reading dependency for fontconfig-config-2.10.2-1... Reading runtime dependency for fontconfig-config-2.10.2-1... The package 'expat1-shlibs' will be installed. Reading dependency for expat1-shlibs-2.1.0-1... Reading runtime dependency for expat1-shlibs-2.1.0-1... The package 'libdatrie1-shlibs' will be installed. Reading dependency for libdatrie1-shlibs-0.2.8-2... Reading runtime dependency for libdatrie1-shlibs-0.2.8-2... The package 'libthai' will be installed. Reading dependency for libthai-0.1.20-1... Reading runtime dependency for libthai-0.1.20-1... The following package will be rebuilt: cran-modeltools-r31 The following 28 additional packages will be installed: cairo-shlibs expat1-shlibs flag-sort fontconfig-config fontconfig2-shlibs freetype219-shlibs gcc49-shlibs glib2-shlibs libdatrie1-shlibs libicu48-shlibs libjbig-shlibs libjpeg9-shlibs liblzma5-shlibs libpcre1-shlibs libpng16-shlibs libthai libthai-shlibs libtiff5-shlibs pango1-xft2-ft219-shlibs pixman-shlibs r-base31 r-base31-dev r-base31-shlibs readline6-shlibs tcltk tcltk-shlibs xdg-base xft2-shlibs Do you want to continue? [Y/n] (assuming default) Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/expat1-shlibs_2.1.0-1_darwin-x86_64.deb Selecting previously deselected package expat1-shlibs. (Reading database ... 4296 files and directories currently installed.) Unpacking expat1-shlibs (from .../expat1-shlibs_2.1.0-1_darwin-x86_64.deb) ... Setting up expat1-shlibs (2.1.0-1) ... 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All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/tcltk_8.6.1-104_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/tcltk-shlibs_8.6.1-104_darwin-x86_64.deb Selecting previously deselected package tcltk. (Reading database ... 4842 files and directories currently installed.) Unpacking tcltk (from .../tcltk_8.6.1-104_darwin-x86_64.deb) ... Selecting previously deselected package tcltk-shlibs. Unpacking tcltk-shlibs (from .../tcltk-shlibs_8.6.1-104_darwin-x86_64.deb) ... Setting up tcltk-shlibs (8.6.1-104) ... Setting up tcltk (8.6.1-104) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base31_3.1.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base31-shlibs_3.1.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base31-dev_3.1.1-2_darwin-x86_64.deb Selecting previously deselected package r-base31. (Reading database ... 5318 files and directories currently installed.) Unpacking r-base31 (from .../r-base31_3.1.1-2_darwin-x86_64.deb) ... Selecting previously deselected package r-base31-shlibs. Unpacking r-base31-shlibs (from .../r-base31-shlibs_3.1.1-2_darwin-x86_64.deb) ... Selecting previously deselected package r-base31-dev. Unpacking r-base31-dev (from .../r-base31-dev_3.1.1-2_darwin-x86_64.deb) ... Setting up r-base31-shlibs (3.1.1-2) ... Setting up r-base31-dev (3.1.1-2) ... Setting up r-base31 (3.1.1-2) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-modeltools-r31-0.2-21-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-modeltools-r31-0.2-21-1' in `/sw/build.build/fink-buildlock-cran-modeltools-r31-0.2-21-1_2014.07.27-08.13.22_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-modeltools-r31-0.2-21-1_2014.07.27-08.13.22_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-modeltools-r31-0.2-21-1. (Reading database ... 7285 files and directories currently installed.) Unpacking fink-buildlock-cran-modeltools-r31-0.2-21-1 (from .../fink-buildlock-cran-modeltools-r31-0.2-21-1_2014.07.27-08.13.22_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-modeltools-r31-0.2-21-1 (2014.07.27-08.13.22) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.q9fl6 env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/modeltools_0.2-21.tar.gz modeltools/ modeltools/inst/ modeltools/inst/NEWS modeltools/tests/ modeltools/tests/regtest.R modeltools/NAMESPACE modeltools/NEWS modeltools/R/ modeltools/R/Utilities.R modeltools/R/Data.R modeltools/R/linearModel.R modeltools/R/glinearModel.R modeltools/R/NAhandling.R modeltools/R/survReg.R modeltools/R/Methods.R modeltools/R/Generics.R modeltools/R/Classes.R modeltools/MD5 modeltools/DESCRIPTION modeltools/man/ modeltools/man/Predict.Rd modeltools/man/FormulaParts-class.Rd modeltools/man/ModelEnvFormula.Rd modeltools/man/StatModelCapabilities-class.Rd modeltools/man/StatModel-class.Rd modeltools/man/MEapply.Rd modeltools/man/ModelEnvMatrix.Rd modeltools/man/info.Rd modeltools/man/Generics.Rd modeltools/man/ModelEnv-class.Rd modeltools/man/ModelEnvFormula-class.Rd modeltools/cleanup sudo -u fink-bld [ENV] sh -c /tmp/fink.Rqa29 /tmp/fink.j4LZs #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-modeltools-r31-0.2-21-1/modeltools/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R pushd .. /sw/build.build/cran-modeltools-r31-0.2-21-1 /sw/build.build/cran-modeltools-r31-0.2-21-1/modeltools if [[ 3.1 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes modeltools else $BIN_R --verbose CMD build --no-vignettes modeltools fi * checking for file 'modeltools/DESCRIPTION' ... OK * preparing 'modeltools': * checking DESCRIPTION meta-information ... OK * running 'cleanup' * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building 'modeltools_0.2-21.tar.gz' /bin/rm -rf /sw/build.build/root-cran-modeltools-r31-0.2-21-1 /bin/mkdir -p /sw/build.build/root-cran-modeltools-r31-0.2-21-1/sw /bin/mkdir -p /sw/build.build/root-cran-modeltools-r31-0.2-21-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-modeltools-r31-0.2-21-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.Cw_Xr /tmp/fink.Fn5uf #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R mkdir -p /sw/build.build/root-cran-modeltools-r31-0.2-21-1/sw/lib/R/3.1/site-library pushd /sw/build.build/cran-modeltools-r31-0.2-21-1/modeltools/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-modeltools-r31-0.2-21-1/sw/lib/R/3.1/site-library modeltools /sw/build.build/cran-modeltools-r31-0.2-21-1 /sw/build.build/cran-modeltools-r31-0.2-21-1/modeltools * installing *source* package 'modeltools' ... ** package 'modeltools' successfully unpacked and MD5 sums checked ** R ** inst ** preparing package for lazy loading Creating a generic function for 'na.fail' from package 'stats' in package 'modeltools' Creating a generic function for 'na.pass' from package 'stats' in package 'modeltools' Creating a generic function for 'na.omit' from package 'stats' in package 'modeltools' Creating a generic function from function 'MEapply' in package 'modeltools' ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (modeltools) sudo -u fink-bld [ENV] sh -c /tmp/fink.Sgn7y /bin/rm -f /sw/build.build/root-cran-modeltools-r31-0.2-21-1/sw/info/dir /sw/build.build/root-cran-modeltools-r31-0.2-21-1/sw/info/dir.old /sw/build.build/root-cran-modeltools-r31-0.2-21-1/sw/share/info/dir /sw/build.build/root-cran-modeltools-r31-0.2-21-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-modeltools-r31-0.2-21-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-modeltools-r31' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-modeltools-r31_0.2-21-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-modeltools-r31-0.2-21-1 (Reading database ... 7286 files and directories currently installed.) Removing fink-buildlock-cran-modeltools-r31-0.2-21-1 ...