printf ' ' | fink --no-use-binary-dist --yes rebuild cran-mvpart-r30 2>&1 The package 'cran-mvpart-r30' will be built without being installed. Reading build dependency for cran-mvpart-r30-1.6-1-1... Reading dependency for cran-mvpart-r30-1.6-1-1... Reading build conflict for cran-mvpart-r30-1.6-1-1... The following package will be rebuilt: cran-mvpart-r30 Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-mvpart-r30-1.6-1-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-mvpart-r30-1.6-1-1' in `/sw/build.build/fink-buildlock-cran-mvpart-r30-1.6-1-1_2014.08.04-23.41.12_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-mvpart-r30-1.6-1-1_2014.08.04-23.41.12_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-mvpart-r30-1.6-1-1. (Reading database ... 7742 files and directories currently installed.) Unpacking fink-buildlock-cran-mvpart-r30-1.6-1-1 (from .../fink-buildlock-cran-mvpart-r30-1.6-1-1_2014.08.04-23.41.12_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-mvpart-r30-1.6-1-1 (2014.08.04-23.41.12) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.eHKGa env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/mvpart_1.6-1.tar.gz mvpart/ mvpart/MD5 mvpart/src/ mvpart/src/rpartproto.h mvpart/src/rpart_callback.c mvpart/src/vgdist.c mvpart/src/pred_rpart.c mvpart/src/make_cp_table.c mvpart/src/xval.c mvpart/src/surrogate.c mvpart/src/rpartexp2.c mvpart/src/poisson.c mvpart/src/node.h mvpart/src/gini.c mvpart/src/insert_split.c mvpart/src/mrt.c mvpart/src/partition.c mvpart/src/dist.c mvpart/src/fix_cp.c mvpart/src/s_to_rp.c mvpart/src/rpcountup.c mvpart/src/mysort.c mvpart/src/nodesplit.c mvpart/src/formatg.c mvpart/src/s_xpred.c mvpart/src/rpmatrix.c mvpart/src/xdiss.c mvpart/src/anova.c mvpart/src/rundown2.c mvpart/src/func_table.h mvpart/src/rundown.c mvpart/src/graycode.c mvpart/src/usersplit.c mvpart/src/choose_surg.c mvpart/src/free_tree.c mvpart/src/bsplit.c mvpart/src/make_cp_list.c mvpart/src/rpartS.h mvpart/src/rpart.h mvpart/src/branch.c mvpart/src/rpart.c mvpart/R/ mvpart/R/string.bounding.box.R mvpart/R/rpart.exp.R mvpart/R/post.R mvpart/R/rpart.mrt.R mvpart/R/cmds.diss.R mvpart/R/makeform.R mvpart/R/snip.rpart.R mvpart/R/rpart.matrix.R mvpart/R/descendants.R mvpart/R/rpart.class.R mvpart/R/scaler.R mvpart/R/rpartco.R mvpart/R/rsq.rpart.R mvpart/R/meanvar.R mvpart/R/post.rpart.R mvpart/R/mvpart.R mvpart/R/prune.rpart.R mvpart/R/gdist.R mvpart/R/snip.rpart.mouse.R mvpart/R/trclcomp.R mvpart/R/labels.rpart.R mvpart/R/distfull.R mvpart/R/noGenerics.R mvpart/R/summary.rpart.R mvpart/R/xpred.rpart.R mvpart/R/predict.rpart.R mvpart/R/rpart.dist.R mvpart/R/plotcp.R mvpart/R/rpart.control.R mvpart/R/packageName.R mvpart/R/rpart.poisson.R mvpart/R/prune.R mvpart/R/na.rpart.R mvpart/R/formatg.R mvpart/R/plot.rpart.R mvpart/R/printcp.R mvpart/R/xdiss.R mvpart/R/rpart.R mvpart/R/pred.rpart.R mvpart/R/print.rpart.R mvpart/R/rpartcallback.R mvpart/R/rpart.anova.R mvpart/R/meanvar.rpart.R mvpart/R/model.frame.rpart.R mvpart/R/path.rpart.R mvpart/R/tree.depth.R mvpart/R/sub.barplot.R mvpart/R/rpart.branch.R mvpart/R/rpconvert.R mvpart/R/residuals.rpart.R mvpart/R/rpart.pca.R mvpart/R/text.rpart.R mvpart/R/node.match.R mvpart/NAMESPACE mvpart/Changelog mvpart/man/ mvpart/man/print.rpart.Rd mvpart/man/summary.rpart.Rd mvpart/man/rpconvert.Rd mvpart/man/makeform.Rd mvpart/man/string.bounding.box.Rd mvpart/man/na.rpart.Rd mvpart/man/rpart.poisson.Rd mvpart/man/cmds.diss.Rd mvpart/man/rpart.object.Rd mvpart/man/rpart.Rd mvpart/man/prune.rpart.Rd mvpart/man/snip.rpart.mouse.Rd mvpart/man/solder.Rd mvpart/man/rpart.anova.Rd mvpart/man/path.rpart.Rd mvpart/man/rpart.mrt.Rd mvpart/man/trclcomp.Rd mvpart/man/tree.depth.Rd mvpart/man/scaler.Rd mvpart/man/rpart.class.Rd mvpart/man/text.rpart.Rd mvpart/man/rsq.rpart.Rd mvpart/man/rpart.exp.Rd mvpart/man/rpart.pca.Rd mvpart/man/sub.barplot.Rd mvpart/man/rpartco.Rd mvpart/man/xpred.rpart.Rd mvpart/man/model.frame.rpart.Rd mvpart/man/rpart.matrix.Rd mvpart/man/rpart.branch.Rd mvpart/man/distfull.Rd mvpart/man/kyphosis.Rd mvpart/man/printcp.Rd mvpart/man/gdist.Rd mvpart/man/residuals.rpart.Rd mvpart/man/predict.rpart.Rd mvpart/man/descendants.Rd mvpart/man/eqscplt.Rd mvpart/man/car.test.frame.Rd mvpart/man/node.match.Rd mvpart/man/spider.Rd mvpart/man/plotcp.Rd mvpart/man/meanvar.rpart.Rd mvpart/man/labels.rpart.Rd mvpart/man/mvpart.Rd mvpart/man/post.rpart.Rd mvpart/man/rpart.control.Rd mvpart/man/xdiss.Rd mvpart/man/plot.rpart.Rd mvpart/man/snip.rpart.Rd mvpart/man/formatg.Rd mvpart/man/rpart.dist.Rd mvpart/data/ mvpart/data/solder.tab.gz mvpart/data/spider.tab.gz mvpart/data/kyphosis.tab.gz mvpart/data/car.test.frame.csv.gz mvpart/DESCRIPTION mvpart/Readme mvpart/PORTING sudo -u fink-bld [ENV] sh -c /tmp/fink.gaDtk /tmp/fink.ku4aX #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-mvpart-r30-1.6-1-1/mvpart/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R pushd .. /sw/build.build/cran-mvpart-r30-1.6-1-1 /sw/build.build/cran-mvpart-r30-1.6-1-1/mvpart if [[ 3.0 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes mvpart else $BIN_R --verbose CMD build --no-vignettes mvpart fi * checking for file 'mvpart/DESCRIPTION' ... OK * preparing 'mvpart': * checking DESCRIPTION meta-information ... OK * cleaning src * checking for LF line-endings in source and make files * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added * building 'mvpart_1.6-1.tar.gz' /bin/rm -rf /sw/build.build/root-cran-mvpart-r30-1.6-1-1 /bin/mkdir -p /sw/build.build/root-cran-mvpart-r30-1.6-1-1/sw /bin/mkdir -p /sw/build.build/root-cran-mvpart-r30-1.6-1-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-mvpart-r30-1.6-1-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.ymBAV /tmp/fink.cxq4B #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R mkdir -p /sw/build.build/root-cran-mvpart-r30-1.6-1-1/sw/lib/R/3.0/site-library pushd /sw/build.build/cran-mvpart-r30-1.6-1-1/mvpart/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-mvpart-r30-1.6-1-1/sw/lib/R/3.0/site-library mvpart /sw/build.build/cran-mvpart-r30-1.6-1-1 /sw/build.build/cran-mvpart-r30-1.6-1-1/mvpart * installing *source* package 'mvpart' ... ** package 'mvpart' successfully unpacked and MD5 sums checked ** libs flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c anova.c -o anova.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c branch.c -o branch.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c bsplit.c -o bsplit.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c choose_surg.c -o choose_surg.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c dist.c -o dist.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c fix_cp.c -o fix_cp.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c formatg.c -o formatg.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c free_tree.c -o free_tree.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c gini.c -o gini.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c graycode.c -o graycode.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c insert_split.c -o insert_split.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c make_cp_list.c -o make_cp_list.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c make_cp_table.c -o make_cp_table.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c mrt.c -o mrt.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c mysort.c -o mysort.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c nodesplit.c -o nodesplit.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c partition.c -o partition.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c poisson.c -o poisson.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c pred_rpart.c -o pred_rpart.o pred_rpart.c:106:43: warning: for loop has empty body [-Wempty-body] for (j=0; nnum[j]!= (2*node); j++); ^ pred_rpart.c:106:43: note: put the semicolon on a separate line to silence this warning pred_rpart.c:108:46: warning: for loop has empty body [-Wempty-body] for (j=0; nnum[j]!= (1+ 2*node); j++); ^ pred_rpart.c:108:46: note: put the semicolon on a separate line to silence this warning 2 warnings generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c rpart.c -o rpart.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c rpart_callback.c -o rpart_callback.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c rpartexp2.c -o rpartexp2.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c rpcountup.c -o rpcountup.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c rpmatrix.c -o rpmatrix.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c rundown.c -o rundown.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c rundown2.c -o rundown2.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c s_to_rp.c -o s_to_rp.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c s_xpred.c -o s_xpred.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c surrogate.c -o surrogate.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c usersplit.c -o usersplit.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c vgdist.c -o vgdist.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c xdiss.c -o xdiss.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c xval.c -o xval.o flag-sort -r gcc -ffor-scope -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib -o mvpart.dylib anova.o branch.o bsplit.o choose_surg.o dist.o fix_cp.o formatg.o free_tree.o gini.o graycode.o insert_split.o make_cp_list.o make_cp_table.o mrt.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o rpart.o rpart_callback.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o s_to_rp.o s_xpred.o surrogate.o usersplit.o vgdist.o xdiss.o xval.o -L/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation ld: library not found for -lintl clang: error: linker command failed with exit code 1 (use -v to see invocation) make: *** [mvpart.dylib] Error 1 ERROR: compilation failed for package 'mvpart' * removing '/sw/build.build/root-cran-mvpart-r30-1.6-1-1/sw/lib/R/3.0/site-library/mvpart' ### execution of /tmp/fink.cxq4B failed, exit code 1 ### execution of /tmp/fink.ymBAV failed, exit code 1 Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-mvpart-r30-1.6-1-1 (Reading database ... 7743 files and directories currently installed.) Removing fink-buildlock-cran-mvpart-r30-1.6-1-1 ... Failed: phase installing: cran-mvpart-r30-1.6-1-1 failed Before reporting any errors, please run "fink selfupdate" and try again. Also try using "fink configure" to set your maximum build jobs to 1 and attempt to build the package again. If you continue to have issues, please check to see if the FAQ on Fink's website solves the problem. If not, ask on one (not both, please) of these mailing lists: The Fink Users List The Fink Beginners List , with a carbon copy to the maintainer: Jack Howarth Note that this is preferable to emailing just the maintainer directly, since most fink package maintainers do not have access to all possible hardware and software configurations. Please try to include the complete error message in your report. This generally consists of a compiler line starting with e.g. "gcc" or "g++" followed by the actual error output from the compiler. Also include the following system information: Package manager version: 0.37.0 Distribution version: selfupdate-cvs Thu Jul 24 20:26:24 2014, 10.9, x86_64 Trees: local/main stable/main Xcode.app: 5.1.1 Xcode command-line tools: 6.0.0.0.1.1405597879 Max. Fink build jobs: 8