printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-polyclip-r31 2>&1 The package 'cran-polyclip-r31' will be built without being installed. Reading build dependency for cran-polyclip-r31-1.3-0-1... Reading dependency for cran-polyclip-r31-1.3-0-1... Reading build conflict for cran-polyclip-r31-1.3-0-1... The package 'r-base31-dev' will be installed. Reading dependency for r-base31-dev-3.1.1-2... Reading runtime dependency for r-base31-dev-3.1.1-2... The package 'r-base31' will be installed. Reading dependency for r-base31-3.1.1-2... Reading runtime dependency for r-base31-3.1.1-2... The package 'r-base31-shlibs' will be installed. Reading dependency for r-base31-shlibs-3.1.1-2... Reading runtime dependency for r-base31-shlibs-3.1.1-2... The following package will be rebuilt: cran-polyclip-r31 The following 3 additional packages will be installed: r-base31 r-base31-dev r-base31-shlibs Do you want to continue? [Y/n] (assuming default) Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base31_3.1.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base31-shlibs_3.1.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base31-dev_3.1.1-2_darwin-x86_64.deb Selecting previously deselected package r-base31. (Reading database ... 7475 files and directories currently installed.) Unpacking r-base31 (from .../r-base31_3.1.1-2_darwin-x86_64.deb) ... Selecting previously deselected package r-base31-shlibs. Unpacking r-base31-shlibs (from .../r-base31-shlibs_3.1.1-2_darwin-x86_64.deb) ... Selecting previously deselected package r-base31-dev. dpkg: considering removing r-base30-dev in favour of r-base31-dev ... dpkg: yes, will remove r-base30-dev in favour of r-base31-dev. Unpacking r-base31-dev (from .../r-base31-dev_3.1.1-2_darwin-x86_64.deb) ... Setting up r-base31-shlibs (3.1.1-2) ... Setting up r-base31-dev (3.1.1-2) ... Setting up r-base31 (3.1.1-2) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-polyclip-r31-1.3-0-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-polyclip-r31-1.3-0-1' in `/sw/build.build/fink-buildlock-cran-polyclip-r31-1.3-0-1_2014.08.02-05.00.44_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-polyclip-r31-1.3-0-1_2014.08.02-05.00.44_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-polyclip-r31-1.3-0-1. (Reading database ... 9393 files and directories currently installed.) Unpacking fink-buildlock-cran-polyclip-r31-1.3-0-1 (from .../fink-buildlock-cran-polyclip-r31-1.3-0-1_2014.08.02-05.00.44_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-polyclip-r31-1.3-0-1 (2014.08.02-05.00.44) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.6vbGD env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/polyclip_1.3-0.tar.gz polyclip/ polyclip/configure.ac polyclip/src/ polyclip/src/clipper.h polyclip/src/clipper.cpp polyclip/src/Makevars.in polyclip/src/Makevars.win polyclip/src/interface.cpp polyclip/NAMESPACE polyclip/R/ polyclip/R/First.R polyclip/R/clipper.R polyclip/MD5 polyclip/DESCRIPTION polyclip/configure polyclip/man/ polyclip/man/polyoffset.Rd polyclip/man/polyclip.Rd polyclip/man/polylineoffset.Rd polyclip/configure.win polyclip/cleanup sudo -u fink-bld [ENV] sh -c /tmp/fink.lu_3K /tmp/fink.mGYFv #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-polyclip-r31-1.3-0-1/polyclip/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R pushd .. /sw/build.build/cran-polyclip-r31-1.3-0-1 /sw/build.build/cran-polyclip-r31-1.3-0-1/polyclip $BIN_R --verbose CMD build --no-build-vignettes polyclip * checking for file 'polyclip/DESCRIPTION' ... OK * preparing 'polyclip': * checking DESCRIPTION meta-information ... OK * cleaning src * running 'cleanup' * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building 'polyclip_1.3-0.tar.gz' /bin/rm -rf /sw/build.build/root-cran-polyclip-r31-1.3-0-1 /bin/mkdir -p /sw/build.build/root-cran-polyclip-r31-1.3-0-1/sw /bin/mkdir -p /sw/build.build/root-cran-polyclip-r31-1.3-0-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-polyclip-r31-1.3-0-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.m3GBn /tmp/fink.H5_ku #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R mkdir -p /sw/build.build/root-cran-polyclip-r31-1.3-0-1/sw/lib/R/3.1/site-library pushd /sw/build.build/cran-polyclip-r31-1.3-0-1/polyclip/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-polyclip-r31-1.3-0-1/sw/lib/R/3.1/site-library polyclip /sw/build.build/cran-polyclip-r31-1.3-0-1 /sw/build.build/cran-polyclip-r31-1.3-0-1/polyclip * installing *source* package 'polyclip' ... ** package 'polyclip' successfully unpacked and MD5 sums checked checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether flag-sort -r g++ accepts -g... yes checking for int64_t... yes In src/clipper.h, signed 64-bit integers (cInt) will be declared as 'int64_t' checking for uint64_t... yes In src/clipper.h, unsigned 64-bit integers (cUInt) will be declared as 'uint64_t' configure: creating ./config.status config.status: creating src/Makevars ** libs flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -DPOLYCLIP_LONG64="int64_t" -DPOLYCLIP_ULONG64="uint64_t" -I/sw/include -fPIC -g -O3 -c clipper.cpp -o clipper.o flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -DPOLYCLIP_LONG64="int64_t" -DPOLYCLIP_ULONG64="uint64_t" -I/sw/include -fPIC -g -O3 -c interface.cpp -o interface.o flag-sort -r g++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib -o polyclip.dylib clipper.o interface.o -L/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation installing to /sw/build.build/root-cran-polyclip-r31-1.3-0-1/sw/lib/R/3.1/site-library/polyclip/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (polyclip) install_name_tool -id /sw/lib/R/3.1/site-library/polyclip/libs/polyclip.dylib /sw/build.build/root-cran-polyclip-r31-1.3-0-1/sw/lib/R/3.1/site-library/polyclip/libs/polyclip.dylib sudo -u fink-bld [ENV] sh -c /tmp/fink.M1Hwj /bin/rm -f /sw/build.build/root-cran-polyclip-r31-1.3-0-1/sw/info/dir /sw/build.build/root-cran-polyclip-r31-1.3-0-1/sw/info/dir.old /sw/build.build/root-cran-polyclip-r31-1.3-0-1/sw/share/info/dir /sw/build.build/root-cran-polyclip-r31-1.3-0-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-polyclip-r31-1.3-0-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-polyclip-r31' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-polyclip-r31_1.3-0-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-polyclip-r31-1.3-0-1 (Reading database ... 9394 files and directories currently installed.) Removing fink-buildlock-cran-polyclip-r31-1.3-0-1 ...