printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-r.utils-r30 2>&1 The package 'cran-r.utils-r30' will be built without being installed. Reading build dependency for cran-r.utils-r30-1.29.8-1... Reading dependency for cran-r.utils-r30-1.29.8-1... Reading build conflict for cran-r.utils-r30-1.29.8-1... The package 'r-base30-dev' will be installed. Reading dependency for r-base30-dev-3.0.3-8... Reading runtime dependency for r-base30-dev-3.0.3-8... The package 'r-base30' will be installed. Reading dependency for r-base30-3.0.3-8... Reading runtime dependency for r-base30-3.0.3-8... The package 'cran-r.methodss3-r30' will be installed. Reading dependency for cran-r.methodss3-r30-1.6.1-1... Reading runtime dependency for cran-r.methodss3-r30-1.6.1-1... The package 'cran-r.oo-r30' will be installed. Reading dependency for cran-r.oo-r30-1.18.0-1... Reading runtime dependency for cran-r.oo-r30-1.18.0-1... The package 'r-base30-shlibs' will be installed. Reading dependency for r-base30-shlibs-3.0.3-8... Reading runtime dependency for r-base30-shlibs-3.0.3-8... The package 'flag-sort' will be installed. Reading dependency for flag-sort-0.5-1... Reading runtime dependency for flag-sort-0.5-1... The package 'cairo-shlibs' will be installed. Reading dependency for cairo-shlibs-1.12.14-1... Reading runtime dependency for cairo-shlibs-1.12.14-1... The package 'gcc49-shlibs' will be installed. Reading dependency for gcc49-shlibs-4.9.1-1000... Reading runtime dependency for gcc49-shlibs-4.9.1-1000... The package 'glib2-shlibs' will be installed. Reading dependency for glib2-shlibs-2.22.4-8... Reading runtime dependency for glib2-shlibs-2.22.4-8... The package 'libicu48-shlibs' will be installed. Reading dependency for libicu48-shlibs-4.8.1.1-2... Reading runtime dependency for libicu48-shlibs-4.8.1.1-2... The package 'libjpeg9-shlibs' will be installed. Reading dependency for libjpeg9-shlibs-9a-1... Reading runtime dependency for libjpeg9-shlibs-9a-1... The package 'liblzma5-shlibs' will be installed. Reading dependency for liblzma5-shlibs-5.0.5-2... Reading runtime dependency for liblzma5-shlibs-5.0.5-2... The package 'libpng16-shlibs' will be installed. Reading dependency for libpng16-shlibs-1.6.12-1... Reading runtime dependency for libpng16-shlibs-1.6.12-1... The package 'libtiff5-shlibs' will be installed. Reading dependency for libtiff5-shlibs-4.0.3-5... Reading runtime dependency for libtiff5-shlibs-4.0.3-5... The package 'pango1-xft2-ft219-shlibs' will be installed. Reading dependency for pango1-xft2-ft219-shlibs-1.24.5-9... Reading runtime dependency for pango1-xft2-ft219-shlibs-1.24.5-9... The package 'libpcre1-shlibs' will be installed. Reading dependency for libpcre1-shlibs-8.35-1... Reading runtime dependency for libpcre1-shlibs-8.35-1... The package 'readline6-shlibs' will be installed. Reading dependency for readline6-shlibs-6.3.6-1... Reading runtime dependency for readline6-shlibs-6.3.6-1... The package 'tcltk' will be installed. Reading dependency for tcltk-8.6.1-104... Reading runtime dependency for tcltk-8.6.1-104... The package 'fontconfig2-shlibs' will be installed. Reading dependency for fontconfig2-shlibs-2.10.2-1... Reading runtime dependency for fontconfig2-shlibs-2.10.2-1... The package 'freetype219-shlibs' will be installed. Reading dependency for freetype219-shlibs-2.4.12-1... Reading runtime dependency for freetype219-shlibs-2.4.12-1... The package 'pixman-shlibs' will be installed. Reading dependency for pixman-shlibs-0.32.4-1... Reading runtime dependency for pixman-shlibs-0.32.4-1... The package 'xdg-base' will be installed. Reading dependency for xdg-base-0.8-2... Reading runtime dependency for xdg-base-0.8-2... The package 'libjbig-shlibs' will be installed. Reading dependency for libjbig-shlibs-2.0-1... Reading runtime dependency for libjbig-shlibs-2.0-1... The package 'libthai-shlibs' will be installed. Reading dependency for libthai-shlibs-0.1.20-1... Reading runtime dependency for libthai-shlibs-0.1.20-1... The package 'xft2-shlibs' will be installed. Reading dependency for xft2-shlibs-2.2.0-3... Reading runtime dependency for xft2-shlibs-2.2.0-3... The package 'tcltk-shlibs' will be installed. Reading dependency for tcltk-shlibs-8.6.1-104... Reading runtime dependency for tcltk-shlibs-8.6.1-104... The package 'fontconfig-config' will be installed. Reading dependency for fontconfig-config-2.10.2-1... Reading runtime dependency for fontconfig-config-2.10.2-1... The package 'expat1-shlibs' will be installed. Reading dependency for expat1-shlibs-2.1.0-1... Reading runtime dependency for expat1-shlibs-2.1.0-1... The package 'libdatrie1-shlibs' will be installed. Reading dependency for libdatrie1-shlibs-0.2.8-2... Reading runtime dependency for libdatrie1-shlibs-0.2.8-2... The package 'libthai' will be installed. Reading dependency for libthai-0.1.20-1... Reading runtime dependency for libthai-0.1.20-1... The following package will be rebuilt: cran-r.utils-r30 The following 30 additional packages will be installed: cairo-shlibs cran-r.methodss3-r30 cran-r.oo-r30 expat1-shlibs flag-sort fontconfig-config fontconfig2-shlibs freetype219-shlibs gcc49-shlibs glib2-shlibs libdatrie1-shlibs libicu48-shlibs libjbig-shlibs libjpeg9-shlibs liblzma5-shlibs libpcre1-shlibs libpng16-shlibs libthai libthai-shlibs libtiff5-shlibs pango1-xft2-ft219-shlibs pixman-shlibs r-base30 r-base30-dev r-base30-shlibs readline6-shlibs tcltk tcltk-shlibs xdg-base xft2-shlibs Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/R.utils_1.29.8.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 313k 100 313k 0 0 355k 0 --:--:-- --:--:-- --:--:-- 355k Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/expat1-shlibs_2.1.0-1_darwin-x86_64.deb Selecting previously deselected package expat1-shlibs. (Reading database ... 4296 files and directories currently installed.) Unpacking expat1-shlibs (from .../expat1-shlibs_2.1.0-1_darwin-x86_64.deb) ... Setting up expat1-shlibs (2.1.0-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/flag-sort_0.5-1_darwin-x86_64.deb Selecting previously deselected package flag-sort. (Reading database ... 4301 files and directories currently installed.) Unpacking flag-sort (from .../flag-sort_0.5-1_darwin-x86_64.deb) ... Setting up flag-sort (0.5-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/freetype219-shlibs_2.4.12-1_darwin-x86_64.deb Selecting previously deselected package freetype219-shlibs. (Reading database ... 4302 files and directories currently installed.) Unpacking freetype219-shlibs (from .../freetype219-shlibs_2.4.12-1_darwin-x86_64.deb) ... Setting up freetype219-shlibs (2.4.12-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/gcc49-shlibs_4.9.1-1000_darwin-x86_64.deb Selecting previously deselected package gcc49-shlibs. (Reading database ... 4313 files and directories currently installed.) Unpacking gcc49-shlibs (from .../gcc49-shlibs_4.9.1-1000_darwin-x86_64.deb) ... Setting up gcc49-shlibs (4.9.1-1000) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libdatrie1-shlibs_0.2.8-2_darwin-x86_64.deb Selecting previously deselected package libdatrie1-shlibs. (Reading database ... 4358 files and directories currently installed.) Unpacking libdatrie1-shlibs (from .../libdatrie1-shlibs_0.2.8-2_darwin-x86_64.deb) ... Setting up libdatrie1-shlibs (0.2.8-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libicu48-shlibs_4.8.1.1-2_darwin-x86_64.deb Selecting previously deselected package libicu48-shlibs. (Reading database ... 4365 files and directories currently installed.) Unpacking libicu48-shlibs (from .../libicu48-shlibs_4.8.1.1-2_darwin-x86_64.deb) ... Setting up libicu48-shlibs (4.8.1.1-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjbig-shlibs_2.0-1_darwin-x86_64.deb Selecting previously deselected package libjbig-shlibs. (Reading database ... 4379 files and directories currently installed.) Unpacking libjbig-shlibs (from .../libjbig-shlibs_2.0-1_darwin-x86_64.deb) ... Setting up libjbig-shlibs (2.0-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjpeg9-shlibs_9a-1_darwin-x86_64.deb Selecting previously deselected package libjpeg9-shlibs. (Reading database ... 4386 files and directories currently installed.) Unpacking libjpeg9-shlibs (from .../libjpeg9-shlibs_9a-1_darwin-x86_64.deb) ... Setting up libjpeg9-shlibs (9a-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/utils/liblzma5-shlibs_5.0.5-2_darwin-x86_64.deb Selecting previously deselected package liblzma5-shlibs. (Reading database ... 4389 files and directories currently installed.) Unpacking liblzma5-shlibs (from .../liblzma5-shlibs_5.0.5-2_darwin-x86_64.deb) ... Setting up liblzma5-shlibs (5.0.5-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libpcre1-shlibs_8.35-1_darwin-x86_64.deb Selecting previously deselected package libpcre1-shlibs. (Reading database ... 4400 files and directories currently installed.) Unpacking libpcre1-shlibs (from .../libpcre1-shlibs_8.35-1_darwin-x86_64.deb) ... Setting up libpcre1-shlibs (8.35-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libpng16-shlibs_1.6.12-1_darwin-x86_64.deb Selecting previously deselected package libpng16-shlibs. (Reading database ... 4413 files and directories currently installed.) Unpacking libpng16-shlibs (from .../libpng16-shlibs_1.6.12-1_darwin-x86_64.deb) ... Setting up libpng16-shlibs (1.6.12-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libthai-shlibs_0.1.20-1_darwin-x86_64.deb /sw/fink/debs/libthai_0.1.20-1_darwin-x86_64.deb Selecting previously deselected package libthai-shlibs. (Reading database ... 4421 files and directories currently installed.) Unpacking libthai-shlibs (from .../libthai-shlibs_0.1.20-1_darwin-x86_64.deb) ... Selecting previously deselected package libthai. Unpacking libthai (from .../libthai_0.1.20-1_darwin-x86_64.deb) ... Setting up libthai (0.1.20-1) ... Setting up libthai-shlibs (0.1.20-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/libtiff5-shlibs_4.0.3-5_darwin-x86_64.deb Selecting previously deselected package libtiff5-shlibs. (Reading database ... 4436 files and directories currently installed.) Unpacking libtiff5-shlibs (from .../libtiff5-shlibs_4.0.3-5_darwin-x86_64.deb) ... Setting up libtiff5-shlibs (4.0.3-5) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/pixman-shlibs_0.32.4-1_darwin-x86_64.deb Selecting previously deselected package pixman-shlibs. (Reading database ... 4441 files and directories currently installed.) Unpacking pixman-shlibs (from .../pixman-shlibs_0.32.4-1_darwin-x86_64.deb) ... Setting up pixman-shlibs (0.32.4-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/readline6-shlibs_6.3.6-1_darwin-x86_64.deb Selecting previously deselected package readline6-shlibs. (Reading database ... 4445 files and directories currently installed.) Unpacking readline6-shlibs (from .../readline6-shlibs_6.3.6-1_darwin-x86_64.deb) ... Setting up readline6-shlibs (6.3.6-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/xdg-base_0.8-2_darwin-x86_64.deb Selecting previously deselected package xdg-base. (Reading database ... 4456 files and directories currently installed.) Unpacking xdg-base (from .../xdg-base_0.8-2_darwin-x86_64.deb) ... Setting up xdg-base (0.8-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig2-shlibs_2.10.2-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig-config_2.10.2-1_darwin-x86_64.deb Selecting previously deselected package fontconfig2-shlibs. (Reading database ... 4458 files and directories currently installed.) Unpacking fontconfig2-shlibs (from .../fontconfig2-shlibs_2.10.2-1_darwin-x86_64.deb) ... Selecting previously deselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.10.2-1_darwin-x86_64.deb) ... Setting up fontconfig-config (2.10.2-1) ... Setting up fontconfig2-shlibs (2.10.2-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/glib2-shlibs_2.22.4-8_darwin-x86_64.deb Selecting previously deselected package glib2-shlibs. (Reading database ... 4543 files and directories currently installed.) Unpacking glib2-shlibs (from .../glib2-shlibs_2.22.4-8_darwin-x86_64.deb) ... Setting up glib2-shlibs (2.22.4-8) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/xft2-shlibs_2.2.0-3_darwin-x86_64.deb Selecting previously deselected package xft2-shlibs. (Reading database ... 4770 files and directories currently installed.) Unpacking xft2-shlibs (from .../xft2-shlibs_2.2.0-3_darwin-x86_64.deb) ... Setting up xft2-shlibs (2.2.0-3) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/cairo-shlibs_1.12.14-1_darwin-x86_64.deb Selecting previously deselected package cairo-shlibs. (Reading database ... 4779 files and directories currently installed.) Unpacking cairo-shlibs (from .../cairo-shlibs_1.12.14-1_darwin-x86_64.deb) ... Setting up cairo-shlibs (1.12.14-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/gnome/pango1-xft2-ft219-shlibs_1.24.5-9_darwin-x86_64.deb Selecting previously deselected package pango1-xft2-ft219-shlibs. (Reading database ... 4798 files and directories currently installed.) Unpacking pango1-xft2-ft219-shlibs (from .../pango1-xft2-ft219-shlibs_1.24.5-9_darwin-x86_64.deb) ... Setting up pango1-xft2-ft219-shlibs (1.24.5-9) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/tcltk_8.6.1-104_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/tcltk-shlibs_8.6.1-104_darwin-x86_64.deb Selecting previously deselected package tcltk. (Reading database ... 4842 files and directories currently installed.) Unpacking tcltk (from .../tcltk_8.6.1-104_darwin-x86_64.deb) ... Selecting previously deselected package tcltk-shlibs. Unpacking tcltk-shlibs (from .../tcltk-shlibs_8.6.1-104_darwin-x86_64.deb) ... Setting up tcltk-shlibs (8.6.1-104) ... Setting up tcltk (8.6.1-104) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base30_3.0.3-8_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base30-shlibs_3.0.3-8_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base30-dev_3.0.3-8_darwin-x86_64.deb Selecting previously deselected package r-base30. (Reading database ... 5318 files and directories currently installed.) Unpacking r-base30 (from .../r-base30_3.0.3-8_darwin-x86_64.deb) ... Selecting previously deselected package r-base30-shlibs. Unpacking r-base30-shlibs (from .../r-base30-shlibs_3.0.3-8_darwin-x86_64.deb) ... Selecting previously deselected package r-base30-dev. Unpacking r-base30-dev (from .../r-base30-dev_3.0.3-8_darwin-x86_64.deb) ... Setting up r-base30-shlibs (3.0.3-8) ... Setting up r-base30-dev (3.0.3-8) ... Setting up r-base30 (3.0.3-8) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/cran-r.methodss3-r30_1.6.1-1_darwin-x86_64.deb Selecting previously deselected package cran-r.methodss3-r30. (Reading database ... 7298 files and directories currently installed.) Unpacking cran-r.methodss3-r30 (from .../cran-r.methodss3-r30_1.6.1-1_darwin-x86_64.deb) ... Setting up cran-r.methodss3-r30 (1.6.1-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/cran-r.oo-r30_1.18.0-1_darwin-x86_64.deb Selecting previously deselected package cran-r.oo-r30. (Reading database ... 7326 files and directories currently installed.) Unpacking cran-r.oo-r30 (from .../cran-r.oo-r30_1.18.0-1_darwin-x86_64.deb) ... Setting up cran-r.oo-r30 (1.18.0-1) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-r.utils-r30-1.29.8-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-r.utils-r30-1.29.8-1' in `/sw/build.build/fink-buildlock-cran-r.utils-r30-1.29.8-1_2014.07.27-17.38.20_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-r.utils-r30-1.29.8-1_2014.07.27-17.38.20_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-r.utils-r30-1.29.8-1. (Reading database ... 7357 files and directories currently installed.) Unpacking fink-buildlock-cran-r.utils-r30-1.29.8-1 (from .../fink-buildlock-cran-r.utils-r30-1.29.8-1_2014.07.27-17.38.20_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-r.utils-r30-1.29.8-1 (2014.07.27-17.38.20) ... sudo -u fink-bld [ENV] sh -c /tmp/fink._BJa6 env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/R.utils_1.29.8.tar.gz R.utils/ R.utils/inst/ R.utils/inst/data-ex/ R.utils/inst/data-ex/NEWS.LNK R.utils/inst/data-ex/exampleVComments.R R.utils/inst/data-ex/HISTORY.LNK R.utils/inst/data-ex/lnkFileWith10BitsInFlag.lnk R.utils/tests/ R.utils/tests/symlinks.R R.utils/tests/attachLocally.R R.utils/tests/commandArgs.R R.utils/tests/evalWithTimeout.R R.utils/tests/copyRenameFile.R R.utils/tests/cmdArgs.R R.utils/tests/getOption.R R.utils/tests/queryRCmdCheck.R R.utils/tests/toCamelCase.R R.utils/tests/use.R R.utils/tests/createLink.R R.utils/NAMESPACE R.utils/NEWS R.utils/R/ R.utils/R/finalizeSession.R R.utils/R/fileAccess.R R.utils/R/attachLocally.R R.utils/R/seqToIntervals.R R.utils/R/bunzip2.R R.utils/R/Verbose.R R.utils/R/findSourceTraceback.R R.utils/R/hasUrlProtocol.R R.utils/R/isEof.connection.R R.utils/R/commandArgs.R R.utils/R/000.R R.utils/R/GenericSummary.R R.utils/R/isOpen.character.R R.utils/R/reassignInPackage.R R.utils/R/hpaste.R R.utils/R/printf.R R.utils/R/filePath.R R.utils/R/countLines.R R.utils/R/readRdHelp.R R.utils/R/loadToEnv.R R.utils/R/evalWithTimeout.R R.utils/R/renameFile.R R.utils/R/mergeByCommonTails.R R.utils/R/downloadFile.R R.utils/R/saveObject.R R.utils/R/writeDataFrame.R R.utils/R/TextStatusBar.R R.utils/R/resetWarnings.R R.utils/R/intervalsToSeq.R R.utils/R/readTable.R R.utils/R/popTemporaryFile.R R.utils/R/popBackupFile.R R.utils/R/env.R R.utils/R/isFile.R R.utils/R/VComments.R R.utils/R/gstring.R R.utils/R/resample.R R.utils/R/mapToIntervals.R R.utils/R/Java.R R.utils/R/whichVector.R R.utils/R/subplots.R R.utils/R/isPackageInstalled.R R.utils/R/extract.array.R R.utils/R/readBinFragments.R R.utils/R/isZero.R R.utils/R/moveInSearchPath.R R.utils/R/dimNA.R R.utils/R/Options.R R.utils/R/mergeIntervals.R R.utils/R/getAbsolutePath.R R.utils/R/gzip.R R.utils/R/FileListTree.R R.utils/R/installPackages.R R.utils/R/onGarbageCollect.R R.utils/R/cmdArgs.R R.utils/R/wrap.array.R R.utils/R/insert.R R.utils/R/touchFile.R R.utils/R/parseArgs.R R.utils/R/intToHex.R R.utils/R/Settings.R R.utils/R/splitByCommonTails.R R.utils/R/MultiVerbose.R R.utils/R/pushBackupFile.R R.utils/R/lastModified.R R.utils/R/isUrl.R R.utils/R/writeBinFragments.R R.utils/R/getRelativePath.R R.utils/R/Assert.R R.utils/R/FileProgressBar.R R.utils/R/CmdArgsFunction.R R.utils/R/toAsciiRegExprPattern.R R.utils/R/density.EXTS.R R.utils/R/queryRCmdCheck.R R.utils/R/loadObject.R R.utils/R/addFinalizerToLast.R R.utils/R/toCamelCase.R R.utils/R/GString-class.R R.utils/R/getParent.R R.utils/R/inAnyInterval.R R.utils/R/eget.R R.utils/R/removeDirectory.R R.utils/R/copyDirectory.R R.utils/R/ProgressBar.R R.utils/R/seqToHumanReadable.R R.utils/R/readTableIndex.R R.utils/R/copyFile.R R.utils/R/findFiles.R R.utils/R/use.R R.utils/R/NullVerbose.R R.utils/R/callHooks.R R.utils/R/Sys.readlink2.R R.utils/R/onSessionExit.R R.utils/R/intToOct.R R.utils/R/006.fixVarArgs.R R.utils/R/System.R R.utils/R/isAbsolutePath.R R.utils/R/sourceTo.R R.utils/R/setOption.R R.utils/R/readWindowsShellLink.R R.utils/R/tempvar.R R.utils/R/beta/ R.utils/R/beta/Options.ui.Rtodo R.utils/R/beta/singularPlural.Rtrial R.utils/R/pushTemporaryFile.R R.utils/R/gcat.R R.utils/R/colClasses.R R.utils/R/sourceDirectory.R R.utils/R/unwrap.array.R R.utils/R/intToBin.R R.utils/R/getCommonPrefix.R R.utils/R/systemR.R R.utils/R/evalCapture.R R.utils/R/devel/ R.utils/R/devel/fileSizeToHumanReadable.R R.utils/R/devel/splitUrl.R R.utils/R/devel/doCall.R R.utils/R/LComments.R R.utils/R/toUrl.R R.utils/R/isSingle.R R.utils/R/listDirectory.R R.utils/R/Arguments.R R.utils/R/mkdirs.R R.utils/R/TimeoutException.R R.utils/R/stext.R R.utils/R/isPackageLoaded.R R.utils/R/splitByPattern.R R.utils/R/999.NonDocumentedObjects.R R.utils/R/999.package.R R.utils/R/displayCode.R R.utils/R/isReplicated.R R.utils/R/doCall.R R.utils/R/detachPlain.R R.utils/R/SmartComments.R R.utils/R/zzz.R R.utils/R/dataFrame.R R.utils/R/createLink.R R.utils/R/detachPackage.R R.utils/R/capitalize.R R.utils/R/readWindowsShortcut.R R.utils/R/isDirectory.R R.utils/R/patchCode.R R.utils/R/createWindowsShortcut.R R.utils/R/createFileAtomically.R R.utils/R/arrayIndex.R R.utils/MD5 R.utils/DESCRIPTION R.utils/man/ R.utils/man/getThreshold.Verbose.Rd R.utils/man/writeDataFrame.data.frame.Rd R.utils/man/listDirectory.Rd R.utils/man/lastModified.Rd R.utils/man/gstring.Rd R.utils/man/off.Verbose.Rd R.utils/man/newline.TextStatusBar.Rd R.utils/man/getInstanceOf.Arguments.Rd R.utils/man/reset.VComments.Rd R.utils/man/parse.SmartComments.Rd R.utils/man/Verbose.Rd R.utils/man/Java.Rd R.utils/man/attachLocally.list.Rd R.utils/man/MultiVerbose.Rd R.utils/man/getBuiltinUsername.GString.Rd R.utils/man/toUrl.Rd R.utils/man/setLabels.TextStatusBar.Rd R.utils/man/setThreshold.Verbose.Rd R.utils/man/inAnyInterval.numeric.Rd R.utils/man/getUsername.System.Rd R.utils/man/saveAnywhere.Settings.Rd R.utils/man/queryRCmdCheck.Rd R.utils/man/asByte.Java.Rd R.utils/man/whichVector.logical.Rd R.utils/man/isPackageLoaded.Rd R.utils/man/bunzip2.Rd R.utils/man/isFile.Rd R.utils/man/findGraphicsDevice.System.Rd R.utils/man/isEof.connection.Rd R.utils/man/evaluate.Verbose.Rd R.utils/man/ProgressBar.Rd R.utils/man/swapXY.density.Rd R.utils/man/file.info2.Rd R.utils/man/copyDirectory.Rd R.utils/man/loadToEnv.Rd R.utils/man/getLeaves.Options.Rd R.utils/man/stext.Rd R.utils/man/env.Rd R.utils/man/isOn.NullVerbose.Rd R.utils/man/writeShort.Java.Rd R.utils/man/equals.Verbose.Rd R.utils/man/detachPackage.Rd R.utils/man/as.character.binmode.Rd R.utils/man/cmdArgsCall.Rd R.utils/man/displayCode.Rd R.utils/man/isModified.Settings.Rd R.utils/man/capitalize.Rd R.utils/man/onGarbageCollect.Rd R.utils/man/isVisible.Verbose.Rd R.utils/man/getEnvironment.Arguments.Rd R.utils/man/enter.Verbose.Rd R.utils/man/isScalar.Assert.Rd R.utils/man/fileAccess.Rd R.utils/man/getVariableValue.GString.Rd R.utils/man/setLabel.TextStatusBar.Rd R.utils/man/readWindowsShortcut.Rd R.utils/man/tempvar.Rd R.utils/man/arrayIndex.Rd R.utils/man/popMessage.TextStatusBar.Rd R.utils/man/isDone.ProgressBar.Rd R.utils/man/getLoadedPathname.Settings.Rd R.utils/man/readBinFragments.Rd R.utils/man/downloadFile.character.Rd R.utils/man/getIntegers.Arguments.Rd R.utils/man/getReadablePathnames.Arguments.Rd R.utils/man/isAbsolutePath.Rd R.utils/man/summary.Verbose.Rd R.utils/man/readTableIndex.Rd R.utils/man/getLogicals.Arguments.Rd R.utils/man/findGhostscript.System.Rd R.utils/man/currentTimeMillis.System.Rd R.utils/man/reset.SmartComments.Rd R.utils/man/as.logical.Verbose.Rd R.utils/man/isVisible.NullVerbose.Rd R.utils/man/createFileAtomically.Rd R.utils/man/getFilename.Arguments.Rd R.utils/man/getRelativePath.Rd R.utils/man/getBuiltinRversion.GString.Rd R.utils/man/splitByPattern.Rd R.utils/man/convertComment.VComments.Rd R.utils/man/setTimestampFormat.Verbose.Rd R.utils/man/filePath.Rd R.utils/man/str.Options.Rd R.utils/man/writeByte.Java.Rd R.utils/man/intervalsToSeq.matrix.Rd R.utils/man/getBarString.ProgressBar.Rd R.utils/man/isOpen.character.Rd R.utils/man/setStepLength.ProgressBar.Rd R.utils/man/pushBackupFile.Rd R.utils/man/getBuiltinRhome.GString.Rd R.utils/man/setOption.Options.Rd R.utils/man/parseDebian.System.Rd R.utils/man/countLines.Rd R.utils/man/findFiles.Rd R.utils/man/hasOption.Options.Rd R.utils/man/setTicks.ProgressBar.Rd R.utils/man/flush.TextStatusBar.Rd R.utils/man/readShort.Java.Rd R.utils/man/as.character.GString.Rd R.utils/man/colClasses.Rd R.utils/man/getTimestampFormat.Verbose.Rd R.utils/man/isMatrix.Assert.Rd R.utils/man/reset.ProgressBar.Rd R.utils/man/getWritablePathname.Arguments.Rd R.utils/man/copyFile.Rd R.utils/man/findSourceTraceback.Rd R.utils/man/mapToIntervals.numeric.Rd R.utils/man/isVector.Assert.Rd R.utils/man/update.TextStatusBar.Rd R.utils/man/createLink.Rd R.utils/man/reassignInPackage.Rd R.utils/man/asInt.Java.Rd R.utils/man/isDirectory.Rd R.utils/man/draw.density.Rd R.utils/man/setMaxValue.ProgressBar.Rd R.utils/man/cat.Verbose.Rd R.utils/man/gzip.Rd R.utils/man/onSessionExit.Rd R.utils/man/VComments.Rd R.utils/man/validate.VComments.Rd R.utils/man/getRegularExpression.Arguments.Rd R.utils/man/finalizeSession.Rd R.utils/man/timestampOn.Verbose.Rd R.utils/man/pushState.Verbose.Rd R.utils/man/update.ProgressBar.Rd R.utils/man/warnings.Verbose.Rd R.utils/man/increase.ProgressBar.Rd R.utils/man/setDefaultLevel.Verbose.Rd R.utils/man/commandArgs.Rd R.utils/man/callHooks.function.Rd R.utils/man/as.double.Verbose.Rd R.utils/man/compile.SmartComments.Rd R.utils/man/System.Rd R.utils/man/validate.SmartComments.Rd R.utils/man/evalCapture.Rd R.utils/man/readTable.Rd R.utils/man/use.Rd R.utils/man/eget.Rd R.utils/man/more.Verbose.Rd R.utils/man/callHooks.Rd R.utils/man/resample.Rd R.utils/man/evaluate.GString.Rd R.utils/man/ruler.Verbose.Rd R.utils/man/check.Assert.Rd R.utils/man/readWindowsShellLink.Rd R.utils/man/doCall.Rd R.utils/man/promptAndSave.Settings.Rd R.utils/man/convertComment.SmartComments.Rd R.utils/man/moveInSearchPath.Rd R.utils/man/writeRaw.Verbose.Rd R.utils/man/readByte.Java.Rd R.utils/man/resetWarnings.Rd R.utils/man/wrap.array.Rd R.utils/man/TextStatusBar.Rd R.utils/man/getBuiltinPid.GString.Rd R.utils/man/addFinalizerToLast.Rd R.utils/man/setValue.ProgressBar.Rd R.utils/man/getReadablePathname.Arguments.Rd R.utils/man/createWindowsShortcut.Rd R.utils/man/LComments.Rd R.utils/man/isPackageInstalled.Rd R.utils/man/getLabel.TextStatusBar.Rd R.utils/man/str.Verbose.Rd R.utils/man/getNumerics.Arguments.Rd R.utils/man/isSingle.Rd R.utils/man/as.character.ProgressBar.Rd R.utils/man/insert.Rd R.utils/man/writeRaw.NullVerbose.Rd R.utils/man/mergeIntervals.numeric.Rd R.utils/man/print.Verbose.Rd R.utils/man/readUTF.Java.Rd R.utils/man/Arguments.Rd R.utils/man/getVector.Arguments.Rd R.utils/man/header.Verbose.Rd R.utils/man/isOn.Verbose.Rd R.utils/man/GString-class.Rd R.utils/man/getRaw.GString.Rd R.utils/man/as.list.MultiVerbose.Rd R.utils/man/asLong.Java.Rd R.utils/man/less.Verbose.Rd R.utils/man/pushTemporaryFile.Rd R.utils/man/Settings.Rd R.utils/man/isUrl.Rd R.utils/man/Assert.Rd R.utils/man/writeInt.Java.Rd R.utils/man/unwrap.array.Rd R.utils/man/intToBin.Rd R.utils/man/saveObject.Rd R.utils/man/getVerbose.Arguments.Rd R.utils/man/print.GString.Rd R.utils/man/nbrOfOptions.Options.Rd R.utils/man/names.Options.Rd R.utils/man/getHostname.System.Rd R.utils/man/popBackupFile.Rd R.utils/man/Options.Rd R.utils/man/hasUrlProtocol.Rd R.utils/man/timestamp.Verbose.Rd R.utils/man/evalWithTimeout.Rd R.utils/man/parse.GString.Rd R.utils/man/getCharacters.Arguments.Rd R.utils/man/as.list.Options.Rd R.utils/man/writeBinFragments.Rd R.utils/man/openBrowser.System.Rd R.utils/man/dataFrame.Rd R.utils/man/extract.array.Rd R.utils/man/subplots.Rd R.utils/man/cleanup.FileProgressBar.Rd R.utils/man/asShort.Java.Rd R.utils/man/touchFile.Rd R.utils/man/NullVerbose.Rd R.utils/man/popTemporaryFile.Rd R.utils/man/patchCode.Rd R.utils/man/loadObject.Rd R.utils/man/getBuiltinOs.GString.Rd R.utils/man/installPackages.Rd R.utils/man/as.character.Verbose.Rd R.utils/man/removeDirectory.Rd R.utils/man/seqToIntervals.Rd R.utils/man/updateLabels.TextStatusBar.Rd R.utils/man/TimeoutException.Rd R.utils/man/gcat.Rd R.utils/man/isZero.Rd R.utils/man/R.utils-package.Rd R.utils/man/Sys.readlink2.Rd R.utils/man/readInt.Java.Rd R.utils/man/update.FileProgressBar.Rd R.utils/man/sourceTo.Rd R.utils/man/seqToHumanReadable.Rd R.utils/man/readRdHelp.Rd R.utils/man/newline.Verbose.Rd R.utils/man/setOption.Rd R.utils/man/cmdArgs.Rd R.utils/man/as.character.Options.Rd R.utils/man/hpaste.Rd R.utils/man/getMessage.TimeoutException.Rd R.utils/man/getOption.Options.Rd R.utils/man/sourceDirectory.Rd R.utils/man/loadAnywhere.Settings.Rd R.utils/man/getBuiltinDate.GString.Rd R.utils/man/isReplicated.Rd R.utils/man/mkdirs.Rd R.utils/man/renameFile.Rd R.utils/man/findSettings.Settings.Rd R.utils/man/setProgress.ProgressBar.Rd R.utils/man/writeRaw.MultiVerbose.Rd R.utils/man/systemR.Rd R.utils/man/dimNALT_-.Rd R.utils/man/printf.Verbose.Rd R.utils/man/toCamelCase.Rd R.utils/man/getBuiltinDatetime.GString.Rd R.utils/man/writeUTF.Java.Rd R.utils/man/FileProgressBar.Rd R.utils/man/equals.Options.Rd R.utils/man/printf.Rd R.utils/man/SmartComments.Rd R.utils/man/inherits.Assert.Rd R.utils/man/exit.Verbose.Rd R.utils/man/capture.Verbose.Rd R.utils/man/getParent.Rd R.utils/man/getDoubles.Arguments.Rd R.utils/man/on.Verbose.Rd R.utils/man/getIndices.Arguments.Rd R.utils/man/getAbsolutePath.Rd R.utils/man/Non-documented_objects.Rd R.utils/man/getBuiltinTime.GString.Rd R.utils/man/getBuiltinHostname.GString.Rd R.utils/.Rinstignore sudo -u fink-bld [ENV] sh -c /tmp/fink.8k8Lo /tmp/fink.LofNd #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-r.utils-r30-1.29.8-1/R.utils/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R pushd .. /sw/build.build/cran-r.utils-r30-1.29.8-1 /sw/build.build/cran-r.utils-r30-1.29.8-1/R.utils if [[ 3.0 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes R.utils else $BIN_R --verbose CMD build --no-vignettes R.utils fi * checking for file 'R.utils/DESCRIPTION' ... OK * preparing 'R.utils': * checking DESCRIPTION meta-information ... OK * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building 'R.utils_1.29.8.tar.gz' /bin/rm -rf /sw/build.build/root-cran-r.utils-r30-1.29.8-1 /bin/mkdir -p /sw/build.build/root-cran-r.utils-r30-1.29.8-1/sw /bin/mkdir -p /sw/build.build/root-cran-r.utils-r30-1.29.8-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-r.utils-r30-1.29.8-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.6_5oy /tmp/fink.P7aGB #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R mkdir -p /sw/build.build/root-cran-r.utils-r30-1.29.8-1/sw/lib/R/3.0/site-library pushd /sw/build.build/cran-r.utils-r30-1.29.8-1/R.utils/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-r.utils-r30-1.29.8-1/sw/lib/R/3.0/site-library R.utils /sw/build.build/cran-r.utils-r30-1.29.8-1 /sw/build.build/cran-r.utils-r30-1.29.8-1/R.utils * installing *source* package 'R.utils' ... ** package 'R.utils' successfully unpacked and MD5 sums checked ** R ** inst ** preparing package for lazy loading Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : Renamed the preexisting function warnings to warnings.default, which was defined in environment base. ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (R.utils) sudo -u fink-bld [ENV] sh -c /tmp/fink.8uSaV /bin/rm -f /sw/build.build/root-cran-r.utils-r30-1.29.8-1/sw/info/dir /sw/build.build/root-cran-r.utils-r30-1.29.8-1/sw/info/dir.old /sw/build.build/root-cran-r.utils-r30-1.29.8-1/sw/share/info/dir /sw/build.build/root-cran-r.utils-r30-1.29.8-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-r.utils-r30-1.29.8-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-r.utils-r30' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-r.utils-r30_1.29.8-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-r.utils-r30-1.29.8-1 (Reading database ... 7358 files and directories currently installed.) Removing fink-buildlock-cran-r.utils-r30-1.29.8-1 ...