printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-rcompression-r31 2>&1 The package 'cran-rcompression-r31' will be built without being installed. Reading build dependency for cran-rcompression-r31-0.93-2-1... Reading dependency for cran-rcompression-r31-0.93-2-1... Reading build conflict for cran-rcompression-r31-0.93-2-1... The package 'r-base31-dev' will be installed. Reading dependency for r-base31-dev-3.1.1-2... Reading runtime dependency for r-base31-dev-3.1.1-2... The package 'bzip2-dev' will be installed. Reading dependency for bzip2-dev-1.0.6-1... Reading runtime dependency for bzip2-dev-1.0.6-1... The package 'libgettext8-dev' will be installed. Reading dependency for libgettext8-dev-0.18.3.1-2... Reading runtime dependency for libgettext8-dev-0.18.3.1-2... The package 'r-base31' will be installed. Reading dependency for r-base31-3.1.1-2... Reading runtime dependency for r-base31-3.1.1-2... The package 'r-base31-shlibs' will be installed. Reading dependency for r-base31-shlibs-3.1.1-2... Reading runtime dependency for r-base31-shlibs-3.1.1-2... The package 'gettext-bin' will be installed. Reading dependency for gettext-bin-0.18.3.1-2... Reading runtime dependency for gettext-bin-0.18.3.1-2... The package 'flag-sort' will be installed. Reading dependency for flag-sort-0.5-1... Reading runtime dependency for flag-sort-0.5-1... The package 'cairo-shlibs' will be installed. Reading dependency for cairo-shlibs-1.12.14-1... Reading runtime dependency for cairo-shlibs-1.12.14-1... The package 'gcc49-shlibs' will be installed. Reading dependency for gcc49-shlibs-4.9.1-1000... Reading runtime dependency for gcc49-shlibs-4.9.1-1000... The package 'glib2-shlibs' will be installed. Reading dependency for glib2-shlibs-2.22.4-8... Reading runtime dependency for glib2-shlibs-2.22.4-8... The package 'libicu48-shlibs' will be installed. Reading dependency for libicu48-shlibs-4.8.1.1-2... Reading runtime dependency for libicu48-shlibs-4.8.1.1-2... The package 'libjpeg9-shlibs' will be installed. Reading dependency for libjpeg9-shlibs-9a-1... Reading runtime dependency for libjpeg9-shlibs-9a-1... The package 'liblzma5-shlibs' will be installed. Reading dependency for liblzma5-shlibs-5.0.5-2... Reading runtime dependency for liblzma5-shlibs-5.0.5-2... The package 'libpng16-shlibs' will be installed. Reading dependency for libpng16-shlibs-1.6.12-1... Reading runtime dependency for libpng16-shlibs-1.6.12-1... The package 'libtiff5-shlibs' will be installed. Reading dependency for libtiff5-shlibs-4.0.3-5... Reading runtime dependency for libtiff5-shlibs-4.0.3-5... The package 'pango1-xft2-ft219-shlibs' will be installed. Reading dependency for pango1-xft2-ft219-shlibs-1.24.5-9... Reading runtime dependency for pango1-xft2-ft219-shlibs-1.24.5-9... The package 'libpcre1-shlibs' will be installed. Reading dependency for libpcre1-shlibs-8.35-1... Reading runtime dependency for libpcre1-shlibs-8.35-1... The package 'readline6-shlibs' will be installed. Reading dependency for readline6-shlibs-6.3.6-1... Reading runtime dependency for readline6-shlibs-6.3.6-1... The package 'tcltk' will be installed. Reading dependency for tcltk-8.6.1-104... Reading runtime dependency for tcltk-8.6.1-104... The package 'fontconfig2-shlibs' will be installed. Reading dependency for fontconfig2-shlibs-2.10.2-1... Reading runtime dependency for fontconfig2-shlibs-2.10.2-1... The package 'freetype219-shlibs' will be installed. Reading dependency for freetype219-shlibs-2.4.12-1... Reading runtime dependency for freetype219-shlibs-2.4.12-1... The package 'pixman-shlibs' will be installed. Reading dependency for pixman-shlibs-0.32.4-1... Reading runtime dependency for pixman-shlibs-0.32.4-1... The package 'xdg-base' will be installed. Reading dependency for xdg-base-0.8-2... Reading runtime dependency for xdg-base-0.8-2... The package 'libjbig-shlibs' will be installed. Reading dependency for libjbig-shlibs-2.0-1... Reading runtime dependency for libjbig-shlibs-2.0-1... The package 'libthai-shlibs' will be installed. Reading dependency for libthai-shlibs-0.1.20-1... Reading runtime dependency for libthai-shlibs-0.1.20-1... The package 'xft2-shlibs' will be installed. Reading dependency for xft2-shlibs-2.2.0-3... Reading runtime dependency for xft2-shlibs-2.2.0-3... The package 'tcltk-shlibs' will be installed. Reading dependency for tcltk-shlibs-8.6.1-104... Reading runtime dependency for tcltk-shlibs-8.6.1-104... The package 'fontconfig-config' will be installed. Reading dependency for fontconfig-config-2.10.2-1... Reading runtime dependency for fontconfig-config-2.10.2-1... The package 'expat1-shlibs' will be installed. Reading dependency for expat1-shlibs-2.1.0-1... Reading runtime dependency for expat1-shlibs-2.1.0-1... The package 'libdatrie1-shlibs' will be installed. Reading dependency for libdatrie1-shlibs-0.2.8-2... Reading runtime dependency for libdatrie1-shlibs-0.2.8-2... The package 'libthai' will be installed. Reading dependency for libthai-0.1.20-1... Reading runtime dependency for libthai-0.1.20-1... The following package will be rebuilt: cran-rcompression-r31 The following 31 additional packages will be installed: bzip2-dev cairo-shlibs expat1-shlibs flag-sort fontconfig-config fontconfig2-shlibs freetype219-shlibs gcc49-shlibs gettext-bin glib2-shlibs libdatrie1-shlibs libgettext8-dev libicu48-shlibs libjbig-shlibs libjpeg9-shlibs liblzma5-shlibs libpcre1-shlibs libpng16-shlibs libthai libthai-shlibs libtiff5-shlibs pango1-xft2-ft219-shlibs pixman-shlibs r-base31 r-base31-dev r-base31-shlibs readline6-shlibs tcltk tcltk-shlibs xdg-base xft2-shlibs Do you want to continue? [Y/n] (assuming default) Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/bzip2-dev_1.0.6-1_darwin-x86_64.deb Selecting previously deselected package bzip2-dev. (Reading database ... 4296 files and directories currently installed.) Unpacking bzip2-dev (from .../bzip2-dev_1.0.6-1_darwin-x86_64.deb) ... Setting up bzip2-dev (1.0.6-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/expat1-shlibs_2.1.0-1_darwin-x86_64.deb Selecting previously deselected package expat1-shlibs. (Reading database ... 4303 files and directories currently installed.) Unpacking expat1-shlibs (from .../expat1-shlibs_2.1.0-1_darwin-x86_64.deb) ... Setting up expat1-shlibs (2.1.0-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/flag-sort_0.5-1_darwin-x86_64.deb Selecting previously deselected package flag-sort. (Reading database ... 4308 files and directories currently installed.) Unpacking flag-sort (from .../flag-sort_0.5-1_darwin-x86_64.deb) ... Setting up flag-sort (0.5-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/freetype219-shlibs_2.4.12-1_darwin-x86_64.deb Selecting previously deselected package freetype219-shlibs. (Reading database ... 4309 files and directories currently installed.) Unpacking freetype219-shlibs (from .../freetype219-shlibs_2.4.12-1_darwin-x86_64.deb) ... Setting up freetype219-shlibs (2.4.12-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/gcc49-shlibs_4.9.1-1000_darwin-x86_64.deb Selecting previously deselected package gcc49-shlibs. (Reading database ... 4320 files and directories currently installed.) Unpacking gcc49-shlibs (from .../gcc49-shlibs_4.9.1-1000_darwin-x86_64.deb) ... Setting up gcc49-shlibs (4.9.1-1000) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libdatrie1-shlibs_0.2.8-2_darwin-x86_64.deb Selecting previously deselected package libdatrie1-shlibs. (Reading database ... 4365 files and directories currently installed.) Unpacking libdatrie1-shlibs (from .../libdatrie1-shlibs_0.2.8-2_darwin-x86_64.deb) ... Setting up libdatrie1-shlibs (0.2.8-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/libgettext8-dev_0.18.3.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/base/gettext-bin_0.18.3.1-2_darwin-x86_64.deb Selecting previously deselected package libgettext8-dev. (Reading database ... 4372 files and directories currently installed.) Unpacking libgettext8-dev (from .../libgettext8-dev_0.18.3.1-2_darwin-x86_64.deb) ... Selecting previously deselected package gettext-bin. Unpacking gettext-bin (from .../gettext-bin_0.18.3.1-2_darwin-x86_64.deb) ... Setting up gettext-bin (0.18.3.1-2) ... Setting up libgettext8-dev (0.18.3.1-2) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libicu48-shlibs_4.8.1.1-2_darwin-x86_64.deb Selecting previously deselected package libicu48-shlibs. (Reading database ... 4466 files and directories currently installed.) Unpacking libicu48-shlibs (from .../libicu48-shlibs_4.8.1.1-2_darwin-x86_64.deb) ... Setting up libicu48-shlibs (4.8.1.1-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjbig-shlibs_2.0-1_darwin-x86_64.deb Selecting previously deselected package libjbig-shlibs. (Reading database ... 4480 files and directories currently installed.) Unpacking libjbig-shlibs (from .../libjbig-shlibs_2.0-1_darwin-x86_64.deb) ... Setting up libjbig-shlibs (2.0-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjpeg9-shlibs_9a-1_darwin-x86_64.deb Selecting previously deselected package libjpeg9-shlibs. (Reading database ... 4487 files and directories currently installed.) Unpacking libjpeg9-shlibs (from .../libjpeg9-shlibs_9a-1_darwin-x86_64.deb) ... Setting up libjpeg9-shlibs (9a-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/utils/liblzma5-shlibs_5.0.5-2_darwin-x86_64.deb Selecting previously deselected package liblzma5-shlibs. (Reading database ... 4490 files and directories currently installed.) Unpacking liblzma5-shlibs (from .../liblzma5-shlibs_5.0.5-2_darwin-x86_64.deb) ... Setting up liblzma5-shlibs (5.0.5-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libpcre1-shlibs_8.35-1_darwin-x86_64.deb Selecting previously deselected package libpcre1-shlibs. (Reading database ... 4501 files and directories currently installed.) Unpacking libpcre1-shlibs (from .../libpcre1-shlibs_8.35-1_darwin-x86_64.deb) ... Setting up libpcre1-shlibs (8.35-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libpng16-shlibs_1.6.12-1_darwin-x86_64.deb Selecting previously deselected package libpng16-shlibs. (Reading database ... 4514 files and directories currently installed.) Unpacking libpng16-shlibs (from .../libpng16-shlibs_1.6.12-1_darwin-x86_64.deb) ... Setting up libpng16-shlibs (1.6.12-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libthai-shlibs_0.1.20-1_darwin-x86_64.deb /sw/fink/debs/libthai_0.1.20-1_darwin-x86_64.deb Selecting previously deselected package libthai-shlibs. (Reading database ... 4522 files and directories currently installed.) Unpacking libthai-shlibs (from .../libthai-shlibs_0.1.20-1_darwin-x86_64.deb) ... Selecting previously deselected package libthai. Unpacking libthai (from .../libthai_0.1.20-1_darwin-x86_64.deb) ... Setting up libthai (0.1.20-1) ... Setting up libthai-shlibs (0.1.20-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/libtiff5-shlibs_4.0.3-5_darwin-x86_64.deb Selecting previously deselected package libtiff5-shlibs. (Reading database ... 4537 files and directories currently installed.) Unpacking libtiff5-shlibs (from .../libtiff5-shlibs_4.0.3-5_darwin-x86_64.deb) ... Setting up libtiff5-shlibs (4.0.3-5) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/pixman-shlibs_0.32.4-1_darwin-x86_64.deb Selecting previously deselected package pixman-shlibs. (Reading database ... 4542 files and directories currently installed.) Unpacking pixman-shlibs (from .../pixman-shlibs_0.32.4-1_darwin-x86_64.deb) ... Setting up pixman-shlibs (0.32.4-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/readline6-shlibs_6.3.6-1_darwin-x86_64.deb Selecting previously deselected package readline6-shlibs. (Reading database ... 4546 files and directories currently installed.) Unpacking readline6-shlibs (from .../readline6-shlibs_6.3.6-1_darwin-x86_64.deb) ... Setting up readline6-shlibs (6.3.6-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/xdg-base_0.8-2_darwin-x86_64.deb Selecting previously deselected package xdg-base. (Reading database ... 4557 files and directories currently installed.) Unpacking xdg-base (from .../xdg-base_0.8-2_darwin-x86_64.deb) ... Setting up xdg-base (0.8-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig2-shlibs_2.10.2-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig-config_2.10.2-1_darwin-x86_64.deb Selecting previously deselected package fontconfig2-shlibs. (Reading database ... 4559 files and directories currently installed.) Unpacking fontconfig2-shlibs (from .../fontconfig2-shlibs_2.10.2-1_darwin-x86_64.deb) ... Selecting previously deselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.10.2-1_darwin-x86_64.deb) ... Setting up fontconfig-config (2.10.2-1) ... Setting up fontconfig2-shlibs (2.10.2-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/glib2-shlibs_2.22.4-8_darwin-x86_64.deb Selecting previously deselected package glib2-shlibs. (Reading database ... 4644 files and directories currently installed.) Unpacking glib2-shlibs (from .../glib2-shlibs_2.22.4-8_darwin-x86_64.deb) ... Setting up glib2-shlibs (2.22.4-8) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/xft2-shlibs_2.2.0-3_darwin-x86_64.deb Selecting previously deselected package xft2-shlibs. (Reading database ... 4863 files and directories currently installed.) Unpacking xft2-shlibs (from .../xft2-shlibs_2.2.0-3_darwin-x86_64.deb) ... Setting up xft2-shlibs (2.2.0-3) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/cairo-shlibs_1.12.14-1_darwin-x86_64.deb Selecting previously deselected package cairo-shlibs. (Reading database ... 4872 files and directories currently installed.) Unpacking cairo-shlibs (from .../cairo-shlibs_1.12.14-1_darwin-x86_64.deb) ... Setting up cairo-shlibs (1.12.14-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/gnome/pango1-xft2-ft219-shlibs_1.24.5-9_darwin-x86_64.deb Selecting previously deselected package pango1-xft2-ft219-shlibs. (Reading database ... 4891 files and directories currently installed.) Unpacking pango1-xft2-ft219-shlibs (from .../pango1-xft2-ft219-shlibs_1.24.5-9_darwin-x86_64.deb) ... Setting up pango1-xft2-ft219-shlibs (1.24.5-9) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/tcltk_8.6.1-104_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/tcltk-shlibs_8.6.1-104_darwin-x86_64.deb Selecting previously deselected package tcltk. (Reading database ... 4935 files and directories currently installed.) Unpacking tcltk (from .../tcltk_8.6.1-104_darwin-x86_64.deb) ... Selecting previously deselected package tcltk-shlibs. Unpacking tcltk-shlibs (from .../tcltk-shlibs_8.6.1-104_darwin-x86_64.deb) ... Setting up tcltk-shlibs (8.6.1-104) ... Setting up tcltk (8.6.1-104) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base31_3.1.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base31-shlibs_3.1.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base31-dev_3.1.1-2_darwin-x86_64.deb Selecting previously deselected package r-base31. (Reading database ... 5411 files and directories currently installed.) Unpacking r-base31 (from .../r-base31_3.1.1-2_darwin-x86_64.deb) ... Selecting previously deselected package r-base31-shlibs. Unpacking r-base31-shlibs (from .../r-base31-shlibs_3.1.1-2_darwin-x86_64.deb) ... Selecting previously deselected package r-base31-dev. Unpacking r-base31-dev (from .../r-base31-dev_3.1.1-2_darwin-x86_64.deb) ... Setting up r-base31-shlibs (3.1.1-2) ... Setting up r-base31-dev (3.1.1-2) ... Setting up r-base31 (3.1.1-2) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-rcompression-r31-0.93-2-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-rcompression-r31-0.93-2-1' in `/sw/build.build/fink-buildlock-cran-rcompression-r31-0.93-2-1_2014.08.02-00.23.32_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-rcompression-r31-0.93-2-1_2014.08.02-00.23.32_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-rcompression-r31-0.93-2-1. (Reading database ... 7378 files and directories currently installed.) Unpacking fink-buildlock-cran-rcompression-r31-0.93-2-1 (from .../fink-buildlock-cran-rcompression-r31-0.93-2-1_2014.08.02-00.23.32_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-rcompression-r31-0.93-2-1 (2014.08.02-00.23.32) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.Kup_x env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/Rcompression_0.93-2.tar.gz Rcompression/ Rcompression/bob.zip Rcompression/Changes.html Rcompression/configure Rcompression/configure.in Rcompression/configure.win Rcompression/COPYRIGHTs Rcompression/DESCRIPTION Rcompression/FAQ.html Rcompression/GNUmakefile Rcompression/inst/ Rcompression/inst/sampleData/ Rcompression/inst/sampleData/Empty.docx Rcompression/inst/sampleData/MyZip.zip Rcompression/inst/sampleData/NAMESPACE.bz2 Rcompression/inst/sampleData/NAMESPACE.gz Rcompression/inst/sampleData/OmegahatXSL_0.2-0.tar.bz2 Rcompression/inst/sampleData/OmegahatXSL_0.2-0.tar.gz Rcompression/inst/sampleData/Test.tar.gz Rcompression/inst/sampleData/tests.zip Rcompression/inst/sampleData/XML.docx Rcompression/libVersion.c Rcompression/LICENSE Rcompression/man/ Rcompression/man/collectContents.Rd Rcompression/man/compress.Rd Rcompression/man/getZipInfo.Rd Rcompression/man/gzip.Rd Rcompression/man/loadZip.Rd Rcompression/man/Rcompression-internal.Rd Rcompression/man/Rdz.Rd Rcompression/man/rmZipEntries.Rd Rcompression/man/runTime.Rd Rcompression/man/tarExtract.Rd Rcompression/man/tarInfo.Rd Rcompression/man/tarListCallback.Rd Rcompression/man/tm_unz-class.Rd Rcompression/man/uncompress.Rd Rcompression/man/unz_file_info-class.Rd Rcompression/man/updateArchive.Rd Rcompression/man/zave.Rd Rcompression/man/zip.Rd Rcompression/man/zipArchive.Rd Rcompression/man/ZipFileArchive-class.Rd Rcompression/NAMESPACE Rcompression/R/ Rcompression/R/archive.R Rcompression/R/bunzip2.R Rcompression/R/compress.R Rcompression/R/removeZipEntry.R Rcompression/R/Rtar.R Rcompression/R/runTime.R Rcompression/R/Runzip.R Rcompression/R/unzip.R Rcompression/R/zave.R Rcompression/R/zip.R Rcompression/R/zipComment.R Rcompression/README Rcompression/README.windows Rcompression/src/ Rcompression/src/bzip2.c Rcompression/src/crypt.h Rcompression/src/ioapi.c Rcompression/src/ioapi.h Rcompression/src/iowin32.h Rcompression/src/Makefile.tu Rcompression/src/Makevars Rcompression/src/Makevars.in Rcompression/src/Makevars.win Rcompression/src/miniunz.c Rcompression/src/miniunz.c.tu Rcompression/src/miniunzip.h Rcompression/src/minizip.c Rcompression/src/minizip.h Rcompression/src/RConverters.c Rcompression/src/RConverters.h Rcompression/src/Rtar.h Rcompression/src/Runtgz.c Rcompression/src/Runzip.c Rcompression/src/Runzip_man.c Rcompression/src/Rzip.c Rcompression/src/untgz.c Rcompression/src/untgz.c.tu Rcompression/src/untgz.h Rcompression/src/unzip.c Rcompression/src/unzip.c.t00.tu Rcompression/src/unzip.c.tu Rcompression/src/unzipMemory.c Rcompression/src/zip.c Rcompression/src/zip.h Rcompression/src/zlib.c Rcompression/tests/ Rcompression/tests/bzTar.R Rcompression/tests/comments.R Rcompression/tests/files.R Rcompression/tests/readZip.R Rcompression/tests/remove.R Rcompression/tests/replace.R Rcompression/tests/tar.R Rcompression/tests/uncompress.R Rcompression/tests/unzipMemory.R Rcompression/tests/zip.R Rcompression/Todo.html Rcompression/Todo.xml Rcompression/tuNotes.xml Rcompression/zip.xml sudo -u fink-bld [ENV] sh -c /tmp/fink.xvrjZ /tmp/fink.u9HR3 #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-rcompression-r31-0.93-2-1/Rcompression/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R pushd .. /sw/build.build/cran-rcompression-r31-0.93-2-1 /sw/build.build/cran-rcompression-r31-0.93-2-1/Rcompression if [[ 3.1 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes Rcompression else $BIN_R --verbose CMD build --no-vignettes Rcompression fi * checking for file 'Rcompression/DESCRIPTION' ... OK * preparing 'Rcompression': * checking DESCRIPTION meta-information ... OK * cleaning src * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building 'Rcompression_0.93-2.tar.gz' /bin/rm -rf /sw/build.build/root-cran-rcompression-r31-0.93-2-1 /bin/mkdir -p /sw/build.build/root-cran-rcompression-r31-0.93-2-1/sw /bin/mkdir -p /sw/build.build/root-cran-rcompression-r31-0.93-2-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-rcompression-r31-0.93-2-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.RcuQk /tmp/fink.ZCAoE #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R mkdir -p /sw/build.build/root-cran-rcompression-r31-0.93-2-1/sw/lib/R/3.1/site-library pushd /sw/build.build/cran-rcompression-r31-0.93-2-1/Rcompression/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-rcompression-r31-0.93-2-1/sw/lib/R/3.1/site-library Rcompression /sw/build.build/cran-rcompression-r31-0.93-2-1 /sw/build.build/cran-rcompression-r31-0.93-2-1/Rcompression * installing *source* package 'Rcompression' ... Checking configuration for Rcompression to find libz and libbz2 checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking how to run the C preprocessor... gcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for zlibVersion in -lz... yes checking bzlib.h usability... yes checking bzlib.h presence... yes checking for bzlib.h... yes checking for BZ2_bzlibVersion in -lbz2... yes Version information for libz and bzlib libz 1.2.5 bzlib 1.0.6, 6-Sept-2010 configure: creating ./config.status config.status: creating src/Makevars ** libs flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/tmp/fink-build-HOME.eJjuLB7wBz/zlib-1.2.3 -I/tmp/fink-build-HOME.eJjuLB7wBz/bzip2-1.0.3 -Dunix -I/sw/include -fPIC -g -O3 -c RConverters.c -o RConverters.o RConverters.c:155:2: warning: implicit declaration of function 'free' is invalid in C99 [-Wimplicit-function-declaration] free(ptr); ^ RConverters.c:221:28: warning: implicitly declaring library function 'malloc' with type 'void *(unsigned long)' ans = (RPointerList *) malloc(sizeof(RPointerList)); ^ RConverters.c:221:28: note: please include the header or explicitly provide a declaration for 'malloc' 2 warnings generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/tmp/fink-build-HOME.eJjuLB7wBz/zlib-1.2.3 -I/tmp/fink-build-HOME.eJjuLB7wBz/bzip2-1.0.3 -Dunix -I/sw/include -fPIC -g -O3 -c Runtgz.c -o Runtgz.o Runtgz.c:239:9: warning: assigning to 'const char **' from 'char **' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers] argv = (char **) S_alloc(numFiles + 1, sizeof(char *)); ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Runtgz.c:246:47: warning: passing 'const char **' to parameter of type 'char **' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers] tar(f, TGZ_EXTRACT, numFiles + 1, argc, argv, (TarCallbackFun) callback, (void *) data); ^~~~ ./untgz.h:146:59: note: passing argument to parameter here int tar OF((gzFile, int, int, int, char **, TarCallbackFun cb, void *data)); ^ /usr/include/zconf.h:240:23: note: expanded from macro 'OF' # define OF(args) args ^ Runtgz.c:257:54: warning: passing 'const char **' to parameter of type 'char **' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers] funTar(&src, TGZ_EXTRACT, numFiles + 1, argc, argv, (TarCallbackFun) callback, (void *) data); ^~~~ ./Rtar.h:13:13: note: passing argument to parameter 'argv' here char **argv, TarCallbackFun cb, void *data); ^ 3 warnings generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/tmp/fink-build-HOME.eJjuLB7wBz/zlib-1.2.3 -I/tmp/fink-build-HOME.eJjuLB7wBz/bzip2-1.0.3 -Dunix -I/sw/include -fPIC -g -O3 -c Runzip.c -o Runzip.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/tmp/fink-build-HOME.eJjuLB7wBz/zlib-1.2.3 -I/tmp/fink-build-HOME.eJjuLB7wBz/bzip2-1.0.3 -Dunix -I/sw/include -fPIC -g -O3 -c Runzip_man.c -o Runzip_man.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/tmp/fink-build-HOME.eJjuLB7wBz/zlib-1.2.3 -I/tmp/fink-build-HOME.eJjuLB7wBz/bzip2-1.0.3 -Dunix -I/sw/include -fPIC -g -O3 -c Rzip.c -o Rzip.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/tmp/fink-build-HOME.eJjuLB7wBz/zlib-1.2.3 -I/tmp/fink-build-HOME.eJjuLB7wBz/bzip2-1.0.3 -Dunix -I/sw/include -fPIC -g -O3 -c bzip2.c -o bzip2.o bzip2.c:36:17: warning: assigning to 'char *' from 'Rbyte *' (aka 'unsigned char *') converts between pointers to integer types with different sign [-Wpointer-sign] stream.next_in = RAW(r_source); ^ ~~~~~~~~~~~~~ bzip2.c:38:18: warning: assigning to 'char *' from 'unsigned char *' converts between pointers to integer types with different sign [-Wpointer-sign] stream.next_out = (unsigned char *) ans; ^ ~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/tmp/fink-build-HOME.eJjuLB7wBz/zlib-1.2.3 -I/tmp/fink-build-HOME.eJjuLB7wBz/bzip2-1.0.3 -Dunix -I/sw/include -fPIC -g -O3 -c ioapi.c -o ioapi.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/tmp/fink-build-HOME.eJjuLB7wBz/zlib-1.2.3 -I/tmp/fink-build-HOME.eJjuLB7wBz/bzip2-1.0.3 -Dunix -I/sw/include -fPIC -g -O3 -c miniunz.c -o miniunz.o miniunz.c:346:17: warning: implicit declaration of function 'makedir' is invalid in C99 [-Wimplicit-function-declaration] makedir(write_filename); ^ 1 warning generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/tmp/fink-build-HOME.eJjuLB7wBz/zlib-1.2.3 -I/tmp/fink-build-HOME.eJjuLB7wBz/bzip2-1.0.3 -Dunix -I/sw/include -fPIC -g -O3 -c minizip.c -o minizip.o minizip.c:515:30: warning: passing 'const char *' to parameter of type 'char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] filetime(filenameinzip, &zi.tmz_date,&zi.dosDate); ^~~~~~~~~~~~~ 1 warning generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/tmp/fink-build-HOME.eJjuLB7wBz/zlib-1.2.3 -I/tmp/fink-build-HOME.eJjuLB7wBz/bzip2-1.0.3 -Dunix -I/sw/include -fPIC -g -O3 -c untgz.c -o untgz.o In file included from untgz.c:308: In file included from /sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include/R_ext/RS.h:37: /sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include/R_ext/Error.h:51:9: warning: 'error' macro redefined #define error Rf_error ^ untgz.c:21:9: note: previous definition is here #define error R_error ^ untgz.c:482:42: warning: incompatible pointer types passing 'char [512]' to parameter of type 'union tar_buffer *' [-Wincompatible-pointer-types] len = src->read(src->data, fname, BLOCKSIZE, src); ^~~~~ 2 warnings generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/tmp/fink-build-HOME.eJjuLB7wBz/zlib-1.2.3 -I/tmp/fink-build-HOME.eJjuLB7wBz/bzip2-1.0.3 -Dunix -I/sw/include -fPIC -g -O3 -c unzip.c -o unzip.o unzip.c:723:49: warning: passing 'const char *' to parameter of type 'char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] szFileName,fileNameBufferSize, ^~~~~~~~~~ unzip.c:558:53: note: passing argument to parameter 'szFileName' here char *szFileName, uLong fileNameBufferSize, ^ unzip.c:725:49: warning: passing 'const char *' to parameter of type 'char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] szComment,commentBufferSize); ^~~~~~~~~ unzip.c:560:53: note: passing argument to parameter 'szComment' here char *szComment, uLong commentBufferSize) ^ unzip.c:1179:46: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] if ((pfile_in_zip_read_info->read_buffer == NULL)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ unzip.c:1179:46: note: remove extraneous parentheses around the comparison to silence this warning if ((pfile_in_zip_read_info->read_buffer == NULL)) ~ ^ ~ unzip.c:1179:46: note: use '=' to turn this equality comparison into an assignment if ((pfile_in_zip_read_info->read_buffer == NULL)) ^~ = 3 warnings generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/tmp/fink-build-HOME.eJjuLB7wBz/zlib-1.2.3 -I/tmp/fink-build-HOME.eJjuLB7wBz/bzip2-1.0.3 -Dunix -I/sw/include -fPIC -g -O3 -c unzipMemory.c -o unzipMemory.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/tmp/fink-build-HOME.eJjuLB7wBz/zlib-1.2.3 -I/tmp/fink-build-HOME.eJjuLB7wBz/bzip2-1.0.3 -Dunix -I/sw/include -fPIC -g -O3 -c zip.c -o zip.o zip.c:761:15: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] if ((level==2)) ~~~~~^~~ zip.c:761:15: note: remove extraneous parentheses around the comparison to silence this warning if ((level==2)) ~ ^ ~ zip.c:761:15: note: use '=' to turn this equality comparison into an assignment if ((level==2)) ^~ = zip.c:763:15: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] if ((level==1)) ~~~~~^~~ zip.c:763:15: note: remove extraneous parentheses around the comparison to silence this warning if ((level==1)) ~ ^ ~ zip.c:763:15: note: use '=' to turn this equality comparison into an assignment if ((level==1)) ^~ = 2 warnings generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/tmp/fink-build-HOME.eJjuLB7wBz/zlib-1.2.3 -I/tmp/fink-build-HOME.eJjuLB7wBz/bzip2-1.0.3 -Dunix -I/sw/include -fPIC -g -O3 -c zlib.c -o zlib.o flag-sort -r gcc -ffor-scope -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib -o Rcompression.dylib RConverters.o Runtgz.o Runzip.o Runzip_man.o Rzip.o bzip2.o ioapi.o miniunz.o minizip.o untgz.o unzip.o unzipMemory.o zip.o zlib.o -L/tmp/fink-build-HOME.eJjuLB7wBz/zlib-1.2.3 -lz -L/tmp/fink-build-HOME.eJjuLB7wBz/bzip2-1.0.3 -lbz2 -L/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation ld: warning: directory not found for option '-L/tmp/fink-build-HOME.eJjuLB7wBz/zlib-1.2.3' ld: warning: directory not found for option '-L/tmp/fink-build-HOME.eJjuLB7wBz/bzip2-1.0.3' installing to /sw/build.build/root-cran-rcompression-r31-0.93-2-1/sw/lib/R/3.1/site-library/Rcompression/libs ** R ** inst ** preparing package for lazy loading Creating a generic function for 'load' from package 'base' in package 'Rcompression' ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (Rcompression) install_name_tool -id /sw/lib/R/3.1/site-library/Rcompression/libs/Rcompression.dylib /sw/build.build/root-cran-rcompression-r31-0.93-2-1/sw/lib/R/3.1/site-library/Rcompression/libs/Rcompression.dylib sudo -u fink-bld [ENV] sh -c /tmp/fink.hvV09 /bin/rm -f /sw/build.build/root-cran-rcompression-r31-0.93-2-1/sw/info/dir /sw/build.build/root-cran-rcompression-r31-0.93-2-1/sw/info/dir.old /sw/build.build/root-cran-rcompression-r31-0.93-2-1/sw/share/info/dir /sw/build.build/root-cran-rcompression-r31-0.93-2-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-rcompression-r31-0.93-2-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-rcompression-r31' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-rcompression-r31_0.93-2-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-rcompression-r31-0.93-2-1 (Reading database ... 7379 files and directories currently installed.) Removing fink-buildlock-cran-rcompression-r31-0.93-2-1 ...