printf ' ' | fink --no-use-binary-dist --yes rebuild cran-rggobi-r31 2>&1 The package 'cran-rggobi-r31' will be built without being installed. Reading build dependency for cran-rggobi-r31-2.1.20-1... Reading dependency for cran-rggobi-r31-2.1.20-1... Reading build conflict for cran-rggobi-r31-2.1.20-1... The following package will be rebuilt: cran-rggobi-r31 Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-rggobi-r31-2.1.20-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-rggobi-r31-2.1.20-1' in `/sw/build.build/fink-buildlock-cran-rggobi-r31-2.1.20-1_2014.08.02-01.34.13_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-rggobi-r31-2.1.20-1_2014.08.02-01.34.13_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-rggobi-r31-2.1.20-1. (Reading database ... 11453 files and directories currently installed.) Unpacking fink-buildlock-cran-rggobi-r31-2.1.20-1 (from .../fink-buildlock-cran-rggobi-r31-2.1.20-1_2014.08.02-01.34.13_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-rggobi-r31-2.1.20-1 (2014.08.02-01.34.13) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.mCyr6 env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/rggobi_2.1.20.tar.gz rggobi/ rggobi/configure.in rggobi/src/ rggobi/src/io.c rggobi/src/RSGGobiEntryPoints.h rggobi/src/RSEval.c rggobi/src/conversion.h rggobi/src/RSEval.h rggobi/src/conversion.c rggobi/src/RSCommon.h rggobi/src/keyHandlers.c rggobi/src/plugins.c rggobi/src/Makevars.win.in rggobi/src/utils.c rggobi/src/colorSchemes.c rggobi/src/RUtils.h rggobi/src/ui.c rggobi/src/session.c rggobi/src/identify.c rggobi/src/displays.c rggobi/src/ggobi.c rggobi/src/data.c rggobi/src/edges.c rggobi/src/Makevars.in rggobi/src/brush.c rggobi/src/modes.c rggobi/src/print.c rggobi/src/dataset.c rggobi/src/plots.c rggobi/src/RSGGobi.h rggobi/src/Makevars.win rggobi/src/init.c rggobi/src/display.c rggobi/src/plot.c rggobi/src/longitudinal.c rggobi/src/smooth.c rggobi/NAMESPACE rggobi/demo/ rggobi/demo/ball.R rggobi/demo/00Index rggobi/CHANGELOG rggobi/NEWS rggobi/data/ rggobi/data/stormtracks.rda rggobi/R/ rggobi/R/display-modes.r rggobi/R/display-tour.r rggobi/R/plot.r rggobi/R/gtk.r rggobi/R/utils.r rggobi/R/datasets.r rggobi/R/glyphs.r rggobi/R/call.r rggobi/R/next-version/ rggobi/R/next-version/brush.r rggobi/R/next-version/plotLayout.S rggobi/R/next-version/colour-schemes.r rggobi/R/next-version/PlotDescriptions.S rggobi/R/next-version/brush.S rggobi/R/next-version/options.r rggobi/R/zzz.r rggobi/R/display-variables.r rggobi/R/longitudinal.r rggobi/R/data.r rggobi/R/ggobi.r rggobi/R/display.r rggobi/R/edges.r rggobi/R/colorSchemes.r rggobi/README.md rggobi/MD5 rggobi/DESCRIPTION rggobi/configure rggobi/man/ rggobi/man/ggobi-symbol-ec.rd rggobi/man/variables---GGobiDisplay-a6.rd rggobi/man/ggobi-display-types-9g.rd rggobi/man/glyph-colour-GGobiData-p2.rd rggobi/man/ggobi-display-get-tour-projection-p0.rd rggobi/man/stormtracks.rd rggobi/man/GGobiCall-n1.rd rggobi/man/get--GGobi-7p.rd rggobi/man/ggobi-display-make-type-3r.rd rggobi/man/display-GGobiData-vz.rd rggobi/man/summary-GGobi-c4.rd rggobi/man/ggobi-find-file-fe.rd rggobi/man/nrow-GGobiData-om.rd rggobi/man/check-versions-xs.rd rggobi/man/ggobi-data-set-variable-43.rd rggobi/man/as-RGtkObject-8g.rd rggobi/man/displays-kj.rd rggobi/man/ggobi-data-add-variable-xu.rd rggobi/man/pmode-ix.rd rggobi/man/excluded---GGobiData-3z.rd rggobi/man/set--GGobi-b7.rd rggobi/man/imode-8g.rd rggobi/man/ggobi-gtk-menu-bar-j4.rd rggobi/man/ggobi-set-data-frame-vy.rd rggobi/man/ggobi-data-remove-variable-bv.rd rggobi/man/rownames-GGobiData-pv.rd rggobi/man/variables--1i.rd rggobi/man/ggobi-longitudinal-2e.rd rggobi/man/ggobi-get-2m.rd rggobi/man/names---GGobiData-p2.rd rggobi/man/variable-index-h9.rd rggobi/man/ggobi-default-20.rd rggobi/man/mapGlyphType-t9.rd rggobi/man/display-ce.rd rggobi/man/connecting-edges-vf.rd rggobi/man/set--GGobiData-56.rd rggobi/man/summary-GGobiData-mm.rd rggobi/man/dataset-numeric-gd.rd rggobi/man/glyph-type-GGobiData-og.rd rggobi/man/glyph-size---GGobiData-9w.rd rggobi/man/names-GGobi-pt.rd rggobi/man/dataset-GGobiDisplay-gk.rd rggobi/man/ids---GGobiData-mw.rd rggobi/man/ncol-GGobiData-p3.rd rggobi/man/glyph-type---GGobiData-r1.rd rggobi/man/ggobi-GGobiDisplay-zh.rd rggobi/man/print-GGobiDisplay-o0.rd rggobi/man/clean-ggobi-bw.rd rggobi/man/print-GGobi-yo.rd rggobi/man/close-GGobiDisplay-ke.rd rggobi/man/displays-GGobi-n2.rd rggobi/man/dataset-mn.rd rggobi/man/get--GGobiData-9v.rd rggobi/man/shadowed---GGobiData-h7.rd rggobi/man/edges-lk.rd rggobi/man/dimnames-GGobiData-x0.rd rggobi/man/edges---GGobiDisplay-1y.rd rggobi/man/GGobiData-class.rd rggobi/man/ggobi-pcp-c7.rd rggobi/man/rownames---GGobiData-rg.rd rggobi/man/colorscheme-6n.rd rggobi/man/variables-2n.rd rggobi/man/edges---GGobiData-qe.rd rggobi/man/ggobi-display-save-picture-bw.rd rggobi/man/edges--p8.rd rggobi/man/as-data-frame-GGobiData-i6.rd rggobi/man/ggobi-count-u4.rd rggobi/man/dimnames---GGobiData-ds.rd rggobi/man/dim-GGobiData-ok.rd rggobi/man/excluded-GGobiData-ic.rd rggobi/man/excluded-ec.rd rggobi/man/names-GGobiData-c0.rd rggobi/man/close-GGobi-kz.rd rggobi/man/ggobi-gtk-main-window-l6.rd rggobi/man/glyph-colour---GGobiData-u7.rd rggobi/man/ggobi-check-structs-qq.rd rggobi/man/glyph-size-GGobiData-3t.rd rggobi/man/edges---GGobi-m7.rd rggobi/man/pmodes-tc.rd rggobi/man/ggobi-set-data-file-be.rd rggobi/man/ids-GGobiData-yu.rd rggobi/man/colorscheme--b2.rd rggobi/man/print-GGobiData-ja.rd rggobi/man/ggobi-display-set-tour-projection-2n.rd rggobi/man/ggobi-version-ao.rd rggobi/man/valid-ggobi-uv.rd rggobi/man/length-GGobiDisplay-gt.rd rggobi/man/variables-GGobiDisplay-si.rd rggobi/man/selected-GGobiData-xv.rd rggobi/man/shadowed-GGobiData-8b.rd rggobi/configure.win rggobi/cleanup rggobi/LICENSE sudo -u fink-bld [ENV] sh -c /tmp/fink.nLWdw /tmp/fink.M2X07 #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-rggobi-r31-2.1.20-1/rggobi/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R pushd .. /sw/build.build/cran-rggobi-r31-2.1.20-1 /sw/build.build/cran-rggobi-r31-2.1.20-1/rggobi $BIN_R --verbose CMD build --no-build-vignettes rggobi * checking for file 'rggobi/DESCRIPTION' ... OK * preparing 'rggobi': * checking DESCRIPTION meta-information ... OK * cleaning src * running 'cleanup' * checking for LF line-endings in source and make files * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added * building 'rggobi_2.1.20.tar.gz' /bin/rm -rf /sw/build.build/root-cran-rggobi-r31-2.1.20-1 /bin/mkdir -p /sw/build.build/root-cran-rggobi-r31-2.1.20-1/sw /bin/mkdir -p /sw/build.build/root-cran-rggobi-r31-2.1.20-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-rggobi-r31-2.1.20-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.Pg8JL /tmp/fink.MFoic #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R mkdir -p /sw/build.build/root-cran-rggobi-r31-2.1.20-1/sw/lib/R/3.1/site-library pushd /sw/build.build/cran-rggobi-r31-2.1.20-1/rggobi/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-rggobi-r31-2.1.20-1/sw/lib/R/3.1/site-library rggobi /sw/build.build/cran-rggobi-r31-2.1.20-1 /sw/build.build/cran-rggobi-r31-2.1.20-1/rggobi * installing *source* package 'rggobi' ... ** package 'rggobi' successfully unpacked and MD5 sums checked checking for pkg-config... /sw/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GGOBI... no configure: error: Package requirements (ggobi >= 2.1.6) were not met: Package 'libxml-2.0', required by 'ggobi', not found Consider adjusting the PKG_CONFIG_PATH environment variable if you installed software in a non-standard prefix. Alternatively, you may set the environment variables GGOBI_CFLAGS and GGOBI_LIBS to avoid the need to call pkg-config. See the pkg-config man page for more details. ERROR: configuration failed for package 'rggobi' * removing '/sw/build.build/root-cran-rggobi-r31-2.1.20-1/sw/lib/R/3.1/site-library/rggobi' ### execution of /tmp/fink.MFoic failed, exit code 1 ### execution of /tmp/fink.Pg8JL failed, exit code 1 Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-rggobi-r31-2.1.20-1 (Reading database ... 11454 files and directories currently installed.) Removing fink-buildlock-cran-rggobi-r31-2.1.20-1 ... Failed: phase installing: cran-rggobi-r31-2.1.20-1 failed Before reporting any errors, please run "fink selfupdate" and try again. Also try using "fink configure" to set your maximum build jobs to 1 and attempt to build the package again. If you continue to have issues, please check to see if the FAQ on Fink's website solves the problem. If not, ask on one (not both, please) of these mailing lists: The Fink Users List The Fink Beginners List , with a carbon copy to the maintainer: Jack Howarth Note that this is preferable to emailing just the maintainer directly, since most fink package maintainers do not have access to all possible hardware and software configurations. Please try to include the complete error message in your report. This generally consists of a compiler line starting with e.g. "gcc" or "g++" followed by the actual error output from the compiler. Also include the following system information: Package manager version: 0.37.0 Distribution version: selfupdate-cvs Thu Jul 24 20:26:24 2014, 10.9, x86_64 Trees: local/main stable/main Xcode.app: 5.1.1 Xcode command-line tools: 6.0.0.0.1.1405597879 Max. Fink build jobs: 8