printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-rgtk2extras-r31 2>&1 The package 'cran-rgtk2extras-r31' will be built without being installed. Reading build dependency for cran-rgtk2extras-r31-0.6.1-1... Reading dependency for cran-rgtk2extras-r31-0.6.1-1... Reading build conflict for cran-rgtk2extras-r31-0.6.1-1... The package 'cran-rgtk2-r31' will be installed. Reading dependency for cran-rgtk2-r31-2.20.27-1... Reading runtime dependency for cran-rgtk2-r31-2.20.27-1... The package 'atk1-shlibs' will be installed. Reading dependency for atk1-shlibs-1.32.0-1... Reading runtime dependency for atk1-shlibs-1.32.0-1... The package 'gtk+2-shlibs' will be installed. Reading dependency for gtk+2-shlibs-2.18.9-11... Reading runtime dependency for gtk+2-shlibs-2.18.9-11... The package 'libjasper.1-shlibs' will be installed. Reading dependency for libjasper.1-shlibs-1.900.1-5... Reading runtime dependency for libjasper.1-shlibs-1.900.1-5... The package 'shared-mime-info' will be installed. Reading dependency for shared-mime-info-1.3-1... Reading runtime dependency for shared-mime-info-1.3-1... The package 'libxml2-shlibs' will be installed. Reading dependency for libxml2-shlibs-2.9.1-3... Reading runtime dependency for libxml2-shlibs-2.9.1-3... The package 'pkgconfig' will be installed. Reading dependency for pkgconfig-0.28-1... Reading runtime dependency for pkgconfig-0.28-1... The following package will be rebuilt: cran-rgtk2extras-r31 The following 7 additional packages will be installed: atk1-shlibs cran-rgtk2-r31 gtk+2-shlibs libjasper.1-shlibs libxml2-shlibs pkgconfig shared-mime-info Do you want to continue? [Y/n] (assuming default) Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/gnome/atk1-shlibs_1.32.0-1_darwin-x86_64.deb Selecting previously deselected package atk1-shlibs. (Reading database ... 7815 files and directories currently installed.) Unpacking atk1-shlibs (from .../atk1-shlibs_1.32.0-1_darwin-x86_64.deb) ... Setting up atk1-shlibs (1.32.0-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjasper.1-shlibs_1.900.1-5_darwin-x86_64.deb Selecting previously deselected package libjasper.1-shlibs. (Reading database ... 7930 files and directories currently installed.) Unpacking libjasper.1-shlibs (from .../libjasper.1-shlibs_1.900.1-5_darwin-x86_64.deb) ... Setting up libjasper.1-shlibs (1.900.1-5) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libxml2-shlibs_2.9.1-3_darwin-x86_64.deb Selecting previously deselected package libxml2-shlibs. (Reading database ... 7939 files and directories currently installed.) Unpacking libxml2-shlibs (from .../libxml2-shlibs_2.9.1-3_darwin-x86_64.deb) ... Setting up libxml2-shlibs (2.9.1-3) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/pkgconfig_0.28-1_darwin-x86_64.deb Selecting previously deselected package pkgconfig. (Reading database ... 7943 files and directories currently installed.) Unpacking pkgconfig (from .../pkgconfig_0.28-1_darwin-x86_64.deb) ... Setting up pkgconfig (0.28-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/shared-mime-info_1.3-1_darwin-x86_64.deb Selecting previously deselected package shared-mime-info. (Reading database ... 7957 files and directories currently installed.) Unpacking shared-mime-info (from .../shared-mime-info_1.3-1_darwin-x86_64.deb) ... Setting up shared-mime-info (1.3-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/gnome/gtk+2-shlibs_2.18.9-11_darwin-x86_64.deb Selecting previously deselected package gtk+2-shlibs. (Reading database ... 8755 files and directories currently installed.) Unpacking gtk+2-shlibs (from .../gtk+2-shlibs_2.18.9-11_darwin-x86_64.deb) ... Setting up gtk+2-shlibs (2.18.9-11) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/cran-rgtk2-r31_2.20.27-1_darwin-x86_64.deb Selecting previously deselected package cran-rgtk2-r31. (Reading database ... 9093 files and directories currently installed.) Unpacking cran-rgtk2-r31 (from .../cran-rgtk2-r31_2.20.27-1_darwin-x86_64.deb) ... Setting up cran-rgtk2-r31 (2.20.27-1) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-rgtk2extras-r31-0.6.1-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-rgtk2extras-r31-0.6.1-1' in `/sw/build.build/fink-buildlock-cran-rgtk2extras-r31-0.6.1-1_2014.08.06-04.02.52_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-rgtk2extras-r31-0.6.1-1_2014.08.06-04.02.52_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-rgtk2extras-r31-0.6.1-1. (Reading database ... 9299 files and directories currently installed.) Unpacking fink-buildlock-cran-rgtk2extras-r31-0.6.1-1 (from .../fink-buildlock-cran-rgtk2extras-r31-0.6.1-1_2014.08.06-04.02.52_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-rgtk2extras-r31-0.6.1-1 (2014.08.06-04.02.52) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.yE0tw env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/RGtk2Extras_0.6.1.tar.gz RGtk2Extras/ RGtk2Extras/MD5 RGtk2Extras/src/ RGtk2Extras/src/interrupt.c RGtk2Extras/demo/ RGtk2Extras/demo/MakeAngle.r RGtk2Extras/demo/00Index RGtk2Extras/demo/ProgressBar.r RGtk2Extras/NAMESPACE RGtk2Extras/DESCRIPTION RGtk2Extras/man/ RGtk2Extras/man/get_all_tables.Rd RGtk2Extras/man/my_choose_files.Rd RGtk2Extras/man/object.exists.Rd RGtk2Extras/man/gtkDfEditGetRowNames.Rd RGtk2Extras/man/GetTaskPasteIn.Rd RGtk2Extras/man/gtkDfEditGetDataFrame.Rd RGtk2Extras/man/gtkDfEditGetDimension.Rd RGtk2Extras/man/gtkDfEditGetDatasetName.Rd RGtk2Extras/man/gtkDfEditSort.rd RGtk2Extras/man/gtkDfEditCommandData.Rd RGtk2Extras/man/safe.eval.rd RGtk2Extras/man/gtkDfEdit.rd RGtk2Extras/man/gtkDfEditDoTask.rd RGtk2Extras/man/gtkDfEditGetColumnNames.Rd RGtk2Extras/man/gtkDfEditGetModel.Rd RGtk2Extras/man/gtkDfEditSetActionHandler.rd RGtk2Extras/man/set.value.Rd RGtk2Extras/man/gtkDfEditUndo.rd RGtk2Extras/man/gtkDfEditGetSelection.Rd RGtk2Extras/man/gtkDfEditEditFactors.rd RGtk2Extras/man/get.value.Rd RGtk2Extras/man/dfview.Rd RGtk2Extras/man/dfedit.Rd RGtk2Extras/man/gtkDfEditSetDatasetName.Rd RGtk2Extras/man/run.dialog.Rd RGtk2Extras/man/quick_message.Rd RGtk2Extras/man/z[.GtkDfEdit.Rd RGtk2Extras/R/ RGtk2Extras/R/SimpleDialogMaker.r RGtk2Extras/R/gfile.r RGtk2Extras/R/edit.r RGtk2Extras/R/LongRunningTask.r sudo -u fink-bld [ENV] sh -c /tmp/fink.6jSw8 /tmp/fink.A_7Ak #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-rgtk2extras-r31-0.6.1-1/RGtk2Extras/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R pushd .. /sw/build.build/cran-rgtk2extras-r31-0.6.1-1 /sw/build.build/cran-rgtk2extras-r31-0.6.1-1/RGtk2Extras if [[ 3.1 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes RGtk2Extras else $BIN_R --verbose CMD build --no-vignettes RGtk2Extras fi * checking for file 'RGtk2Extras/DESCRIPTION' ... OK * preparing 'RGtk2Extras': * checking DESCRIPTION meta-information ... OK * cleaning src * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building 'RGtk2Extras_0.6.1.tar.gz' /bin/rm -rf /sw/build.build/root-cran-rgtk2extras-r31-0.6.1-1 /bin/mkdir -p /sw/build.build/root-cran-rgtk2extras-r31-0.6.1-1/sw /bin/mkdir -p /sw/build.build/root-cran-rgtk2extras-r31-0.6.1-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-rgtk2extras-r31-0.6.1-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.6fYSI /tmp/fink.WeFgS #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R mkdir -p /sw/build.build/root-cran-rgtk2extras-r31-0.6.1-1/sw/lib/R/3.1/site-library pushd /sw/build.build/cran-rgtk2extras-r31-0.6.1-1/RGtk2Extras/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-rgtk2extras-r31-0.6.1-1/sw/lib/R/3.1/site-library RGtk2Extras /sw/build.build/cran-rgtk2extras-r31-0.6.1-1 /sw/build.build/cran-rgtk2extras-r31-0.6.1-1/RGtk2Extras * installing *source* package 'RGtk2Extras' ... ** package 'RGtk2Extras' successfully unpacked and MD5 sums checked ** libs flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c interrupt.c -o interrupt.o flag-sort -r gcc -ffor-scope -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib -o RGtk2Extras.dylib interrupt.o -L/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation installing to /sw/build.build/root-cran-rgtk2extras-r31-0.6.1-1/sw/lib/R/3.1/site-library/RGtk2Extras/libs ** R ** demo ** preparing package for lazy loading R session is headless; GTK+ not initialized. ** help *** installing help indices ** building package indices ** testing if installed package can be loaded R session is headless; GTK+ not initialized. * DONE (RGtk2Extras) install_name_tool -id /sw/lib/R/3.1/site-library/RGtk2Extras/libs/RGtk2Extras.dylib /sw/build.build/root-cran-rgtk2extras-r31-0.6.1-1/sw/lib/R/3.1/site-library/RGtk2Extras/libs/RGtk2Extras.dylib sudo -u fink-bld [ENV] sh -c /tmp/fink.zN2bu /bin/rm -f /sw/build.build/root-cran-rgtk2extras-r31-0.6.1-1/sw/info/dir /sw/build.build/root-cran-rgtk2extras-r31-0.6.1-1/sw/info/dir.old /sw/build.build/root-cran-rgtk2extras-r31-0.6.1-1/sw/share/info/dir /sw/build.build/root-cran-rgtk2extras-r31-0.6.1-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-rgtk2extras-r31-0.6.1-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-rgtk2extras-r31' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-rgtk2extras-r31_0.6.1-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-rgtk2extras-r31-0.6.1-1 (Reading database ... 9300 files and directories currently installed.) Removing fink-buildlock-cran-rgtk2extras-r31-0.6.1-1 ...