printf ' ' | fink --no-use-binary-dist --yes rebuild cran-rjava-r31 2>&1 The package 'cran-rjava-r31' will be built without being installed. Reading build dependency for cran-rjava-r31-0.9-6-1... Reading dependency for cran-rjava-r31-0.9-6-1... Reading build conflict for cran-rjava-r31-0.9-6-1... The following package will be rebuilt: cran-rjava-r31 Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-rjava-r31-0.9-6-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-rjava-r31-0.9-6-1' in `/sw/build.build/fink-buildlock-cran-rjava-r31-0.9-6-1_2014.07.27-18.30.52_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-rjava-r31-0.9-6-1_2014.07.27-18.30.52_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-rjava-r31-0.9-6-1. (Reading database ... 7371 files and directories currently installed.) Unpacking fink-buildlock-cran-rjava-r31-0.9-6-1 (from .../fink-buildlock-cran-rjava-r31-0.9-6-1_2014.07.27-18.30.52_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-rjava-r31-0.9-6-1 (2014.07.27-18.30.52) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.B9tsR env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/rJava_0.9-6.tar.gz rJava/ rJava/inst/ rJava/inst/java/ rJava/inst/java/FlatException.class rJava/inst/java/RJavaTools_Test$TestException.class rJava/inst/java/ObjectArrayException.java rJava/inst/java/RJavaTools.java rJava/inst/java/FlatException.java rJava/inst/java/ArrayDimensionException.class rJava/inst/java/RJavaComparator.java rJava/inst/java/RJavaArrayTools_Test.class rJava/inst/java/NotAnArrayException.java rJava/inst/java/RectangularArrayBuilder_Test.class rJava/inst/java/RJavaTools_Test.java rJava/inst/java/RectangularArraySummary.java rJava/inst/java/RJavaImport.java rJava/inst/java/RJavaArrayIterator.java rJava/inst/java/TestException.java rJava/inst/java/RJavaArrayIterator.class rJava/inst/java/RJavaTools_Test$ExampleClass.class rJava/inst/java/RectangularArrayBuilder.class rJava/inst/java/RJavaArrayTools.java rJava/inst/java/ArrayWrapper.java rJava/inst/java/ArrayWrapper_Test.java rJava/inst/java/RJavaTools.class rJava/inst/java/RectangularArrayBuilder_Test.java rJava/inst/java/TestException.class rJava/inst/java/ArrayWrapper_Test.class rJava/inst/java/RJavaTools_Test$DummyNonStaticClass.class rJava/inst/java/RJavaArrayTools_Test.java rJava/inst/java/RJavaArrayTools$ArrayDimensionMismatchException.class rJava/inst/java/PrimitiveArrayException.class rJava/inst/java/ArrayDimensionException.java rJava/inst/java/NotComparableException.class rJava/inst/java/NotComparableException.java rJava/inst/java/RJavaArrayTools.class rJava/inst/java/DummyPoint.class rJava/inst/java/ObjectArrayException.class rJava/inst/java/DummyPoint.java rJava/inst/java/RectangularArrayExamples.java rJava/inst/java/RJavaComparator.class rJava/inst/java/boot/ rJava/inst/java/boot/RJavaClassLoader.class rJava/inst/java/boot/RJavaClassLoader$UnixDirectory.class rJava/inst/java/boot/RJavaClassLoader$UnixFile.class rJava/inst/java/boot/RJavaClassLoader$UnixJarFile.class rJava/inst/java/boot/RJavaClassLoader$RJavaObjectInputStream.class rJava/inst/java/boot/RJavaClassLoader.java rJava/inst/java/RectangularArrayExamples.class rJava/inst/java/RJavaImport.class rJava/inst/java/RectangularArraySummary.class rJava/inst/java/RectangularArrayBuilder.java rJava/inst/java/RJavaTools_Test.class rJava/inst/java/PrimitiveArrayException.java rJava/inst/java/NotAnArrayException.class rJava/inst/java/ArrayWrapper.class rJava/inst/jri/ rJava/inst/jri/REngine.jar rJava/inst/jri/JRIEngine.jar rJava/inst/javadoc/ rJava/inst/javadoc/ArrayWrapper_Test.html rJava/inst/javadoc/RJavaArrayTools.html rJava/inst/javadoc/ArrayWrapper.html rJava/inst/javadoc/package-summary.html rJava/inst/javadoc/help-doc.html rJava/inst/javadoc/index.html rJava/inst/javadoc/RectangularArrayBuilder_Test.html rJava/inst/javadoc/TestException.html rJava/inst/javadoc/ArrayDimensionException.html rJava/inst/javadoc/RJavaTools_Test.DummyNonStaticClass.html rJava/inst/javadoc/serialized-form.html rJava/inst/javadoc/RectangularArraySummary.html rJava/inst/javadoc/RJavaImport.html rJava/inst/javadoc/stylesheet.css rJava/inst/javadoc/ObjectArrayException.html rJava/inst/javadoc/package-list rJava/inst/javadoc/overview-tree.html rJava/inst/javadoc/FlatException.html rJava/inst/javadoc/deprecated-list.html rJava/inst/javadoc/RJavaTools.html rJava/inst/javadoc/RJavaArrayIterator.html rJava/inst/javadoc/constant-values.html rJava/inst/javadoc/resources/ rJava/inst/javadoc/resources/background.gif rJava/inst/javadoc/resources/titlebar.gif rJava/inst/javadoc/resources/tab.gif rJava/inst/javadoc/resources/titlebar_end.gif rJava/inst/javadoc/package-tree.html rJava/inst/javadoc/RJavaArrayTools.ArrayDimensionMismatchException.html rJava/inst/javadoc/package-frame.html rJava/inst/javadoc/PrimitiveArrayException.html rJava/inst/javadoc/DummyPoint.html rJava/inst/javadoc/RJavaArrayTools_Test.html rJava/inst/javadoc/NotComparableException.html rJava/inst/javadoc/index-all.html rJava/inst/javadoc/NotAnArrayException.html rJava/inst/javadoc/RJavaTools_Test.html rJava/inst/javadoc/RectangularArrayExamples.html rJava/inst/javadoc/allclasses-noframe.html rJava/inst/javadoc/RJavaComparator.html rJava/inst/javadoc/RJavaTools_Test.TestException.html rJava/inst/javadoc/allclasses-frame.html rJava/inst/javadoc/RJavaClassLoader.html rJava/inst/javadoc/RectangularArrayBuilder.html rJava/configure.ac rJava/getsp.java rJava/src/ rJava/src/arrayc.c rJava/src/Rglue.c rJava/src/jvm-w32/ rJava/src/jvm-w32/Makefile rJava/src/jvm-w32/jvm.def rJava/src/jvm-w32/config.h rJava/src/jvm-w32/findjava.c rJava/src/jvm-w32/jvm64.def rJava/src/jvm-w32/WinRegistry.c rJava/src/fields.c rJava/src/config.h.in rJava/src/install.libs.R rJava/src/jri_glue.c rJava/src/loader.c rJava/src/rJava.h rJava/src/java/ rJava/src/java/FlatException.class rJava/src/java/Makefile rJava/src/java/RJavaTools_Test$TestException.class rJava/src/java/ObjectArrayException.java rJava/src/java/RJavaClassLoader.class rJava/src/java/RJavaTools.java rJava/src/java/FlatException.java rJava/src/java/RJavaClassLoader$UnixDirectory.class rJava/src/java/ArrayDimensionException.class rJava/src/java/RJavaComparator.java rJava/src/java/RJavaArrayTools_Test.class rJava/src/java/NotAnArrayException.java rJava/src/java/RectangularArrayBuilder_Test.class rJava/src/java/RJavaTools_Test.java rJava/src/java/RectangularArraySummary.java rJava/src/java/RJavaImport.java rJava/src/java/RJavaArrayIterator.java rJava/src/java/TestException.java rJava/src/java/RJavaArrayIterator.class rJava/src/java/RJavaTools_Test$ExampleClass.class rJava/src/java/RectangularArrayBuilder.class rJava/src/java/RJavaArrayTools.java rJava/src/java/ArrayWrapper.java rJava/src/java/ArrayWrapper_Test.java rJava/src/java/RJavaTools.class rJava/src/java/RectangularArrayBuilder_Test.java rJava/src/java/TestException.class rJava/src/java/RJavaClassLoader$UnixFile.class rJava/src/java/ArrayWrapper_Test.class rJava/src/java/RJavaTools_Test$DummyNonStaticClass.class rJava/src/java/RJavaClassLoader$UnixJarFile.class rJava/src/java/RJavaArrayTools_Test.java rJava/src/java/RJavaArrayTools$ArrayDimensionMismatchException.class rJava/src/java/RJavaClassLoader$RJavaObjectInputStream.class rJava/src/java/PrimitiveArrayException.class rJava/src/java/ArrayDimensionException.java rJava/src/java/NotComparableException.class rJava/src/java/NotComparableException.java rJava/src/java/RJavaArrayTools.class rJava/src/java/DummyPoint.class rJava/src/java/ObjectArrayException.class rJava/src/java/DummyPoint.java rJava/src/java/RectangularArrayExamples.java rJava/src/java/RJavaComparator.class rJava/src/java/RJavaClassLoader.java rJava/src/java/RectangularArrayExamples.class rJava/src/java/RJavaImport.class rJava/src/java/RectangularArraySummary.class rJava/src/java/RectangularArrayBuilder.java rJava/src/java/RJavaTools_Test.class rJava/src/java/PrimitiveArrayException.java rJava/src/java/NotAnArrayException.class rJava/src/java/ArrayWrapper.class rJava/src/otables.c rJava/src/Makevars.in rJava/src/tools.c rJava/src/callback.c rJava/src/callJNI.c rJava/src/Makevars.win rJava/src/init.c rJava/src/callback.h rJava/src/rJava.c rJava/NAMESPACE rJava/getsp.class rJava/install-sh rJava/version rJava/NEWS rJava/R/ rJava/R/memprof.R rJava/R/jri.R rJava/R/reflection.R rJava/R/zzz.R.in rJava/R/comparison.R rJava/R/completion.R rJava/R/arrays.R rJava/R/methods.R rJava/R/windows/ rJava/R/windows/FirstLib.R rJava/R/options.R rJava/R/exceptions.R rJava/R/import.R rJava/R/0classes.R rJava/R/tools.R rJava/R/serialize.R rJava/R/rep.R rJava/R/converter.R rJava/R/with.R rJava/R/loader.R rJava/R/jfirst.R rJava/R/J.R rJava/R/instanceof.R rJava/R/call.R rJava/R/jinit.R rJava/MD5 rJava/DESCRIPTION rJava/jri/ rJava/jri/Mutex.java rJava/jri/RBool.java rJava/jri/examples/ rJava/jri/examples/rtest.java rJava/jri/examples/rtest2.java rJava/jri/configure.ac rJava/jri/run.in rJava/jri/src/ rJava/jri/src/jri.h rJava/jri/src/Rengine.c rJava/jri/src/win32/ rJava/jri/src/win32/Makefile rJava/jri/src/win32/jvm.def rJava/jri/src/win32/findjava.c rJava/jri/src/win32/jvm64.def rJava/jri/src/h2ic rJava/jri/src/config.h.in rJava/jri/src/Rcallbacks.h rJava/jri/src/Makefile.in rJava/jri/src/Makefile.all rJava/jri/src/Makefile.win rJava/jri/src/Rdecl.h rJava/jri/src/globals.c rJava/jri/src/Rinit.h rJava/jri/src/Rcallbacks.c rJava/jri/src/rjava.h rJava/jri/src/jri.c rJava/jri/src/globals.h rJava/jri/src/Rinit.c rJava/jri/src/rjava.c rJava/jri/RConsoleOutputStream.java rJava/jri/Rengine.java rJava/jri/version rJava/jri/Makefile.in rJava/jri/NEWS rJava/jri/Makefile.all rJava/jri/LGPL.txt rJava/jri/Makefile.win rJava/jri/README rJava/jri/REXP.java rJava/jri/RVector.java rJava/jri/bootstrap/ rJava/jri/bootstrap/Makefile rJava/jri/bootstrap/JRIBootstrap.h rJava/jri/bootstrap/JRIBootstrap.c rJava/jri/bootstrap/mft rJava/jri/bootstrap/JRIBootstrap.java rJava/jri/bootstrap/DelegatedClassLoader.java rJava/jri/bootstrap/DelegatedURLClassLoader.java rJava/jri/bootstrap/Boot.java rJava/jri/bootstrap/JRIClassLoader.java rJava/jri/configure rJava/jri/configure.win rJava/jri/RList.java rJava/jri/tools/ rJava/jri/tools/getsp.java rJava/jri/tools/getsp.class rJava/jri/tools/install-sh rJava/jri/tools/mkinstalldirs rJava/jri/tools/config.guess rJava/jri/tools/config.sub rJava/jri/RFactor.java rJava/jri/Makevars.win rJava/jri/RMainLoopCallbacks.java rJava/jri/LICENSE rJava/jri/package-info.java rJava/configure rJava/man/ rJava/man/jengine.Rd rJava/man/loader.Rd rJava/man/J.Rd rJava/man/show.Rd rJava/man/jserialize.Rd rJava/man/jrectRef-class.Rd rJava/man/jsimplify.Rd rJava/man/rep.Rd rJava/man/instanceof.Rd rJava/man/jclassName.Rd rJava/man/jcastToArray.Rd rJava/man/jinit.Rd rJava/man/new.Rd rJava/man/jcheck.Rd rJava/man/jobjRef-class.Rd rJava/man/jreflection.Rd rJava/man/jfloat-class.Rd rJava/man/javaImport.Rd rJava/man/clone.Rd rJava/man/jfloat.Rd rJava/man/jequals.Rd rJava/man/accessOp.Rd rJava/man/Exceptions.Rd rJava/man/jfield.Rd rJava/man/aslist.Rd rJava/man/jpackage.Rd rJava/man/with.Rd rJava/man/toJava.Rd rJava/man/jnull.Rd rJava/man/jcast.Rd rJava/man/jnew.Rd rJava/man/jmemprof.Rd rJava/man/jarrayRef-class.Rd rJava/man/java-tools.Rd rJava/man/jcall.Rd rJava/man/jarray.Rd rJava/configure.win sudo -u fink-bld [ENV] sh -c /tmp/fink._IpXD /tmp/fink.DR8Ld #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-rjava-r31-0.9-6-1/rJava/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R pushd .. /sw/build.build/cran-rjava-r31-0.9-6-1 /sw/build.build/cran-rjava-r31-0.9-6-1/rJava $BIN_R --verbose CMD build --no-build-vignettes rJava * checking for file 'rJava/DESCRIPTION' ... OK * preparing 'rJava': * checking DESCRIPTION meta-information ... OK * cleaning src * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building 'rJava_0.9-6.tar.gz' /bin/rm -rf /sw/build.build/root-cran-rjava-r31-0.9-6-1 /bin/mkdir -p /sw/build.build/root-cran-rjava-r31-0.9-6-1/sw /bin/mkdir -p /sw/build.build/root-cran-rjava-r31-0.9-6-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-rjava-r31-0.9-6-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.UXRt7 /tmp/fink.hx5EN #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R mkdir -p /sw/build.build/root-cran-rjava-r31-0.9-6-1/sw/lib/R/3.1/site-library pushd /sw/build.build/cran-rjava-r31-0.9-6-1/rJava/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-rjava-r31-0.9-6-1/sw/lib/R/3.1/site-library rJava /sw/build.build/cran-rjava-r31-0.9-6-1 /sw/build.build/cran-rjava-r31-0.9-6-1/rJava * installing *source* package 'rJava' ... ** package 'rJava' successfully unpacked and MD5 sums checked checking for gcc... flag-sort -r gcc -ffor-scope checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether flag-sort -r gcc -ffor-scope accepts -g... yes checking for flag-sort -r gcc -ffor-scope option to accept ISO C89... none needed checking how to run the C preprocessor... flag-sort -r gcc -ffor-scope -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking whether time.h and sys/time.h may both be included... yes configure: checking whether flag-sort -r gcc -ffor-scope supports static inline... yes checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking Java support in R... present: interpreter : '/usr/bin/java' archiver : '/usr/bin/jar' compiler : '/usr/bin/javac' header prep.: '/usr/bin/javah' cpp flags : '-I/System/Library/Frameworks/JavaVM.framework/Headers' java libs : '-framework JavaVM' checking whether Java run-time works... yes checking whether -Xrs is supported... yes checking whether JNI programs can be compiled... yes checking JNI data types... ok checking whether JRI should be compiled (autodetect)... yes checking whether debugging output should be enabled... no checking whether memory profiling is desired... no checking whether threads support is requested... no checking whether callbacks support is requested... no checking whether JNI cache support is requested... no checking whether headless init is enabled... yes checking whether JRI is requested... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/zzz.R config.status: creating src/config.h === configuring in jri (/sw/build.build/cran-rjava-r31-0.9-6-1/rJava/jri) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local' 'LDFLAGS=-L/sw/lib' 'CPPFLAGS=-I/sw/include' --cache-file=/dev/null --srcdir=. checking build system type... i386-apple-darwin13.3.0 checking host system type... i386-apple-darwin13.3.0 checking for gcc... flag-sort -r gcc -ffor-scope checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether flag-sort -r gcc -ffor-scope accepts -g... yes checking for flag-sort -r gcc -ffor-scope option to accept ISO C89... none needed checking how to run the C preprocessor... flag-sort -r gcc -ffor-scope -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory yes checking whether Java interpreter works... checking whether JNI programs can be compiled... yes checking whether JNI programs can be run... yes checking JNI data types... ok checking whether Rinterface.h exports R_CStackXXX variables... yes checking whether Rinterface.h exports R_SignalHandlers... yes configure: creating ./config.status config.status: creating src/Makefile config.status: creating Makefile config.status: creating run config.status: creating src/config.h ** libs flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I. -I/System/Library/Frameworks/JavaVM.framework/Headers -I/sw/include -fPIC -g -O3 -c Rglue.c -o Rglue.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I. -I/System/Library/Frameworks/JavaVM.framework/Headers -I/sw/include -fPIC -g -O3 -c arrayc.c -o arrayc.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I. -I/System/Library/Frameworks/JavaVM.framework/Headers -I/sw/include -fPIC -g -O3 -c callJNI.c -o callJNI.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I. -I/System/Library/Frameworks/JavaVM.framework/Headers -I/sw/include -fPIC -g -O3 -c callback.c -o callback.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I. -I/System/Library/Frameworks/JavaVM.framework/Headers -I/sw/include -fPIC -g -O3 -c fields.c -o fields.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I. -I/System/Library/Frameworks/JavaVM.framework/Headers -I/sw/include -fPIC -g -O3 -c init.c -o init.o init.c:105:6: warning: 'JNI_GetDefaultJavaVMInitArgs' is deprecated [-Wdeprecated-declarations] if(JNI_GetDefaultJavaVMInitArgs(&vm_args) != JNI_OK) { ^ /System/Library/Frameworks/JavaVM.framework/Headers/jni.h:1934:1: note: 'JNI_GetDefaultJavaVMInitArgs' declared here JNI_GetDefaultJavaVMInitArgs(void *args); ^ init.c:144:9: warning: 'JNI_CreateJavaVM' is deprecated [-Wdeprecated-declarations] res = JNI_CreateJavaVM(&jvm,(void **)&eenv, &vm_args); ^ /System/Library/Frameworks/JavaVM.framework/Headers/jni.h:1937:1: note: 'JNI_CreateJavaVM' declared here JNI_CreateJavaVM(JavaVM **pvm, void **penv, void *args); ^ init.c:310:5: warning: 'JNI_GetCreatedJavaVMs' is deprecated [-Wdeprecated-declarations] r=JNI_GetCreatedJavaVMs(jvms, 32, &vms); ^ /System/Library/Frameworks/JavaVM.framework/Headers/jni.h:1940:1: note: 'JNI_GetCreatedJavaVMs' declared here JNI_GetCreatedJavaVMs(JavaVM **, jsize, jsize *); ^ 3 warnings generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I. -I/System/Library/Frameworks/JavaVM.framework/Headers -I/sw/include -fPIC -g -O3 -c jri_glue.c -o jri_glue.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I. -I/System/Library/Frameworks/JavaVM.framework/Headers -I/sw/include -fPIC -g -O3 -c loader.c -o loader.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I. -I/System/Library/Frameworks/JavaVM.framework/Headers -I/sw/include -fPIC -g -O3 -c otables.c -o otables.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I. -I/System/Library/Frameworks/JavaVM.framework/Headers -I/sw/include -fPIC -g -O3 -c rJava.c -o rJava.o rJava.c:200:15: warning: 'JNI_GetCreatedJavaVMs' is deprecated [-Wdeprecated-declarations] res = JNI_GetCreatedJavaVMs(&jvm, 1, &l); ^ /System/Library/Frameworks/JavaVM.framework/Headers/jni.h:1940:1: note: 'JNI_GetCreatedJavaVMs' declared here JNI_GetCreatedJavaVMs(JavaVM **, jsize, jsize *); ^ 1 warning generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I. -I/System/Library/Frameworks/JavaVM.framework/Headers -I/sw/include -fPIC -g -O3 -c tools.c -o tools.o flag-sort -r gcc -ffor-scope -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib -o rJava.dylib Rglue.o arrayc.o callJNI.o callback.o fields.o init.o jri_glue.o loader.o otables.o rJava.o tools.o -framework JavaVM -L/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation (cd ../jri && make) make -C src JRI.jar /usr/bin/javac -target 1.4 -source 1.4 -d . ../Mutex.java ../RBool.java ../RConsoleOutputStream.java ../REXP.java ../RFactor.java ../RList.java ../RMainLoopCallbacks.java ../RVector.java ../Rengine.java ../package-info.java /usr/bin/javah -d . -classpath . org.rosuda.JRI.Rengine flag-sort -r gcc -ffor-scope -c -o Rengine.o Rengine.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O3 -I/System/Library/Frameworks/JavaVM.framework/Headers -fno-common -I/System/Library/Frameworks/JavaVM.framework/Headers -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include flag-sort -r gcc -ffor-scope -c -o jri.o jri.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O3 -I/System/Library/Frameworks/JavaVM.framework/Headers -fno-common -I/System/Library/Frameworks/JavaVM.framework/Headers -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include flag-sort -r gcc -ffor-scope -c -o Rcallbacks.o Rcallbacks.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O3 -I/System/Library/Frameworks/JavaVM.framework/Headers -fno-common -I/System/Library/Frameworks/JavaVM.framework/Headers -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include Rcallbacks.c:46:14: warning: 'JNI_GetCreatedJavaVMs' is deprecated [-Wdeprecated-declarations] res= JNI_GetCreatedJavaVMs(&jvm, 1, &l); ^ /System/Library/Frameworks/JavaVM.framework/Headers/jni.h:1940:1: note: 'JNI_GetCreatedJavaVMs' declared here JNI_GetCreatedJavaVMs(JavaVM **, jsize, jsize *); ^ 1 warning generated. flag-sort -r gcc -ffor-scope -c -o Rinit.o Rinit.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O3 -I/System/Library/Frameworks/JavaVM.framework/Headers -fno-common -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include flag-sort -r gcc -ffor-scope -c -o globals.o globals.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O3 -I/System/Library/Frameworks/JavaVM.framework/Headers -fno-common -I/System/Library/Frameworks/JavaVM.framework/Headers flag-sort -r gcc -ffor-scope -c -o rjava.o rjava.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O3 -I/System/Library/Frameworks/JavaVM.framework/Headers -fno-common -I/System/Library/Frameworks/JavaVM.framework/Headers flag-sort -r gcc -ffor-scope -o libjri.jnilib Rengine.o jri.o Rcallbacks.o Rinit.o globals.o rjava.o -L/sw/lib -L/sw/lib -dynamiclib -framework JavaVM -L/sw/lib -L/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/lib -lR -lpcre -llzma -lbz2 -lz -lm -liconv -licuuc -licui18n ld: library not found for -licuuc clang: error: linker command failed with exit code 1 (use -v to see invocation) make[2]: *** [libjri.jnilib] Error 1 make[1]: *** [src/JRI.jar] Error 2 make: *** [jri] Error 2 ERROR: compilation failed for package 'rJava' * removing '/sw/build.build/root-cran-rjava-r31-0.9-6-1/sw/lib/R/3.1/site-library/rJava' ### execution of /tmp/fink.hx5EN failed, exit code 1 ### execution of /tmp/fink.UXRt7 failed, exit code 1 Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-rjava-r31-0.9-6-1 (Reading database ... 7372 files and directories currently installed.) Removing fink-buildlock-cran-rjava-r31-0.9-6-1 ... Failed: phase installing: cran-rjava-r31-0.9-6-1 failed Before reporting any errors, please run "fink selfupdate" and try again. Also try using "fink configure" to set your maximum build jobs to 1 and attempt to build the package again. If you continue to have issues, please check to see if the FAQ on Fink's website solves the problem. If not, ask on one (not both, please) of these mailing lists: The Fink Users List The Fink Beginners List , with a carbon copy to the maintainer: Jack Howarth Note that this is preferable to emailing just the maintainer directly, since most fink package maintainers do not have access to all possible hardware and software configurations. Please try to include the complete error message in your report. This generally consists of a compiler line starting with e.g. "gcc" or "g++" followed by the actual error output from the compiler. Also include the following system information: Package manager version: 0.37.0 Distribution version: selfupdate-cvs Thu Jul 24 20:26:24 2014, 10.9, x86_64 Trees: local/main stable/main Xcode.app: 5.1.1 Xcode command-line tools: 6.0.0.0.1.1405597879 Max. Fink build jobs: 8