printf ' ' | fink --no-use-binary-dist --yes rebuild cran-robustbase-r31 2>&1 The package 'cran-robustbase-r31' will be built without being installed. Reading build dependency for cran-robustbase-r31-0.91-0-2... Reading dependency for cran-robustbase-r31-0.91-0-2... Reading build conflict for cran-robustbase-r31-0.91-0-2... The following package will be rebuilt: cran-robustbase-r31 Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-robustbase-r31-0.91-0-2 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-robustbase-r31-0.91-0-2' in `/sw/build.build/fink-buildlock-cran-robustbase-r31-0.91-0-2_2014.07.27-08.55.43_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-robustbase-r31-0.91-0-2_2014.07.27-08.55.43_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-robustbase-r31-0.91-0-2. (Reading database ... 11542 files and directories currently installed.) Unpacking fink-buildlock-cran-robustbase-r31-0.91-0-2 (from .../fink-buildlock-cran-robustbase-r31-0.91-0-2_2014.07.27-08.55.43_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-robustbase-r31-0.91-0-2 (2014.07.27-08.55.43) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.t49eZ env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/robustbase_0.91-0.tar.gz robustbase/ robustbase/TODO robustbase/inst/ robustbase/inst/CITATION robustbase/inst/xtraR/ robustbase/inst/xtraR/test_LTS.R robustbase/inst/xtraR/m-s_fns.R robustbase/inst/xtraR/plot-psiFun.R robustbase/inst/xtraR/ex-funs.R robustbase/inst/xtraR/lmrob-trace_lev.R robustbase/inst/xtraR/mcnaive.R robustbase/inst/xtraR/subsample-fns.R robustbase/inst/xtraR/test_MCD.R robustbase/inst/Copyrights robustbase/inst/doc/ robustbase/inst/doc/estimating.functions.R robustbase/inst/doc/lmrob_simulation.Rnw robustbase/inst/doc/error.distributions.R robustbase/inst/doc/lmrob_simulation.pdf robustbase/inst/doc/psi_functions.Rnw robustbase/inst/doc/lmrob_simulation.R robustbase/inst/doc/psi_functions.R robustbase/inst/doc/simulation.init.R robustbase/inst/doc/graphics.functions.R robustbase/inst/doc/simulation.functions.R robustbase/inst/doc/aggr_results.Rdata robustbase/inst/doc/asymptotic.max.bias.Rdata robustbase/inst/doc/psi_functions.pdf robustbase/inst/external/ robustbase/inst/external/d1k27.rda robustbase/tests/ robustbase/tests/MT-tst.R robustbase/tests/lmrob-psifns.R robustbase/tests/small-sample.R robustbase/tests/weights.Rout.save robustbase/tests/Rsquared.Rout.save robustbase/tests/glmrob-specials.R robustbase/tests/Rsquared.R robustbase/tests/tmcd.R robustbase/tests/binom-no-x.R robustbase/tests/small-sample.Rout.save robustbase/tests/exact-fit-categorical.R robustbase/tests/wgt-himed-xtra.R robustbase/tests/OGK-ex.Rout.save robustbase/tests/lmrob-data.Rout.save robustbase/tests/lmrob-methods.R robustbase/tests/NAcoef.Rout.save robustbase/tests/lmrob-ex12.R robustbase/tests/plot-ex.R robustbase/tests/huber-etc.R robustbase/tests/poisson-ex.R robustbase/tests/glmrob-1.R robustbase/tests/m-s-estimator.R robustbase/tests/nlrob-tst.R robustbase/tests/LTS-specials.R robustbase/tests/MCD-specials.R robustbase/tests/weights.R robustbase/tests/mc-strict.R robustbase/tests/lmrob-psifns.Rout.save robustbase/tests/tlts.Rout.save robustbase/tests/lmrob-data.R robustbase/tests/subsample.R robustbase/tests/binom-ni-small.R robustbase/tests/lmrob-methods.Rout.save robustbase/tests/binom-ni-small.Rout.save robustbase/tests/mc-etc.R robustbase/tests/psi-rho-etc.R robustbase/tests/NAcoef.R robustbase/tests/tlts.R robustbase/tests/tmcd.Rout.save robustbase/tests/huber-etc.Rout.save robustbase/tests/OGK-ex.R robustbase/tests/wgt-himed.Rout.save robustbase/tests/nlregrob-tst.R robustbase/tests/MCD-specials.Rout.save robustbase/tests/wgt-himed.R robustbase/tests/psi-rho-etc.Rout.save robustbase/src/ robustbase/src/Makevars robustbase/src/rllarsbi.f robustbase/src/R-rng4ftn.c robustbase/src/wgt_himed.c robustbase/src/wgt_himed_templ.h robustbase/src/mc.c robustbase/src/rfltsreg.f robustbase/src/eigen.f robustbase/src/lmrob.c robustbase/src/init.c robustbase/src/rffastmcd.f robustbase/src/rf-common.f robustbase/src/robustbase.h robustbase/src/qn_sn.c robustbase/NAMESPACE robustbase/data/ robustbase/data/radarImage.rda robustbase/data/Animals2.rda robustbase/data/cloud.rda robustbase/data/education.rda robustbase/data/milk.rda robustbase/data/epilepsy.rda robustbase/data/alcohol.rda robustbase/data/vaso.rda robustbase/data/CrohnD.rda robustbase/data/wood.rda robustbase/data/condroz.rda robustbase/data/delivery.rda robustbase/data/hbk.rda robustbase/data/kootenay.tab robustbase/data/pension.rda robustbase/data/los.rda robustbase/data/airmay.rda robustbase/data/pilot.rda robustbase/data/coleman.rda robustbase/data/telef.rda robustbase/data/SiegelsEx.R robustbase/data/possumDiv.rda robustbase/data/lactic.rda robustbase/data/pulpfiber.rda robustbase/data/aircraft.rda robustbase/data/Animals2.tab robustbase/data/cushny.R robustbase/data/carrots.rda robustbase/data/foodstamp.rda robustbase/data/phosphor.rda robustbase/data/toxicity.rda robustbase/data/salinity.rda robustbase/data/exAM.tab robustbase/data/NOxEmissions.rda robustbase/data/heart.rda robustbase/data/wagnerGrowth.rda robustbase/data/starsCYG.rda robustbase/data/ambientNOxCH.rda robustbase/data/bushfire.rda robustbase/R/ robustbase/R/glmrob.R robustbase/R/adjbox.R robustbase/R/BYlogreg.R robustbase/R/anova-glmrob.R robustbase/R/MTestimador2.R robustbase/R/covPlot.R robustbase/R/ltsReg.R robustbase/R/huber.R robustbase/R/plot.lmrob.R robustbase/R/nlregrob.R robustbase/R/qnsn.R robustbase/R/tolEllipse.R robustbase/R/OGK.R robustbase/R/lmrob.M.S.R robustbase/R/anova.lmrob.R robustbase/R/psi-rho-funs.R robustbase/R/rrcov.control.R robustbase/R/adjoutlyingness.R robustbase/R/nlrob.R robustbase/R/lmrob.MM.R robustbase/R/lmrobPredict.R robustbase/R/ltsPlot.R robustbase/R/lmrob.R robustbase/R/glmrobMqle-DQD.R robustbase/R/glmrobMqle.R robustbase/R/mc.R robustbase/R/biweight-funs.R robustbase/R/covMcd.R robustbase/R/glmrobPredict.R robustbase/R/AAA.R robustbase/vignettes/ robustbase/vignettes/plot-fig-sdAdB2-1.pdf robustbase/vignettes/psi-GGW.pdf robustbase/vignettes/lmrob_simulation.Rnw robustbase/vignettes/psi-bisquare.pdf robustbase/vignettes/plot-fig-sdscale-1.pdf robustbase/vignettes/plot-fig-qscale.pdf robustbase/vignettes/plot-fig-qscale-all.pdf robustbase/vignettes/plot-fig-power-1-0_6.pdf robustbase/vignettes/plot-fig-pred-points.pdf robustbase/vignettes/psi_functions.Rnw robustbase/vignettes/plot-fig-lqq-level.pdf robustbase/vignettes/psi-LQQ.pdf robustbase/vignettes/plot-fig-AdB2-1.pdf robustbase/vignettes/plot-fig-power-1-0_2.pdf robustbase/vignettes/plot-fig-efficiency-all.pdf robustbase/vignettes/plot-fig-sdscale-all.pdf robustbase/vignettes/plot-fig-power-1-1.pdf robustbase/vignettes/plot-fig-meanscale.pdf robustbase/vignettes/plot-fig-cpr.pdf robustbase/vignettes/lmrob_simulation.bib robustbase/vignettes/plot-fig-Mscale-all.pdf robustbase/vignettes/plot-fig-emp-level.pdf robustbase/vignettes/plot-fig-power-1-0_4.pdf robustbase/vignettes/plot-fig-psi-functions.pdf robustbase/vignettes/plot-fig-efficiency.pdf robustbase/vignettes/plot-fig-example-design.pdf robustbase/vignettes/plot-fig-Mscale.pdf robustbase/vignettes/psi-optimal.pdf robustbase/vignettes/psi-Welsh.pdf robustbase/vignettes/plot-fig-max-asymptotic-bias.pdf robustbase/vignettes/plot-fig-power-1-0_8.pdf robustbase/vignettes/psi-Hampel.pdf robustbase/vignettes/psi-Huber.pdf robustbase/MD5 robustbase/build/ robustbase/build/vignette.rds robustbase/DESCRIPTION robustbase/ChangeLog robustbase/man/ robustbase/man/lmrob.control.Rd robustbase/man/SiegelsEx.Rd robustbase/man/summary.glmrob.Rd robustbase/man/CrohnD.Rd robustbase/man/delivery.Rd robustbase/man/huberM.Rd robustbase/man/summary.lts.Rd robustbase/man/estimethod.Rd robustbase/man/Sn.Rd robustbase/man/mc.Rd robustbase/man/pulpfiber.Rd robustbase/man/Qn.Rd robustbase/man/plot-methods.Rd robustbase/man/cushny.Rd robustbase/man/ltsPlot.Rd robustbase/man/starsCYG.Rd robustbase/man/tukeyPsi1.Rd robustbase/man/lmrob.Rd robustbase/man/toxicity.Rd robustbase/man/milk.Rd robustbase/man/h.alpha.n.Rd robustbase/man/Animals2.Rd robustbase/man/lmrob..D..fit.Rd robustbase/man/lmrob.lar.Rd robustbase/man/phosphor.Rd robustbase/man/glmrob.control.Rd robustbase/man/possumDiv.Rd robustbase/man/carrots.Rd robustbase/man/epilepsy.Rd robustbase/man/salinity.Rd robustbase/man/summarizeRobWeights.Rd robustbase/man/M.psi.Rd robustbase/man/scaleTau2.Rd robustbase/man/ltsReg.Rd robustbase/man/pension.Rd robustbase/man/adjbox.Rd robustbase/man/condroz.Rd robustbase/man/covMcd.Rd robustbase/man/cloud.Rd robustbase/man/exAM.Rd robustbase/man/adjOutlyingness.Rd robustbase/man/lmrob.S.Rd robustbase/man/anova.lmrob.Rd robustbase/man/glmrob.Rd robustbase/man/lmrob.fit.Rd robustbase/man/BYlogreg.Rd robustbase/man/predict.lmrob.Rd robustbase/man/psi_func-class.Rd robustbase/man/hbk.Rd robustbase/man/chgDefaults-methods.Rd robustbase/man/aircraft.Rd robustbase/man/education.Rd robustbase/man/adjboxStats.Rd robustbase/man/pkg-internal.Rd robustbase/man/ambientNOxCH.Rd robustbase/man/kootenay.Rd robustbase/man/psiFunc.Rd robustbase/man/nlrob.control.Rd robustbase/man/nlrob.Rd robustbase/man/wagnerGrowth.Rd robustbase/man/lactic.Rd robustbase/man/plot.lmrob.Rd robustbase/man/wgt.himedian.Rd robustbase/man/splitFrame.Rd robustbase/man/pilot.Rd robustbase/man/vaso.Rd robustbase/man/lmrob..M..fit.Rd robustbase/man/airmay.Rd robustbase/man/los.Rd robustbase/man/functionXal-class.Rd robustbase/man/rrcov.control.Rd robustbase/man/telef.Rd robustbase/man/residuals.glmrob.Rd robustbase/man/nlrob-algos.Rd robustbase/man/NOxEmissions.Rd robustbase/man/tolEllipsePlot.Rd robustbase/man/covPlot.Rd robustbase/man/print.lmrob.Rd robustbase/man/functionX-class.Rd robustbase/man/predict.glmrob.Rd robustbase/man/summary.lmrob.Rd robustbase/man/radarImage.Rd robustbase/man/anova.glmrob.Rd robustbase/man/foodstamp.Rd robustbase/man/coleman.Rd robustbase/man/sigma.Rd robustbase/man/lmrob.M.S.Rd robustbase/man/bushfire.Rd robustbase/man/weights.lmrob.Rd robustbase/man/wood.Rd robustbase/man/summary.nlrob.Rd robustbase/man/covOGK.Rd robustbase/man/heart.Rd robustbase/man/alcohol.Rd robustbase/man/summary.mcd.Rd robustbase/.Rinstignore sudo -u fink-bld [ENV] sh -c /tmp/fink.tMnS7 /tmp/fink.uiOCO #!/bin/sh -ev export TMPDIR=/sw/build.build/cran-robustbase-r31-0.91-0-2/robustbase/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R pushd .. /sw/build.build/cran-robustbase-r31-0.91-0-2 /sw/build.build/cran-robustbase-r31-0.91-0-2/robustbase if [[ 3.1 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes robustbase else $BIN_R --verbose CMD build --no-vignettes robustbase fi * checking for file 'robustbase/DESCRIPTION' ... OK * preparing 'robustbase': * checking DESCRIPTION meta-information ... OK * cleaning src * checking vignette meta-information ... OK * checking for LF line-endings in source and make files * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added * re-saving .R files as .rda NB: *.R converted to .rda: other files may need to be removed * re-saving tabular files * re-saving image files * building 'robustbase_0.91-0.tar.gz' /bin/rm -rf /sw/build.build/root-cran-robustbase-r31-0.91-0-2 /bin/mkdir -p /sw/build.build/root-cran-robustbase-r31-0.91-0-2/sw /bin/mkdir -p /sw/build.build/root-cran-robustbase-r31-0.91-0-2/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-robustbase-r31-0.91-0-2 sudo -u fink-bld [ENV] sh -c /tmp/fink.P1pi3 /tmp/fink.QKyu2 #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R mkdir -p /sw/build.build/root-cran-robustbase-r31-0.91-0-2/sw/lib/R/3.1/site-library pushd /sw/build.build/cran-robustbase-r31-0.91-0-2/robustbase/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-robustbase-r31-0.91-0-2/sw/lib/R/3.1/site-library robustbase /sw/build.build/cran-robustbase-r31-0.91-0-2 /sw/build.build/cran-robustbase-r31-0.91-0-2/robustbase * installing *source* package 'robustbase' ... ** package 'robustbase' successfully unpacked and MD5 sums checked ** libs flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c R-rng4ftn.c -o R-rng4ftn.o /sw/bin/gfortran-fsf-4.9 -fPIC -g -O3 -c eigen.f -o eigen.o make: /sw/bin/gfortran-fsf-4.9: No such file or directory make: *** [eigen.o] Error 1 ERROR: compilation failed for package 'robustbase' * removing '/sw/build.build/root-cran-robustbase-r31-0.91-0-2/sw/lib/R/3.1/site-library/robustbase' ### execution of /tmp/fink.QKyu2 failed, exit code 1 ### execution of /tmp/fink.P1pi3 failed, exit code 1 Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-robustbase-r31-0.91-0-2 (Reading database ... 11543 files and directories currently installed.) Removing fink-buildlock-cran-robustbase-r31-0.91-0-2 ... Failed: phase installing: cran-robustbase-r31-0.91-0-2 failed Before reporting any errors, please run "fink selfupdate" and try again. Also try using "fink configure" to set your maximum build jobs to 1 and attempt to build the package again. If you continue to have issues, please check to see if the FAQ on Fink's website solves the problem. If not, ask on one (not both, please) of these mailing lists: The Fink Users List The Fink Beginners List , with a carbon copy to the maintainer: David Fang Note that this is preferable to emailing just the maintainer directly, since most fink package maintainers do not have access to all possible hardware and software configurations. Please try to include the complete error message in your report. This generally consists of a compiler line starting with e.g. "gcc" or "g++" followed by the actual error output from the compiler. Also include the following system information: Package manager version: 0.37.0 Distribution version: selfupdate-cvs Thu Jul 24 20:26:24 2014, 10.9, x86_64 Trees: local/main stable/main Xcode.app: 5.1.1 Xcode command-line tools: 6.0.0.0.1.1405597879 Max. Fink build jobs: 8