printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-rpart-r215 2>&1 The package 'cran-rpart-r215' will be built without being installed. Reading build dependency for cran-rpart-r215-4.1-8-2... Reading dependency for cran-rpart-r215-4.1-8-2... Reading build conflict for cran-rpart-r215-4.1-8-2... The following package will be rebuilt: cran-rpart-r215 Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-rpart-r215-4.1-8-2 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-rpart-r215-4.1-8-2' in `/sw/build.build/fink-buildlock-cran-rpart-r215-4.1-8-2_2014.08.01-05.04.41_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-rpart-r215-4.1-8-2_2014.08.01-05.04.41_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-rpart-r215-4.1-8-2. (Reading database ... 7557 files and directories currently installed.) Unpacking fink-buildlock-cran-rpart-r215-4.1-8-2 (from .../fink-buildlock-cran-rpart-r215-4.1-8-2_2014.08.01-05.04.41_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-rpart-r215-4.1-8-2 (2014.08.01-05.04.41) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.f07dU env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/rpart_4.1-8.tar.gz rpart/ rpart/po/ rpart/po/R-fr.po rpart/po/de.po rpart/po/pl.po rpart/po/ru.po rpart/po/R-de.po rpart/po/rpart.pot rpart/po/fr.po rpart/po/ko.po rpart/po/R-pl.po rpart/po/R-ko.po rpart/po/R-ru.po rpart/po/R-rpart.pot rpart/inst/ rpart/inst/po/ rpart/inst/po/pl/ rpart/inst/po/pl/LC_MESSAGES/ rpart/inst/po/pl/LC_MESSAGES/rpart.mo rpart/inst/po/pl/LC_MESSAGES/R-rpart.mo rpart/inst/po/en@quot/ rpart/inst/po/en@quot/LC_MESSAGES/ rpart/inst/po/en@quot/LC_MESSAGES/rpart.mo rpart/inst/po/en@quot/LC_MESSAGES/R-rpart.mo rpart/inst/po/ko/ rpart/inst/po/ko/LC_MESSAGES/ rpart/inst/po/ko/LC_MESSAGES/rpart.mo rpart/inst/po/ko/LC_MESSAGES/R-rpart.mo rpart/inst/po/fr/ rpart/inst/po/fr/LC_MESSAGES/ rpart/inst/po/fr/LC_MESSAGES/rpart.mo rpart/inst/po/fr/LC_MESSAGES/R-rpart.mo rpart/inst/po/de/ rpart/inst/po/de/LC_MESSAGES/ rpart/inst/po/de/LC_MESSAGES/rpart.mo rpart/inst/po/de/LC_MESSAGES/R-rpart.mo rpart/inst/po/ru/ rpart/inst/po/ru/LC_MESSAGES/ rpart/inst/po/ru/LC_MESSAGES/rpart.mo rpart/inst/po/ru/LC_MESSAGES/R-rpart.mo rpart/inst/NEWS.Rd rpart/inst/doc/ rpart/inst/doc/longintro.R rpart/inst/doc/usercode.pdf rpart/inst/doc/longintro.pdf rpart/inst/doc/longintro.Rnw rpart/inst/doc/usercode.Rnw rpart/inst/doc/usercode.R rpart/tests/ rpart/tests/data.stagec rpart/tests/treble4.R rpart/tests/testall.R rpart/tests/cost.Rout.save rpart/tests/priors.Rout.save rpart/tests/backticks.Rout.save rpart/tests/xpred2.R rpart/tests/xpred1.R rpart/tests/xpred2.Rout.save rpart/tests/cost.R rpart/tests/testall.Rout.save rpart/tests/priors.R rpart/tests/Examples/ rpart/tests/Examples/rpart-Ex.Rout.save rpart/tests/xpred1.Rout.save rpart/tests/usersplits.R rpart/tests/treble.Rout.save rpart/tests/usersplits.Rout.save rpart/tests/rescale.R rpart/tests/treble4.Rout.save rpart/tests/treble3.Rout.save rpart/tests/treble2.R rpart/tests/treble3.R rpart/tests/rescale.Rout.save rpart/tests/treble2.Rout.save rpart/tests/cptest.R rpart/tests/cptest.Rout.save rpart/tests/backticks.R rpart/tests/treble.R rpart/src/ rpart/src/rpart_callback.c rpart/src/poisson.c rpart/src/xval.c rpart/src/node.h rpart/src/branch.c rpart/src/graycode.c rpart/src/rundown2.c rpart/src/xpred.c rpart/src/rpart.c rpart/src/mysort.c rpart/src/gini.c rpart/src/bsplit.c rpart/src/rpartexp.c rpart/src/print_tree.c rpart/src/insert_split.c rpart/src/rpart.h rpart/src/rpartexp2.c rpart/src/pred_rpart.c rpart/src/rundown.c rpart/src/usersplit.c rpart/src/rpmatrix.c rpart/src/nodesplit.c rpart/src/surrogate.c rpart/src/anovapred.c rpart/src/fix_cp.c rpart/src/make_cp_table.c rpart/src/init.c rpart/src/free_tree.c rpart/src/rpcountup.c rpart/src/choose_surg.c rpart/src/partition.c rpart/src/func_table.h rpart/src/make_cp_list.c rpart/src/rpartproto.h rpart/src/anova.c rpart/NAMESPACE rpart/data/ rpart/data/car.test.frame.csv.gz rpart/data/cu.summary.rda rpart/data/car90.rda rpart/data/stagec.rda rpart/data/kyphosis.tab.gz rpart/data/solder.tab.gz rpart/PORTING rpart/R/ rpart/R/post.R rpart/R/rpart.R rpart/R/meanvar.rpart.R rpart/R/snip.rpart.mouse.R rpart/R/rpart.exp.R rpart/R/rpart.control.R rpart/R/plotcp.R rpart/R/path.rpart.R rpart/R/snip.rpart.R rpart/R/plot.rpart.R rpart/R/roc.rpart.R rpart/R/prune.rpart.R rpart/R/rpart.branch.R rpart/R/predict.rpart.R rpart/R/labels.rpart.R rpart/R/model.frame.rpart.R rpart/R/rsq.rpart.R rpart/R/na.rpart.R rpart/R/residuals.rpart.R rpart/R/xpred.rpart.R rpart/R/rpart.anova.R rpart/R/rpartcallback.R rpart/R/post.rpart.R rpart/R/formatg.R rpart/R/summary.rpart.R rpart/R/printcp.R rpart/R/print.rpart.R rpart/R/rpartco.R rpart/R/prune.R rpart/R/pred.rpart.R rpart/R/text.rpart.R rpart/R/importance.R rpart/R/rpart.class.R rpart/R/zzz.R rpart/R/rpart.poisson.R rpart/R/rpart.matrix.R rpart/vignettes/ rpart/vignettes/refer.bib rpart/vignettes/longintro.Rnw rpart/vignettes/usercode.Rnw rpart/MD5 rpart/build/ rpart/build/vignette.rds rpart/DESCRIPTION rpart/ChangeLog rpart/Changelog.TMT rpart/man/ rpart/man/cu.summary.Rd rpart/man/kyphosis.Rd rpart/man/na.rpart.Rd rpart/man/meanvar.rpart.Rd rpart/man/post.rpart.Rd rpart/man/car90.Rd rpart/man/labels.rpart.Rd rpart/man/prune.rpart.Rd rpart/man/xpred.rpart.Rd rpart/man/car.test.frame.Rd rpart/man/rsq.rpart.Rd rpart/man/snip.rpart.Rd rpart/man/solder.Rd rpart/man/summary.rpart.Rd rpart/man/rpart.exp.Rd rpart/man/printcp.Rd rpart/man/rpart.Rd rpart/man/rpart.object.Rd rpart/man/rpart-internal.Rd rpart/man/residuals.rpart.Rd rpart/man/text.rpart.Rd rpart/man/plotcp.Rd rpart/man/rpart.control.Rd rpart/man/predict.rpart.Rd rpart/man/print.rpart.Rd rpart/man/plot.rpart.Rd rpart/man/stagec.Rd rpart/man/path.rpart.Rd sudo -u fink-bld [ENV] sh -c /tmp/fink.EStgP /tmp/fink.BKGNf #!/bin/sh -ev export TMPDIR=/sw/build.build/cran-rpart-r215-4.1-8-2/rpart/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R pushd .. /sw/build.build/cran-rpart-r215-4.1-8-2 /sw/build.build/cran-rpart-r215-4.1-8-2/rpart if [[ 2.15 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes rpart else $BIN_R --verbose CMD build --no-vignettes rpart fi * checking for file 'rpart/DESCRIPTION' ... OK * preparing 'rpart': * checking DESCRIPTION meta-information ... OK * cleaning src * checking for LF line-endings in source and make files * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added * building 'rpart_4.1-8.tar.gz' /bin/rm -rf /sw/build.build/root-cran-rpart-r215-4.1-8-2 /bin/mkdir -p /sw/build.build/root-cran-rpart-r215-4.1-8-2/sw /bin/mkdir -p /sw/build.build/root-cran-rpart-r215-4.1-8-2/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-rpart-r215-4.1-8-2 sudo -u fink-bld [ENV] sh -c /tmp/fink.jOd4y /tmp/fink.kfSGH #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R mkdir -p /sw/build.build/root-cran-rpart-r215-4.1-8-2/sw/lib/R/2.15/site-library pushd /sw/build.build/cran-rpart-r215-4.1-8-2/rpart/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-rpart-r215-4.1-8-2/sw/lib/R/2.15/site-library rpart /sw/build.build/cran-rpart-r215-4.1-8-2 /sw/build.build/cran-rpart-r215-4.1-8-2/rpart * installing *source* package 'rpart' ... ** package 'rpart' successfully unpacked and MD5 sums checked ** libs flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c anova.c -o anova.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c anovapred.c -o anovapred.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c branch.c -o branch.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c bsplit.c -o bsplit.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c choose_surg.c -o choose_surg.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c fix_cp.c -o fix_cp.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c free_tree.c -o free_tree.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c gini.c -o gini.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c graycode.c -o graycode.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c init.c -o init.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c insert_split.c -o insert_split.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c make_cp_list.c -o make_cp_list.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c make_cp_table.c -o make_cp_table.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c mysort.c -o mysort.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c nodesplit.c -o nodesplit.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c partition.c -o partition.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c poisson.c -o poisson.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c pred_rpart.c -o pred_rpart.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c print_tree.c -o print_tree.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c rpart.c -o rpart.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c rpart_callback.c -o rpart_callback.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c rpartexp.c -o rpartexp.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c rpartexp2.c -o rpartexp2.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c rpcountup.c -o rpcountup.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c rpmatrix.c -o rpmatrix.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c rundown.c -o rundown.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c rundown2.c -o rundown2.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c surrogate.c -o surrogate.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c usersplit.c -o usersplit.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c xpred.c -o xpred.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c xval.c -o xval.o flag-sort -r gcc -ffor-scope -dynamiclib -Wl,-headerpad_max_install_names -single_module -multiply_defined suppress -L/sw/lib -o rpart.dylib anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation installing to /sw/build.build/root-cran-rpart-r215-4.1-8-2/sw/lib/R/2.15/site-library/rpart/libs ** R ** data ** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes 'longintro.Rnw' 'usercode.Rnw' ** testing if installed package can be loaded * DONE (rpart) install_name_tool -id /sw/lib/R/2.15/site-library/rpart/libs/rpart.dylib /sw/build.build/root-cran-rpart-r215-4.1-8-2/sw/lib/R/2.15/site-library/rpart/libs/rpart.dylib sudo -u fink-bld [ENV] sh -c /tmp/fink.NZqHq /bin/rm -f /sw/build.build/root-cran-rpart-r215-4.1-8-2/sw/info/dir /sw/build.build/root-cran-rpart-r215-4.1-8-2/sw/info/dir.old /sw/build.build/root-cran-rpart-r215-4.1-8-2/sw/share/info/dir /sw/build.build/root-cran-rpart-r215-4.1-8-2/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-rpart-r215-4.1-8-2 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-rpart-r215' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-rpart-r215_4.1-8-2_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-rpart-r215-4.1-8-2 (Reading database ... 7558 files and directories currently installed.) Removing fink-buildlock-cran-rpart-r215-4.1-8-2 ...