printf '

' | fink --no-use-binary-dist --yes  --build-as-nobody rebuild cran-rpubchem-r215 2>&1
The package 'cran-rpubchem-r215' will be built without being installed.
Reading build dependency for cran-rpubchem-r215-1.5.0.2-1...
Reading dependency for cran-rpubchem-r215-1.5.0.2-1...
Reading build conflict for cran-rpubchem-r215-1.5.0.2-1...
The package 'r-base215-dev' will be installed.
Reading dependency for r-base215-dev-2.15.3-112...
Reading runtime dependency for r-base215-dev-2.15.3-112...
The package 'r-base215' will be installed.
Reading dependency for r-base215-2.15.3-112...
Reading runtime dependency for r-base215-2.15.3-112...
The package 'cran-car-r215' will be installed.
Reading dependency for cran-car-r215-2.0-20-1...
Reading runtime dependency for cran-car-r215-2.0-20-1...
The package 'cran-rcurl-r215' will be installed.
Reading dependency for cran-rcurl-r215-0.9-4-1...
Reading runtime dependency for cran-rcurl-r215-0.9-4-1...
The package 'cran-rjsonio-r215' will be installed.
Reading dependency for cran-rjsonio-r215-1.2-0.2-1...
Reading runtime dependency for cran-rjsonio-r215-1.2-0.2-1...
The package 'cran-xml-r215' will be installed.
Reading dependency for cran-xml-r215-3.98-1.1-1...
Reading runtime dependency for cran-xml-r215-3.98-1.1-1...
The package 'r-base215-shlibs' will be installed.
Reading dependency for r-base215-shlibs-2.15.3-112...
Reading runtime dependency for r-base215-shlibs-2.15.3-112...
The package 'flag-sort' will be installed.
Reading dependency for flag-sort-0.5-1...
Reading runtime dependency for flag-sort-0.5-1...
The package 'cran-mass-r215' will be installed.
Reading dependency for cran-mass-r215-7.3-23-2...
Reading runtime dependency for cran-mass-r215-7.3-23-2...
The package 'cran-nnet-r215' will be installed.
Reading dependency for cran-nnet-r215-7.3-8-2...
Reading runtime dependency for cran-nnet-r215-7.3-8-2...
The package 'libcurl4-shlibs' will be installed.
Reading dependency for libcurl4-shlibs-7.37.1-1+10.8...
Reading runtime dependency for libcurl4-shlibs-7.37.1-1+10.8...
The package 'libxml2-shlibs' will be installed.
Reading dependency for libxml2-shlibs-2.9.1-3...
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The package 'cran-bitops-r215' will be installed.
Reading dependency for cran-bitops-r215-1.0-6-2...
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The package 'cairo-shlibs' will be installed.
Reading dependency for cairo-shlibs-1.12.14-1...
Reading runtime dependency for cairo-shlibs-1.12.14-1...
The package 'gcc49-shlibs' will be installed.
Reading dependency for gcc49-shlibs-4.9.1-1000...
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The package 'glib2-shlibs' will be installed.
Reading dependency for glib2-shlibs-2.22.4-8...
Reading runtime dependency for glib2-shlibs-2.22.4-8...
The package 'libicu48-shlibs' will be installed.
Reading dependency for libicu48-shlibs-4.8.1.1-2...
Reading runtime dependency for libicu48-shlibs-4.8.1.1-2...
The package 'libjpeg9-shlibs' will be installed.
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The package 'liblzma5-shlibs' will be installed.
Reading dependency for liblzma5-shlibs-5.0.5-2...
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The package 'libpng16-shlibs' will be installed.
Reading dependency for libpng16-shlibs-1.6.12-1...
Reading runtime dependency for libpng16-shlibs-1.6.12-1...
The package 'libtiff5-shlibs' will be installed.
Reading dependency for libtiff5-shlibs-4.0.3-5...
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The package 'pango1-xft2-ft219-shlibs' will be installed.
Reading dependency for pango1-xft2-ft219-shlibs-1.24.5-9...
Reading runtime dependency for pango1-xft2-ft219-shlibs-1.24.5-9...
The package 'libpcre1-shlibs' will be installed.
Reading dependency for libpcre1-shlibs-8.35-1...
Reading runtime dependency for libpcre1-shlibs-8.35-1...
The package 'readline6-shlibs' will be installed.
Reading dependency for readline6-shlibs-6.3.6-1...
Reading runtime dependency for readline6-shlibs-6.3.6-1...
The package 'tcltk' will be installed.
Reading dependency for tcltk-8.6.1-104...
Reading runtime dependency for tcltk-8.6.1-104...
The package 'librtmp-shlibs' will be installed.
Reading dependency for librtmp-shlibs-2.3-4...
Reading runtime dependency for librtmp-shlibs-2.3-4...
The package 'libssh2.1-shlibs' will be installed.
Reading dependency for libssh2.1-shlibs-1.4.3-1...
Reading runtime dependency for libssh2.1-shlibs-1.4.3-1...
The package 'fontconfig2-shlibs' will be installed.
Reading dependency for fontconfig2-shlibs-2.10.2-1...
Reading runtime dependency for fontconfig2-shlibs-2.10.2-1...
The package 'freetype219-shlibs' will be installed.
Reading dependency for freetype219-shlibs-2.4.12-1...
Reading runtime dependency for freetype219-shlibs-2.4.12-1...
The package 'pixman-shlibs' will be installed.
Reading dependency for pixman-shlibs-0.32.4-1...
Reading runtime dependency for pixman-shlibs-0.32.4-1...
The package 'xdg-base' will be installed.
Reading dependency for xdg-base-0.8-2...
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The package 'libjbig-shlibs' will be installed.
Reading dependency for libjbig-shlibs-2.0-1...
Reading runtime dependency for libjbig-shlibs-2.0-1...
The package 'libthai-shlibs' will be installed.
Reading dependency for libthai-shlibs-0.1.20-1...
Reading runtime dependency for libthai-shlibs-0.1.20-1...
The package 'xft2-shlibs' will be installed.
Reading dependency for xft2-shlibs-2.2.0-3...
Reading runtime dependency for xft2-shlibs-2.2.0-3...
The package 'tcltk-shlibs' will be installed.
Reading dependency for tcltk-shlibs-8.6.1-104...
Reading runtime dependency for tcltk-shlibs-8.6.1-104...
The package 'openssl100-shlibs' will be installed.
Reading dependency for openssl100-shlibs-1.0.1h-1...
Reading runtime dependency for openssl100-shlibs-1.0.1h-1...
The package 'fontconfig-config' will be installed.
Reading dependency for fontconfig-config-2.10.2-1...
Reading runtime dependency for fontconfig-config-2.10.2-1...
The package 'expat1-shlibs' will be installed.
Reading dependency for expat1-shlibs-2.1.0-1...
Reading runtime dependency for expat1-shlibs-2.1.0-1...
The package 'libdatrie1-shlibs' will be installed.
Reading dependency for libdatrie1-shlibs-0.2.8-2...
Reading runtime dependency for libdatrie1-shlibs-0.2.8-2...
The package 'libthai' will be installed.
Reading dependency for libthai-0.1.20-1...
Reading runtime dependency for libthai-0.1.20-1...
The following package will be rebuilt:
 cran-rpubchem-r215
The following 40 additional packages will be installed:
 cairo-shlibs cran-bitops-r215 cran-car-r215 cran-mass-r215 cran-nnet-r215
 cran-rcurl-r215 cran-rjsonio-r215 cran-xml-r215 expat1-shlibs flag-sort
 fontconfig-config fontconfig2-shlibs freetype219-shlibs gcc49-shlibs
 glib2-shlibs libcurl4-shlibs libdatrie1-shlibs libicu48-shlibs
 libjbig-shlibs libjpeg9-shlibs liblzma5-shlibs libpcre1-shlibs
 libpng16-shlibs librtmp-shlibs libssh2.1-shlibs libthai libthai-shlibs
 libtiff5-shlibs libxml2-shlibs openssl100-shlibs pango1-xft2-ft219-shlibs
 pixman-shlibs r-base215 r-base215-dev r-base215-shlibs readline6-shlibs
 tcltk tcltk-shlibs xdg-base xft2-shlibs
Do you want to continue? [Y/n] (assuming default)
curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/rpubchem_1.5.0.2.tar.gz
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                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  9233  100  9233    0     0  32785      0 --:--:-- --:--:-- --:--:-- 32857
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Selecting previously deselected package expat1-shlibs.
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Unpacking expat1-shlibs (from .../expat1-shlibs_2.1.0-1_darwin-x86_64.deb) ...
Setting up expat1-shlibs (2.1.0-1) ...

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/sw/bin/dpkg-lockwait -i /sw/fink/debs/flag-sort_0.5-1_darwin-x86_64.deb
Selecting previously deselected package flag-sort.
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/freetype219-shlibs_2.4.12-1_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/gcc49-shlibs_4.9.1-1000_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libdatrie1-shlibs_0.2.8-2_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libicu48-shlibs_4.8.1.1-2_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjbig-shlibs_2.0-1_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjpeg9-shlibs_9a-1_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/utils/liblzma5-shlibs_5.0.5-2_darwin-x86_64.deb
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Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/debs/cran-bitops-r215_1.0-6-2_darwin-x86_64.deb
Selecting previously deselected package cran-bitops-r215.
(Reading database ... 7515 files and directories currently installed.)
Unpacking cran-bitops-r215 (from .../cran-bitops-r215_1.0-6-2_darwin-x86_64.deb) ...
Setting up cran-bitops-r215 (1.0-6-2) ...

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/debs/cran-mass-r215_7.3-23-2_darwin-x86_64.deb
Selecting previously deselected package cran-mass-r215.
(Reading database ... 7543 files and directories currently installed.)
Unpacking cran-mass-r215 (from .../cran-mass-r215_7.3-23-2_darwin-x86_64.deb) ...
Setting up cran-mass-r215 (7.3-23-2) ...

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/debs/cran-nnet-r215_7.3-8-2_darwin-x86_64.deb
Selecting previously deselected package cran-nnet-r215.
(Reading database ... 7606 files and directories currently installed.)
Unpacking cran-nnet-r215 (from .../cran-nnet-r215_7.3-8-2_darwin-x86_64.deb) ...
Setting up cran-nnet-r215 (7.3-8-2) ...

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/debs/cran-rcurl-r215_0.9-4-1_darwin-x86_64.deb
Selecting previously deselected package cran-rcurl-r215.
(Reading database ... 7649 files and directories currently installed.)
Unpacking cran-rcurl-r215 (from .../cran-rcurl-r215_0.9-4-1_darwin-x86_64.deb) ...
Setting up cran-rcurl-r215 (0.9-4-1) ...

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/debs/cran-rjsonio-r215_1.2-0.2-1_darwin-x86_64.deb
Selecting previously deselected package cran-rjsonio-r215.
(Reading database ... 7718 files and directories currently installed.)
Unpacking cran-rjsonio-r215 (from .../cran-rjsonio-r215_1.2-0.2-1_darwin-x86_64.deb) ...
Setting up cran-rjsonio-r215 (1.2-0.2-1) ...

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/debs/cran-xml-r215_3.98-1.1-1_darwin-x86_64.deb
Selecting previously deselected package cran-xml-r215.
(Reading database ... 7778 files and directories currently installed.)
Unpacking cran-xml-r215 (from .../cran-xml-r215_3.98-1.1-1_darwin-x86_64.deb) ...
Setting up cran-xml-r215 (3.98-1.1-1) ...

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/debs/cran-car-r215_2.0-20-1_darwin-x86_64.deb
Selecting previously deselected package cran-car-r215.
(Reading database ... 8007 files and directories currently installed.)
Unpacking cran-car-r215 (from .../cran-car-r215_2.0-20-1_darwin-x86_64.deb) ...
Setting up cran-car-r215 (2.0-20-1) ...

Setting runtime build-lock...
dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-rpubchem-r215-1.5.0.2-1 /sw/build.build
dpkg-deb: building package `fink-buildlock-cran-rpubchem-r215-1.5.0.2-1' in `/sw/build.build/fink-buildlock-cran-rpubchem-r215-1.5.0.2-1_2014.07.29-01.54.17_darwin-x86_64.deb'.
Installing build-lock package...
/sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-rpubchem-r215-1.5.0.2-1_2014.07.29-01.54.17_darwin-x86_64.deb
Selecting previously deselected package fink-buildlock-cran-rpubchem-r215-1.5.0.2-1.
(Reading database ... 8043 files and directories currently installed.)
Unpacking fink-buildlock-cran-rpubchem-r215-1.5.0.2-1 (from .../fink-buildlock-cran-rpubchem-r215-1.5.0.2-1_2014.07.29-01.54.17_darwin-x86_64.deb) ...
Setting up fink-buildlock-cran-rpubchem-r215-1.5.0.2-1 (2014.07.29-01.54.17) ...

sudo -u fink-bld [ENV] sh -c /tmp/fink.1RB6e
env LANG=C LC_ALL=C /sw/bin/tar  --no-same-owner --no-same-permissions -xvf /sw/src/rpubchem_1.5.0.2.tar.gz
rpubchem/
rpubchem/NAMESPACE
rpubchem/R/
rpubchem/R/bioassayQueries.R
rpubchem/R/getassay.R
rpubchem/MD5
rpubchem/DESCRIPTION
rpubchem/man/
rpubchem/man/getaidcid.Rd
rpubchem/man/getadesc.Rd
rpubchem/man/getsid.Rd
rpubchem/man/getcid.Rd
rpubchem/man/getcsid.Rd
rpubchem/man/getassaysummary.Rd
rpubchem/man/getassay.Rd
rpubchem/man/findaid.Rd
sudo -u fink-bld [ENV] sh -c /tmp/fink.ef0j1
/tmp/fink.Fh9_1
#!/bin/bash -ev
  export TMPDIR=/sw/build.build/cran-rpubchem-r215-1.5.0.2-1/rpubchem/tmp
  BIN_R=/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R
  
  pushd ..
/sw/build.build/cran-rpubchem-r215-1.5.0.2-1 /sw/build.build/cran-rpubchem-r215-1.5.0.2-1/rpubchem
  if [[ 2.15 > 2.15 ]]; then
    $BIN_R --verbose CMD build --no-build-vignettes rpubchem
  else
    $BIN_R --verbose CMD build --no-vignettes rpubchem
  fi
* checking for file 'rpubchem/DESCRIPTION' ... OK
* preparing 'rpubchem':
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'rpubchem_1.5.0.2.tar.gz'

/bin/rm -rf /sw/build.build/root-cran-rpubchem-r215-1.5.0.2-1
/bin/mkdir -p /sw/build.build/root-cran-rpubchem-r215-1.5.0.2-1/sw
/bin/mkdir -p /sw/build.build/root-cran-rpubchem-r215-1.5.0.2-1/DEBIAN
/usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-rpubchem-r215-1.5.0.2-1
sudo -u fink-bld [ENV] sh -c /tmp/fink.2Zprw
/tmp/fink.1N7bL
#!/bin/sh -ev
  BIN_R=/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R
  
  mkdir -p /sw/build.build/root-cran-rpubchem-r215-1.5.0.2-1/sw/lib/R/2.15/site-library
  pushd /sw/build.build/cran-rpubchem-r215-1.5.0.2-1/rpubchem/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-rpubchem-r215-1.5.0.2-1/sw/lib/R/2.15/site-library rpubchem
/sw/build.build/cran-rpubchem-r215-1.5.0.2-1 /sw/build.build/cran-rpubchem-r215-1.5.0.2-1/rpubchem
* installing *source* package 'rpubchem' ...
** package 'rpubchem' successfully unpacked and MD5 sums checked
** R
** preparing package for lazy loading
Warning: replacing previous import 'coerce' when loading 'RCurl'
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Warning: replacing previous import 'coerce' when loading 'RCurl'

* DONE (rpubchem)
sudo -u fink-bld [ENV] sh -c /tmp/fink.Q7ybW
/bin/rm -f /sw/build.build/root-cran-rpubchem-r215-1.5.0.2-1/sw/info/dir /sw/build.build/root-cran-rpubchem-r215-1.5.0.2-1/sw/info/dir.old /sw/build.build/root-cran-rpubchem-r215-1.5.0.2-1/sw/share/info/dir /sw/build.build/root-cran-rpubchem-r215-1.5.0.2-1/sw/share/info/dir.old
Reverting ownership of install dir to root
Writing control file...
Writing md5sums file...
env LANG=C LC_ALL=C dpkg-deb -b root-cran-rpubchem-r215-1.5.0.2-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods
dpkg-deb: building package `cran-rpubchem-r215' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-rpubchem-r215_1.5.0.2-1_darwin-x86_64.deb'.
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-cran-rpubchem-r215-1.5.0.2-1
(Reading database ... 8044 files and directories currently installed.)
Removing fink-buildlock-cran-rpubchem-r215-1.5.0.2-1 ...