printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-rserve-r215 2>&1 The package 'cran-rserve-r215' will be built without being installed. Reading build dependency for cran-rserve-r215-1.7-3-1... Reading dependency for cran-rserve-r215-1.7-3-1... Reading build conflict for cran-rserve-r215-1.7-3-1... The package 'r-base215-dev' will be installed. Reading dependency for r-base215-dev-2.15.3-112... Reading runtime dependency for r-base215-dev-2.15.3-112... The package 'libgettext8-dev' will be installed. Reading dependency for libgettext8-dev-0.18.3.1-2... Reading runtime dependency for libgettext8-dev-0.18.3.1-2... The package 'openssl100-dev' will be installed. Reading dependency for openssl100-dev-1.0.1h-1... Reading runtime dependency for openssl100-dev-1.0.1h-1... The package 'r-base215' will be installed. Reading dependency for r-base215-2.15.3-112... Reading runtime dependency for r-base215-2.15.3-112... The package 'openssl100-shlibs' will be installed. Reading dependency for openssl100-shlibs-1.0.1h-1... Reading runtime dependency for openssl100-shlibs-1.0.1h-1... The package 'r-base215-shlibs' will be installed. Reading dependency for r-base215-shlibs-2.15.3-112... Reading runtime dependency for r-base215-shlibs-2.15.3-112... The package 'gettext-bin' will be installed. Reading dependency for gettext-bin-0.18.3.1-2... Reading runtime dependency for gettext-bin-0.18.3.1-2... The package 'flag-sort' will be installed. Reading dependency for flag-sort-0.5-1... Reading runtime dependency for flag-sort-0.5-1... The package 'cairo-shlibs' will be installed. Reading dependency for cairo-shlibs-1.12.14-1... Reading runtime dependency for cairo-shlibs-1.12.14-1... The package 'gcc49-shlibs' will be installed. Reading dependency for gcc49-shlibs-4.9.1-1000... Reading runtime dependency for gcc49-shlibs-4.9.1-1000... The package 'glib2-shlibs' will be installed. Reading dependency for glib2-shlibs-2.22.4-8... Reading runtime dependency for glib2-shlibs-2.22.4-8... The package 'libicu48-shlibs' will be installed. Reading dependency for libicu48-shlibs-4.8.1.1-2... Reading runtime dependency for libicu48-shlibs-4.8.1.1-2... The package 'libjpeg9-shlibs' will be installed. Reading dependency for libjpeg9-shlibs-9a-1... Reading runtime dependency for libjpeg9-shlibs-9a-1... The package 'liblzma5-shlibs' will be installed. Reading dependency for liblzma5-shlibs-5.0.5-2... Reading runtime dependency for liblzma5-shlibs-5.0.5-2... The package 'libpng16-shlibs' will be installed. Reading dependency for libpng16-shlibs-1.6.12-1... Reading runtime dependency for libpng16-shlibs-1.6.12-1... The package 'libtiff5-shlibs' will be installed. Reading dependency for libtiff5-shlibs-4.0.3-5... Reading runtime dependency for libtiff5-shlibs-4.0.3-5... The package 'pango1-xft2-ft219-shlibs' will be installed. Reading dependency for pango1-xft2-ft219-shlibs-1.24.5-9... Reading runtime dependency for pango1-xft2-ft219-shlibs-1.24.5-9... The package 'libpcre1-shlibs' will be installed. Reading dependency for libpcre1-shlibs-8.35-1... Reading runtime dependency for libpcre1-shlibs-8.35-1... The package 'readline6-shlibs' will be installed. Reading dependency for readline6-shlibs-6.3.6-1... Reading runtime dependency for readline6-shlibs-6.3.6-1... The package 'tcltk' will be installed. Reading dependency for tcltk-8.6.1-104... Reading runtime dependency for tcltk-8.6.1-104... The package 'fontconfig2-shlibs' will be installed. Reading dependency for fontconfig2-shlibs-2.10.2-1... Reading runtime dependency for fontconfig2-shlibs-2.10.2-1... The package 'freetype219-shlibs' will be installed. Reading dependency for freetype219-shlibs-2.4.12-1... Reading runtime dependency for freetype219-shlibs-2.4.12-1... The package 'pixman-shlibs' will be installed. Reading dependency for pixman-shlibs-0.32.4-1... Reading runtime dependency for pixman-shlibs-0.32.4-1... The package 'xdg-base' will be installed. Reading dependency for xdg-base-0.8-2... Reading runtime dependency for xdg-base-0.8-2... The package 'libjbig-shlibs' will be installed. Reading dependency for libjbig-shlibs-2.0-1... Reading runtime dependency for libjbig-shlibs-2.0-1... The package 'libthai-shlibs' will be installed. Reading dependency for libthai-shlibs-0.1.20-1... Reading runtime dependency for libthai-shlibs-0.1.20-1... The package 'xft2-shlibs' will be installed. Reading dependency for xft2-shlibs-2.2.0-3... Reading runtime dependency for xft2-shlibs-2.2.0-3... The package 'tcltk-shlibs' will be installed. Reading dependency for tcltk-shlibs-8.6.1-104... Reading runtime dependency for tcltk-shlibs-8.6.1-104... The package 'fontconfig-config' will be installed. Reading dependency for fontconfig-config-2.10.2-1... Reading runtime dependency for fontconfig-config-2.10.2-1... The package 'expat1-shlibs' will be installed. Reading dependency for expat1-shlibs-2.1.0-1... Reading runtime dependency for expat1-shlibs-2.1.0-1... The package 'libdatrie1-shlibs' will be installed. Reading dependency for libdatrie1-shlibs-0.2.8-2... Reading runtime dependency for libdatrie1-shlibs-0.2.8-2... The package 'libthai' will be installed. Reading dependency for libthai-0.1.20-1... Reading runtime dependency for libthai-0.1.20-1... The following package will be rebuilt: cran-rserve-r215 The following 32 additional packages will be installed: cairo-shlibs expat1-shlibs flag-sort fontconfig-config fontconfig2-shlibs freetype219-shlibs gcc49-shlibs gettext-bin glib2-shlibs libdatrie1-shlibs libgettext8-dev libicu48-shlibs libjbig-shlibs libjpeg9-shlibs liblzma5-shlibs libpcre1-shlibs libpng16-shlibs libthai libthai-shlibs libtiff5-shlibs openssl100-dev openssl100-shlibs pango1-xft2-ft219-shlibs pixman-shlibs r-base215 r-base215-dev r-base215-shlibs readline6-shlibs tcltk tcltk-shlibs xdg-base xft2-shlibs Do you want to continue? [Y/n] (assuming default) Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/expat1-shlibs_2.1.0-1_darwin-x86_64.deb Selecting previously deselected package expat1-shlibs. (Reading database ... 4740 files and directories currently installed.) Unpacking expat1-shlibs (from .../expat1-shlibs_2.1.0-1_darwin-x86_64.deb) ... Setting up expat1-shlibs (2.1.0-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/flag-sort_0.5-1_darwin-x86_64.deb Selecting previously deselected package flag-sort. (Reading database ... 4745 files and directories currently installed.) Unpacking flag-sort (from .../flag-sort_0.5-1_darwin-x86_64.deb) ... Setting up flag-sort (0.5-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/freetype219-shlibs_2.4.12-1_darwin-x86_64.deb Selecting previously deselected package freetype219-shlibs. (Reading database ... 4746 files and directories currently installed.) Unpacking freetype219-shlibs (from .../freetype219-shlibs_2.4.12-1_darwin-x86_64.deb) ... Setting up freetype219-shlibs (2.4.12-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/gcc49-shlibs_4.9.1-1000_darwin-x86_64.deb Selecting previously deselected package gcc49-shlibs. (Reading database ... 4757 files and directories currently installed.) Unpacking gcc49-shlibs (from .../gcc49-shlibs_4.9.1-1000_darwin-x86_64.deb) ... Setting up gcc49-shlibs (4.9.1-1000) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libdatrie1-shlibs_0.2.8-2_darwin-x86_64.deb Selecting previously deselected package libdatrie1-shlibs. (Reading database ... 4802 files and directories currently installed.) Unpacking libdatrie1-shlibs (from .../libdatrie1-shlibs_0.2.8-2_darwin-x86_64.deb) ... Setting up libdatrie1-shlibs (0.2.8-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/libgettext8-dev_0.18.3.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/base/gettext-bin_0.18.3.1-2_darwin-x86_64.deb Selecting previously deselected package libgettext8-dev. (Reading database ... 4809 files and directories currently installed.) Unpacking libgettext8-dev (from .../libgettext8-dev_0.18.3.1-2_darwin-x86_64.deb) ... Selecting previously deselected package gettext-bin. Unpacking gettext-bin (from .../gettext-bin_0.18.3.1-2_darwin-x86_64.deb) ... Setting up gettext-bin (0.18.3.1-2) ... Setting up libgettext8-dev (0.18.3.1-2) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libicu48-shlibs_4.8.1.1-2_darwin-x86_64.deb Selecting previously deselected package libicu48-shlibs. (Reading database ... 4903 files and directories currently installed.) Unpacking libicu48-shlibs (from .../libicu48-shlibs_4.8.1.1-2_darwin-x86_64.deb) ... Setting up libicu48-shlibs (4.8.1.1-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjbig-shlibs_2.0-1_darwin-x86_64.deb Selecting previously deselected package libjbig-shlibs. (Reading database ... 4917 files and directories currently installed.) Unpacking libjbig-shlibs (from .../libjbig-shlibs_2.0-1_darwin-x86_64.deb) ... Setting up libjbig-shlibs (2.0-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjpeg9-shlibs_9a-1_darwin-x86_64.deb Selecting previously deselected package libjpeg9-shlibs. (Reading database ... 4924 files and directories currently installed.) 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Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libpng16-shlibs_1.6.12-1_darwin-x86_64.deb Selecting previously deselected package libpng16-shlibs. (Reading database ... 4951 files and directories currently installed.) Unpacking libpng16-shlibs (from .../libpng16-shlibs_1.6.12-1_darwin-x86_64.deb) ... Setting up libpng16-shlibs (1.6.12-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libthai-shlibs_0.1.20-1_darwin-x86_64.deb /sw/fink/debs/libthai_0.1.20-1_darwin-x86_64.deb Selecting previously deselected package libthai-shlibs. (Reading database ... 4959 files and directories currently installed.) Unpacking libthai-shlibs (from .../libthai-shlibs_0.1.20-1_darwin-x86_64.deb) ... Selecting previously deselected package libthai. Unpacking libthai (from .../libthai_0.1.20-1_darwin-x86_64.deb) ... Setting up libthai (0.1.20-1) ... Setting up libthai-shlibs (0.1.20-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/libtiff5-shlibs_4.0.3-5_darwin-x86_64.deb Selecting previously deselected package libtiff5-shlibs. (Reading database ... 4974 files and directories currently installed.) Unpacking libtiff5-shlibs (from .../libtiff5-shlibs_4.0.3-5_darwin-x86_64.deb) ... Setting up libtiff5-shlibs (4.0.3-5) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/openssl100-dev_1.0.1h-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/base/openssl100-shlibs_1.0.1h-1_darwin-x86_64.deb Selecting previously deselected package openssl100-dev. (Reading database ... 4979 files and directories currently installed.) Unpacking openssl100-dev (from .../openssl100-dev_1.0.1h-1_darwin-x86_64.deb) ... Selecting previously deselected package openssl100-shlibs. Unpacking openssl100-shlibs (from .../openssl100-shlibs_1.0.1h-1_darwin-x86_64.deb) ... Setting up openssl100-shlibs (1.0.1h-1) ... Setting up openssl100-dev (1.0.1h-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/pixman-shlibs_0.32.4-1_darwin-x86_64.deb Selecting previously deselected package pixman-shlibs. (Reading database ... 6257 files and directories currently installed.) Unpacking pixman-shlibs (from .../pixman-shlibs_0.32.4-1_darwin-x86_64.deb) ... Setting up pixman-shlibs (0.32.4-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/readline6-shlibs_6.3.6-1_darwin-x86_64.deb Selecting previously deselected package readline6-shlibs. (Reading database ... 6261 files and directories currently installed.) Unpacking readline6-shlibs (from .../readline6-shlibs_6.3.6-1_darwin-x86_64.deb) ... Setting up readline6-shlibs (6.3.6-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/xdg-base_0.8-2_darwin-x86_64.deb Selecting previously deselected package xdg-base. (Reading database ... 6272 files and directories currently installed.) Unpacking xdg-base (from .../xdg-base_0.8-2_darwin-x86_64.deb) ... Setting up xdg-base (0.8-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig2-shlibs_2.10.2-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig-config_2.10.2-1_darwin-x86_64.deb Selecting previously deselected package fontconfig2-shlibs. (Reading database ... 6274 files and directories currently installed.) Unpacking fontconfig2-shlibs (from .../fontconfig2-shlibs_2.10.2-1_darwin-x86_64.deb) ... Selecting previously deselected package fontconfig-config. 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All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/cairo-shlibs_1.12.14-1_darwin-x86_64.deb Selecting previously deselected package cairo-shlibs. (Reading database ... 6587 files and directories currently installed.) Unpacking cairo-shlibs (from .../cairo-shlibs_1.12.14-1_darwin-x86_64.deb) ... Setting up cairo-shlibs (1.12.14-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/gnome/pango1-xft2-ft219-shlibs_1.24.5-9_darwin-x86_64.deb Selecting previously deselected package pango1-xft2-ft219-shlibs. (Reading database ... 6606 files and directories currently installed.) Unpacking pango1-xft2-ft219-shlibs (from .../pango1-xft2-ft219-shlibs_1.24.5-9_darwin-x86_64.deb) ... Setting up pango1-xft2-ft219-shlibs (1.24.5-9) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/tcltk_8.6.1-104_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/tcltk-shlibs_8.6.1-104_darwin-x86_64.deb Selecting previously deselected package tcltk. (Reading database ... 6650 files and directories currently installed.) Unpacking tcltk (from .../tcltk_8.6.1-104_darwin-x86_64.deb) ... Selecting previously deselected package tcltk-shlibs. Unpacking tcltk-shlibs (from .../tcltk-shlibs_8.6.1-104_darwin-x86_64.deb) ... Setting up tcltk-shlibs (8.6.1-104) ... Setting up tcltk (8.6.1-104) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base215_2.15.3-112_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base215-shlibs_2.15.3-112_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base215-dev_2.15.3-112_darwin-x86_64.deb Selecting previously deselected package r-base215. (Reading database ... 7125 files and directories currently installed.) Unpacking r-base215 (from .../r-base215_2.15.3-112_darwin-x86_64.deb) ... Selecting previously deselected package r-base215-shlibs. Unpacking r-base215-shlibs (from .../r-base215-shlibs_2.15.3-112_darwin-x86_64.deb) ... Selecting previously deselected package r-base215-dev. Unpacking r-base215-dev (from .../r-base215-dev_2.15.3-112_darwin-x86_64.deb) ... Setting up r-base215-shlibs (2.15.3-112) ... Setting up r-base215-dev (2.15.3-112) ... Setting up r-base215 (2.15.3-112) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-rserve-r215-1.7-3-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-rserve-r215-1.7-3-1' in `/sw/build.build/fink-buildlock-cran-rserve-r215-1.7-3-1_2014.08.05-01.17.38_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-rserve-r215-1.7-3-1_2014.08.05-01.17.38_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-rserve-r215-1.7-3-1. (Reading database ... 9278 files and directories currently installed.) Unpacking fink-buildlock-cran-rserve-r215-1.7-3-1 (from .../fink-buildlock-cran-rserve-r215-1.7-3-1_2014.08.05-01.17.38_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-rserve-r215-1.7-3-1 (2014.08.05-01.17.38) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.CkghK env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/Rserve_1.7-3.tar.gz Rserve/ Rserve/inst/ Rserve/inst/java/ Rserve/inst/java/Rserve.jar Rserve/inst/java/REngine.jar Rserve/configure.ac Rserve/src/ Rserve/src/oc.h Rserve/src/base64.c Rserve/src/http.c Rserve/src/rsio.c Rserve/src/winembed.c Rserve/src/Rsrv.h Rserve/src/RSserver.c Rserve/src/sha1.h Rserve/src/config.h.in Rserve/src/oc.c Rserve/src/install.libs.R Rserve/src/tls.c Rserve/src/tls.h Rserve/src/session.c Rserve/src/rserr.h Rserve/src/qap_encode.c Rserve/src/RSserver.h Rserve/src/other/ Rserve/src/other/RSpool.c Rserve/src/md5.c Rserve/src/qap_encode.h Rserve/src/mergefat Rserve/src/sha1.c Rserve/src/rsdebug.h Rserve/src/websockets.c Rserve/src/client/ Rserve/src/client/java/ Rserve/src/client/java/REngineCallbacks.java Rserve/src/client/java/REngineStdOutput.java Rserve/src/client/java/Makefile Rserve/src/client/java/REXPGenericVector.java Rserve/src/client/java/REXPJavaReference.java Rserve/src/client/java/REXPInteger.java Rserve/src/client/java/REXPExpressionVector.java Rserve/src/client/java/REXPVector.java Rserve/src/client/java/JRI/ Rserve/src/client/java/JRI/Makefile Rserve/src/client/java/JRI/JRIEngine.java Rserve/src/client/java/JRI/test/ Rserve/src/client/java/JRI/test/Makefile Rserve/src/client/java/JRI/test/RTest.java Rserve/src/client/java/JRI/package-info.java Rserve/src/client/java/REngineEvalException.java Rserve/src/client/java/REngineConsoleHistoryInterface.java Rserve/src/client/java/REngine.java Rserve/src/client/java/REXP.java Rserve/src/client/java/REXPLogical.java Rserve/src/client/java/REngineOutputInterface.java Rserve/src/client/java/REXPFactor.java Rserve/src/client/java/REXPSymbol.java Rserve/src/client/java/REXPRaw.java Rserve/src/client/java/REXPWrapper.java Rserve/src/client/java/REXPLanguage.java Rserve/src/client/java/REXPEnvironment.java Rserve/src/client/java/REXPNull.java Rserve/src/client/java/REXPReference.java Rserve/src/client/java/REXPList.java Rserve/src/client/java/REXPString.java Rserve/src/client/java/RList.java Rserve/src/client/java/RFactor.java Rserve/src/client/java/REXPDouble.java Rserve/src/client/java/LICENSE Rserve/src/client/java/MutableREXP.java Rserve/src/client/java/Rserve/ Rserve/src/client/java/Rserve/Makefile Rserve/src/client/java/Rserve/Rserve.jar Rserve/src/client/java/Rserve/RConnection.java Rserve/src/client/java/Rserve/protocol/ Rserve/src/client/java/Rserve/protocol/RTalk.java Rserve/src/client/java/Rserve/protocol/RPacket.java Rserve/src/client/java/Rserve/protocol/jcrypt.java Rserve/src/client/java/Rserve/protocol/REXPFactory.java Rserve/src/client/java/Rserve/RSession.java Rserve/src/client/java/Rserve/RFileOutputStream.java Rserve/src/client/java/Rserve/RserveException.java Rserve/src/client/java/Rserve/test/ Rserve/src/client/java/Rserve/test/Makefile Rserve/src/client/java/Rserve/test/test.java Rserve/src/client/java/Rserve/test/StartRserve.java Rserve/src/client/java/Rserve/test/jt.java Rserve/src/client/java/Rserve/test/PlotDemo.java Rserve/src/client/java/Rserve/RFileInputStream.java Rserve/src/client/java/Rserve/package-info.java Rserve/src/client/java/REngineInputInterface.java Rserve/src/client/java/REngineException.java Rserve/src/client/java/REXPS4.java Rserve/src/client/java/REXPMismatchException.java Rserve/src/client/java/REngineUIInterface.java Rserve/src/client/java/REXPUnknown.java Rserve/src/client/java/package-info.java Rserve/src/client/cxx/ Rserve/src/client/cxx/rsdown.cc Rserve/src/client/cxx/rcmd.cc Rserve/src/client/cxx/COPYING Rserve/src/client/cxx/configure.ac Rserve/src/client/cxx/Rsrv.h Rserve/src/client/cxx/config.h.in Rserve/src/client/cxx/sisocks.h Rserve/src/client/cxx/Makefile.in Rserve/src/client/cxx/Makefile.win Rserve/src/client/cxx/demo1.cc Rserve/src/client/cxx/rcons.cc Rserve/src/client/cxx/Rconnection.h Rserve/src/client/cxx/configure Rserve/src/client/cxx/ReadMe.txt Rserve/src/client/cxx/Rconnection.cc Rserve/src/client/README.txt Rserve/src/client/php/ Rserve/src/client/php/simple.php Rserve/src/Makevars.in Rserve/src/rsio.h Rserve/src/Rserv.c Rserve/src/session.h Rserve/src/http.h Rserve/src/Makevars.win Rserve/src/qap_decode.c Rserve/src/websockets.h Rserve/src/standalone.c Rserve/src/md5.h Rserve/src/qap_decode.h Rserve/src/include/ Rserve/src/include/sbthread.h Rserve/src/include/sisocks.h Rserve/src/include/Win32/ Rserve/src/include/Win32/config.h Rserve/src/include/Win32/Startup.h Rserve/src/include/Win32/psignal.h Rserve/src/include/Parse.h Rserve/NAMESPACE Rserve/clients Rserve/version Rserve/NEWS Rserve/R/ Rserve/R/conn.R Rserve/MD5 Rserve/DESCRIPTION Rserve/configure Rserve/man/ Rserve/man/Rserv.Rd Rserve/man/run.Rserve.Rd Rserve/man/self.Rd Rserve/configure.win Rserve/cleanup Rserve/LICENSE Rserve/INDEX Rserve/clients.txt sudo -u fink-bld [ENV] sh -c /tmp/fink.ns3iR [ -r /sw/fink/dists/stable/main/finkinfo/libs/rmods/cran-rserve-r.patch ] sudo -u fink-bld [ENV] sh -c /tmp/fink.hV0aZ patch -p1 < /sw/fink/dists/stable/main/finkinfo/libs/rmods/cran-rserve-r.patch patching file src/Makevars.in sudo -u fink-bld [ENV] sh -c /tmp/fink.vDfr_ /tmp/fink.cbe91 #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-rserve-r215-1.7-3-1/Rserve/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R pushd .. /sw/build.build/cran-rserve-r215-1.7-3-1 /sw/build.build/cran-rserve-r215-1.7-3-1/Rserve if [[ 2.15 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes Rserve else $BIN_R --verbose CMD build --no-vignettes Rserve fi * checking for file 'Rserve/DESCRIPTION' ... OK * preparing 'Rserve': * checking DESCRIPTION meta-information ... OK * cleaning src * running 'cleanup' * checking whether 'INDEX' is up-to-date ... NO * use '--force' to remove the existing 'INDEX' * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building 'Rserve_1.7-3.tar.gz' /bin/rm -rf /sw/build.build/root-cran-rserve-r215-1.7-3-1 /bin/mkdir -p /sw/build.build/root-cran-rserve-r215-1.7-3-1/sw /bin/mkdir -p /sw/build.build/root-cran-rserve-r215-1.7-3-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-rserve-r215-1.7-3-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.2BIoe /tmp/fink.1nP6z #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R mkdir -p /sw/build.build/root-cran-rserve-r215-1.7-3-1/sw/lib/R/2.15/site-library pushd /sw/build.build/cran-rserve-r215-1.7-3-1/Rserve/.. && PKG_LIBS="-L/sw/lib" $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-rserve-r215-1.7-3-1/sw/lib/R/2.15/site-library Rserve /sw/build.build/cran-rserve-r215-1.7-3-1 /sw/build.build/cran-rserve-r215-1.7-3-1/Rserve * installing *source* package 'Rserve' ... file 'src/Makevars.in' has the wrong MD5 checksum checking whether to compile the server... yes checking whether to compile the client... no checking for gcc... flag-sort -r gcc -ffor-scope checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether flag-sort -r gcc -ffor-scope accepts -g... yes checking for flag-sort -r gcc -ffor-scope option to accept ISO C89... none needed checking how to run the C preprocessor... flag-sort -r gcc -ffor-scope -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... rm: conftest.dSYM: is a directory rm: conftest.dSYM: is a directory yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking for an ANSI C-conforming const... yes checking whether byte ordering is bigendian... no checking whether time.h and sys/time.h may both be included... yes checking for pid_t... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking return type of signal handlers... void checking for memset... yes checking for mkdir... yes checking for rmdir... yes checking for select... yes checking for socket... yes checking for srandomdev... yes checking for library containing crypt... none required checking crypt.h usability... no checking crypt.h presence... no checking for crypt.h... no checking for socklen_t... yes checking for connect... yes checking whether to enable IPv6... no checking for dlopen in -ldl... yes checking openssl/rsa.h usability... yes checking openssl/rsa.h presence... yes checking for openssl/rsa.h... yes checking for library containing RSA_generate_key... -lcrypto checking openssl/ssl.h usability... yes checking openssl/ssl.h presence... yes checking for openssl/ssl.h... yes checking for library containing SSL_CTX_load_verify_locations... -lssl configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/client/cxx/Makefile config.status: creating src/config.h ** libs flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/sw/include -I/sw/include -fPIC -g -O3 -c RSserver.c -o RSserver.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/sw/include -I/sw/include -fPIC -g -O3 -c Rserv.c -o Rserv.o Rserv.c:2976:16: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare] if (fbufl < 0) fbufl = sfbufSize; ~~~~~ ^ ~ 1 warning generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/sw/include -I/sw/include -fPIC -g -O3 -c base64.c -o base64.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/sw/include -I/sw/include -fPIC -g -O3 -c http.c -o http.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/sw/include -I/sw/include -fPIC -g -O3 -c md5.c -o md5.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/sw/include -I/sw/include -fPIC -g -O3 -c oc.c -o oc.o oc.c:72:11: warning: passing 'unsigned char [64]' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] sha1hash(rbuf, sizeof(rbuf) - 1, hash); ^~~~ ./sha1.h:4:27: note: passing argument to parameter 'buf' here void sha1hash(const char *buf, int len, unsigned char hash[20]); ^ 1 warning generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/sw/include -I/sw/include -fPIC -g -O3 -c qap_decode.c -o qap_decode.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/sw/include -I/sw/include -fPIC -g -O3 -c qap_encode.c -o qap_encode.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/sw/include -I/sw/include -fPIC -g -O3 -c rsio.c -o rsio.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/sw/include -I/sw/include -fPIC -g -O3 -c session.c -o session.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/sw/include -I/sw/include -fPIC -g -O3 -c sha1.c -o sha1.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/sw/include -I/sw/include -fPIC -g -O3 -c standalone.c -o standalone.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/sw/include -I/sw/include -fPIC -g -O3 -c tls.c -o tls.o tls.c:41:15: warning: assigning to 'SSL_METHOD *' (aka 'struct ssl_method_st *') from 'const SSL_METHOD *' (aka 'const struct ssl_method_st *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] t->method = SSLv23_server_method(); ^ ~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/sw/include -I/sw/include -fPIC -g -O3 -c websockets.c -o websockets.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/sw/include -I/sw/include -fPIC -g -O3 -c winembed.c -o winembed.o flag-sort -r gcc -ffor-scope -dynamiclib -Wl,-headerpad_max_install_names -single_module -multiply_defined suppress -L/sw/lib -o Rserve.dylib RSserver.o Rserv.o base64.o http.o md5.o oc.o qap_decode.o qap_encode.o rsio.o session.o sha1.o standalone.o tls.o websockets.o winembed.o -lssl -lcrypto -ldl -L/sw/lib -L/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation flag-sort -r gcc -ffor-scope -DSTANDALONE_RSERVE -DDAEMON -I. -Iinclude -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/sw/include -I/sw/include -fPIC -g -O3 -I/sw/include -g -O3 -DRSERVE_PKG -I. -Iinclude -I/sw/include -o Rserve standalone.c md5.c session.c qap_decode.c qap_encode.c sha1.c base64.c websockets.c RSserver.c tls.c http.c oc.c rsio.c -lssl -lcrypto -ldl -L/sw/lib -L/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation -lssl -lcrypto -ldl -L/sw/lib In file included from standalone.c:6: ./Rserv.c:2976:16: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare] if (fbufl < 0) fbufl = sfbufSize; ~~~~~ ^ ~ 1 warning generated. tls.c:41:15: warning: assigning to 'SSL_METHOD *' (aka 'struct ssl_method_st *') from 'const SSL_METHOD *' (aka 'const struct ssl_method_st *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] t->method = SSLv23_server_method(); ^ ~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. oc.c:72:11: warning: passing 'unsigned char [64]' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] sha1hash(rbuf, sizeof(rbuf) - 1, hash); ^~~~ ./sha1.h:4:27: note: passing argument to parameter 'buf' here void sha1hash(const char *buf, int len, unsigned char hash[20]); ^ 1 warning generated. flag-sort -r gcc -ffor-scope -DSTANDALONE_RSERVE -DRSERV_DEBUG -DNODAEMON -I. -Iinclude -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -DRSERVE_PKG -I. -Iinclude -I/sw/include -I/sw/include -fPIC -g -O3 -DRSERVE_PKG -I. -Iinclude -I/sw/include -o Rserve.dbg standalone.c md5.c session.c qap_decode.c qap_encode.c sha1.c base64.c websockets.c RSserver.c tls.c http.c oc.c rsio.c -lssl -lcrypto -ldl -L/sw/lib -L/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation -lssl -lcrypto -ldl -L/sw/lib In file included from standalone.c:6: ./Rserv.c:2976:16: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare] if (fbufl < 0) fbufl = sfbufSize; ~~~~~ ^ ~ 1 warning generated. tls.c:41:15: warning: assigning to 'SSL_METHOD *' (aka 'struct ssl_method_st *') from 'const SSL_METHOD *' (aka 'const struct ssl_method_st *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] t->method = SSLv23_server_method(); ^ ~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. oc.c:72:11: warning: passing 'unsigned char [64]' to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] sha1hash(rbuf, sizeof(rbuf) - 1, hash); ^~~~ ./sha1.h:4:27: note: passing argument to parameter 'buf' here void sha1hash(const char *buf, int len, unsigned char hash[20]); ^ 1 warning generated. installing via 'install.libs.R' to /sw/build.build/root-cran-rserve-r215-1.7-3-1/sw/lib/R/2.15/site-library/Rserve generating debug symbols (dSYM) ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (Rserve) install_name_tool -id /sw/lib/R/2.15/site-library/Rserve/libs/Rserve.dylib /sw/build.build/root-cran-rserve-r215-1.7-3-1/sw/lib/R/2.15/site-library/Rserve/libs/Rserve.dylib sudo -u fink-bld [ENV] sh -c /tmp/fink.IbfC1 /bin/rm -f /sw/build.build/root-cran-rserve-r215-1.7-3-1/sw/info/dir /sw/build.build/root-cran-rserve-r215-1.7-3-1/sw/info/dir.old /sw/build.build/root-cran-rserve-r215-1.7-3-1/sw/share/info/dir /sw/build.build/root-cran-rserve-r215-1.7-3-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-rserve-r215-1.7-3-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-rserve-r215' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-rserve-r215_1.7-3-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-rserve-r215-1.7-3-1 (Reading database ... 9279 files and directories currently installed.) Removing fink-buildlock-cran-rserve-r215-1.7-3-1 ...