printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-sets-r215 2>&1 The package 'cran-sets-r215' will be built without being installed. Reading build dependency for cran-sets-r215-1.0-13-1... Reading dependency for cran-sets-r215-1.0-13-1... Reading build conflict for cran-sets-r215-1.0-13-1... The package 'r-base215-dev' will be installed. Reading dependency for r-base215-dev-2.15.3-112... Reading runtime dependency for r-base215-dev-2.15.3-112... The package 'r-base215' will be installed. Reading dependency for r-base215-2.15.3-112... Reading runtime dependency for r-base215-2.15.3-112... The package 'r-base215-shlibs' will be installed. Reading dependency for r-base215-shlibs-2.15.3-112... Reading runtime dependency for r-base215-shlibs-2.15.3-112... The following package will be rebuilt: cran-sets-r215 The following 3 additional packages will be installed: r-base215 r-base215-dev r-base215-shlibs Do you want to continue? [Y/n] (assuming default) Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base215_2.15.3-112_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base215-shlibs_2.15.3-112_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base215-dev_2.15.3-112_darwin-x86_64.deb Selecting previously deselected package r-base215. (Reading database ... 7371 files and directories currently installed.) Unpacking r-base215 (from .../r-base215_2.15.3-112_darwin-x86_64.deb) ... Selecting previously deselected package r-base215-shlibs. Unpacking r-base215-shlibs (from .../r-base215-shlibs_2.15.3-112_darwin-x86_64.deb) ... Selecting previously deselected package r-base215-dev. dpkg: considering removing r-base31-dev in favour of r-base215-dev ... dpkg: yes, will remove r-base31-dev in favour of r-base215-dev. Unpacking r-base215-dev (from .../r-base215-dev_2.15.3-112_darwin-x86_64.deb) ... Setting up r-base215-shlibs (2.15.3-112) ... Setting up r-base215-dev (2.15.3-112) ... Setting up r-base215 (2.15.3-112) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-sets-r215-1.0-13-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-sets-r215-1.0-13-1' in `/sw/build.build/fink-buildlock-cran-sets-r215-1.0-13-1_2014.07.27-09.42.21_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-sets-r215-1.0-13-1_2014.07.27-09.42.21_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-sets-r215-1.0-13-1. (Reading database ... 9473 files and directories currently installed.) Unpacking fink-buildlock-cran-sets-r215-1.0-13-1 (from .../fink-buildlock-cran-sets-r215-1.0-13-1_2014.07.27-09.42.21_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-sets-r215-1.0-13-1 (2014.07.27-09.42.21) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.GOxht env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/sets_1.0-13.tar.gz sets/ sets/MD5 sets/vignettes/ sets/vignettes/sets.bib sets/vignettes/sets.Rnw sets/src/ sets/src/qsort-Vbody.h sets/src/closure.c sets/man/ sets/man/tuple.Rd sets/man/similarity.Rd sets/man/set.Rd sets/man/plot.Rd sets/man/outer.Rd sets/man/options.Rd sets/man/labels.Rd sets/man/interval.Rd sets/man/gset.Rd sets/man/fuzzyinference.Rd sets/man/fuzzyfuns.Rd sets/man/fuzzydocs.Rd sets/man/fuzzy.Rd sets/man/cset.Rd sets/man/closure.Rd sets/man/canonicalizeSetMapping.Rd sets/inst/ sets/inst/doc/ sets/inst/doc/sets.pdf sets/inst/doc/sets.Rnw sets/inst/NEWS.Rd sets/inst/CITATION sets/data/ sets/data/fuzzy_docs.rda sets/R/ sets/R/zzz.R sets/R/utilities.R sets/R/union.R sets/R/tuple.R sets/R/symdiff.R sets/R/summary.R sets/R/sumdiff.R sets/R/str.R sets/R/similarity.R sets/R/set.R sets/R/rep.R sets/R/reduction.R sets/R/product.R sets/R/predicates.R sets/R/power.R sets/R/plot.R sets/R/outer.R sets/R/options.R sets/R/memberships.R sets/R/mean.R sets/R/labels.R sets/R/interval.R sets/R/intersection.R sets/R/gset.R sets/R/fuzzylogic.R sets/R/fuzzyinference.R sets/R/fuzzyfuns.R sets/R/extractors.R sets/R/element.R sets/R/defuzzify.R sets/R/cut.R sets/R/cset.R sets/R/converters.R sets/R/complement.R sets/R/combn.R sets/R/closure.R sets/R/cartesian.R sets/R/cardinality.R sets/R/allEqual.R sets/NAMESPACE sets/DESCRIPTION sudo -u fink-bld [ENV] sh -c /tmp/fink.E2w9B /tmp/fink.az4il #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-sets-r215-1.0-13-1/sets/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R pushd .. /sw/build.build/cran-sets-r215-1.0-13-1 /sw/build.build/cran-sets-r215-1.0-13-1/sets if [[ 2.15 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes sets else $BIN_R --verbose CMD build --no-vignettes sets fi WARNING: ignoring environment value of R_HOME * checking for file 'sets/DESCRIPTION' ... OK * preparing 'sets': * checking DESCRIPTION meta-information ... OK * cleaning src * checking for LF line-endings in source and make files * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added * building 'sets_1.0-13.tar.gz' /bin/rm -rf /sw/build.build/root-cran-sets-r215-1.0-13-1 /bin/mkdir -p /sw/build.build/root-cran-sets-r215-1.0-13-1/sw /bin/mkdir -p /sw/build.build/root-cran-sets-r215-1.0-13-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-sets-r215-1.0-13-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.tlU5M /tmp/fink.Hh0Bi #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R mkdir -p /sw/build.build/root-cran-sets-r215-1.0-13-1/sw/lib/R/2.15/site-library pushd /sw/build.build/cran-sets-r215-1.0-13-1/sets/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-sets-r215-1.0-13-1/sw/lib/R/2.15/site-library sets /sw/build.build/cran-sets-r215-1.0-13-1 /sw/build.build/cran-sets-r215-1.0-13-1/sets WARNING: ignoring environment value of R_HOME * installing *source* package 'sets' ... ** package 'sets' successfully unpacked and MD5 sums checked ** libs flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c closure.c -o closure.o flag-sort -r gcc -ffor-scope -dynamiclib -Wl,-headerpad_max_install_names -single_module -multiply_defined suppress -L/sw/lib -o sets.dylib closure.o -L/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation installing to /sw/build.build/root-cran-sets-r215-1.0-13-1/sw/lib/R/2.15/site-library/sets/libs ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes 'sets.Rnw' ** testing if installed package can be loaded * DONE (sets) install_name_tool -id /sw/lib/R/2.15/site-library/sets/libs/sets.dylib /sw/build.build/root-cran-sets-r215-1.0-13-1/sw/lib/R/2.15/site-library/sets/libs/sets.dylib sudo -u fink-bld [ENV] sh -c /tmp/fink.II1Do /bin/rm -f /sw/build.build/root-cran-sets-r215-1.0-13-1/sw/info/dir /sw/build.build/root-cran-sets-r215-1.0-13-1/sw/info/dir.old /sw/build.build/root-cran-sets-r215-1.0-13-1/sw/share/info/dir /sw/build.build/root-cran-sets-r215-1.0-13-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-sets-r215-1.0-13-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-sets-r215' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-sets-r215_1.0-13-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-sets-r215-1.0-13-1 (Reading database ... 9474 files and directories currently installed.) Removing fink-buildlock-cran-sets-r215-1.0-13-1 ...