printf '
' | fink --no-use-binary-dist --yes rebuild cran-sm-r215 2>&1
The package 'cran-sm-r215' will be built without being installed.
Reading build dependency for cran-sm-r215-2.2-5.4-2...
Reading dependency for cran-sm-r215-2.2-5.4-2...
Reading build conflict for cran-sm-r215-2.2-5.4-2...
The following package will be rebuilt:
cran-sm-r215
Setting runtime build-lock...
dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-sm-r215-2.2-5.4-2 /sw/build.build
dpkg-deb: building package `fink-buildlock-cran-sm-r215-2.2-5.4-2' in `/sw/build.build/fink-buildlock-cran-sm-r215-2.2-5.4-2_2014.08.04-07.55.14_darwin-x86_64.deb'.
Installing build-lock package...
/sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-sm-r215-2.2-5.4-2_2014.08.04-07.55.14_darwin-x86_64.deb
Selecting previously deselected package fink-buildlock-cran-sm-r215-2.2-5.4-2.
(Reading database ... 8001 files and directories currently installed.)
Unpacking fink-buildlock-cran-sm-r215-2.2-5.4-2 (from .../fink-buildlock-cran-sm-r215-2.2-5.4-2_2014.08.04-07.55.14_darwin-x86_64.deb) ...
Setting up fink-buildlock-cran-sm-r215-2.2-5.4-2 (2014.08.04-07.55.14) ...
sudo -u fink-bld [ENV] sh -c /tmp/fink.Jgn_j
env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/sm_2.2-5.4.tar.gz
sm/
sm/po/
sm/po/R-sm.pot
sm/inst/
sm/inst/COPYING
sm/inst/history.txt
sm/inst/CITATION
sm/inst/smdata/
sm/inst/smdata/stanford.dat
sm/inst/smdata/magrem.dat
sm/inst/smdata/stanford.doc
sm/inst/smdata/trout.doc
sm/inst/smdata/geys3d.dat
sm/inst/smdata/smacker.dat
sm/inst/smdata/radioc.dat
sm/inst/smdata/coalash.doc
sm/inst/smdata/bissell.doc
sm/inst/smdata/mildew.doc
sm/inst/smdata/tephra.dat
sm/inst/smdata/aircraft.doc
sm/inst/smdata/bonions.dat
sm/inst/smdata/propsim.dat
sm/inst/smdata/smacker.doc
sm/inst/smdata/citrate.dat
sm/inst/smdata/muscle.dat
sm/inst/smdata/tephra.doc
sm/inst/smdata/phosphat.doc
sm/inst/smdata/geys3d.doc
sm/inst/smdata/mackerel.doc
sm/inst/smdata/follicle.doc
sm/inst/smdata/airpc.doc
sm/inst/smdata/coalash.dat
sm/inst/smdata/worm.dat
sm/inst/smdata/lcancer.doc
sm/inst/smdata/mackerel.dat
sm/inst/smdata/trees.dat
sm/inst/smdata/nile.doc
sm/inst/smdata/bissell.dat
sm/inst/smdata/airpc.dat
sm/inst/smdata/trees.doc
sm/inst/smdata/bonions.doc
sm/inst/smdata/dogs.doc
sm/inst/smdata/mildew.dat
sm/inst/smdata/nile.dat
sm/inst/smdata/britpts.dat
sm/inst/smdata/follicle.dat
sm/inst/smdata/birth.dat
sm/inst/smdata/poles.dat
sm/inst/smdata/trout.dat
sm/inst/smdata/dogs.dat
sm/inst/smdata/muscle.doc
sm/inst/smdata/trawl.dat
sm/inst/smdata/poles.doc
sm/inst/smdata/aircraft.dat
sm/inst/smdata/lcancer.dat
sm/inst/smdata/wonions.doc
sm/inst/smdata/citrate.doc
sm/inst/smdata/trawl.doc
sm/inst/smdata/birth.doc
sm/inst/smdata/radioc.doc
sm/inst/smdata/worm.doc
sm/inst/smdata/magrem.doc
sm/inst/smdata/wonions.dat
sm/inst/scripts/
sm/inst/scripts/air_band.q
sm/inst/scripts/onionplt.q
sm/inst/scripts/nyc.q
sm/inst/scripts/mildew.q
sm/inst/scripts/air_scat.q
sm/inst/scripts/te_var.q
sm/inst/scripts/geys_ts.q
sm/inst/scripts/sp_comp2.q
sm/inst/scripts/bissell3.q
sm/inst/scripts/edfgrad.q
sm/inst/scripts/rc_alter.q
sm/inst/scripts/speed.q
sm/inst/scripts/dogs.q
sm/inst/scripts/lc_dens.q
sm/inst/scripts/lynx.q
sm/inst/scripts/trw_lf.q
sm/inst/scripts/smackgam.q
sm/inst/scripts/trout1.q
sm/inst/scripts/trw_nebd.q
sm/inst/scripts/lc_comp.q
sm/inst/scripts/air_hcv.q
sm/inst/scripts/birth2.q
sm/inst/scripts/trw_nesg.q
sm/inst/scripts/trwlplot.q
sm/inst/scripts/noeff.q
sm/inst/scripts/sp_hist.q
sm/inst/scripts/birth1.q
sm/inst/scripts/mag_scat.q
sm/inst/scripts/sp_comp.q
sm/inst/scripts/trwlgam1.q
sm/inst/scripts/air_imag.q
sm/inst/scripts/rc_plot.q
sm/inst/scripts/stananim.q
sm/inst/scripts/sp_test2.q
sm/inst/scripts/air_cont.q
sm/inst/scripts/speedvar.q
sm/inst/scripts/follicle.q
sm/inst/scripts/sp_build.q
sm/inst/scripts/trwlgam2.q
sm/inst/scripts/bin_use.q
sm/inst/scripts/te_norm.q
sm/inst/scripts/mackplot.q
sm/inst/scripts/mackgam.q
sm/inst/scripts/trout2.q
sm/inst/scripts/sin_cv.q
sm/inst/scripts/trwlboot.q
sm/inst/scripts/geys3d.q
sm/inst/scripts/te_band.q
sm/inst/scripts/stanplot.q
sm/inst/scripts/air_dens.q
sm/inst/scripts/rc_boot.q
sm/inst/scripts/muscle.q
sm/inst/scripts/citrate.q
sm/inst/scripts/bissell2.q
sm/inst/scripts/lc_rr.q
sm/inst/scripts/rc_vband.q
sm/inst/scripts/trwlcomp.q
sm/inst/scripts/sp_alter.q
sm/inst/scripts/trw_lfsg.q
sm/inst/scripts/air_inds.q
sm/inst/scripts/bissell1.q
sm/inst/scripts/trwlcmp2.q
sm/inst/scripts/te_hcvsj.q
sm/inst/scripts/trwlband.q
sm/inst/scripts/sin_prop.q
sm/inst/scripts/smackplt.q
sm/inst/scripts/onionbnd.q
sm/inst/scripts/mackmap.q
sm/inst/scripts/index.doc
sm/inst/scripts/air_ind.q
sm/inst/scripts/mag_dens.q
sm/inst/scripts/trees.q
sm/inst/scripts/wormcomp.q
sm/inst/scripts/sp_test1.q
sm/inst/scripts/air_boot.q
sm/inst/scripts/trwlgam3.q
sm/tests/
sm/tests/test_scripts.R
sm/src/
sm/src/fgamma.c
sm/src/variogram.f90
sm/NAMESPACE
sm/data/
sm/data/stanford.rda
sm/data/bonions.rda
sm/data/worm.rda
sm/data/poles.rda
sm/data/lcancer.rda
sm/data/trawl.rda
sm/data/wonions.rda
sm/data/citrate.rda
sm/data/radioc.rda
sm/data/geyser.tab.gz
sm/data/geys3d.rda
sm/data/trout.rda
sm/data/mackerel.rda
sm/data/smacker.rda
sm/data/tephra.rda
sm/data/britpts.rda
sm/data/magrem.rda
sm/data/mosses.rda
sm/data/coalash.rda
sm/data/aircraft.rda
sm/data/dogs.rda
sm/data/airpc.rda
sm/data/bissell.rda
sm/data/follicle.rda
sm/data/nile.rda
sm/data/mildew.rda
sm/data/birth.rda
sm/data/muscle.rda
sm/R/
sm/R/survival.r
sm/R/ancova.r
sm/R/sm.r
sm/R/density.r
sm/R/ps-normal.r
sm/R/utilities.r
sm/R/pca.r
sm/R/monotonicity.r
sm/R/glm.r
sm/R/regression.r
sm/R/variogram.r
sm/R/hselect.r
sm/R/rpanel.r
sm/R/zzz.R
sm/R/sphere.r
sm/R/discontinuity.r
sm/MD5
sm/DESCRIPTION
sm/ChangeLog
sm/man/
sm/man/sm.sigma.Rd
sm/man/sm.poisson.bootstrap.Rd
sm/man/hnorm.Rd
sm/man/geys3d.Rd
sm/man/lcancer.Rd
sm/man/sm.rm.Rd
sm/man/mosses.Rd
sm/man/h.select.Rd
sm/man/sm.regression.Rd
sm/man/sm.autoregression.Rd
sm/man/sm-internal.Rd
sm/man/bissell.Rd
sm/man/airpc.Rd
sm/man/sm.density.Rd
sm/man/magrem.Rd
sm/man/sm.variogram.Rd
sm/man/worm.Rd
sm/man/dogs.Rd
sm/man/citrate.Rd
sm/man/sm.pca.Rd
sm/man/sm.binomial.bootstrap.Rd
sm/man/provide.data.Rd
sm/man/wonions.Rd
sm/man/pause.Rd
sm/man/sm.survival.Rd
sm/man/sm.binomial.Rd
sm/man/coalash.Rd
sm/man/sm.script.Rd
sm/man/sm.sphere.Rd
sm/man/smacker.Rd
sm/man/sm.ancova.Rd
sm/man/sm.density.compare.Rd
sm/man/sm.poisson.Rd
sm/man/tephra.Rd
sm/man/sm.ts.pdf.Rd
sm/man/trout.Rd
sm/man/hcv.Rd
sm/man/trawl.Rd
sm/man/aircraft.Rd
sm/man/hsj.Rd
sm/man/follicle.Rd
sm/man/stanford.Rd
sm/man/sm.discontinuity.Rd
sm/man/sm.surface3d.Rd
sm/man/radioc.Rd
sm/man/mildew.Rd
sm/man/muscle.Rd
sm/man/binning.Rd
sm/man/mackerel.Rd
sm/man/geyser.Rd
sm/man/nile.Rd
sm/man/britpts.Rd
sm/man/sm.options.Rd
sm/man/nise.Rd
sm/man/sm.monotonicity.Rd
sm/man/birth.Rd
sm/man/sig.trace.Rd
sm/man/sm.sigma2.compare.Rd
sm/man/nnbr.Rd
sm/man/poles.Rd
sm/man/sm.Rd
sm/man/nmise.Rd
sm/man/sm.regression.autocor.Rd
sm/man/bonions.Rd
sudo -u fink-bld [ENV] sh -c /tmp/fink.nSQna
/tmp/fink.Ktgzt
#!/bin/bash -ev
export TMPDIR=/sw/build.build/cran-sm-r215-2.2-5.4-2/sm/tmp
BIN_R=/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R
pushd ..
/sw/build.build/cran-sm-r215-2.2-5.4-2 /sw/build.build/cran-sm-r215-2.2-5.4-2/sm
if [[ 2.15 > 2.15 ]]; then
$BIN_R --verbose CMD build --no-build-vignettes sm
else
$BIN_R --verbose CMD build --no-vignettes sm
fi
* checking for file 'sm/DESCRIPTION' ... OK
* preparing 'sm':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* looking to see if a 'data/datalist' file should be added
* building 'sm_2.2-5.4.tar.gz'
/bin/rm -rf /sw/build.build/root-cran-sm-r215-2.2-5.4-2
/bin/mkdir -p /sw/build.build/root-cran-sm-r215-2.2-5.4-2/sw
/bin/mkdir -p /sw/build.build/root-cran-sm-r215-2.2-5.4-2/DEBIAN
/usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-sm-r215-2.2-5.4-2
sudo -u fink-bld [ENV] sh -c /tmp/fink.NYsmw
/tmp/fink.qCE6U
#!/bin/sh -ev
BIN_R=/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R
mkdir -p /sw/build.build/root-cran-sm-r215-2.2-5.4-2/sw/lib/R/2.15/site-library
pushd /sw/build.build/cran-sm-r215-2.2-5.4-2/sm/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-sm-r215-2.2-5.4-2/sw/lib/R/2.15/site-library sm
/sw/build.build/cran-sm-r215-2.2-5.4-2 /sw/build.build/cran-sm-r215-2.2-5.4-2/sm
* installing *source* package 'sm' ...
** package 'sm' successfully unpacked and MD5 sums checked
** libs
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c fgamma.c -o fgamma.o
/sw/bin/gfortran-fsf-4.9 -fno-common -g -O2 -c variogram.f90 -o variogram.o
make: /sw/bin/gfortran-fsf-4.9: No such file or directory
make: *** [variogram.o] Error 1
ERROR: compilation failed for package 'sm'
* removing '/sw/build.build/root-cran-sm-r215-2.2-5.4-2/sw/lib/R/2.15/site-library/sm'
### execution of /tmp/fink.qCE6U failed, exit code 1
### execution of /tmp/fink.NYsmw failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-cran-sm-r215-2.2-5.4-2
(Reading database ... 8002 files and directories currently installed.)
Removing fink-buildlock-cran-sm-r215-2.2-5.4-2 ...
Failed: phase installing: cran-sm-r215-2.2-5.4-2 failed
Before reporting any errors, please run "fink selfupdate" and try again.
Also try using "fink configure" to set your maximum build jobs to 1 and
attempt to build the package again.
If you continue to have issues, please check to see if the FAQ on Fink's
website solves the problem. If not, ask on one (not both, please) of
these mailing lists:
The Fink Users List <fink-users@lists.sourceforge.net>
The Fink Beginners List <fink-beginners@lists.sourceforge.net>,
with a carbon copy to the maintainer:
Jack Howarth <howarth.at.fink@gmail.com>
Note that this is preferable to emailing just the maintainer directly,
since most fink package maintainers do not have access to all possible
hardware and software configurations.
Please try to include the complete error message in your report. This
generally consists of a compiler line starting with e.g. "gcc" or "g++"
followed by the actual error output from the compiler.
Also include the following system information:
Package manager version: 0.37.0
Distribution version: selfupdate-cvs Thu Jul 24 20:26:24 2014, 10.9, x86_64
Trees: local/main stable/main
Xcode.app: 5.1.1
Xcode command-line tools: 6.0.0.0.1.1405597879
Max. Fink build jobs: 8