printf '

' | fink --no-use-binary-dist --yes  --build-as-nobody rebuild cran-sna-r30 2>&1
The package 'cran-sna-r30' will be built without being installed.
Reading build dependency for cran-sna-r30-2.3-2-2...
Reading dependency for cran-sna-r30-2.3-2-2...
Reading build conflict for cran-sna-r30-2.3-2-2...
The package 'r-base30-dev' will be installed.
Reading dependency for r-base30-dev-3.0.3-8...
Reading runtime dependency for r-base30-dev-3.0.3-8...
The package 'r-base30' will be installed.
Reading dependency for r-base30-3.0.3-8...
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The package 'r-base30-shlibs' will be installed.
Reading dependency for r-base30-shlibs-3.0.3-8...
Reading runtime dependency for r-base30-shlibs-3.0.3-8...
The package 'flag-sort' will be installed.
Reading dependency for flag-sort-0.5-1...
Reading runtime dependency for flag-sort-0.5-1...
The package 'cairo-shlibs' will be installed.
Reading dependency for cairo-shlibs-1.12.14-1...
Reading runtime dependency for cairo-shlibs-1.12.14-1...
The package 'gcc49-shlibs' will be installed.
Reading dependency for gcc49-shlibs-4.9.1-1000...
Reading runtime dependency for gcc49-shlibs-4.9.1-1000...
The package 'libicu48-shlibs' will be installed.
Reading dependency for libicu48-shlibs-4.8.1.1-2...
Reading runtime dependency for libicu48-shlibs-4.8.1.1-2...
The package 'libtiff5-shlibs' will be installed.
Reading dependency for libtiff5-shlibs-4.0.3-5...
Reading runtime dependency for libtiff5-shlibs-4.0.3-5...
The package 'pango1-xft2-ft219-shlibs' will be installed.
Reading dependency for pango1-xft2-ft219-shlibs-1.24.5-9...
Reading runtime dependency for pango1-xft2-ft219-shlibs-1.24.5-9...
The package 'libpcre1-shlibs' will be installed.
Reading dependency for libpcre1-shlibs-8.35-1...
Reading runtime dependency for libpcre1-shlibs-8.35-1...
The package 'readline6-shlibs' will be installed.
Reading dependency for readline6-shlibs-6.3.6-1...
Reading runtime dependency for readline6-shlibs-6.3.6-1...
The package 'tcltk' will be installed.
Reading dependency for tcltk-8.6.1-104...
Reading runtime dependency for tcltk-8.6.1-104...
The package 'fontconfig2-shlibs' will be installed.
Reading dependency for fontconfig2-shlibs-2.10.2-1...
Reading runtime dependency for fontconfig2-shlibs-2.10.2-1...
The package 'pixman-shlibs' will be installed.
Reading dependency for pixman-shlibs-0.32.4-1...
Reading runtime dependency for pixman-shlibs-0.32.4-1...
The package 'libjbig-shlibs' will be installed.
Reading dependency for libjbig-shlibs-2.0-1...
Reading runtime dependency for libjbig-shlibs-2.0-1...
The package 'libthai-shlibs' will be installed.
Reading dependency for libthai-shlibs-0.1.20-1...
Reading runtime dependency for libthai-shlibs-0.1.20-1...
The package 'xft2-shlibs' will be installed.
Reading dependency for xft2-shlibs-2.2.0-3...
Reading runtime dependency for xft2-shlibs-2.2.0-3...
The package 'tcltk-shlibs' will be installed.
Reading dependency for tcltk-shlibs-8.6.1-104...
Reading runtime dependency for tcltk-shlibs-8.6.1-104...
The package 'fontconfig-config' will be installed.
Reading dependency for fontconfig-config-2.10.2-1...
Reading runtime dependency for fontconfig-config-2.10.2-1...
The package 'libdatrie1-shlibs' will be installed.
Reading dependency for libdatrie1-shlibs-0.2.8-2...
Reading runtime dependency for libdatrie1-shlibs-0.2.8-2...
The package 'libthai' will be installed.
Reading dependency for libthai-0.1.20-1...
Reading runtime dependency for libthai-0.1.20-1...
The following package will be rebuilt:
 cran-sna-r30
The following 21 additional packages will be installed:
 cairo-shlibs flag-sort fontconfig-config fontconfig2-shlibs gcc49-shlibs
 libdatrie1-shlibs libicu48-shlibs libjbig-shlibs libpcre1-shlibs libthai
 libthai-shlibs libtiff5-shlibs pango1-xft2-ft219-shlibs pixman-shlibs
 r-base30 r-base30-dev r-base30-shlibs readline6-shlibs tcltk tcltk-shlibs
 xft2-shlibs
Do you want to continue? [Y/n] (assuming default)
Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/debs/flag-sort_0.5-1_darwin-x86_64.deb
Selecting previously deselected package flag-sort.
(Reading database ... 7784 files and directories currently installed.)
Unpacking flag-sort (from .../flag-sort_0.5-1_darwin-x86_64.deb) ...
Setting up flag-sort (0.5-1) ...

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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig2-shlibs_2.10.2-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig-config_2.10.2-1_darwin-x86_64.deb
Selecting previously deselected package fontconfig2-shlibs.
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Setting up fontconfig-config (2.10.2-1) ...

Setting up fontconfig2-shlibs (2.10.2-1) ...

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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/gcc49-shlibs_4.9.1-1000_darwin-x86_64.deb
Selecting previously deselected package gcc49-shlibs.
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Unpacking gcc49-shlibs (from .../gcc49-shlibs_4.9.1-1000_darwin-x86_64.deb) ...
Setting up gcc49-shlibs (4.9.1-1000) ...
Clearing dependency_libs of .la files being installed

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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libdatrie1-shlibs_0.2.8-2_darwin-x86_64.deb
Selecting previously deselected package libdatrie1-shlibs.
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libicu48-shlibs_4.8.1.1-2_darwin-x86_64.deb
Selecting previously deselected package libicu48-shlibs.
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Setting up libicu48-shlibs (4.8.1.1-2) ...

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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjbig-shlibs_2.0-1_darwin-x86_64.deb
Selecting previously deselected package libjbig-shlibs.
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libpcre1-shlibs_8.35-1_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libthai-shlibs_0.1.20-1_darwin-x86_64.deb /sw/fink/debs/libthai_0.1.20-1_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/debs/libtiff5-shlibs_4.0.3-5_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/pixman-shlibs_0.32.4-1_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/readline6-shlibs_6.3.6-1_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/xft2-shlibs_2.2.0-3_darwin-x86_64.deb
Selecting previously deselected package xft2-shlibs.
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/cairo-shlibs_1.12.14-1_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/gnome/pango1-xft2-ft219-shlibs_1.24.5-9_darwin-x86_64.deb
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/sw/bin/dpkg-lockwait -i /sw/fink/debs/tcltk_8.6.1-104_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/tcltk-shlibs_8.6.1-104_darwin-x86_64.deb
Selecting previously deselected package tcltk.
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/sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base30_3.0.3-8_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base30-shlibs_3.0.3-8_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base30-dev_3.0.3-8_darwin-x86_64.deb
Selecting previously deselected package r-base30.
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Setting up r-base30-dev (3.0.3-8) ...

Setting up r-base30 (3.0.3-8) ...

Setting runtime build-lock...
dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-sna-r30-2.3-2-2 /sw/build.build
dpkg-deb: building package `fink-buildlock-cran-sna-r30-2.3-2-2' in `/sw/build.build/fink-buildlock-cran-sna-r30-2.3-2-2_2014.08.04-17.05.10_darwin-x86_64.deb'.
Installing build-lock package...
/sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-sna-r30-2.3-2-2_2014.08.04-17.05.10_darwin-x86_64.deb
Selecting previously deselected package fink-buildlock-cran-sna-r30-2.3-2-2.
(Reading database ... 10518 files and directories currently installed.)
Unpacking fink-buildlock-cran-sna-r30-2.3-2-2 (from .../fink-buildlock-cran-sna-r30-2.3-2-2_2014.08.04-17.05.10_darwin-x86_64.deb) ...
Setting up fink-buildlock-cran-sna-r30-2.3-2-2 (2014.08.04-17.05.10) ...

sudo -u fink-bld [ENV] sh -c /tmp/fink.SU4Dy
env LANG=C LC_ALL=C /sw/bin/tar  --no-same-owner --no-same-permissions -xvf /sw/src/sna_2.3-2.tar.gz
sna/
sna/COPYING
sna/src/
sna/src/layout.h
sna/src/paths.h
sna/src/randomgraph.h
sna/src/gli.c
sna/src/layout.c
sna/src/utils.c
sna/src/triads.h
sna/src/components.c
sna/src/randomgraph.c
sna/src/nli.c
sna/src/cohesion.c
sna/src/paths.c
sna/src/geodist.c
sna/src/utils.h
sna/src/cohesion.h
sna/src/nli.h
sna/src/gli.h
sna/src/geodist.h
sna/src/likelihood.c
sna/src/triads.c
sna/src/likelihood.h
sna/src/components.h
sna/NAMESPACE
sna/data/
sna/data/coleman.RData
sna/R/
sna/R/gtest.R
sna/R/roles.R
sna/R/models.R
sna/R/gli.R
sna/R/gmultiv.R
sna/R/connectivity.R
sna/R/fileio.R
sna/R/visualization.R
sna/R/randomgraph.R
sna/R/dataprep.R
sna/R/nli.R
sna/R/sna-operators.R
sna/R/permutation.R
sna/R/zzz.R
sna/MD5
sna/DESCRIPTION
sna/ChangeLog
sna/man/
sna/man/print.summary.blockmodel.Rd
sna/man/plot.bbnam.Rd
sna/man/ego.extract.Rd
sna/man/cugtest.Rd
sna/man/add.isolates.Rd
sna/man/rgnm.Rd
sna/man/flowbet.Rd
sna/man/summary.lnam.Rd
sna/man/cug.test.Rd
sna/man/bbnam.bf.Rd
sna/man/numperm.Rd
sna/man/structure.statistics.Rd
sna/man/centralization.Rd
sna/man/rgbn.Rd
sna/man/sna.Rd
sna/man/sr2css.Rd
sna/man/gdist.plotdiff.Rd
sna/man/bbnam.Rd
sna/man/gclust.centralgraph.Rd
sna/man/netlm.Rd
sna/man/gplot3d.loop.Rd
sna/man/stackcount.Rd
sna/man/print.summary.netcancor.Rd
sna/man/summary.bayes.factor.Rd
sna/man/sedist.Rd
sna/man/sna-deprecated.Rd
sna/man/gplot.vertex.Rd
sna/man/diag.remove.Rd
sna/man/gplot3d.layout.Rd
sna/man/triad.classify.Rd
sna/man/gclust.boxstats.Rd
sna/man/summary.cugtest.Rd
sna/man/netcancor.Rd
sna/man/rmperm.Rd
sna/man/pstar.Rd
sna/man/write.nos.Rd
sna/man/print.netlogit.Rd
sna/man/sdmat.Rd
sna/man/gplot.Rd
sna/man/plot.blockmodel.Rd
sna/man/structdist.Rd
sna/man/plot.sociomatrix.Rd
sna/man/summary.bbnam.Rd
sna/man/lab.optimize.Rd
sna/man/reachability.Rd
sna/man/gvectorize.Rd
sna/man/graphcent.Rd
sna/man/rguman.Rd
sna/man/gplot3d.Rd
sna/man/read.dot.Rd
sna/man/gcor.Rd
sna/man/sna-coercion.Rd
sna/man/gt.Rd
sna/man/evcent.Rd
sna/man/gdist.plotstats.Rd
sna/man/gcov.Rd
sna/man/print.qaptest.Rd
sna/man/print.summary.netlm.Rd
sna/man/plot.qaptest.Rd
sna/man/connectedness.Rd
sna/man/print.bbnam.Rd
sna/man/lower.tri.remove.Rd
sna/man/print.netlm.Rd
sna/man/closeness.Rd
sna/man/write.dl.Rd
sna/man/plot.cugtest.Rd
sna/man/print.cugtest.Rd
sna/man/print.lnam.Rd
sna/man/gtrans.Rd
sna/man/components.Rd
sna/man/summary.netlm.Rd
sna/man/loadcent.Rd
sna/man/read.nos.Rd
sna/man/upper.tri.remove.Rd
sna/man/sna-internal.Rd
sna/man/print.summary.lnam.Rd
sna/man/prestige.Rd
sna/man/grecip.Rd
sna/man/bonpow.Rd
sna/man/gplot.layout.Rd
sna/man/print.summary.netlogit.Rd
sna/man/npostpred.Rd
sna/man/clique.census.Rd
sna/man/summary.blockmodel.Rd
sna/man/gliop.Rd
sna/man/lubness.Rd
sna/man/hierarchy.Rd
sna/man/infocent.Rd
sna/man/kcores.Rd
sna/man/print.summary.qaptest.Rd
sna/man/nties.Rd
sna/man/hdist.Rd
sna/man/redist.Rd
sna/man/consensus.Rd
sna/man/mutuality.Rd
sna/man/gapply.Rd
sna/man/equiv.clust.Rd
sna/man/summary.netlogit.Rd
sna/man/gscor.Rd
sna/man/plot.lnam.Rd
sna/man/is.connected.Rd
sna/man/interval.graph.Rd
sna/man/sna-defunct.Rd
sna/man/print.netcancor.Rd
sna/man/event2dichot.Rd
sna/man/gplot.target.Rd
sna/man/blockmodel.expand.Rd
sna/man/summary.qaptest.Rd
sna/man/cutpoints.Rd
sna/man/eval.edgeperturbation.Rd
sna/man/stresscent.Rd
sna/man/bicomponent.dist.Rd
sna/man/bn.Rd
sna/man/betweenness.Rd
sna/man/potscalered.mcmc.Rd
sna/man/gplot3d.arrow.Rd
sna/man/print.summary.bbnam.Rd
sna/man/summary.netcancor.Rd
sna/man/lnam.Rd
sna/man/is.isolate.Rd
sna/man/gscov.Rd
sna/man/efficiency.Rd
sna/man/neighborhood.Rd
sna/man/plot.equiv.clust.Rd
sna/man/component.dist.Rd
sna/man/triad.census.Rd
sna/man/path.census.Rd
sna/man/dyad.census.Rd
sna/man/centralgraph.Rd
sna/man/isolates.Rd
sna/man/rgws.Rd
sna/man/rgnmix.Rd
sna/man/gden.Rd
sna/man/print.blockmodel.Rd
sna/man/coleman.Rd
sna/man/print.summary.bayes.factor.Rd
sna/man/symmetrize.Rd
sna/man/rperm.Rd
sna/man/make.stochastic.Rd
sna/man/print.summary.cugtest.Rd
sna/man/blockmodel.Rd
sna/man/degree.Rd
sna/man/gplot.loop.Rd
sna/man/geodist.Rd
sna/man/rgraph.Rd
sna/man/maxflow.Rd
sna/man/brokerage.Rd
sna/man/print.bayes.factor.Rd
sna/man/netlogit.Rd
sna/man/qaptest.Rd
sna/man/nacf.Rd
sna/man/sna.operators.Rd
sna/man/gplot.arrow.Rd
sna/INDEX
sudo -u fink-bld [ENV] sh -c /tmp/fink.QWyZm
/tmp/fink._GGzQ
#!/bin/bash -ev
  export TMPDIR=/sw/build.build/cran-sna-r30-2.3-2-2/sna/tmp
  BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R
  
  pushd ..
/sw/build.build/cran-sna-r30-2.3-2-2 /sw/build.build/cran-sna-r30-2.3-2-2/sna
  if [[ 3.0 > 2.15 ]]; then
    $BIN_R --verbose CMD build --no-build-vignettes sna
  else
    $BIN_R --verbose CMD build --no-vignettes sna
  fi
* checking for file 'sna/DESCRIPTION' ... OK
* preparing 'sna':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* looking to see if a 'data/datalist' file should be added
* building 'sna_2.3-2.tar.gz'

/bin/rm -rf /sw/build.build/root-cran-sna-r30-2.3-2-2
/bin/mkdir -p /sw/build.build/root-cran-sna-r30-2.3-2-2/sw
/bin/mkdir -p /sw/build.build/root-cran-sna-r30-2.3-2-2/DEBIAN
/usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-sna-r30-2.3-2-2
sudo -u fink-bld [ENV] sh -c /tmp/fink.vvF_Z
/tmp/fink.3EsHK
#!/bin/sh -ev
  BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R
  
  mkdir -p /sw/build.build/root-cran-sna-r30-2.3-2-2/sw/lib/R/3.0/site-library
  pushd /sw/build.build/cran-sna-r30-2.3-2-2/sna/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-sna-r30-2.3-2-2/sw/lib/R/3.0/site-library sna
/sw/build.build/cran-sna-r30-2.3-2-2 /sw/build.build/cran-sna-r30-2.3-2-2/sna
* installing *source* package 'sna' ...
** package 'sna' successfully unpacked and MD5 sums checked
** libs
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c cohesion.c -o cohesion.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c components.c -o components.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c geodist.c -o geodist.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c gli.c -o gli.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c layout.c -o layout.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c likelihood.c -o likelihood.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c nli.c -o nli.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c paths.c -o paths.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c randomgraph.c -o randomgraph.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c triads.c -o triads.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c utils.c -o utils.o
flag-sort -r gcc -ffor-scope -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib -o sna.dylib cohesion.o components.o geodist.o gli.o layout.o likelihood.o nli.o paths.o randomgraph.o triads.o utils.o -L/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation
installing to /sw/build.build/root-cran-sna-r30-2.3-2-2/sw/lib/R/3.0/site-library/sna/libs
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (sna)
  install_name_tool -id /sw/lib/R/3.0/site-library/sna/libs/sna.dylib /sw/build.build/root-cran-sna-r30-2.3-2-2/sw/lib/R/3.0/site-library/sna/libs/sna.dylib
sudo -u fink-bld [ENV] sh -c /tmp/fink.bptwA
/bin/rm -f /sw/build.build/root-cran-sna-r30-2.3-2-2/sw/info/dir /sw/build.build/root-cran-sna-r30-2.3-2-2/sw/info/dir.old /sw/build.build/root-cran-sna-r30-2.3-2-2/sw/share/info/dir /sw/build.build/root-cran-sna-r30-2.3-2-2/sw/share/info/dir.old
Reverting ownership of install dir to root
Writing control file...
Creating shlibs files...
Writing md5sums file...
env LANG=C LC_ALL=C dpkg-deb -b root-cran-sna-r30-2.3-2-2 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods
dpkg-deb: building package `cran-sna-r30' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-sna-r30_2.3-2-2_darwin-x86_64.deb'.
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-cran-sna-r30-2.3-2-2
(Reading database ... 10519 files and directories currently installed.)
Removing fink-buildlock-cran-sna-r30-2.3-2-2 ...