printf '

' | fink --no-use-binary-dist --yes  --build-as-nobody rebuild cran-sp-r215 2>&1
The package 'cran-sp-r215' will be built without being installed.
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The package 'r-base215-dev' will be installed.
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The package 'libgettext8-dev' will be installed.
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The package 'r-base215' will be installed.
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The package 'r-base215-shlibs' will be installed.
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The package 'gettext-bin' will be installed.
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The package 'flag-sort' will be installed.
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The package 'cairo-shlibs' will be installed.
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The package 'gcc49-shlibs' will be installed.
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The package 'glib2-shlibs' will be installed.
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The package 'libicu48-shlibs' will be installed.
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The package 'libjpeg9-shlibs' will be installed.
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The package 'liblzma5-shlibs' will be installed.
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The package 'libpng16-shlibs' will be installed.
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The package 'libtiff5-shlibs' will be installed.
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The package 'pango1-xft2-ft219-shlibs' will be installed.
Reading dependency for pango1-xft2-ft219-shlibs-1.24.5-9...
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The package 'libpcre1-shlibs' will be installed.
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The package 'readline6-shlibs' will be installed.
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The package 'tcltk' will be installed.
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The package 'fontconfig2-shlibs' will be installed.
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The package 'freetype219-shlibs' will be installed.
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The package 'pixman-shlibs' will be installed.
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The package 'xdg-base' will be installed.
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The package 'libjbig-shlibs' will be installed.
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The package 'libthai-shlibs' will be installed.
Reading dependency for libthai-shlibs-0.1.20-1...
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The package 'xft2-shlibs' will be installed.
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The package 'tcltk-shlibs' will be installed.
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The package 'fontconfig-config' will be installed.
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The package 'expat1-shlibs' will be installed.
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The package 'libdatrie1-shlibs' will be installed.
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The package 'libthai' will be installed.
Reading dependency for libthai-0.1.20-1...
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The following package will be rebuilt:
 cran-sp-r215
The following 30 additional packages will be installed:
 cairo-shlibs expat1-shlibs flag-sort fontconfig-config fontconfig2-shlibs
 freetype219-shlibs gcc49-shlibs gettext-bin glib2-shlibs libdatrie1-shlibs
 libgettext8-dev libicu48-shlibs libjbig-shlibs libjpeg9-shlibs
 liblzma5-shlibs libpcre1-shlibs libpng16-shlibs libthai libthai-shlibs
 libtiff5-shlibs pango1-xft2-ft219-shlibs pixman-shlibs r-base215
 r-base215-dev r-base215-shlibs readline6-shlibs tcltk tcltk-shlibs xdg-base
 xft2-shlibs
Do you want to continue? [Y/n] (assuming default)
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/expat1-shlibs_2.1.0-1_darwin-x86_64.deb
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dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-sp-r215-1.0-15-2 /sw/build.build
dpkg-deb: building package `fink-buildlock-cran-sp-r215-1.0-15-2' in `/sw/build.build/fink-buildlock-cran-sp-r215-1.0-15-2_2014.07.27-12.04.35_darwin-x86_64.deb'.
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sudo -u fink-bld [ENV] sh -c /tmp/fink.ngXpI
env LANG=C LC_ALL=C /sw/bin/tar  --no-same-owner --no-same-permissions -xvf /sw/src/sp_1.0-15.tar.gz
sp/
sp/inst/
sp/inst/CITATION
sp/inst/ChangeLog
sp/inst/doc/
sp/inst/doc/csdacm.R
sp/inst/doc/intro_sp.R
sp/inst/doc/csdacm.pdf
sp/inst/doc/over.pdf
sp/inst/doc/over.Rnw
sp/inst/doc/csdacm.Rnw
sp/inst/doc/intro_sp.Rnw
sp/inst/doc/intro_sp.pdf
sp/inst/doc/over.R
sp/inst/external/
sp/inst/external/test.ag
sp/inst/external/simple.ag
sp/inst/external/seamap105_mod.csv
sp/inst/include/
sp/inst/include/sp.h
sp/inst/include/sp_xports.c
sp/tests/
sp/tests/point.in.polygon.Rout.save
sp/tests/pass1.Rout.save
sp/tests/spDists.R
sp/tests/point.in.polygon.R
sp/tests/zerodist.R
sp/tests/fail1.R
sp/tests/base.Rout.save
sp/tests/pass1.R
sp/tests/zerodist.Rout.save
sp/tests/over.Rout.save
sp/tests/fail1.Rout.save
sp/tests/grid.Rout.save
sp/tests/base.R
sp/tests/sel.Rout.save
sp/tests/nc.Rout.save
sp/tests/spplot.Rout.save
sp/tests/sp1.Rout.save
sp/tests/spDists.Rout.save
sp/tests/grid.R
sp/tests/sp1.R
sp/tests/spplot.R
sp/tests/sel.R
sp/src/
sp/src/pip2.c
sp/src/sp.h
sp/src/gcdist.c
sp/src/Rcentroid.c
sp/src/sp_xports.c
sp/src/init.c
sp/src/zerodist.c
sp/src/pip.c
sp/src/surfaceArea.c
sp/NAMESPACE
sp/demo/
sp/demo/depend.R
sp/demo/meuse.R
sp/demo/00Index
sp/demo/gallery.R
sp/demo/fib.R
sp/data/
sp/data/meuse.grid_ll.rda
sp/data/meuse.rda
sp/data/Rlogo.rda
sp/data/meuse.grid.rda
sp/data/meuse.riv.rda
sp/R/
sp/R/SpatialPointsDataFrame-methods.R
sp/R/surfaceArea.R
sp/R/flipSGDF.R
sp/R/subset.R
sp/R/Spatial-methods.R
sp/R/point.in.polygon.R
sp/R/chfids.R
sp/R/CRS-methods.R
sp/R/SpatialGridDataFrame-methods.R
sp/R/zerodist.R
sp/R/compassRose.R
sp/R/Class-CRS.R
sp/R/Class-SpatialPointsDataFrame.R
sp/R/Class-SpatialLinesDataFrame.R
sp/R/SpatialPolygonsDataFrame-methods.R
sp/R/sp_spat1.R
sp/R/recenter.R
sp/R/Class-SpatialGridDataFrame.R
sp/R/gridlines.R
sp/R/select.spatial.R
sp/R/Class-SpatialPolygons.R
sp/R/Class-Spatial.R
sp/R/dms.R
sp/R/SpatialPolygons-internals.R
sp/R/overlay.R
sp/R/SpatialLines-methods.R
sp/R/spsample.R
sp/R/asciigrid.R
sp/R/disaggregate.R
sp/R/bubble.R
sp/R/bpy.colors.R
sp/R/Class-SpatialLines.R
sp/R/GridTopology-methods.R
sp/R/SpatialPolygons-methods.R
sp/R/Class-SpatialGrid.R
sp/R/image.R
sp/R/SpatialGrid-methods.R
sp/R/loadmeuse.R
sp/R/gridded.R
sp/R/SpatialPoints-methods.R
sp/R/projected.R
sp/R/merge.R
sp/R/stack.R
sp/R/mapasp.R
sp/R/rbind.R
sp/R/spOptions.R
sp/R/spdists.R
sp/R/Class-GridTopology.R
sp/R/Class-SpatialPoints.R
sp/R/spplot.R
sp/R/SpatialPolygons-displayMethods.R
sp/R/AAA.R
sp/R/Class-SpatialPolygonsDataFrame.R
sp/R/over.R
sp/R/SpatialLinesDataFrame-methods.R
sp/vignettes/
sp/vignettes/over.Rnw
sp/vignettes/csdacm.Rnw
sp/vignettes/intro_sp.Rnw
sp/MD5
sp/build/
sp/build/vignette.rds
sp/DESCRIPTION
sp/ChangeLog
sp/man/
sp/man/SpatialPixels-class.Rd
sp/man/disaggregate.Rd
sp/man/sp-deprecated.Rd
sp/man/SpatialGrid-class.Rd
sp/man/bubble.Rd
sp/man/nowrapSpatialLines.Rd
sp/man/SpatialGridDataFrame.Rd
sp/man/compassRose.Rd
sp/man/select.spatial.Rd
sp/man/Polygons-class.Rd
sp/man/SpatialPoints.Rd
sp/man/spsample.Rd
sp/man/mapasp.Rd
sp/man/spChFIDs-methods.Rd
sp/man/SpatialPolygonsDataFrame-class.Rd
sp/man/SpatialPixelsDataFrame-class.Rd
sp/man/00sp.Rd
sp/man/SpatialPolygons.Rd
sp/man/surfaceArea.Rd
sp/man/asciigrid.Rd
sp/man/Lines-class.Rd
sp/man/zerodist.Rd
sp/man/degaxis.Rd
sp/man/SpatialGrid.Rd
sp/man/meuse.Rd
sp/man/addattr.Rd
sp/man/Line-class.Rd
sp/man/coordinates-methods.Rd
sp/man/DMS-class.Rd
sp/man/polygons.Rd
sp/man/stack.Rd
sp/man/merge.Rd
sp/man/meuse.grid.Rd
sp/man/bpy.colors.Rd
sp/man/SpatialLinesDataFrame-class.Rd
sp/man/SpatialGridDataFrame-class.Rd
sp/man/point.in.polygon.Rd
sp/man/spplot.Rd
sp/man/spTransform.Rd
sp/man/is.projected.Rd
sp/man/dimensions.Rd
sp/man/Spatial-class.Rd
sp/man/gridindex2nb.Rd
sp/man/Rlogo.Rd
sp/man/SpatialPointsDataFrame-class.Rd
sp/man/recenter-methods.Rd
sp/man/as.SpatialPolygons.PolygonsList.Rd
sp/man/bbox.Rd
sp/man/coordinates.Rd
sp/man/SpatialPolygons-class.Rd
sp/man/SpatialLines-class.Rd
sp/man/polygons-methods.Rd
sp/man/panel.Rd
sp/man/loadmeuse.Rd
sp/man/gridlines.Rd
sp/man/Polygon-class.Rd
sp/man/meuse.grid_ll.Rd
sp/man/SpatialLines.Rd
sp/man/as.SpatialPolygons.GridTopology.Rd
sp/man/image.Rd
sp/man/geometry-methods.Rd
sp/man/CRS-class.Rd
sp/man/coordnames-methods.Rd
sp/man/gridded-methods.Rd
sp/man/Line.Rd
sp/man/meuse.riv.Rd
sp/man/SpatialPoints-class.Rd
sp/man/flip.Rd
sp/man/char2dms.Rd
sp/man/over.Rd
sp/man/spDistsN1.Rd
sp/man/GridTopology-class.Rd
sudo -u fink-bld [ENV] sh -c /tmp/fink.PjMYj
[ -r /sw/fink/dists/stable/main/finkinfo/libs/rmods/cran-sp-r.patch ]
sudo -u fink-bld [ENV] sh -c /tmp/fink.52GwL
patch -p1 < /sw/fink/dists/stable/main/finkinfo/libs/rmods/cran-sp-r.patch
patching file src/surfaceArea.c
sudo -u fink-bld [ENV] sh -c /tmp/fink.OSGs4
/tmp/fink.dB4TJ
#!/bin/sh -ev
  export TMPDIR=/sw/build.build/cran-sp-r215-1.0-15-2/sp/tmp
  BIN_R=/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R
  
  pushd ..
/sw/build.build/cran-sp-r215-1.0-15-2 /sw/build.build/cran-sp-r215-1.0-15-2/sp
  if [[ 2.15 > 2.15 ]]; then
    $BIN_R --verbose CMD build --no-build-vignettes sp
  else
    $BIN_R --verbose CMD build --no-vignettes sp
  fi
* checking for file 'sp/DESCRIPTION' ... OK
* preparing 'sp':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* looking to see if a 'data/datalist' file should be added
* building 'sp_1.0-15.tar.gz'

/bin/rm -rf /sw/build.build/root-cran-sp-r215-1.0-15-2
/bin/mkdir -p /sw/build.build/root-cran-sp-r215-1.0-15-2/sw
/bin/mkdir -p /sw/build.build/root-cran-sp-r215-1.0-15-2/DEBIAN
/usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-sp-r215-1.0-15-2
sudo -u fink-bld [ENV] sh -c /tmp/fink.jWltB
/tmp/fink.g8moD
#!/bin/sh -ev
  BIN_R=/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R
  
  mkdir -p /sw/build.build/root-cran-sp-r215-1.0-15-2/sw/lib/R/2.15/site-library
  pushd /sw/build.build/cran-sp-r215-1.0-15-2/sp/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-sp-r215-1.0-15-2/sw/lib/R/2.15/site-library sp
/sw/build.build/cran-sp-r215-1.0-15-2 /sw/build.build/cran-sp-r215-1.0-15-2/sp
* installing *source* package 'sp' ...
file 'src/surfaceArea.c' has the wrong MD5 checksum
** libs
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c Rcentroid.c -o Rcentroid.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c gcdist.c -o gcdist.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c init.c -o init.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c pip.c -o pip.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c pip2.c -o pip2.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c sp_xports.c -o sp_xports.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c surfaceArea.c -o surfaceArea.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c zerodist.c -o zerodist.o
flag-sort -r gcc -ffor-scope -dynamiclib -Wl,-headerpad_max_install_names -single_module -multiply_defined suppress -L/sw/lib -o sp.dylib Rcentroid.o gcdist.o init.o pip.o pip2.o sp_xports.o surfaceArea.o zerodist.o -L/sw/Library/Frameworks/R.framework/Versions/2.15/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation
installing to /sw/build.build/root-cran-sp-r215-1.0-15-2/sw/lib/R/2.15/site-library/sp/libs
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'csdacm.Rnw' 
   'intro_sp.Rnw' 
   'over.Rnw' 
** testing if installed package can be loaded

* DONE (sp)
  install_name_tool -id /sw/lib/R/2.15/site-library/sp/libs/sp.dylib /sw/build.build/root-cran-sp-r215-1.0-15-2/sw/lib/R/2.15/site-library/sp/libs/sp.dylib
sudo -u fink-bld [ENV] sh -c /tmp/fink.MlbaR
/bin/rm -f /sw/build.build/root-cran-sp-r215-1.0-15-2/sw/info/dir /sw/build.build/root-cran-sp-r215-1.0-15-2/sw/info/dir.old /sw/build.build/root-cran-sp-r215-1.0-15-2/sw/share/info/dir /sw/build.build/root-cran-sp-r215-1.0-15-2/sw/share/info/dir.old
/bin/rm -rf /sw/build.build/root-cran-sp-r215-dev-1.0-15-2
/bin/mkdir -p /sw/build.build/root-cran-sp-r215-dev-1.0-15-2/sw
/bin/mkdir -p /sw/build.build/root-cran-sp-r215-dev-1.0-15-2/DEBIAN
/usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-sp-r215-dev-1.0-15-2
sudo -u fink-bld [ENV] sh -c /tmp/fink.filCD
/usr/bin/install -d -m 755 /sw/build.build/root-cran-sp-r215-dev-1.0-15-2/sw/lib/R/2.15/site-library/sp
/bin/mv /sw/build.build/root-cran-sp-r215-1.0-15-2/sw/lib/R/2.15/site-library/sp/include /sw/build.build/root-cran-sp-r215-dev-1.0-15-2/sw/lib/R/2.15/site-library/sp/
/bin/rm -f /sw/build.build/root-cran-sp-r215-dev-1.0-15-2/sw/info/dir /sw/build.build/root-cran-sp-r215-dev-1.0-15-2/sw/info/dir.old /sw/build.build/root-cran-sp-r215-dev-1.0-15-2/sw/share/info/dir /sw/build.build/root-cran-sp-r215-dev-1.0-15-2/sw/share/info/dir.old
Reverting ownership of install dir to root
Writing control file...
Creating shlibs files...
Writing md5sums file...
env LANG=C LC_ALL=C dpkg-deb -b root-cran-sp-r215-1.0-15-2 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods
dpkg-deb: building package `cran-sp-r215' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-sp-r215_1.0-15-2_darwin-x86_64.deb'.
Reverting ownership of install dir to root
Writing control file...
Writing md5sums file...
env LANG=C LC_ALL=C dpkg-deb -b root-cran-sp-r215-dev-1.0-15-2 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods
dpkg-deb: building package `cran-sp-r215-dev' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-sp-r215-dev_1.0-15-2_darwin-x86_64.deb'.
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-cran-sp-r215-1.0-15-2
(Reading database ... 7558 files and directories currently installed.)
Removing fink-buildlock-cran-sp-r215-1.0-15-2 ...