printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-spatialnp-r31 2>&1 The package 'cran-spatialnp-r31' will be built without being installed. Reading build dependency for cran-spatialnp-r31-1.1-1-1... Reading dependency for cran-spatialnp-r31-1.1-1-1... Reading build conflict for cran-spatialnp-r31-1.1-1-1... The package 'r-base31-dev' will be installed. Reading dependency for r-base31-dev-3.1.1-2... Reading runtime dependency for r-base31-dev-3.1.1-2... The package 'r-base31' will be installed. Reading dependency for r-base31-3.1.1-2... Reading runtime dependency for r-base31-3.1.1-2... The package 'r-base31-shlibs' will be installed. Reading dependency for r-base31-shlibs-3.1.1-2... Reading runtime dependency for r-base31-shlibs-3.1.1-2... The following package will be rebuilt: cran-spatialnp-r31 The following 3 additional packages will be installed: r-base31 r-base31-dev r-base31-shlibs Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/SpatialNP_1.1-1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 19649 100 19649 0 0 26400 0 --:--:-- --:--:-- --:--:-- 26374 Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base31_3.1.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base31-shlibs_3.1.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base31-dev_3.1.1-2_darwin-x86_64.deb Selecting previously deselected package r-base31. (Reading database ... 7918 files and directories currently installed.) Unpacking r-base31 (from .../r-base31_3.1.1-2_darwin-x86_64.deb) ... Selecting previously deselected package r-base31-shlibs. Unpacking r-base31-shlibs (from .../r-base31-shlibs_3.1.1-2_darwin-x86_64.deb) ... Selecting previously deselected package r-base31-dev. dpkg: considering removing r-base30-dev in favour of r-base31-dev ... dpkg: yes, will remove r-base30-dev in favour of r-base31-dev. Unpacking r-base31-dev (from .../r-base31-dev_3.1.1-2_darwin-x86_64.deb) ... Setting up r-base31-shlibs (3.1.1-2) ... Setting up r-base31-dev (3.1.1-2) ... Setting up r-base31 (3.1.1-2) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-spatialnp-r31-1.1-1-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-spatialnp-r31-1.1-1-1' in `/sw/build.build/fink-buildlock-cran-spatialnp-r31-1.1-1-1_2014.07.27-19.27.22_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-spatialnp-r31-1.1-1-1_2014.07.27-19.27.22_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-spatialnp-r31-1.1-1-1. (Reading database ... 9836 files and directories currently installed.) Unpacking fink-buildlock-cran-spatialnp-r31-1.1-1-1 (from .../fink-buildlock-cran-spatialnp-r31-1.1-1-1_2014.07.27-19.27.22_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-spatialnp-r31-1.1-1-1 (2014.07.27-19.27.22) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.yRgVp env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/SpatialNP_1.1-1.tar.gz SpatialNP/ SpatialNP/inst/ SpatialNP/inst/ChangeLog SpatialNP/src/ SpatialNP/src/spatialnp.cpp SpatialNP/NAMESPACE SpatialNP/R/ SpatialNP/R/symmsign.shape.R SpatialNP/R/ae.hl.estimate.R SpatialNP/R/sr.indep.test.R SpatialNP/R/signrank.shape.R SpatialNP/R/spatial.location.R SpatialNP/R/rank.shape.R SpatialNP/R/spatial.signs.R SpatialNP/R/signs.shape.R SpatialNP/R/ae.spatial.median.R SpatialNP/R/SSCov.R SpatialNP/R/spatial.shape.R SpatialNP/R/sr.sphere.test.R SpatialNP/R/signrankinternals.R SpatialNP/R/to.shape.R SpatialNP/R/RCov.R SpatialNP/R/spatial.symmsign.R SpatialNP/R/spatial.signrank.R SpatialNP/R/spatial.rank.R SpatialNP/R/mvhuberM.R SpatialNP/R/SRCov.R SpatialNP/R/SCov.R SpatialNP/R/sr.loc.test.R SpatialNP/R/symmhuber.R SpatialNP/MD5 SpatialNP/DESCRIPTION SpatialNP/man/ SpatialNP/man/locationtests.Rd SpatialNP/man/shapematrices.Rd SpatialNP/man/spatial.location.Rd SpatialNP/man/SpatialNP-package.Rd SpatialNP/man/independencetests.Rd SpatialNP/man/sphericitytests.Rd SpatialNP/man/SRCov.Rd SpatialNP/man/spatialsignsranks.Rd SpatialNP/man/Huber.Rd SpatialNP/man/to.shape.Rd sudo -u fink-bld [ENV] sh -c /tmp/fink.8j5L6 /tmp/fink.mSI9f #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-spatialnp-r31-1.1-1-1/SpatialNP/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R pushd .. /sw/build.build/cran-spatialnp-r31-1.1-1-1 /sw/build.build/cran-spatialnp-r31-1.1-1-1/SpatialNP $BIN_R --verbose CMD build --no-build-vignettes SpatialNP * checking for file 'SpatialNP/DESCRIPTION' ... OK * preparing 'SpatialNP': * checking DESCRIPTION meta-information ... OK * cleaning src * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building 'SpatialNP_1.1-1.tar.gz' /bin/rm -rf /sw/build.build/root-cran-spatialnp-r31-1.1-1-1 /bin/mkdir -p /sw/build.build/root-cran-spatialnp-r31-1.1-1-1/sw /bin/mkdir -p /sw/build.build/root-cran-spatialnp-r31-1.1-1-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-spatialnp-r31-1.1-1-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.99UnU /tmp/fink.IpkLY #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R mkdir -p /sw/build.build/root-cran-spatialnp-r31-1.1-1-1/sw/lib/R/3.1/site-library pushd /sw/build.build/cran-spatialnp-r31-1.1-1-1/SpatialNP/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-spatialnp-r31-1.1-1-1/sw/lib/R/3.1/site-library SpatialNP /sw/build.build/cran-spatialnp-r31-1.1-1-1 /sw/build.build/cran-spatialnp-r31-1.1-1-1/SpatialNP * installing *source* package 'SpatialNP' ... ** package 'SpatialNP' successfully unpacked and MD5 sums checked ** libs flag-sort -r g++ -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG -I/sw/include -fPIC -g -O3 -c spatialnp.cpp -o spatialnp.o flag-sort -r g++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib -o SpatialNP.dylib spatialnp.o -L/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation installing to /sw/build.build/root-cran-spatialnp-r31-1.1-1-1/sw/lib/R/3.1/site-library/SpatialNP/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (SpatialNP) install_name_tool -id /sw/lib/R/3.1/site-library/SpatialNP/libs/SpatialNP.dylib /sw/build.build/root-cran-spatialnp-r31-1.1-1-1/sw/lib/R/3.1/site-library/SpatialNP/libs/SpatialNP.dylib sudo -u fink-bld [ENV] sh -c /tmp/fink.qHSgR /bin/rm -f /sw/build.build/root-cran-spatialnp-r31-1.1-1-1/sw/info/dir /sw/build.build/root-cran-spatialnp-r31-1.1-1-1/sw/info/dir.old /sw/build.build/root-cran-spatialnp-r31-1.1-1-1/sw/share/info/dir /sw/build.build/root-cran-spatialnp-r31-1.1-1-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-spatialnp-r31-1.1-1-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-spatialnp-r31' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-spatialnp-r31_1.1-1-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-spatialnp-r31-1.1-1-1 (Reading database ... 9837 files and directories currently installed.) Removing fink-buildlock-cran-spatialnp-r31-1.1-1-1 ...