printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-survey-r30 2>&1 The package 'cran-survey-r30' will be built without being installed. Reading build dependency for cran-survey-r30-3.29-5-1... Reading dependency for cran-survey-r30-3.29-5-1... Reading build conflict for cran-survey-r30-3.29-5-1... The package 'r-base30-dev' will be installed. Reading dependency for r-base30-dev-3.0.3-7... Reading runtime dependency for r-base30-dev-3.0.3-7... The package 'r-base30' will be installed. Reading dependency for r-base30-3.0.3-7... Reading runtime dependency for r-base30-3.0.3-7... The package 'r-base30-shlibs' will be installed. Reading dependency for r-base30-shlibs-3.0.3-7... Reading runtime dependency for r-base30-shlibs-3.0.3-7... The package 'libicu48-shlibs' will be installed. Reading dependency for libicu48-shlibs-4.8.1.1-2... Reading runtime dependency for libicu48-shlibs-4.8.1.1-2... The package 'tcltk' will be installed. Reading dependency for tcltk-8.6.1-104... Reading runtime dependency for tcltk-8.6.1-104... The package 'tcltk-shlibs' will be installed. Reading dependency for tcltk-shlibs-8.6.1-104... Reading runtime dependency for tcltk-shlibs-8.6.1-104... The following package will be rebuilt: cran-survey-r30 The following 6 additional packages will be installed: libicu48-shlibs r-base30 r-base30-dev r-base30-shlibs tcltk tcltk-shlibs Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/survey_3.29-5.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 1 1386k 1 15684 0 0 42303 0 0:00:33 --:--:-- 0:00:33 42274 8 1386k 8 117k 0 0 80109 0 0:00:17 0:00:01 0:00:16 80066 45 1386k 45 637k 0 0 260k 0 0:00:05 0:00:02 0:00:03 260k 77 1386k 77 1071k 0 0 320k 0 0:00:04 0:00:03 0:00:01 319k 100 1386k 100 1386k 0 0 370k 0 0:00:03 0:00:03 --:--:-- 370k Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libicu48-shlibs_4.8.1.1-2_darwin-x86_64.deb Selecting previously deselected package libicu48-shlibs. (Reading database ... 16807 files and directories currently installed.) Unpacking libicu48-shlibs (from .../libicu48-shlibs_4.8.1.1-2_darwin-x86_64.deb) ... Setting up libicu48-shlibs (4.8.1.1-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/tcltk_8.6.1-104_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/languages/tcltk-shlibs_8.6.1-104_darwin-x86_64.deb Selecting previously deselected package tcltk. (Reading database ... 16821 files and directories currently installed.) Unpacking tcltk (from .../tcltk_8.6.1-104_darwin-x86_64.deb) ... Selecting previously deselected package tcltk-shlibs. Unpacking tcltk-shlibs (from .../tcltk-shlibs_8.6.1-104_darwin-x86_64.deb) ... Setting up tcltk-shlibs (8.6.1-104) ... Setting up tcltk (8.6.1-104) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base30_3.0.3-7_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base30-shlibs_3.0.3-7_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base30-dev_3.0.3-7_darwin-x86_64.deb Selecting previously deselected package r-base30. (Reading database ... 17296 files and directories currently installed.) Unpacking r-base30 (from .../r-base30_3.0.3-7_darwin-x86_64.deb) ... Selecting previously deselected package r-base30-shlibs. Unpacking r-base30-shlibs (from .../r-base30-shlibs_3.0.3-7_darwin-x86_64.deb) ... Selecting previously deselected package r-base30-dev. Unpacking r-base30-dev (from .../r-base30-dev_3.0.3-7_darwin-x86_64.deb) ... Setting up r-base30-shlibs (3.0.3-7) ... Setting up r-base30-dev (3.0.3-7) ... Setting up r-base30 (3.0.3-7) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-survey-r30-3.29-5-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-survey-r30-3.29-5-1' in `/sw/build.build/fink-buildlock-cran-survey-r30-3.29-5-1_2014.07.26-11.40.54_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-survey-r30-3.29-5-1_2014.07.26-11.40.54_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-survey-r30-3.29-5-1. (Reading database ... 19238 files and directories currently installed.) Unpacking fink-buildlock-cran-survey-r30-3.29-5-1 (from .../fink-buildlock-cran-survey-r30-3.29-5-1_2014.07.26-11.40.54_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-survey-r30-3.29-5-1 (2014.07.26-11.40.54) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.8wxz_ env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/survey_3.29-5.tar.gz survey/ survey/MD5 survey/tests/ survey/tests/twophase.Rout.save survey/tests/twophase.R survey/tests/survcurve.Rout.save survey/tests/survcurve.R survey/tests/scoping.Rout.save survey/tests/scoping.R survey/tests/regpredict.Rout.save survey/tests/regpredict.R survey/tests/raowuboot.Rout.save survey/tests/raowuboot.R survey/tests/rakecheck.Rout.save survey/tests/rakecheck.R survey/tests/quantile.Rout.save survey/tests/quantile.R survey/tests/pps.Rout.save survey/tests/pps.R survey/tests/nwts.rda survey/tests/nwts.Rout.save survey/tests/nwts.R survey/tests/nwts-cch.Rout.save survey/tests/nwts-cch.R survey/tests/nwtco-subcohort.rda survey/tests/multistage.Rout.save survey/tests/multistage.R survey/tests/lonely.psu.Rout.save survey/tests/lonely.psu.R survey/tests/kalton.Rout.save survey/tests/kalton.R survey/tests/fpc.Rout.save survey/tests/fpc.R survey/tests/domain.Rout.save survey/tests/domain.R survey/tests/deff.Rout.save survey/tests/deff.R survey/tests/check.Rout.save survey/tests/check.R survey/tests/caleg.Rout.save survey/tests/caleg.R survey/tests/bycovmat.Rout.save survey/tests/bycovmat.R survey/tests/badcal.Rout.save survey/tests/badcal.R survey/tests/api.Rout.save survey/tests/api.R survey/tests/README survey/tests/DBIcheck.Rout.save survey/tests/DBIcheck.R survey/man/ survey/man/withReplicates.Rd survey/man/with.svyimputationList.Rd survey/man/weights.survey.design.Rd survey/man/update.survey.design.Rd survey/man/twophase.Rd survey/man/trimWeights.Rd survey/man/svyttest.Rd survey/man/svystandardize.Rd survey/man/svysmooth.Rd survey/man/svyrecvar.Rd survey/man/svyratio.Rd survey/man/svyranktest.Rd survey/man/svyquantile.Rd survey/man/svyprcomp.Rd survey/man/svyplot.Rd survey/man/svyolr.Rd survey/man/svymle.Rd survey/man/svylogrank.Rd survey/man/svyloglin.Rd survey/man/svykm.Rd survey/man/svykappa.Rd survey/man/svyhist.Rd survey/man/svyglm.Rd survey/man/svyfactanal.Rd survey/man/svydesign.Rd survey/man/svycoxph.Rd survey/man/svycoplot.Rd survey/man/svycontrast.Rd survey/man/svyciprop.Rd survey/man/svychisq.Rd survey/man/svycdf.Rd survey/man/svyby.Rd survey/man/svyCprod.Rd survey/man/svy.varcoef.Rd survey/man/svrepdesign.Rd survey/man/svrVar.Rd survey/man/surveysummary.Rd survey/man/surveyoptions.Rd survey/man/subset.survey.design.Rd survey/man/stratsample.Rd survey/man/scd.Rd survey/man/regTermTest.Rd survey/man/rake.Rd survey/man/postStratify.Rd survey/man/pchisqsum.Rd survey/man/paley.Rd survey/man/open.DBIsvydesign.Rd survey/man/nonresponse.Rd survey/man/nhanes.Rd survey/man/mu284.Rd survey/man/marginpred.Rd survey/man/make.calfun.Rd survey/man/hospital.Rd survey/man/hadamard.Rd survey/man/ftable.svystat.Rd survey/man/fpc.Rd survey/man/estweights.Rd survey/man/election.Rd survey/man/dimnames.DBIsvydesign.Rd survey/man/crowd.Rd survey/man/confint.svyglm.Rd survey/man/compressWeights.Rd survey/man/calibrate.Rd survey/man/brrweights.Rd survey/man/bootweights.Rd survey/man/barplot.svystat.Rd survey/man/as.svydesign2.Rd survey/man/as.svrepdesign.Rd survey/man/as.fpc.Rd survey/man/api.Rd survey/man/anova.svyglm.Rd survey/man/SE.Rd survey/man/HR.Rd survey/inst/ survey/inst/ucla-examples.pdf survey/inst/twostage.pdf survey/inst/porting.to.S survey/inst/doc/ survey/inst/doc/survey.pdf survey/inst/doc/survey.Rnw survey/inst/doc/survey.R survey/inst/doc/pps.pdf survey/inst/doc/pps.Rnw survey/inst/doc/pps.R survey/inst/doc/phase1.pdf survey/inst/doc/phase1.Rnw survey/inst/doc/phase1.R survey/inst/doc/nwts.rda survey/inst/doc/nwtco-subcohort.rda survey/inst/doc/epi.pdf survey/inst/doc/epi.Rnw survey/inst/doc/epi.R survey/inst/doc/domain.pdf survey/inst/doc/domain.Rnw survey/inst/doc/domain.R survey/inst/disclaimer survey/inst/api.db survey/inst/NEWS survey/inst/COPYING survey/inst/CITATION survey/inst/BUGS survey/data/ survey/data/scd.rda survey/data/nhanes.rda survey/data/mu284.rda survey/data/hospital.rda survey/data/fpc.rda survey/data/election.rda survey/data/crowd.rda survey/data/api.rda survey/TODO survey/THANKS survey/R/ survey/R/weightconstruction.R survey/R/twophase2.R survey/R/twophase.R survey/R/transform.R survey/R/sysdata.rda survey/R/svyttest.R survey/R/svysmooth.R survey/R/svyranktest.R survey/R/svymi.R survey/R/svykm.R survey/R/svykappa.R survey/R/svyhist.R survey/R/svycdf.R survey/R/surveyrep.R survey/R/surveygraph.R survey/R/surveychisq.R survey/R/surveyby.R survey/R/survey.R survey/R/stratsample.R survey/R/stdize.R survey/R/regtest.R survey/R/pps.R survey/R/paley.R survey/R/pFsum.R survey/R/olr.R survey/R/odbc.R survey/R/multivariate.R survey/R/multistage.R survey/R/mse.R survey/R/mrb.R survey/R/margins.R survey/R/logrank.R survey/R/loglin.R survey/R/ht.R survey/R/greg.R survey/R/grake.R survey/R/ftable.svystat.R survey/R/dbiupdate.R survey/R/count.R survey/R/confint.R survey/R/compressweights.R survey/R/chisqsum.R survey/R/bootstrap.R survey/R/anova.svyglm.R survey/R/DBI.R survey/NAMESPACE survey/INDEX survey/DESCRIPTION sudo -u fink-bld [ENV] sh -c /tmp/fink.o668q /tmp/fink.XKOkS #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-survey-r30-3.29-5-1/survey/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R pushd .. /sw/build.build/cran-survey-r30-3.29-5-1 /sw/build.build/cran-survey-r30-3.29-5-1/survey if [[ 3.0 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes survey else $BIN_R --verbose CMD build --no-vignettes survey fi * checking for file 'survey/DESCRIPTION' ... OK * preparing 'survey': * checking DESCRIPTION meta-information ... OK * checking whether 'INDEX' is up-to-date ... NO * use '--force' to remove the existing 'INDEX' * checking for LF line-endings in source and make files * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added * building 'survey_3.29-5.tar.gz' /bin/rm -rf /sw/build.build/root-cran-survey-r30-3.29-5-1 /bin/mkdir -p /sw/build.build/root-cran-survey-r30-3.29-5-1/sw /bin/mkdir -p /sw/build.build/root-cran-survey-r30-3.29-5-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-survey-r30-3.29-5-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.X_wH3 /tmp/fink.kD5zW #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R mkdir -p /sw/build.build/root-cran-survey-r30-3.29-5-1/sw/lib/R/3.0/site-library pushd /sw/build.build/cran-survey-r30-3.29-5-1/survey/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-survey-r30-3.29-5-1/sw/lib/R/3.0/site-library survey /sw/build.build/cran-survey-r30-3.29-5-1 /sw/build.build/cran-survey-r30-3.29-5-1/survey * installing *source* package 'survey' ... ** package 'survey' successfully unpacked and MD5 sums checked ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (survey) sudo -u fink-bld [ENV] sh -c /tmp/fink.BKd7m /bin/rm -f /sw/build.build/root-cran-survey-r30-3.29-5-1/sw/info/dir /sw/build.build/root-cran-survey-r30-3.29-5-1/sw/info/dir.old /sw/build.build/root-cran-survey-r30-3.29-5-1/sw/share/info/dir /sw/build.build/root-cran-survey-r30-3.29-5-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-survey-r30-3.29-5-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-survey-r30' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-survey-r30_3.29-5-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-survey-r30-3.29-5-1 (Reading database ... 19239 files and directories currently installed.) Removing fink-buildlock-cran-survey-r30-3.29-5-1 ...