printf '

' | fink --no-use-binary-dist --yes  --build-as-nobody rebuild cran-survival-r31 2>&1
The package 'cran-survival-r31' will be built without being installed.
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The package 'r-base31-dev' will be installed.
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The package 'libgettext8-dev' will be installed.
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The package 'r-base31' will be installed.
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The package 'r-base31-shlibs' will be installed.
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The package 'gettext-bin' will be installed.
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The package 'flag-sort' will be installed.
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The package 'cairo-shlibs' will be installed.
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The package 'libtiff5-shlibs' will be installed.
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The package 'pango1-xft2-ft219-shlibs' will be installed.
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The package 'libpcre1-shlibs' will be installed.
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The package 'readline6-shlibs' will be installed.
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The package 'tcltk' will be installed.
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The package 'fontconfig2-shlibs' will be installed.
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The package 'freetype219-shlibs' will be installed.
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The package 'xdg-base' will be installed.
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The package 'libjbig-shlibs' will be installed.
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The package 'libthai-shlibs' will be installed.
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The package 'xft2-shlibs' will be installed.
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The package 'fontconfig-config' will be installed.
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The following package will be rebuilt:
 cran-survival-r31
The following 30 additional packages will be installed:
 cairo-shlibs expat1-shlibs flag-sort fontconfig-config fontconfig2-shlibs
 freetype219-shlibs gcc49-shlibs gettext-bin glib2-shlibs libdatrie1-shlibs
 libgettext8-dev libicu48-shlibs libjbig-shlibs libjpeg9-shlibs
 liblzma5-shlibs libpcre1-shlibs libpng16-shlibs libthai libthai-shlibs
 libtiff5-shlibs pango1-xft2-ft219-shlibs pixman-shlibs r-base31 r-base31-dev
 r-base31-shlibs readline6-shlibs tcltk tcltk-shlibs xdg-base xft2-shlibs
Do you want to continue? [Y/n] (assuming default)
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dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-survival-r31-2.37-7-2 /sw/build.build
dpkg-deb: building package `fink-buildlock-cran-survival-r31-2.37-7-2' in `/sw/build.build/fink-buildlock-cran-survival-r31-2.37-7-2_2014.07.27-10.10.51_darwin-x86_64.deb'.
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sudo -u fink-bld [ENV] sh -c /tmp/fink.Qmhpm
env LANG=C LC_ALL=C /sw/bin/tar  --no-same-owner --no-same-permissions -xvf /sw/src/survival_2.37-7.tar.gz
survival/
survival/inst/
survival/inst/CITATION
survival/inst/NEWS.Rd
survival/inst/COPYRIGHTS
survival/inst/doc/
survival/inst/doc/adjcurve.Rnw
survival/inst/doc/tests.pdf
survival/inst/doc/timedep.R
survival/inst/doc/adjcurve.pdf
survival/inst/doc/validate.pdf
survival/inst/doc/tests.Rnw
survival/inst/doc/adjcurve.R
survival/inst/doc/timedep.Rnw
survival/inst/doc/timedep.pdf
survival/inst/doc/sourcecode.pdf
survival/inst/doc/tests.R
survival/tests/
survival/tests/singtest.Rout.save
survival/tests/anova.R
survival/tests/model.matrix.Rout.save
survival/tests/expected.Rout.save
survival/tests/factor2.Rout.save
survival/tests/strata2.Rout.save
survival/tests/r_capacitor.R
survival/tests/fr_cancer.Rout.save
survival/tests/data.rat2
survival/tests/quantile.R
survival/tests/fr_ovarian.Rout.save
survival/tests/difftest.Rout.save
survival/tests/turnbull.Rout.save
survival/tests/aareg.R
survival/tests/jasa.R
survival/tests/model.matrix.R
survival/tests/fr_simple.R
survival/tests/difftest.R
survival/tests/ovarian.R
survival/tests/quantile.Rout.save
survival/tests/cancer.Rout.save
survival/tests/r_peterson.R
survival/tests/rounding.Rout.save
survival/tests/r_capacitor.Rout.save
survival/tests/summary_survfit.R
survival/tests/data.interval
survival/tests/testnull.Rout.save
survival/tests/bladder.R
survival/tests/stratatest.Rout.save
survival/tests/gray1.rda
survival/tests/strata2.R
survival/tests/rounding.R
survival/tests/r_tdist.R
survival/tests/frank.R
survival/tests/expected2.R
survival/tests/concordance.R
survival/tests/book4.R
survival/tests/turnbull.R
survival/tests/coxsurv4.Rout.save
survival/tests/r_strata.Rout.save
survival/tests/r_strata.R
survival/tests/book4.Rout.save
survival/tests/r_tdist.Rout.save
survival/tests/jasa.Rout.save
survival/tests/book6.R
survival/tests/data.motor
survival/tests/fr_resid.R
survival/tests/testci.R
survival/tests/coxsurv.Rout.save
survival/tests/r_user.Rout.save
survival/tests/tiedtime.R
survival/tests/r_sas.Rout.save
survival/tests/r_resid.R
survival/tests/fr_lung.R
survival/tests/pspline.R
survival/tests/book6.Rout.save
survival/tests/anova.Rout.save
survival/tests/testci2.Rout.save
survival/tests/prednew.R
survival/tests/survreg2.Rout.save
survival/tests/survfit2.Rout.save
survival/tests/fr_rat1.Rout.save
survival/tests/survreg2.R
survival/tests/book3.R
survival/tests/book1.Rout.save
survival/tests/nested.R
survival/tests/book1.R
survival/tests/fr_kidney.R
survival/tests/r_sas.R
survival/tests/fr_ovarian.R
survival/tests/survtest.R
survival/tests/mrtest.R
survival/tests/r_stanford.Rout.save
survival/tests/clogit.R
survival/tests/factor.R
survival/tests/book7.Rout.save
survival/tests/r_donnell.R
survival/tests/book2.Rout.save
survival/tests/testreg.Rout.save
survival/tests/doaml.R
survival/tests/coxsurv2.R
survival/tests/r_donnell.Rout.save
survival/tests/prednew.Rout.save
survival/tests/r_user.R
survival/tests/ratetable.Rout.save
survival/tests/book2.R
survival/tests/r_scale.R
survival/tests/tt.Rout.save
survival/tests/ovarian.Rout.save
survival/tests/fr_kidney.Rout.save
survival/tests/singtest.R
survival/tests/data.cracks
survival/tests/testci2.R
survival/tests/fr_rat2.Rout.save
survival/tests/testnull.R
survival/tests/fr_cancer.R
survival/tests/coxsurv4.R
survival/tests/coxsurv3.Rout.save
survival/tests/data.valve
survival/tests/survtest.Rout.save
survival/tests/factor2.R
survival/tests/ratetable.R
survival/tests/data.donnell
survival/tests/nested.Rout.save
survival/tests/fr_simple.Rout.save
survival/tests/r_scale.Rout.save
survival/tests/fr_rat1.R
survival/tests/book5.Rout.save
survival/tests/r_lung.R
survival/tests/detail.Rout.save
survival/tests/expected2.Rout.save
survival/tests/bladder.Rout.save
survival/tests/infcox.Rout.save
survival/tests/data.capacitor
survival/tests/ties.rda
survival/tests/coxsurv2.Rout.save
survival/tests/surv.Rout.save
survival/tests/doaml.Rout.save
survival/tests/r_resid.Rout.save
survival/tests/pspline.Rout.save
survival/tests/clogit.Rout.save
survival/tests/summary_survfit.Rout.save
survival/tests/book3.Rout.save
survival/tests/frank.Rout.save
survival/tests/r_stanford.R
survival/tests/infcox.R
survival/tests/cancer.R
survival/tests/detail.R
survival/tests/fr_rat2.R
survival/tests/data.peterson
survival/tests/frailty.Rout.save
survival/tests/counting.R
survival/tests/testci.Rout.save
survival/tests/data.fluid
survival/tests/r_lung.Rout.save
survival/tests/r_peterson.Rout.save
survival/tests/mrtest.Rout.save
survival/tests/aareg.Rout.save
survival/tests/surv.R
survival/tests/factor.Rout.save
survival/tests/pyear.R
survival/tests/fr_resid.Rout.save
survival/tests/frailty.R
survival/tests/counting.Rout.save
survival/tests/tt.R
survival/tests/fr_lung.Rout.save
survival/tests/testreg.R
survival/tests/book5.R
survival/tests/data.smoke
survival/tests/concordance.Rout.save
survival/tests/pyear.Rout.save
survival/tests/stratatest.R
survival/tests/survfit2.R
survival/tests/doweight.R
survival/tests/tiedtime.Rout.save
survival/tests/coxsurv3.R
survival/tests/r_sas.R.orig
survival/tests/book7.R
survival/tests/data.turbine
survival/tests/coxsurv.R
survival/tests/doweight.Rout.save
survival/tests/expected.R
survival/src/
survival/src/pystep.c
survival/src/survfit4.c
survival/src/coxcount1.c
survival/src/chinv2.c
survival/src/pyears3b.c
survival/src/msurv.c
survival/src/survS.h
survival/src/chsolve2.c
survival/src/survproto.h
survival/src/agmart2.c
survival/src/survregc2.c
survival/src/coxexact.c
survival/src/survdiff2.c
survival/src/pyears1.c
survival/src/coxmart2.c
survival/src/coxfit5.c
survival/src/agfit4.c
survival/src/survreg6.c
survival/src/agscore.c
survival/src/survpenal.c
survival/src/concordance1.c
survival/src/coxmart.c
survival/src/agsurv4.c
survival/src/cox_Rcallback.c
survival/src/coxfit6.c
survival/src/cholesky2.c
survival/src/agsurv5.c
survival/src/chsolve3.c
survival/src/coxph_wtest.c
survival/src/pyears2.c
survival/src/coxdetail.c
survival/src/agsurv3.c
survival/src/coxscho.c
survival/src/agexact.c
survival/src/survregc1.c
survival/src/doloop.c
survival/src/survfitci.c
survival/src/init.c
survival/src/survConcordance.c
survival/src/agfit5.c
survival/src/cholesky3.c
survival/src/coxscore.c
survival/src/coxsafe.c
survival/src/dmatrix.c
survival/src/chinv3.c
survival/src/agmart.c
survival/src/survreg7.c
survival/NAMESPACE
survival/data/
survival/data/rats.rda
survival/data/ovarian.rda
survival/data/flchain.rda
survival/data/pbc.rda
survival/data/veteran.rda
survival/data/leukemia.rda
survival/data/bladder.rda
survival/data/survexp.rda
survival/data/cgd.rda
survival/data/mgus.rda
survival/data/nwtco.rda
survival/data/logan.rda
survival/data/datalist
survival/data/cancer.rda
survival/data/tobin.txt.gz
survival/data/lung.rda
survival/data/stanford2.rda
survival/data/kidney.rda
survival/data/heart.rda
survival/data/colon.rda
survival/data/uspop2.rda
survival/R/
survival/R/survreg.control.S
survival/R/print.summary.coxph.S
survival/R/print.coxph.penal.S
survival/R/survreg.old.S
survival/R/summary.coxph.S
survival/R/summary.pyears.S
survival/R/residuals.survreg.penal.S
survival/R/frailty.gaussian.S
survival/R/survpenal.fit.S
survival/R/tcut.S
survival/R/print.coxph.S
survival/R/survSplit.R
survival/R/print.aareg.S
survival/R/plot.aareg.S
survival/R/print.survexp.S
survival/R/cox.zph.S
survival/R/survregDtest.S
survival/R/survdiff.S
survival/R/coxph.fit.S
survival/R/coxph.control.S
survival/R/frailty.controlgam.S
survival/R/anova.survreglist.S
survival/R/survfitms.R
survival/R/predict.survreg.S
survival/R/print.survfit.S
survival/R/predict.coxph.R
survival/R/anova.coxmelist.R
survival/R/model.matrix.coxph.R
survival/R/print.survreg.S
survival/R/coxph.detail.S
survival/R/residuals.coxph.null.S
survival/R/model.frame.survreg.R
survival/R/survreg.S
survival/R/summary.coxph.penal.S
survival/R/frailty.brent.S
survival/R/plot.cox.zph.S
survival/R/survexp.fit.S
survival/R/coxph.rvar.S
survival/R/print.coxph.null.S
survival/R/ratetableDate.S
survival/R/anova.survreg.S
survival/R/survexp.cfit.R
survival/R/frailty.t.S
survival/R/residuals.coxph.S
survival/R/basehaz.S
survival/R/is.ratetable.S
survival/R/survobrien.S
survival/R/print.ratetable.S
survival/R/summary.ratetable.S
survival/R/agsurv.R
survival/R/untangle.specials.S
survival/R/match.ratetable.S
survival/R/ridge.S
survival/R/clogit.R
survival/R/survexp.R
survival/R/pyears.R
survival/R/summary.survreg.S
survival/R/coxph.wtest.S
survival/R/survcallback.S
survival/R/Surv.S
survival/R/is.na.coxph.penalty.S
survival/R/pspline.S
survival/R/survfitCI.R
survival/R/quantile.survfit.R
survival/R/ratetable.S
survival/R/cluster.S
survival/R/aareg.taper.S
survival/R/coxexact.fit.R
survival/R/lines.survexp.R
survival/R/plot.survfit.R
survival/R/survfitKM.S
survival/R/survConcordance.R
survival/R/frailty.controlaic.S
survival/R/strata.S
survival/R/survfit.R
survival/R/predict.survreg.penal.S
survival/R/coxph.getdata.S
survival/R/frailty.controlgauss.S
survival/R/print.survreg.penal.S
survival/R/survreg.fit.S
survival/R/survreg.distributions.S
survival/R/summary.aareg.S
survival/R/predict.coxph.penal.S
survival/R/frailty.gamma.S
survival/R/survConcordance.fit.R
survival/R/print.survdiff.S
survival/R/lines.survfit.coxph.S
survival/R/coxph.R
survival/R/agexact.fit.S
survival/R/print.summary.survexp.R
survival/R/summary.survexp.R
survival/R/survfitcoxph.fit.R
survival/R/frailty.S
survival/R/residuals.survreg.S
survival/R/format.Surv.S
survival/R/survfit.formula.S
survival/R/logLik.coxph.R
survival/R/lines.aareg.S
survival/R/print.summary.survfitms.S
survival/R/aareg.S
survival/R/cch.R
survival/R/frailty.controldf.S
survival/R/agreg.fit.R
survival/R/print.summary.survreg.S
survival/R/coxpenal.df.S
survival/R/firstlib.R
survival/R/survfitTurnbull.S
survival/R/survdiff.fit.S
survival/R/print.summary.coxph.penal.S
survival/R/print.summary.survfit.S
survival/R/dsurvreg.S
survival/R/anova.coxphlist.S
survival/R/survfit.coxph.R
survival/R/frailty.gammacon.S
survival/R/anova.coxph.S
survival/R/xtras.R
survival/R/print.cox.zph.S
survival/R/labels.survreg.S
survival/R/coxpenal.fit.R
survival/R/residuals.coxph.penal.S
survival/R/attrassign.R
survival/vignettes/
survival/vignettes/adjcurve.Rnw
survival/vignettes/raheart.rda
survival/vignettes/refer.bib
survival/vignettes/tests.Rnw
survival/vignettes/timedep.Rnw
survival/MD5
survival/build/
survival/build/vignette.rds
survival/DESCRIPTION
survival/man/
survival/man/survexp.Rd
survival/man/survreg.control.Rd
survival/man/lines.survfit.Rd
survival/man/print.summary.survfit.Rd
survival/man/colon.Rd
survival/man/survreg.distributions.Rd
survival/man/attrassign.Rd
survival/man/rats2.Rd
survival/man/rats.Rd
survival/man/survreg.Rd
survival/man/uspop2.Rd
survival/man/survfitcoxph.fit.Rd
survival/man/ratetable.Rd
survival/man/residuals.survreg.Rd
survival/man/print.survfit.Rd
survival/man/summary.survexp.Rd
survival/man/survdiff.Rd
survival/man/bladder.Rd
survival/man/pbcseq.Rd
survival/man/frailty.Rd
survival/man/print.summary.coxph.Rd
survival/man/cluster.Rd
survival/man/tobin.Rd
survival/man/is.ratetable.Rd
survival/man/survexp.fit.Rd
survival/man/ovarian.Rd
survival/man/anova.coxph.Rd
survival/man/summary.survfit.Rd
survival/man/quantile.survfit.Rd
survival/man/flchain.Rd
survival/man/survival-internal.Rd
survival/man/survfit.formula.Rd
survival/man/ridge.Rd
survival/man/survregDtest.Rd
survival/man/predict.survreg.Rd
survival/man/survConcordance.Rd
survival/man/model.frame.coxph.Rd
survival/man/coxph.detail.Rd
survival/man/agreg.fit.Rd
survival/man/strata.Rd
survival/man/stanford2.Rd
survival/man/lung.Rd
survival/man/survreg.object.Rd
survival/man/untangle.specials.Rd
survival/man/summary.aareg.Rd
survival/man/survexp.us.Rd
survival/man/ratetableDate.Rd
survival/man/predict.coxph.Rd
survival/man/cgd.Rd
survival/man/plot.survfit.Rd
survival/man/summary.coxph.Rd
survival/man/mgus.Rd
survival/man/kidney.Rd
survival/man/survfit.object.Rd
survival/man/pspline.Rd
survival/man/pyears.Rd
survival/man/nwtco.Rd
survival/man/survfit.Rd
survival/man/model.matrix.coxph.Rd
survival/man/plot.aareg.Rd
survival/man/coxph.Rd
survival/man/survfit.coxph.Rd
survival/man/residuals.coxph.Rd
survival/man/coxph.control.Rd
survival/man/cox.zph.Rd
survival/man/print.summary.survexp.Rd
survival/man/tcut.Rd
survival/man/aml.Rd
survival/man/pbc.Rd
survival/man/Surv.Rd
survival/man/coxph.object.Rd
survival/man/veteran.Rd
survival/man/coxph.wtest.Rd
survival/man/survobrien.Rd
survival/man/basehaz.Rd
survival/man/aareg.Rd
survival/man/plot.cox.zph.Rd
survival/man/dsurvreg.Rd
survival/man/survSplit.Rd
survival/man/clogit.Rd
survival/man/print.aareg.Rd
survival/man/logan.Rd
survival/man/cch.Rd
survival/man/heart.Rd
sudo -u fink-bld [ENV] sh -c /tmp/fink.kEWPS
/tmp/fink.ZsKM6
#!/bin/sh -ev
  export TMPDIR=/sw/build.build/cran-survival-r31-2.37-7-2/survival/tmp
  BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R
  
  pushd ..
/sw/build.build/cran-survival-r31-2.37-7-2 /sw/build.build/cran-survival-r31-2.37-7-2/survival
  if [[ 3.1 > 2.15 ]]; then
    $BIN_R --verbose CMD build --no-build-vignettes survival
  else
    $BIN_R --verbose CMD build --no-vignettes survival
  fi
* checking for file 'survival/DESCRIPTION' ... OK
* preparing 'survival':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking vignette meta-information ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* looking to see if a 'data/datalist' file should be added
* building 'survival_2.37-7.tar.gz'

/bin/rm -rf /sw/build.build/root-cran-survival-r31-2.37-7-2
/bin/mkdir -p /sw/build.build/root-cran-survival-r31-2.37-7-2/sw
/bin/mkdir -p /sw/build.build/root-cran-survival-r31-2.37-7-2/DEBIAN
/usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-survival-r31-2.37-7-2
sudo -u fink-bld [ENV] sh -c /tmp/fink.fAyp1
/tmp/fink.5JZpO
#!/bin/sh -ev
  BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R
  
  mkdir -p /sw/build.build/root-cran-survival-r31-2.37-7-2/sw/lib/R/3.1/site-library
  pushd /sw/build.build/cran-survival-r31-2.37-7-2/survival/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-survival-r31-2.37-7-2/sw/lib/R/3.1/site-library survival
/sw/build.build/cran-survival-r31-2.37-7-2 /sw/build.build/cran-survival-r31-2.37-7-2/survival
* installing *source* package 'survival' ...
** package 'survival' successfully unpacked and MD5 sums checked
** libs
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c agexact.c -o agexact.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c agfit4.c -o agfit4.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c agfit5.c -o agfit5.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c agmart.c -o agmart.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c agmart2.c -o agmart2.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c agscore.c -o agscore.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c agsurv3.c -o agsurv3.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c agsurv4.c -o agsurv4.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c agsurv5.c -o agsurv5.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c chinv2.c -o chinv2.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c chinv3.c -o chinv3.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c cholesky2.c -o cholesky2.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c cholesky3.c -o cholesky3.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c chsolve2.c -o chsolve2.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c chsolve3.c -o chsolve3.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c concordance1.c -o concordance1.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c cox_Rcallback.c -o cox_Rcallback.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c coxcount1.c -o coxcount1.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c coxdetail.c -o coxdetail.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c coxexact.c -o coxexact.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c coxfit5.c -o coxfit5.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c coxfit6.c -o coxfit6.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c coxmart.c -o coxmart.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c coxmart2.c -o coxmart2.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c coxph_wtest.c -o coxph_wtest.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c coxsafe.c -o coxsafe.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c coxscho.c -o coxscho.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c coxscore.c -o coxscore.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c dmatrix.c -o dmatrix.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c doloop.c -o doloop.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c init.c -o init.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c msurv.c -o msurv.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c pyears1.c -o pyears1.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c pyears2.c -o pyears2.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c pyears3b.c -o pyears3b.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c pystep.c -o pystep.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c survConcordance.c -o survConcordance.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c survdiff2.c -o survdiff2.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c survfit4.c -o survfit4.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c survfitci.c -o survfitci.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c survpenal.c -o survpenal.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c survreg6.c -o survreg6.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c survreg7.c -o survreg7.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c survregc1.c -o survregc1.o
flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/include -DNDEBUG  -I/sw/include    -fPIC  -g -O3  -c survregc2.c -o survregc2.o
flag-sort -r gcc -ffor-scope -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib -o survival.dylib agexact.o agfit4.o agfit5.o agmart.o agmart2.o agscore.o agsurv3.o agsurv4.o agsurv5.o chinv2.o chinv3.o cholesky2.o cholesky3.o chsolve2.o chsolve3.o concordance1.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore.o dmatrix.o doloop.o init.o msurv.o pyears1.o pyears2.o pyears3b.o pystep.o survConcordance.o survdiff2.o survfit4.o survfitci.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o -L/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation
installing to /sw/build.build/root-cran-survival-r31-2.37-7-2/sw/lib/R/3.1/site-library/survival/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (survival)
  install_name_tool -id /sw/lib/R/3.1/site-library/survival/libs/survival.dylib /sw/build.build/root-cran-survival-r31-2.37-7-2/sw/lib/R/3.1/site-library/survival/libs/survival.dylib
sudo -u fink-bld [ENV] sh -c /tmp/fink.mDCNY
/bin/rm -f /sw/build.build/root-cran-survival-r31-2.37-7-2/sw/info/dir /sw/build.build/root-cran-survival-r31-2.37-7-2/sw/info/dir.old /sw/build.build/root-cran-survival-r31-2.37-7-2/sw/share/info/dir /sw/build.build/root-cran-survival-r31-2.37-7-2/sw/share/info/dir.old
Reverting ownership of install dir to root
Writing control file...
Creating shlibs files...
Writing md5sums file...
env LANG=C LC_ALL=C dpkg-deb -b root-cran-survival-r31-2.37-7-2 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods
dpkg-deb: building package `cran-survival-r31' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-survival-r31_2.37-7-2_darwin-x86_64.deb'.
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-cran-survival-r31-2.37-7-2
(Reading database ... 7372 files and directories currently installed.)
Removing fink-buildlock-cran-survival-r31-2.37-7-2 ...