printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-titan-r31 2>&1 The package 'cran-titan-r31' will be built without being installed. Reading build dependency for cran-titan-r31-1.0-16-2... Reading dependency for cran-titan-r31-1.0-16-2... Reading build conflict for cran-titan-r31-1.0-16-2... The package 'r-base31-dev' will be installed. Reading dependency for r-base31-dev-3.1.1-2... Reading runtime dependency for r-base31-dev-3.1.1-2... The package 'xvfb-run' will be installed. Reading dependency for xvfb-run-1.4.2-3... Reading runtime dependency for xvfb-run-1.4.2-3... The package 'r-base31' will be installed. Reading dependency for r-base31-3.1.1-2... Reading runtime dependency for r-base31-3.1.1-2... The package 'cran-boot-r31' will be installed. Reading dependency for cran-boot-r31-1.3-11-1... Reading runtime dependency for cran-boot-r31-1.3-11-1... The package 'cran-lattice-r31' will be installed. Reading dependency for cran-lattice-r31-0.20-29-2... Reading runtime dependency for cran-lattice-r31-0.20-29-2... The package 'cran-mass-r31' will be installed. Reading dependency for cran-mass-r31-7.3-32-2... Reading runtime dependency for cran-mass-r31-7.3-32-2... The package 'r-base31-shlibs' will be installed. Reading dependency for r-base31-shlibs-3.1.1-2... Reading runtime dependency for r-base31-shlibs-3.1.1-2... The package 'getoptbin' will be installed. Reading dependency for getoptbin-1.1.4-3... Reading runtime dependency for getoptbin-1.1.4-3... The following package will be rebuilt: cran-titan-r31 The following 8 additional packages will be installed: cran-boot-r31 cran-lattice-r31 cran-mass-r31 getoptbin r-base31 r-base31-dev r-base31-shlibs xvfb-run Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/titan_1.0-16.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 3 34758 3 1207 0 0 3507 0 0:00:09 --:--:-- 0:00:09 3498 100 34758 100 34758 0 0 77369 0 --:--:-- --:--:-- --:--:-- 77240 Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/getoptbin_1.1.4-3_darwin-x86_64.deb Selecting previously deselected package getoptbin. (Reading database ... 7418 files and directories currently installed.) Unpacking getoptbin (from .../getoptbin_1.1.4-3_darwin-x86_64.deb) ... Setting up getoptbin (1.1.4-3) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base31_3.1.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base31-shlibs_3.1.1-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base31-dev_3.1.1-2_darwin-x86_64.deb Selecting previously deselected package r-base31. (Reading database ... 7428 files and directories currently installed.) Unpacking r-base31 (from .../r-base31_3.1.1-2_darwin-x86_64.deb) ... Selecting previously deselected package r-base31-shlibs. Unpacking r-base31-shlibs (from .../r-base31-shlibs_3.1.1-2_darwin-x86_64.deb) ... Selecting previously deselected package r-base31-dev. dpkg: considering removing r-base30-dev in favour of r-base31-dev ... dpkg: yes, will remove r-base30-dev in favour of r-base31-dev. Unpacking r-base31-dev (from .../r-base31-dev_3.1.1-2_darwin-x86_64.deb) ... Setting up r-base31-shlibs (3.1.1-2) ... Setting up r-base31-dev (3.1.1-2) ... Setting up r-base31 (3.1.1-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/xvfb-run_1.4.2-3_darwin-x86_64.deb Selecting previously deselected package xvfb-run. (Reading database ... 9346 files and directories currently installed.) Unpacking xvfb-run (from .../xvfb-run_1.4.2-3_darwin-x86_64.deb) ... Setting up xvfb-run (1.4.2-3) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/cran-boot-r31_1.3-11-1_darwin-x86_64.deb Selecting previously deselected package cran-boot-r31. (Reading database ... 9350 files and directories currently installed.) Unpacking cran-boot-r31 (from .../cran-boot-r31_1.3-11-1_darwin-x86_64.deb) ... Setting up cran-boot-r31 (1.3-11-1) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/cran-lattice-r31_0.20-29-2_darwin-x86_64.deb Selecting previously deselected package cran-lattice-r31. (Reading database ... 9401 files and directories currently installed.) Unpacking cran-lattice-r31 (from .../cran-lattice-r31_0.20-29-2_darwin-x86_64.deb) ... Setting up cran-lattice-r31 (0.20-29-2) ... Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/cran-mass-r31_7.3-32-2_darwin-x86_64.deb Selecting previously deselected package cran-mass-r31. (Reading database ... 9455 files and directories currently installed.) Unpacking cran-mass-r31 (from .../cran-mass-r31_7.3-32-2_darwin-x86_64.deb) ... Setting up cran-mass-r31 (7.3-32-2) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-titan-r31-1.0-16-2 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-titan-r31-1.0-16-2' in `/sw/build.build/fink-buildlock-cran-titan-r31-1.0-16-2_2014.07.31-21.42.00_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-titan-r31-1.0-16-2_2014.07.31-21.42.00_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-titan-r31-1.0-16-2. (Reading database ... 9520 files and directories currently installed.) Unpacking fink-buildlock-cran-titan-r31-1.0-16-2 (from .../fink-buildlock-cran-titan-r31-1.0-16-2_2014.07.31-21.42.00_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-titan-r31-1.0-16-2 (2014.07.31-21.42.00) ... sudo -u fink-bld [ENV] sh -c /tmp/fink._781k env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/titan_1.0-16.tar.gz titan/ titan/data/ titan/data/hypoxia.RData titan/INDEX titan/CONTENTS titan/NAMESPACE titan/Changes titan/man/ titan/man/titan.Rd titan/man/hypoxia.Rd titan/DESCRIPTION titan/MD5 titan/R/ titan/R/titan.R sudo -u fink-bld [ENV] sh -c /tmp/fink.aegfz /tmp/fink.hmr3p #!/bin/bash -ev export TMPDIR=/sw/build.build/cran-titan-r31-1.0-16-2/titan/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R pushd .. /sw/build.build/cran-titan-r31-1.0-16-2 /sw/build.build/cran-titan-r31-1.0-16-2/titan $BIN_R --verbose CMD build --no-build-vignettes titan * checking for file 'titan/DESCRIPTION' ... OK * preparing 'titan': * checking DESCRIPTION meta-information ... OK * checking whether 'INDEX' is up-to-date ... OK * checking for LF line-endings in source and make files * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added * building 'titan_1.0-16.tar.gz' /bin/rm -rf /sw/build.build/root-cran-titan-r31-1.0-16-2 /bin/mkdir -p /sw/build.build/root-cran-titan-r31-1.0-16-2/sw /bin/mkdir -p /sw/build.build/root-cran-titan-r31-1.0-16-2/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-titan-r31-1.0-16-2 sudo -u fink-bld [ENV] sh -c /tmp/fink.2NBxO /tmp/fink.bHtE3 #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.1/Resources/bin/R mkdir -p /sw/build.build/root-cran-titan-r31-1.0-16-2/sw/lib/R/3.1/site-library pushd /sw/build.build/cran-titan-r31-1.0-16-2/titan/.. && `which xvfb-run` $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-titan-r31-1.0-16-2/sw/lib/R/3.1/site-library titan /sw/build.build/cran-titan-r31-1.0-16-2 /sw/build.build/cran-titan-r31-1.0-16-2/titan which xvfb-run * installing *source* package 'titan' ... ** package 'titan' successfully unpacked and MD5 sums checked ** R ** data ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (titan) sudo -u fink-bld [ENV] sh -c /tmp/fink.TKlZa /bin/rm -f /sw/build.build/root-cran-titan-r31-1.0-16-2/sw/info/dir /sw/build.build/root-cran-titan-r31-1.0-16-2/sw/info/dir.old /sw/build.build/root-cran-titan-r31-1.0-16-2/sw/share/info/dir /sw/build.build/root-cran-titan-r31-1.0-16-2/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-titan-r31-1.0-16-2 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-titan-r31' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-titan-r31_1.0-16-2_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-titan-r31-1.0-16-2 (Reading database ... 9521 files and directories currently installed.) Removing fink-buildlock-cran-titan-r31-1.0-16-2 ...