printf ' ' | fink --no-use-binary-dist --yes --build-as-nobody rebuild cran-xml-r30 2>&1 The package 'cran-xml-r30' will be built without being installed. Reading build dependency for cran-xml-r30-3.98-1.1-1... Reading dependency for cran-xml-r30-3.98-1.1-1... Reading build conflict for cran-xml-r30-3.98-1.1-1... The package 'r-base30-dev' will be installed. Reading dependency for r-base30-dev-3.0.3-8... Reading runtime dependency for r-base30-dev-3.0.3-8... The package 'libiconv-dev' will be installed. Reading dependency for libiconv-dev-1.14-5... Reading runtime dependency for libiconv-dev-1.14-5... The package 'libxml2' will be installed. Reading dependency for libxml2-2.9.1-3... Reading runtime dependency for libxml2-2.9.1-3... The package 'r-base30' will be installed. Reading dependency for r-base30-3.0.3-8... Reading runtime dependency for r-base30-3.0.3-8... The package 'libxml2-shlibs' will be installed. Reading dependency for libxml2-shlibs-2.9.1-3... Reading runtime dependency for libxml2-shlibs-2.9.1-3... The package 'r-base30-shlibs' will be installed. Reading dependency for r-base30-shlibs-3.0.3-8... Reading runtime dependency for r-base30-shlibs-3.0.3-8... The package 'libxml2-bin' will be installed. Reading dependency for libxml2-bin-2.9.1-3... Reading runtime dependency for libxml2-bin-2.9.1-3... The following package will be rebuilt: cran-xml-r30 The following 7 additional packages will be installed: libiconv-dev libxml2 libxml2-bin libxml2-shlibs r-base30 r-base30-dev r-base30-shlibs Do you want to continue? [Y/n] (assuming default) curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/XML_3.98-1.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 1545k 0 1204 0 0 4291 0 0:06:08 --:--:-- 0:06:08 4284 15 1545k 15 241k 0 0 152k 0 0:00:10 0:00:01 0:00:09 152k 44 1545k 44 688k 0 0 309k 0 0:00:04 0:00:02 0:00:02 309k 96 1545k 96 1494k 0 0 463k 0 0:00:03 0:00:03 --:--:-- 463k 100 1545k 100 1545k 0 0 472k 0 0:00:03 0:00:03 --:--:-- 472k Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/base/libiconv-dev_1.14-5_darwin-x86_64.deb Selecting previously deselected package libiconv-dev. (Reading database ... 9540 files and directories currently installed.) Unpacking libiconv-dev (from .../libiconv-dev_1.14-5_darwin-x86_64.deb) ... Setting up libiconv-dev (1.14-5) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/libxml2_2.9.1-3_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libxml2-shlibs_2.9.1-3_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libxml2-bin_2.9.1-3_darwin-x86_64.deb Selecting previously deselected package libxml2. (Reading database ... 9558 files and directories currently installed.) Unpacking libxml2 (from .../libxml2_2.9.1-3_darwin-x86_64.deb) ... Selecting previously deselected package libxml2-shlibs. Unpacking libxml2-shlibs (from .../libxml2-shlibs_2.9.1-3_darwin-x86_64.deb) ... Selecting previously deselected package libxml2-bin. Unpacking libxml2-bin (from .../libxml2-bin_2.9.1-3_darwin-x86_64.deb) ... Setting up libxml2-shlibs (2.9.1-3) ... Setting up libxml2-bin (2.9.1-3) ... Setting up libxml2 (2.9.1-3) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/debs/r-base30_3.0.3-8_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base30-shlibs_3.0.3-8_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/r-base30-dev_3.0.3-8_darwin-x86_64.deb Selecting previously deselected package r-base30. (Reading database ... 9926 files and directories currently installed.) Unpacking r-base30 (from .../r-base30_3.0.3-8_darwin-x86_64.deb) ... Selecting previously deselected package r-base30-shlibs. Unpacking r-base30-shlibs (from .../r-base30-shlibs_3.0.3-8_darwin-x86_64.deb) ... Selecting previously deselected package r-base30-dev. dpkg: considering removing r-base31-dev in favour of r-base30-dev ... dpkg: yes, will remove r-base31-dev in favour of r-base30-dev. Unpacking r-base30-dev (from .../r-base30-dev_3.0.3-8_darwin-x86_64.deb) ... Setting up r-base30-shlibs (3.0.3-8) ... Setting up r-base30-dev (3.0.3-8) ... Setting up r-base30 (3.0.3-8) ... Setting runtime build-lock... dpkg-deb -b /sw/build.build/root-fink-buildlock-cran-xml-r30-3.98-1.1-1 /sw/build.build dpkg-deb: building package `fink-buildlock-cran-xml-r30-3.98-1.1-1' in `/sw/build.build/fink-buildlock-cran-xml-r30-3.98-1.1-1_2014.07.27-08.34.37_darwin-x86_64.deb'. Installing build-lock package... /sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-cran-xml-r30-3.98-1.1-1_2014.07.27-08.34.37_darwin-x86_64.deb Selecting previously deselected package fink-buildlock-cran-xml-r30-3.98-1.1-1. (Reading database ... 11855 files and directories currently installed.) Unpacking fink-buildlock-cran-xml-r30-3.98-1.1-1 (from .../fink-buildlock-cran-xml-r30-3.98-1.1-1_2014.07.27-08.34.37_darwin-x86_64.deb) ... Setting up fink-buildlock-cran-xml-r30-3.98-1.1-1 (2014.07.27-08.34.37) ... sudo -u fink-bld [ENV] sh -c /tmp/fink.2H35l env LANG=C LC_ALL=C /sw/bin/tar --no-same-owner --no-same-permissions -xvf /sw/src/XML_3.98-1.1.tar.gz XML/ XML/MD5 XML/xpathPointer.xml XML/testRemoveFinalizers.c XML/testRemoveFinalizers.R XML/symbols.rds XML/src/ XML/src/xpath.c XML/src/xmlsecurity.c XML/src/schema.c XML/src/libxmlFeatures.c XML/src/fixNS.c XML/src/XMLTree.c XML/src/XMLHashTree.c XML/src/XMLEventParse.c XML/src/Utils.h XML/src/Utils.c XML/src/SPlus/ XML/src/SPlus/SUtils.h XML/src/SPlus/SUtils.c XML/src/Rcatalog.c XML/src/RUtils.c XML/src/RS_XML.h XML/src/RSDTD.h XML/src/RSDTD.c XML/src/RSCommon.h XML/src/NodeGC.h XML/src/NodeGC.c XML/src/Makevars.win XML/src/Makevars.in XML/src/HTMLParse.c XML/src/ExpatParse.h XML/src/ExpatParse.c XML/src/EventParse.h XML/src/EventParse.c XML/src/DocParse.h XML/src/DocParse.c XML/scrapingData.xml XML/man/ XML/man/xmlValue.Rd XML/man/xmlTreeParse.Rd XML/man/xmlTree.Rd XML/man/xmlToS4.Rd XML/man/xmlToList.Rd XML/man/xmlToDataFrame.Rd XML/man/xmlSubset.Rd XML/man/xmlStructuredStop.Rd XML/man/xmlStopParser.Rd XML/man/xmlSource.Rd XML/man/xmlSize.Rd XML/man/xmlSerializeHook.Rd XML/man/xmlSearchNs.Rd XML/man/xmlSchemaValidate.Rd XML/man/xmlRoot.Rd XML/man/xmlParserContextFunction.Rd XML/man/xmlParseDoc.Rd XML/man/xmlParent.Rd XML/man/xmlOutput.Rd XML/man/xmlNode.Rd XML/man/xmlNamespaceDefinitions.Rd XML/man/xmlNamespace.Rd XML/man/xmlName.Rd XML/man/xmlHandler.Rd XML/man/xmlGetAttr.Rd XML/man/xmlFlatListTree.Rd XML/man/xmlEventParse.Rd XML/man/xmlEventHandler.Rd XML/man/xmlElementsByTagName.Rd XML/man/xmlElementSummary.Rd XML/man/xmlDOMApply.Rd XML/man/xmlContainsEntity.Rd XML/man/xmlClone.Rd XML/man/xmlCleanNamespaces.Rd XML/man/xmlChildren.Rd XML/man/xmlAttrs.Rd XML/man/xmlAttributeType.Rd XML/man/xmlApply.Rd XML/man/toString.Rd XML/man/toHTML.Rd XML/man/supportsExpat.Rd XML/man/setXMLNamespace.Rd XML/man/schema-class.Rd XML/man/saveXML.Rd XML/man/removeXMLNamespaces.Rd XML/man/readSolrDoc.Rd XML/man/readKeyValueDB.Rd XML/man/readHTMLTable.Rd XML/man/readHTMLList.Rd XML/man/processXInclude.Rd XML/man/print.Rd XML/man/parseXMLAndAdd.Rd XML/man/parseURI.Rd XML/man/parseDTD.Rd XML/man/newXMLNamespace.Rd XML/man/newXMLDoc.Rd XML/man/names.XMLNode.Rd XML/man/makeClassTemplate.Rd XML/man/libxmlVersion.Rd XML/man/length.XMLNode.Rd XML/man/isXMLString.Rd XML/man/getXMLErrors.Rd XML/man/getXIncludes.Rd XML/man/getRelativeURL.Rd XML/man/getNodeSet.Rd XML/man/getLineNumber.Rd XML/man/getHTMLLinks.Rd XML/man/getEncoding.Rd XML/man/getChildrenStrings.Rd XML/man/genericSAXHandlers.Rd XML/man/free.Rd XML/man/findXInclude.Rd XML/man/ensureNamespace.Rd XML/man/dtdValidElement.Rd XML/man/dtdIsAttribute.Rd XML/man/dtdElementValidEntry.Rd XML/man/dtdElement.Rd XML/man/docName.Rd XML/man/compareXMLDocs.Rd XML/man/coerce.Rd XML/man/catalogs.Rd XML/man/catalogResolve.Rd XML/man/asXMLTreeNode.Rd XML/man/asXMLNode.Rd XML/man/append.XMLNode.Rd XML/man/addSibling.Rd XML/man/addNode.Rd XML/man/addChildren.Rd XML/man/XMLNode-class.Rd XML/man/XMLInternalDocument.Rd XML/man/XMLCodeFile-class.Rd XML/man/XMLAttributes-class.Rd XML/man/SAXState-class.Rd XML/man/SAXMethods.Rd XML/man/Doctype.Rd XML/man/Doctype-class.Rd XML/man/AssignXMLNode.Rd XML/libxml2.9.R XML/libxml/ XML/libxml/PATCH.attribute XML/libxml/GNUmakefile XML/inst/ XML/inst/scripts/ XML/inst/scripts/RSXML.csh.in XML/inst/scripts/RSXML.bsh.in XML/inst/examples/ XML/inst/examples/yeast_small-01.xml XML/inst/examples/xpath.xml XML/inst/examples/xpath.R XML/inst/examples/xmlTree.R XML/inst/examples/xmlTags.xml XML/inst/examples/xmlSource.R XML/inst/examples/xml2tex.Sxml XML/inst/examples/writeExamples.S XML/inst/examples/wordML.R XML/inst/examples/valueFilterDataFrameEvent.R XML/inst/examples/trademe_cars.R XML/inst/examples/tags.Sxml XML/inst/examples/svg.R XML/inst/examples/schemas.xml XML/inst/examples/schemaEg.xml XML/inst/examples/schema.xsd XML/inst/examples/sbmlSAX.S XML/inst/examples/sbml.xml XML/inst/examples/reorder.xml XML/inst/examples/redirection.R XML/inst/examples/rcode.xsl XML/inst/examples/rcode.xml XML/inst/examples/promptXML.Sxml XML/inst/examples/promptXML.R XML/inst/examples/prompt.xml XML/inst/examples/pmml.R XML/inst/examples/pi.xml XML/inst/examples/oop.S XML/inst/examples/newNodes.R XML/inst/examples/namespaces1.S XML/inst/examples/namespaces.S XML/inst/examples/modified_itunes_sax.R XML/inst/examples/mi1.R XML/inst/examples/mexico.xml XML/inst/examples/mexico.R XML/inst/examples/metlin.R XML/inst/examples/mathmlPlot.R XML/inst/examples/mathml.R XML/inst/examples/itunesSax2.R XML/inst/examples/itunesSax1.R XML/inst/examples/itunesSax.R XML/inst/examples/itunes.xsl XML/inst/examples/itunes.xml XML/inst/examples/itunes.R XML/inst/examples/internalXInclude.xml XML/inst/examples/internalNodes.S XML/inst/examples/index.html XML/inst/examples/iTunes.plist XML/inst/examples/hashTree.R XML/inst/examples/gnumericHandler.R XML/inst/examples/gettingStarted.xml XML/inst/examples/gettingStarted.html XML/inst/examples/getElements.S XML/inst/examples/generic_file.xml XML/inst/examples/genericHandlers.R XML/inst/examples/functionIndex.Sxml XML/inst/examples/formals.xsl XML/inst/examples/foo.html XML/inst/examples/filterDataFrameEvent.R XML/inst/examples/faq.R XML/inst/examples/eventHandlers.R XML/inst/examples/event.S XML/inst/examples/event.R XML/inst/examples/enhancedDataFrame.R XML/inst/examples/ecb.R XML/inst/examples/docbook.R XML/inst/examples/dataFrameEvent.R XML/inst/examples/createTree1.R XML/inst/examples/createTree.R XML/inst/examples/connections1.R XML/inst/examples/connections.R XML/inst/examples/catalog.R XML/inst/examples/bondsTables.R XML/inst/examples/bondYields.R XML/inst/examples/author.R XML/inst/examples/SSource.dtd XML/inst/examples/SAXEntity.R XML/inst/examples/RhelpInfo.xml XML/inst/examples/RhelpArchive.xml XML/inst/examples/Rhelp.xml XML/inst/examples/README XML/inst/examples/HTMLText.R XML/inst/examples/GNUmakefile XML/inst/examples/DiGIR.R XML/inst/examples/CIS.R XML/inst/exampleData/ XML/inst/exampleData/xyz.svg.gz XML/inst/exampleData/xysize.svg XML/inst/exampleData/xpathTest.xml XML/inst/exampleData/xinclude/ XML/inst/exampleData/xinclude/top.xml XML/inst/exampleData/xinclude/simple.xml XML/inst/exampleData/xinclude/e.xml XML/inst/exampleData/xinclude/d.xml XML/inst/exampleData/xinclude/c.xml XML/inst/exampleData/xinclude/b.xml XML/inst/exampleData/xinclude/a.xml XML/inst/exampleData/writeRS.xml XML/inst/exampleData/writeRS.S XML/inst/exampleData/vars.xml XML/inst/exampleData/utf.xml XML/inst/exampleData/tides.xml XML/inst/exampleData/test1.xml XML/inst/exampleData/test.xml XML/inst/exampleData/tagnames.xml XML/inst/exampleData/symslines.svg XML/inst/exampleData/svg.xml XML/inst/exampleData/something.xml XML/inst/exampleData/solr.xml XML/inst/exampleData/size3.xml XML/inst/exampleData/size2.xml XML/inst/exampleData/size1.xml XML/inst/exampleData/size.xml XML/inst/exampleData/simple.xml XML/inst/exampleData/simple.plist XML/inst/exampleData/setInterval.xml XML/inst/exampleData/same.xml XML/inst/exampleData/rxinclude.xml XML/inst/exampleData/rhelp.xsl XML/inst/exampleData/reparent.xml XML/inst/exampleData/redundantNS.xml XML/inst/exampleData/raw.xml XML/inst/exampleData/plist.xml XML/inst/exampleData/nsAttrs.xml XML/inst/exampleData/nodes3.xml XML/inst/exampleData/nodes2.xml XML/inst/exampleData/nodes1.xml XML/inst/exampleData/nodes.xml XML/inst/exampleData/namespaces2.xml XML/inst/exampleData/namespaces1.xml XML/inst/exampleData/namespaces.xml XML/inst/exampleData/namespaceHandlers.xml XML/inst/exampleData/mtcars.xml XML/inst/exampleData/matrixMult.xml XML/inst/exampleData/mathmlSums.xml XML/inst/exampleData/mathmlSphere.xml XML/inst/exampleData/mathmlSimple.xml XML/inst/exampleData/mathmlSet.xml XML/inst/exampleData/mathmlScript.xml XML/inst/exampleData/mathmlRoot.xml XML/inst/exampleData/mathmlQuadratic.xml XML/inst/exampleData/mathmlMatrix.xml XML/inst/exampleData/mathmlInt.xml XML/inst/exampleData/mathmlFuncCall.xml XML/inst/exampleData/mathml.xml XML/inst/exampleData/mathml.dtd XML/inst/exampleData/malformed.xml XML/inst/exampleData/longitudinalData.xml XML/inst/exampleData/literateFunction.xml XML/inst/exampleData/literate.xsl XML/inst/exampleData/literate.xml XML/inst/exampleData/literate.dtd XML/inst/exampleData/lists.html XML/inst/exampleData/largeText.xml XML/inst/exampleData/kiva_lender.xml XML/inst/exampleData/job.xml XML/inst/exampleData/include.xml XML/inst/exampleData/iTunes.plist XML/inst/exampleData/graph.gxl XML/inst/exampleData/gnumeric.xml XML/inst/exampleData/generalInfo.xml XML/inst/exampleData/functionTemplate.xml XML/inst/exampleData/foo.dtd XML/inst/exampleData/event.xml XML/inst/exampleData/eurofxref-hist.xml.gz XML/inst/exampleData/entityValue XML/inst/exampleData/entity4.xml XML/inst/exampleData/entity3.html XML/inst/exampleData/entity2.xml XML/inst/exampleData/entity1.xml XML/inst/exampleData/entity.xml XML/inst/exampleData/dtd.zip XML/inst/exampleData/dot.xml XML/inst/exampleData/dataframe.xml XML/inst/exampleData/content.html XML/inst/exampleData/cleanNamespace.xml XML/inst/exampleData/charts.svg XML/inst/exampleData/cdata.xml XML/inst/exampleData/catalog.xml XML/inst/exampleData/branch.xml XML/inst/exampleData/boxplot.svg XML/inst/exampleData/book.xml XML/inst/exampleData/basic.xml XML/inst/exampleData/author2.xsd XML/inst/exampleData/author2.xml XML/inst/exampleData/author1.xml XML/inst/exampleData/author.xsd XML/inst/exampleData/author.xml XML/inst/exampleData/allNodeTypes.xml XML/inst/exampleData/TestInvalid.xml XML/inst/exampleData/StatModel.dtd XML/inst/exampleData/SOAPNamespaces.xml XML/inst/exampleData/Rsource.xml XML/inst/exampleData/Rref.xml XML/inst/exampleData/README XML/inst/exampleData/GNUmakefile XML/inst/exampleData/9003.html XML/inst/exampleData/9003-en.html XML/index.html.in XML/index.html XML/expat/ XML/expat/xmltok/ XML/expat/xmltok/GNUmakefile XML/expat/xmlparse/ XML/expat/xmlparse/GNUmakefile XML/expat/GNUmakefile.lib XML/expat/GNUmakefile XML/dotCalls XML/configure.win XML/configure.in XML/configure XML/cleanup XML/checkLinks/ XML/checkLinks/other_checkLinks.R XML/checkLinks/checkLinks.R XML/checkLinks/big_checkLinks.R XML/addFinalizer XML/a.out.dSYM/ XML/a.out.dSYM/Contents/ XML/a.out.dSYM/Contents/Resources/ XML/a.out.dSYM/Contents/Resources/DWARF/ XML/a.out.dSYM/Contents/Resources/DWARF/a.out XML/a.out.dSYM/Contents/Info.plist XML/VersionInfo XML/Todo.xml XML/Todo-orig.html XML/TAGS XML/Rsamples/ XML/Rsamples/userClasses.R XML/Rsamples/tt.R XML/Rsamples/tryBug.R XML/Rsamples/toList.R XML/Rsamples/testNew.R XML/Rsamples/testGC.R XML/Rsamples/test.R XML/Rsamples/stop.R XML/Rsamples/parent.R XML/Rsamples/ns.R XML/Rsamples/humus.R XML/Rsamples/hhtmlFree.R XML/Rsamples/gc2.R XML/Rsamples/gc1.R XML/Rsamples/gc.R XML/Rsamples/free.R XML/Rsamples/findXInclude.R XML/Rsamples/encoding.R XML/Rsamples/check.R XML/Rsamples/attrs.R XML/Rsamples/addChildren.R XML/README.windows XML/README XML/R/ XML/R/zzz.R XML/R/xmlTreeParse.R XML/R/xmlTree.R XML/R/xmlToDataFrame.R XML/R/xmlString.R XML/R/xmlRoot.R XML/R/xmlOutputDOM.R XML/R/xmlOutputBuffer.R XML/R/xmlNodes.R XML/R/xmlMemoryMgmt.R XML/R/xmlInternalSource.R XML/R/xmlIncludes.R XML/R/xmlHandler.R XML/R/xmlEventParse.R XML/R/xmlEventHandler.R XML/R/xmlErrorEnums.R XML/R/xincludes.R XML/R/version.R XML/R/tree.R XML/R/toString.S XML/R/tangle1.R XML/R/tangle.R XML/R/supports.R.in XML/R/summary.R XML/R/solrDocs.R XML/R/simplifyPath.R XML/R/serialize.R XML/R/schema.S XML/R/saveXML.R XML/R/reflection.R XML/R/readHTMLTable.R XML/R/parser.R XML/R/parseDTD.R XML/R/nodeAccessors.R XML/R/namespaces.R XML/R/namespaceHandlers.R XML/R/libxmlFeatures.R XML/R/keyValueDB.R XML/R/htmlParse.R XML/R/htmlLists.R XML/R/htmlLinks.R XML/R/hashTree.R XML/R/getRelativeURL.R XML/R/getDependencies.R XML/R/flatTree.R XML/R/fixNS.R XML/R/error.R XML/R/encoding.R XML/R/dynSupports.R XML/R/createNode.R XML/R/compare.R XML/R/catalog.R XML/R/bitList.R XML/R/assignChild.R XML/R/applyDOM.R XML/R/XMLRErrorInfo.R XML/R/XMLClasses.R XML/R/SAXMethods.S XML/R/DTDRef.R XML/R/DTDClasses.R XML/R/DTD.R XML/R/AAA.R XML/QuestionSolutions/ XML/QuestionSolutions/NeuroRetina/ XML/QuestionSolutions/NeuroRetina/tracing.xml XML/QuestionSolutions/NeuroRetina/neuro.R XML/Notes XML/NodeFuns XML/NAMESPACE.in XML/NAMESPACE XML/MemoryBug.R XML/Makevars.in XML/GNUmakefile.admin XML/GNUmakefile XML/FIXME_NOW XML/FAQ.html XML/Docs/ XML/Docs/shortIntro.xml XML/Docs/navigation.xml XML/Docs/memory.tex XML/Docs/manual.xml XML/Docs/manual.nw XML/Docs/literate.nw XML/Docs/job.xml XML/Docs/htmlTable.xml XML/Docs/exercises.xml XML/Docs/description.xml XML/Docs/description.nw XML/Docs/bibliog.bib XML/Docs/WritingXML.html XML/Docs/Tour.xml XML/Docs/Tour.nw XML/Docs/Schema.xml XML/Docs/SSource.xml XML/Docs/RXML.xml XML/Docs/RSXML.nw XML/Docs/RSHelp.xml XML/Docs/RS.xml XML/Docs/Outline.xml XML/Docs/Outline.nw XML/Docs/OOP.nw XML/Docs/ModernDoc.pdf XML/Docs/ModernDoc.html XML/Docs/ModernDoc.Rdb XML/Docs/MemoryManagement.pdf XML/Docs/MemoryManagement.html XML/Docs/MathML.xml XML/Docs/MathML.nw XML/Docs/InternalDOM.nw XML/Docs/GeneratingXML.nw XML/Docs/GeneralHandlers.xml XML/Docs/GNUmakefile XML/Docs/CreatingXML.xml XML/DESCRIPTION.in XML/DESCRIPTION XML/Copyright XML/CodeDetails XML/Check XML/Changes XML/Bugs.html XML/Bugs/ XML/Bugs/wormmart.R XML/Bugs/memory.R XML/Bugs/createXMLNode.R XML/Bugs/XMLStuff XML/Bug.R sudo -u fink-bld [ENV] sh -c /tmp/fink.NuC2v /tmp/fink.KhDFp #!/bin/sh -ev export TMPDIR=/sw/build.build/cran-xml-r30-3.98-1.1-1/XML/tmp BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R # perl -pi -e "s/LIBXML2_OK=0/LIBXML2_OK=1/g" configure pushd .. /sw/build.build/cran-xml-r30-3.98-1.1-1 /sw/build.build/cran-xml-r30-3.98-1.1-1/XML if [[ 3.0 > 2.15 ]]; then $BIN_R --verbose CMD build --no-build-vignettes XML else $BIN_R --verbose CMD build --no-vignettes XML fi WARNING: ignoring environment value of R_HOME * checking for file 'XML/DESCRIPTION' ... OK * preparing 'XML': * checking DESCRIPTION meta-information ... OK * cleaning src * running 'cleanup' * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building 'XML_3.98-1.1.tar.gz' /bin/rm -rf /sw/build.build/root-cran-xml-r30-3.98-1.1-1 /bin/mkdir -p /sw/build.build/root-cran-xml-r30-3.98-1.1-1/sw /bin/mkdir -p /sw/build.build/root-cran-xml-r30-3.98-1.1-1/DEBIAN /usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-cran-xml-r30-3.98-1.1-1 sudo -u fink-bld [ENV] sh -c /tmp/fink.A2BJP /tmp/fink.8yXPi #!/bin/sh -ev BIN_R=/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/bin/R mkdir -p /sw/build.build/root-cran-xml-r30-3.98-1.1-1/sw/lib/R/3.0/site-library pushd /sw/build.build/cran-xml-r30-3.98-1.1-1/XML/.. && $BIN_R --verbose CMD install --library=/sw/build.build/root-cran-xml-r30-3.98-1.1-1/sw/lib/R/3.0/site-library XML /sw/build.build/cran-xml-r30-3.98-1.1-1 /sw/build.build/cran-xml-r30-3.98-1.1-1/XML WARNING: ignoring environment value of R_HOME * installing *source* package 'XML' ... ** package 'XML' successfully unpacked and MD5 sums checked checking for gcc... gcc checking for C compiler default output file name... rm: a.out.dSYM: is a directory a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for sed... /usr/bin/sed checking for pkg-config... no checking for xml2-config... /sw/bin/xml2-config USE_XML2 = yes SED_EXTENDED_ARG: -E Minor 9, Patch 1 for 2.9.1 Located parser file -I/sw/include/libxml2 -I/sw/include/parser.h Checking for 1.8: -I/sw/include/libxml2 -I/sw/include Using libxml2.* checking for gzopen in -lz... yes checking for xmlParseFile in -lxml2... yes checking for xmlHashSize in -lxml2... yes Using built-in xmlHashSize Checking DTD parsing (presence of externalSubset)... checking for xmlHashSize in -lxml2... yes Found xmlHashSize checking for xmlOutputBufferCreateBuffer in -lxml2... yes have xmlOutputBufferCreateBuffer() checking for xmlDocDumpFormatMemoryEnc in -lxml2... yes checking libxml/xmlversion.h usability... yes checking libxml/xmlversion.h presence... yes checking for libxml/xmlversion.h... yes Expat: FALSE Checking for return type of xmlHashScan element routine. No return value for xmlHashScan xmlNs has a context field Checking for cetype_t enumeration Using recent version of R with cetype_t enumeration type for encoding checking for xmlsec1-config... no nodegc default xml-debug default Version has XML_WITH_ZLIB Version has xmlHasFeature() **************************************** Configuration information: Libxml settings libxml include directory: -I/sw/include/libxml2 -I/sw/include libxml library directory: -L/sw/lib -lxml2 -lz -lpthread -L/sw/lib -liconv -lm -lz -lxml2 libxml 2: -DLIBXML2=1 Compilation flags: -DLIBXML -I/sw/include/libxml2 -I/sw/include -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 Link flags: -L/sw/lib -lxml2 -lz -lpthread -L/sw/lib -liconv -lm -lz -lxml2 **************************************** configure: creating ./config.status config.status: creating src/Makevars config.status: creating R/supports.R config.status: creating inst/scripts/RSXML.csh config.status: creating inst/scripts/RSXML.bsh ** libs flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DLIBXML -I/sw/include/libxml2 -I/sw/include -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/sw/include -fPIC -g -O3 -c DocParse.c -o DocParse.o DocParse.c:375:60: warning: passing 'const char *' to parameter of type 'const xmlChar *' (aka 'const unsigned char *') converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(VECTOR_ELT(rdoc, FILE_ELEMENT_NAME), 0, ENC_COPY_TO_USER_STRING(doc->name ? XMLCHAR_TO_CHAR(doc->name) : fileName)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:235:74: note: expanded from macro 'ENC_COPY_TO_USER_STRING' #define ENC_COPY_TO_USER_STRING(x) CreateCharSexpWithEncoding(encoding, CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ ./Utils.h:220:73: note: passing argument to parameter 'str' here SEXP CreateCharSexpWithEncoding(const xmlChar *encoding, const xmlChar *str); ^ DocParse.c:376:54: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(rdoc_el_names, FILE_ELEMENT_NAME, COPY_TO_USER_STRING("file")); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ DocParse.c:384:38: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] COPY_TO_USER_STRING(version)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ DocParse.c:385:55: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(rdoc_el_names, VERSION_ELEMENT_NAME, COPY_TO_USER_STRING("version")); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ DocParse.c:405:56: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(rdoc_el_names, CHILDREN_ELEMENT_NAME, COPY_TO_USER_STRING("children")); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ DocParse.c:410:28: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(klass, 0, COPY_TO_USER_STRING("XMLDocumentContent")); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ DocParse.c:615:53: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(ans_el_names, NUM_NODE_ELEMENTS, COPY_TO_USER_STRING("value")); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ DocParse.c:768:31: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(klass, 0, COPY_TO_USER_STRING("XMLNamespaceDefinition")); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ DocParse.c:1226:31: warning: passing 'char *' to parameter of type 'const xmlChar *' (aka 'const unsigned char *') converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(names, i, ENC_COPY_TO_USER_STRING(ptr->name ? XMLCHAR_TO_CHAR(ptr->name) : "")); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:235:74: note: expanded from macro 'ENC_COPY_TO_USER_STRING' #define ENC_COPY_TO_USER_STRING(x) CreateCharSexpWithEncoding(encoding, CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ ./Utils.h:220:73: note: passing argument to parameter 'str' here SEXP CreateCharSexpWithEncoding(const xmlChar *encoding, const xmlChar *str); ^ 9 warnings generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DLIBXML -I/sw/include/libxml2 -I/sw/include -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/sw/include -fPIC -g -O3 -c EventParse.c -o EventParse.o EventParse.c:218:45: warning: passing 'const XML_Char *' (aka 'const char *') to parameter of type 'const xmlChar *' (aka 'const unsigned char *') converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(VECTOR_ELT(opArgs, i), 0, ENC_COPY_TO_USER_STRING(xml_args[i] ? xml_args[i] : "")); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:235:74: note: expanded from macro 'ENC_COPY_TO_USER_STRING' #define ENC_COPY_TO_USER_STRING(x) CreateCharSexpWithEncoding(encoding, CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ ./Utils.h:220:73: note: passing argument to parameter 'str' here SEXP CreateCharSexpWithEncoding(const xmlChar *encoding, const xmlChar *str); ^ EventParse.c:405:6: warning: assigning to 'xmlChar *' (aka 'unsigned char *') from 'char *' converts between pointers to integer types with different sign [-Wpointer-sign] tmp = strdup(""); ^ ~~~~~~~~~~ 2 warnings generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DLIBXML -I/sw/include/libxml2 -I/sw/include -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/sw/include -fPIC -g -O3 -c ExpatParse.c -o ExpatParse.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DLIBXML -I/sw/include/libxml2 -I/sw/include -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/sw/include -fPIC -g -O3 -c HTMLParse.c -o HTMLParse.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DLIBXML -I/sw/include/libxml2 -I/sw/include -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/sw/include -fPIC -g -O3 -c NodeGC.c -o NodeGC.o NodeGC.c:178:12: warning: incompatible pointer to integer conversion assigning to 'int' from 'int *'; remove & [-Wint-conversion] val[1] = R_MEMORY_MANAGER_MARKER; ^ ~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DLIBXML -I/sw/include/libxml2 -I/sw/include -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/sw/include -fPIC -g -O3 -c RSDTD.c -o RSDTD.o RSDTD.c:325:56: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(scanData->dtdNames, scanData->counter, COPY_TO_USER_STRING(XMLCHAR_TO_CHAR(name))); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ RSDTD.c:399:56: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(scanData->dtdNames, scanData->counter, COPY_TO_USER_STRING(XMLCHAR_TO_CHAR(name))); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ RSDTD.c:434:60: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(VECTOR_ELT(ans, DTD_ENTITY_NAME_SLOT), 0, COPY_TO_USER_STRING(XMLCHAR_TO_CHAR(entity->name))); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ RSDTD.c:445:64: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(VECTOR_ELT(ans, DTD_ENTITY_CONTENT_SLOT), 0, COPY_TO_USER_STRING(XMLCHAR_TO_CHAR(value))); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ RSDTD.c:449:64: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(VECTOR_ELT(ans, DTD_ENTITY_ORIG_SLOT), 0, COPY_TO_USER_STRING(XMLCHAR_TO_CHAR(entity->orig))); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ RSDTD.c:491:60: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(VECTOR_ELT(rel, DTD_ELEMENT_NAME_SLOT), 0, COPY_TO_USER_STRING( XMLCHAR_TO_CHAR( ( el->name ? el->name : (xmlChar*)"")))); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ RSDTD.c:578:71: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(VECTOR_ELT(ans, DTD_CONTENT_ELEMENTS_SLOT), 0, COPY_TO_USER_STRING(XMLCHAR_TO_CHAR(vals->name))); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ RSDTD.c:678:33: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(names, i, COPY_TO_USER_STRING(XMLCHAR_TO_CHAR(tmp->name))); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ RSDTD.c:727:63: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(VECTOR_ELT(ans, DTD_ATTRIBUTE_NAME_SLOT), 0, COPY_TO_USER_STRING(XMLCHAR_TO_CHAR(val->name))); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ RSDTD.c:741:74: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(VECTOR_ELT(ans, DTD_ATTRIBUTE_DEFAULT_VALUE_SLOT), 0, COPY_TO_USER_STRING( XMLCHAR_TO_CHAR( (val->defaultValue ? val->defaultValue : (xmlChar*)"")))); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ RSDTD.c:779:30: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(ans, i, COPY_TO_USER_STRING(XMLCHAR_TO_CHAR(tmp->name))); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ 11 warnings generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DLIBXML -I/sw/include/libxml2 -I/sw/include -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/sw/include -fPIC -g -O3 -c RUtils.c -o RUtils.o RUtils.c:341:55: warning: result of comparison against a string literal is unspecified (use strncmp instead) [-Wstring-compare] if(encoding == (const xmlChar *) NULL || encoding == (const xmlChar *) "") { ^ ~~~~~~~~~~~~~~~~~~~~ RUtils.c:343:35: warning: passing 'char [6]' to parameter of type 'const xmlChar *' (aka 'const unsigned char *') converts between pointers to integer types with different sign [-Wpointer-sign] } else if(xmlStrcmp(encoding, "UTF-8") == 0 || xmlStrcmp(encoding, "utf-8") == 0) ^~~~~~~ /sw/include/libxml2/libxml/xmlstring.h:65:57: note: passing argument to parameter 'str2' here const xmlChar *str2); ^ RUtils.c:343:72: warning: passing 'char [6]' to parameter of type 'const xmlChar *' (aka 'const unsigned char *') converts between pointers to integer types with different sign [-Wpointer-sign] } else if(xmlStrcmp(encoding, "UTF-8") == 0 || xmlStrcmp(encoding, "utf-8") == 0) ^~~~~~~ /sw/include/libxml2/libxml/xmlstring.h:65:57: note: passing argument to parameter 'str2' here const xmlChar *str2); ^ RUtils.c:345:33: warning: passing 'char [11]' to parameter of type 'const xmlChar *' (aka 'const unsigned char *') converts between pointers to integer types with different sign [-Wpointer-sign] else if(xmlStrcmp(encoding, "ISO-8859-1") == 0 || xmlStrcmp(encoding, "iso-8859-1") == 0) ^~~~~~~~~~~~ /sw/include/libxml2/libxml/xmlstring.h:65:57: note: passing argument to parameter 'str2' here const xmlChar *str2); ^ RUtils.c:345:75: warning: passing 'char [11]' to parameter of type 'const xmlChar *' (aka 'const unsigned char *') converts between pointers to integer types with different sign [-Wpointer-sign] else if(xmlStrcmp(encoding, "ISO-8859-1") == 0 || xmlStrcmp(encoding, "iso-8859-1") == 0) ^~~~~~~~~~~~ /sw/include/libxml2/libxml/xmlstring.h:65:57: note: passing argument to parameter 'str2' here const xmlChar *str2); ^ RUtils.c:348:29: warning: passing 'const xmlChar *' (aka 'const unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] str = translateChar(mkChar(str)); ^~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ RUtils.c:348:6: warning: assigning to 'const xmlChar *' (aka 'const unsigned char *') from 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] str = translateChar(mkChar(str)); ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~ RUtils.c:351:20: warning: passing 'const xmlChar *' (aka 'const unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] ans = mkCharCE(str, enc); ^~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:743:30: note: passing argument to parameter here SEXP Rf_mkCharCE(const char *, cetype_t); ^ 8 warnings generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DLIBXML -I/sw/include/libxml2 -I/sw/include -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/sw/include -fPIC -g -O3 -c Rcatalog.c -o Rcatalog.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DLIBXML -I/sw/include/libxml2 -I/sw/include -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/sw/include -fPIC -g -O3 -c Utils.c -o Utils.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DLIBXML -I/sw/include/libxml2 -I/sw/include -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/sw/include -fPIC -g -O3 -c XMLEventParse.c -o XMLEventParse.o XMLEventParse.c:383:49: warning: passing 'char *' to parameter of type 'const xmlChar *' (aka 'const unsigned char *') converts between pointers to integer types with different sign [-Wpointer-sign] xmlSetProp(node, xmlStrdup(ptr[0]), getPropertyValue(ptr)); ^~~~~~~~~~~~~~~~~~~~~ /sw/include/libxml2/libxml/tree.h:1010:22: note: passing argument to parameter 'value' here const xmlChar *value); ^ XMLEventParse.c:442:19: warning: passing 'char [4]' to parameter of type 'const xmlChar *' (aka 'const unsigned char *') converts between pointers to integer types with different sign [-Wpointer-sign] doc = xmlNewDoc("1.0"); ^~~~~ /sw/include/libxml2/libxml/tree.h:775:30: note: passing argument to parameter 'version' here xmlNewDoc (const xmlChar *version); ^ XMLEventParse.c:528:72: warning: passing 'char *' to parameter of type 'const xmlChar *' (aka 'const unsigned char *') converts between pointers to integer types with different sign [-Wpointer-sign] SET_NAMES(tmp, ScalarString(CreateCharSexpWithEncoding(encoding, ( (void*)prefix ? XMLCHAR_TO_CHAR(prefix) : "")))); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rdefines.h:135:54: note: expanded from macro 'SET_NAMES' #define SET_NAMES(x, n) setAttrib(x, R_NamesSymbol, n) ^ ./Utils.h:220:73: note: passing argument to parameter 'str' here SEXP CreateCharSexpWithEncoding(const xmlChar *encoding, const xmlChar *str); ^ XMLEventParse.c:579:30: warning: passing 'char *' to parameter of type 'const xmlChar *' (aka 'const unsigned char *') converts between pointers to integer types with different sign [-Wpointer-sign] PROTECT(tmp = ScalarString(ENC_COPY_TO_USER_STRING((XMLCHAR_TO_CHAR(URI)) ? XMLCHAR_TO_CHAR(URI) : ""))); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:235:74: note: expanded from macro 'ENC_COPY_TO_USER_STRING' #define ENC_COPY_TO_USER_STRING(x) CreateCharSexpWithEncoding(encoding, CHAR_TO_XMLCHAR (x)) ^ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:554:31: note: expanded from macro 'PROTECT' #define PROTECT(s) Rf_protect(s) ^ ./Utils.h:220:73: note: passing argument to parameter 'str' here SEXP CreateCharSexpWithEncoding(const xmlChar *encoding, const xmlChar *str); ^ XMLEventParse.c:584:27: warning: passing 'const xmlChar *' (aka 'const unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] fun = findEndElementFun(localname, rinfo); ^~~~~~~~~ ./EventParse.h:178:44: note: passing argument to parameter 'name' here USER_OBJECT_ findEndElementFun(const char *name, RS_XMLParserData *rinfo); ^ 5 warnings generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DLIBXML -I/sw/include/libxml2 -I/sw/include -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/sw/include -fPIC -g -O3 -c XMLHashTree.c -o XMLHashTree.o XMLHashTree.c:87:29: warning: passing 'const xmlChar *' (aka 'const unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_NAMES(tmp, mkString(node->ns->prefix)); ^~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rdefines.h:135:54: note: expanded from macro 'SET_NAMES' #define SET_NAMES(x, n) setAttrib(x, R_NamesSymbol, n) ^ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:1144:31: note: passing argument to parameter here SEXP Rf_mkString(const char *); ^ XMLHashTree.c:93:41: warning: passing 'char *' to parameter of type 'const xmlChar *' (aka 'const unsigned char *') converts between pointers to integer types with different sign [-Wpointer-sign] SET_VECTOR_ELT(ans, i++, ScalarString(ENC_COPY_TO_USER_STRING(node->ns && node->ns->prefix ? XMLCHAR_TO_CHAR(node->ns->prefix) : ""))); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:235:74: note: expanded from macro 'ENC_COPY_TO_USER_STRING' #define ENC_COPY_TO_USER_STRING(x) CreateCharSexpWithEncoding(encoding, CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ ./Utils.h:220:73: note: passing argument to parameter 'str' here SEXP CreateCharSexpWithEncoding(const xmlChar *encoding, const xmlChar *str); ^ XMLHashTree.c:99:40: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_VECTOR_ELT(ans, i++, mkString(node->content)); ^~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:1144:31: note: passing argument to parameter here SEXP Rf_mkString(const char *); ^ XMLHashTree.c:109:34: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(names, i++, COPY_TO_USER_STRING("value")); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ XMLHashTree.c:111:34: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(names, i++, COPY_TO_USER_STRING("namespaceDefinitions")); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ XMLHashTree.c:120:30: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(names, i++, COPY_TO_USER_STRING("XMLHashTreeNode")); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ XMLHashTree.c:122:33: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(names, i++, COPY_TO_USER_STRING("XMLTextNode")); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ XMLHashTree.c:124:33: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(names, i++, COPY_TO_USER_STRING("XMLCommentNode")); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ XMLHashTree.c:126:33: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(names, i++, COPY_TO_USER_STRING("XMLCDataNode")); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ XMLHashTree.c:128:33: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(names, i++, COPY_TO_USER_STRING("XMLPINode")); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ XMLHashTree.c:130:30: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(names, i++, COPY_TO_USER_STRING("XMLNode")); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ 11 warnings generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DLIBXML -I/sw/include/libxml2 -I/sw/include -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/sw/include -fPIC -g -O3 -c XMLTree.c -o XMLTree.o XMLTree.c:224:55: warning: passing 'const xmlChar *' (aka 'const unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] if(!(id[0] && !p->prefix) || (p->prefix && strcmp(p->prefix, id) == 0)) { ^~~~~~~~~ /usr/include/string.h:77:25: note: passing argument to parameter here int strcmp(const char *, const char *); ^ XMLTree.c:233:52: warning: passing 'const xmlChar *' (aka 'const unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] if((!id[0] && !p->prefix) || (p->prefix && strcmp(p->prefix, id) == 0)) { ^~~~~~~~~ /usr/include/string.h:77:25: note: passing argument to parameter here int strcmp(const char *, const char *); ^ XMLTree.c:308:56: warning: passing 'const xmlChar *' (aka 'const unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] LOGICAL(ans)[i] = removeNodeNamespaceByName(node, p->prefix); ^~~~~~~~~ XMLTree.c:216:63: note: passing argument to parameter 'id' here removeNodeNamespaceByName(xmlNodePtr node, const char * const id) ^ XMLTree.c:503:23: warning: passing 'const char *' to parameter of type 'const xmlChar *' (aka 'const unsigned char *') converts between pointers to integer types with different sign [-Wpointer-sign] n = xmlNewText(CHAR(STRING_ELT(node, i))); ^~~~~~~~~~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:395:18: note: expanded from macro 'CHAR' #define CHAR(x) R_CHAR(x) ^~~~~~~~~ /sw/include/libxml2/libxml/tree.h:848:31: note: passing argument to parameter 'content' here xmlNewText (const xmlChar *content); ^ XMLTree.c:743:21: warning: passing 'char [1]' to parameter of type 'const xmlChar *' (aka 'const unsigned char *') converts between pointers to integer types with different sign [-Wpointer-sign] doc = htmlNewDoc("", NULL); ^~ /sw/include/libxml2/libxml/HTMLtree.h:63:31: note: passing argument to parameter 'URI' here htmlNewDoc (const xmlChar *URI, ^ XMLTree.c:954:27: warning: passing 'const xmlChar *' (aka 'const unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] PROTECT(ans = mkString(ns->href)); ^~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:554:31: note: expanded from macro 'PROTECT' #define PROTECT(s) Rf_protect(s) ^ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:1144:31: note: passing argument to parameter here SEXP Rf_mkString(const char *); ^ XMLTree.c:1103:9: warning: incompatible pointer to integer conversion assigning to 'int' from 'int *'; remove & [-Wint-conversion] val[1] = R_MEMORY_MANAGER_MARKER; ^ ~~~~~~~~~~~~~~~~~~~~~~~ XMLTree.c:1456:55: warning: passing 'const char *' to parameter of type 'const xmlChar *' (aka 'const unsigned char *') converts between pointers to integer types with different sign [-Wpointer-sign] ans = ScalarString(CreateCharSexpWithEncoding(encoding, xbuf->content)); ^~~~~~~~ ./Utils.h:220:48: note: passing argument to parameter 'encoding' here SEXP CreateCharSexpWithEncoding(const xmlChar *encoding, const xmlChar *str); ^ XMLTree.c:1458:37: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] ans = ScalarString(mkCharCE(xbuf->content, INTEGER(r_encoding_int)[0])); ^~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:743:30: note: passing argument to parameter here SEXP Rf_mkCharCE(const char *, cetype_t); ^ XMLTree.c:1495:25: warning: passing 'const char *' to parameter of type 'const xmlChar *' (aka 'const unsigned char *') converts between pointers to integer types with different sign [-Wpointer-sign] xmlNodeSetContent(n, str); ^~~ /sw/include/libxml2/libxml/tree.h:1053:22: note: passing argument to parameter 'content' here const xmlChar *content); ^ XMLTree.c:1536:37: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] ans = ScalarString(mkCharCE(tmp, INTEGER(r_encoding)[0])); ^~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:743:30: note: passing argument to parameter here SEXP Rf_mkCharCE(const char *, cetype_t); ^ XMLTree.c:1695:39: warning: comparison of distinct pointer types ('xmlDocPtr' (aka 'struct _xmlDoc *') and 'SEXP' (aka 'struct SEXPREC *')) [-Wcompare-distinct-pointer-types] xmlDocPtr doc = (xmlDocPtr) r_doc == NULL_USER_OBJECT ? NULL : R_ExternalPtrAddr(r_doc); ~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~ XMLTree.c:1703:58: warning: passing 'const char *' to parameter of type 'const xmlChar *' (aka 'const unsigned char *') converts between pointers to integer types with different sign [-Wpointer-sign] ns = LOGICAL(r_asPrefix)[0] ? xmlSearchNs(doc, node, val) : xmlSearchNsByHref(doc, node, val); ^~~ /sw/include/libxml2/libxml/tree.h:984:22: note: passing argument to parameter 'nameSpace' here const xmlChar *nameSpace); ^ XMLTree.c:1703:94: warning: passing 'const char *' to parameter of type 'const xmlChar *' (aka 'const unsigned char *') converts between pointers to integer types with different sign [-Wpointer-sign] ns = LOGICAL(r_asPrefix)[0] ? xmlSearchNs(doc, node, val) : xmlSearchNsByHref(doc, node, val); ^~~ /sw/include/libxml2/libxml/tree.h:988:22: note: passing argument to parameter 'href' here const xmlChar *href); ^ XMLTree.c:1709:28: warning: passing 'const xmlChar *' (aka 'const unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] PROTECT(r_ans = mkString(ns->href)); ^~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:554:31: note: expanded from macro 'PROTECT' #define PROTECT(s) Rf_protect(s) ^ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:1144:31: note: passing argument to parameter here SEXP Rf_mkString(const char *); ^ XMLTree.c:1745:31: warning: passing 'const xmlChar *' (aka 'const unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] if(ptr->name && strcmp(name, ptr->name) == 0) ^~~~~~~~~ /usr/include/string.h:77:39: note: passing argument to parameter here int strcmp(const char *, const char *); ^ XMLTree.c:1790:22: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SEXP val = mkCharCE(tmp, encoding); ^~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:743:30: note: passing argument to parameter here SEXP Rf_mkCharCE(const char *, cetype_t); ^ XMLTree.c:1797:40: warning: passing 'const xmlChar *' (aka 'const unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(names, i, mkCharCE(kid->name, encoding)); ^~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:743:30: note: passing argument to parameter here SEXP Rf_mkCharCE(const char *, cetype_t); ^ 18 warnings generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DLIBXML -I/sw/include/libxml2 -I/sw/include -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/sw/include -fPIC -g -O3 -c fixNS.c -o fixNS.o fixNS.c:32:21: warning: passing 'const xmlChar *' (aka 'const unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] if(ns && strcmp(ns->href, "") == 0) ^~~~~~~~ /usr/include/string.h:77:25: note: passing argument to parameter here int strcmp(const char *, const char *); ^ fixNS.c:75:37: warning: passing 'const xmlChar *' (aka 'const unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] if(prefix && ptr->prefix && strcmp(ptr->prefix, prefix) == 0) ^~~~~~~~~~~ /usr/include/string.h:77:25: note: passing argument to parameter here int strcmp(const char *, const char *); ^ fixNS.c:75:50: warning: passing 'const xmlChar *' (aka 'const unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] if(prefix && ptr->prefix && strcmp(ptr->prefix, prefix) == 0) ^~~~~~ /usr/include/string.h:77:39: note: passing argument to parameter here int strcmp(const char *, const char *); ^ 3 warnings generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DLIBXML -I/sw/include/libxml2 -I/sw/include -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/sw/include -fPIC -g -O3 -c libxmlFeatures.c -o libxmlFeatures.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DLIBXML -I/sw/include/libxml2 -I/sw/include -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/sw/include -fPIC -g -O3 -c schema.c -o schema.o schema.c:78:37: warning: passing 'xmlChar *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_STRING_ELT(d->names, d->pos, COPY_TO_USER_STRING(name)); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./Utils.h:234:40: note: expanded from macro 'COPY_TO_USER_STRING' #define COPY_TO_USER_STRING(x) mkChar(CHAR_TO_XMLCHAR (x)) ^~~~~~~~~~~~~~~~~~~ ./Utils.h:12:31: note: expanded from macro 'CHAR_TO_XMLCHAR' #define CHAR_TO_XMLCHAR(val) ((xmlChar *) val) ^~~~~~~~~~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:697:28: note: passing argument to parameter here SEXP Rf_mkChar(const char *); ^ schema.c:122:25: warning: passing 'const char *' to parameter of type 'const xmlChar *' (aka 'const unsigned char *') converts between pointers to integer types with different sign [-Wpointer-sign] p = xmlHashLookup(t, CHAR_DEREF(STRING_ELT(name, 0))); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./RSCommon.h:140:27: note: expanded from macro 'CHAR_DEREF' #define CHAR_DEREF(x) CHAR((x)) ^~~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:395:18: note: expanded from macro 'CHAR' #define CHAR(x) R_CHAR(x) ^~~~~~~~~ /sw/include/libxml2/libxml/hash.h:171:22: note: passing argument to parameter 'name' here const xmlChar *name); ^ 2 warnings generated. flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DLIBXML -I/sw/include/libxml2 -I/sw/include -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/sw/include -fPIC -g -O3 -c xmlsecurity.c -o xmlsecurity.o flag-sort -r gcc -ffor-scope -I/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include -DNDEBUG -DLIBXML -I/sw/include/libxml2 -I/sw/include -DUSE_EXTERNAL_SUBSET=1 -DROOT_HAS_DTD_NODE=1 -DDUMP_WITH_ENCODING=1 -DUSE_XML_VERSION_H=1 -DXML_ELEMENT_ETYPE=1 -DXML_ATTRIBUTE_ATYPE=1 -DNO_XML_HASH_SCANNER_RETURN=1 -DLIBXML_NAMESPACE_HAS_CONTEXT=1 -DHAVE_R_CETYPE_T=1 -DHAVE_XML_WITH_ZLIB=1 -DHAVE_XML_HAS_FEATURE=1 -DUSE_R=1 -D_R_=1 -DHAVE_VALIDITY=1 -DXML_REF_COUNT_NODES=1 -I. -DLIBXML2=1 -I/sw/include -fPIC -g -O3 -c xpath.c -o xpath.o xpath.c:36:41: warning: passing 'const xmlChar *' (aka 'const unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign] SET_NAMES(ref, ScalarString(mkCharCE(el->name, encoding))); ^~~~~~~~ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rdefines.h:135:54: note: expanded from macro 'SET_NAMES' #define SET_NAMES(x, n) setAttrib(x, R_NamesSymbol, n) ^ /sw/Library/Frameworks/R.framework/Versions/3.0/Resources/include/Rinternals.h:743:30: note: passing argument to parameter here SEXP Rf_mkCharCE(const char *, cetype_t); ^ 1 warning generated. flag-sort -r gcc -ffor-scope -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib -o XML.dylib DocParse.o EventParse.o ExpatParse.o HTMLParse.o NodeGC.o RSDTD.o RUtils.o Rcatalog.o Utils.o XMLEventParse.o XMLHashTree.o XMLTree.o fixNS.o libxmlFeatures.o schema.o xmlsecurity.o xpath.o -L/sw/lib -lxml2 -lz -lpthread -L/sw/lib -liconv -lm -lz -lxml2 -L/sw/Library/Frameworks/R.framework/Versions/3.0/Resources/lib -lR -lintl -Wl,-framework -Wl,CoreFoundation installing to /sw/build.build/root-cran-xml-r30-3.98-1.1-1/sw/lib/R/3.0/site-library/XML/libs ** R ** inst ** preparing package for lazy loading Creating a generic function for 'source' from package 'base' in package 'XML' in method for 'xmlAttrsToDataFrame' with signature '"AsIs"': no definition for class "AsIs" in method for 'readKeyValueDB' with signature '"AsIs"': no definition for class "AsIs" in method for 'readSolrDoc' with signature '"AsIs"': no definition for class "AsIs" ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (XML) install_name_tool -id /sw/lib/R/3.0/site-library/XML/libs/XML.dylib /sw/build.build/root-cran-xml-r30-3.98-1.1-1/sw/lib/R/3.0/site-library/XML/libs/XML.dylib sudo -u fink-bld [ENV] sh -c /tmp/fink.FK94P /bin/rm -f /sw/build.build/root-cran-xml-r30-3.98-1.1-1/sw/info/dir /sw/build.build/root-cran-xml-r30-3.98-1.1-1/sw/info/dir.old /sw/build.build/root-cran-xml-r30-3.98-1.1-1/sw/share/info/dir /sw/build.build/root-cran-xml-r30-3.98-1.1-1/sw/share/info/dir.old Reverting ownership of install dir to root Writing control file... Creating shlibs files... Writing md5sums file... env LANG=C LC_ALL=C dpkg-deb -b root-cran-xml-r30-3.98-1.1-1 /sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods dpkg-deb: building package `cran-xml-r30' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/libs/rmods/cran-xml-r30_3.98-1.1-1_darwin-x86_64.deb'. Removing runtime build-lock... Removing build-lock package... /sw/bin/dpkg-lockwait -r fink-buildlock-cran-xml-r30-3.98-1.1-1 (Reading database ... 11856 files and directories currently installed.) Removing fink-buildlock-cran-xml-r30-3.98-1.1-1 ...