printf '

' | fink --no-use-binary-dist --yes  --build-as-nobody rebuild emboss 2>&1
The package 'emboss' will be built without being installed.
Reading build dependency for emboss-6.5.7-105...
Reading dependency for emboss-6.5.7-105...
Reading dependency for emboss-libajax6-shlibs-6.5.7-105...
Reading dependency for emboss-libajax6-dev-6.5.7-105...
Reading dependency for emboss-libnucleus6-shlibs-6.5.7-105...
Reading dependency for emboss-libnucleus6-dev-6.5.7-105...
Reading build conflict for emboss-6.5.7-105...
The package 'autoconf2.6' will be installed.
Reading dependency for autoconf2.6-2.69-3...
Reading runtime dependency for autoconf2.6-2.69-3...
The package 'automake1.12' will be installed.
Reading dependency for automake1.12-1.12.6-3...
Reading runtime dependency for automake1.12-1.12.6-3...
The package 'fink-package-precedence' will be installed.
Reading dependency for fink-package-precedence-0.18-1...
Reading runtime dependency for fink-package-precedence-0.18-1...
The package 'expat1' will be installed.
Reading dependency for expat1-2.1.0-1...
Reading runtime dependency for expat1-2.1.0-1...
The package 'freetype219' will be installed.
Reading dependency for freetype219-2.4.12-1...
Reading runtime dependency for freetype219-2.4.12-1...
The package 'gd3' will be installed.
Reading dependency for gd3-2.1.0-1...
Reading runtime dependency for gd3-2.1.0-1...
The package 'libharu2.2.1-dev' will be installed.
Reading dependency for libharu2.2.1-dev-2.2.1-3...
Reading runtime dependency for libharu2.2.1-dev-2.2.1-3...
The package 'libpcre1' will be installed.
Reading dependency for libpcre1-8.35-1...
Reading runtime dependency for libpcre1-8.35-1...
The package 'libplplot10-dev' will be installed.
Reading dependency for libplplot10-dev-5.9.6-5...
Reading runtime dependency for libplplot10-dev-5.9.6-5...
The package 'libpng16' will be installed.
Reading dependency for libpng16-1.6.12-1...
Reading runtime dependency for libpng16-1.6.12-1...
The package 'libtool2' will be installed.
Reading dependency for libtool2-2.4.2-3...
Reading runtime dependency for libtool2-2.4.2-3...
The package 'mysql-unified-dev' will be installed.
Reading dependency for mysql-unified-dev-5.0.96-2...
Reading runtime dependency for mysql-unified-dev-5.0.96-2...
The package 'pkgconfig' will be installed.
Reading dependency for pkgconfig-0.28-1...
Reading runtime dependency for pkgconfig-0.28-1...
The package 'postgresql92-dev' will be installed.
Reading dependency for postgresql92-dev-9.2.8-1...
Reading runtime dependency for postgresql92-dev-9.2.8-1...
The package 'expat1-shlibs' will be installed.
Reading dependency for expat1-shlibs-2.1.0-1...
Reading runtime dependency for expat1-shlibs-2.1.0-1...
The package 'gd3-shlibs' will be installed.
Reading dependency for gd3-shlibs-2.1.0-1...
Reading runtime dependency for gd3-shlibs-2.1.0-1...
The package 'libharu2.2.1-shlibs' will be installed.
Reading dependency for libharu2.2.1-shlibs-2.2.1-3...
Reading runtime dependency for libharu2.2.1-shlibs-2.2.1-3...
The package 'libpcre1-shlibs' will be installed.
Reading dependency for libpcre1-shlibs-8.35-1...
Reading runtime dependency for libpcre1-shlibs-8.35-1...
The package 'libplplot10-shlibs' will be installed.
Reading dependency for libplplot10-shlibs-5.9.6-5...
Reading runtime dependency for libplplot10-shlibs-5.9.6-5...
The package 'libpng16-shlibs' will be installed.
Reading dependency for libpng16-shlibs-1.6.12-1...
Reading runtime dependency for libpng16-shlibs-1.6.12-1...
The package 'libtool2-shlibs' will be installed.
Reading dependency for libtool2-shlibs-2.4.2-3...
Reading runtime dependency for libtool2-shlibs-2.4.2-3...
The package 'mysql-unified-shlibs' will be installed.
Reading dependency for mysql-unified-shlibs-5.0.96-2...
Reading runtime dependency for mysql-unified-shlibs-5.0.96-2...
The package 'postgresql92-shlibs' will be installed.
Reading dependency for postgresql92-shlibs-9.2.8-1...
Reading runtime dependency for postgresql92-shlibs-9.2.8-1...
The package 'm4' will be installed.
Reading dependency for m4-1.4.17-1...
Reading runtime dependency for m4-1.4.17-1...
The package 'automake1.12-core' will be installed.
Reading dependency for automake1.12-core-1.12.6-3...
Reading runtime dependency for automake1.12-core-1.12.6-3...
The package 'freetype219-shlibs' will be installed.
Reading dependency for freetype219-shlibs-2.4.12-1...
Reading runtime dependency for freetype219-shlibs-2.4.12-1...
The package 'glib2-shlibs' will be installed.
Reading dependency for glib2-shlibs-2.22.4-8...
Reading runtime dependency for glib2-shlibs-2.22.4-8...
The package 'postgresql92' will be installed.
Reading dependency for postgresql92-9.2.8-1...
Reading runtime dependency for postgresql92-9.2.8-1...
The package 'fontconfig2-shlibs' will be installed.
Reading dependency for fontconfig2-shlibs-2.10.2-1...
Reading runtime dependency for fontconfig2-shlibs-2.10.2-1...
The package 'libjpeg9-shlibs' will be installed.
Reading dependency for libjpeg9-shlibs-9a-1...
Reading runtime dependency for libjpeg9-shlibs-9a-1...
The package 'libtiff5-shlibs' will be installed.
Reading dependency for libtiff5-shlibs-4.0.3-5...
Reading runtime dependency for libtiff5-shlibs-4.0.3-5...
The package 'aquaterm-shlibs' will be installed.
Reading dependency for aquaterm-shlibs-1.1.1-2...
Reading runtime dependency for aquaterm-shlibs-1.1.1-2...
The package 'cairo-shlibs' will be installed.
Reading dependency for cairo-shlibs-1.12.14-1...
Reading runtime dependency for cairo-shlibs-1.12.14-1...
The package 'lasi1-shlibs' will be installed.
Reading dependency for lasi1-shlibs-1.1.1-1...
Reading runtime dependency for lasi1-shlibs-1.1.1-1...
The package 'libcsiro1-shlibs' will be installed.
Reading dependency for libcsiro1-shlibs-5.9.6-5...
Reading runtime dependency for libcsiro1-shlibs-5.9.6-5...
The package 'pango1-xft2-ft219-shlibs' will be installed.
Reading dependency for pango1-xft2-ft219-shlibs-1.24.5-9...
Reading runtime dependency for pango1-xft2-ft219-shlibs-1.24.5-9...
The package 'qhull6.3.1-shlibs' will be installed.
Reading dependency for qhull6.3.1-shlibs-2012.1-3...
Reading runtime dependency for qhull6.3.1-shlibs-2012.1-3...
The package 'libsigsegv2-shlibs' will be installed.
Reading dependency for libsigsegv2-shlibs-2.6-5...
Reading runtime dependency for libsigsegv2-shlibs-2.6-5...
The package 'xdg-base' will be installed.
Reading dependency for xdg-base-0.8-2...
Reading runtime dependency for xdg-base-0.8-2...
The package 'daemonic' will be installed.
Reading dependency for daemonic-20010902-4...
Reading runtime dependency for daemonic-20010902-4...
The package 'libxml2-shlibs' will be installed.
Reading dependency for libxml2-shlibs-2.9.1-3...
Reading runtime dependency for libxml2-shlibs-2.9.1-3...
The package 'libxslt-shlibs' will be installed.
Reading dependency for libxslt-shlibs-1.1.28-2...
Reading runtime dependency for libxslt-shlibs-1.1.28-2...
The package 'passwd-postgres' will be installed.
Reading dependency for passwd-postgres-20131113-1...
Reading runtime dependency for passwd-postgres-20131113-1...
The package 'readline6-shlibs' will be installed.
Reading dependency for readline6-shlibs-6.3.6-1...
Reading runtime dependency for readline6-shlibs-6.3.6-1...
The package 'fontconfig-config' will be installed.
Reading dependency for fontconfig-config-2.10.2-1...
Reading runtime dependency for fontconfig-config-2.10.2-1...
The package 'libjbig-shlibs' will be installed.
Reading dependency for libjbig-shlibs-2.0-1...
Reading runtime dependency for libjbig-shlibs-2.0-1...
The package 'liblzma5-shlibs' will be installed.
Reading dependency for liblzma5-shlibs-5.0.5-2...
Reading runtime dependency for liblzma5-shlibs-5.0.5-2...
The package 'pixman-shlibs' will be installed.
Reading dependency for pixman-shlibs-0.32.4-1...
Reading runtime dependency for pixman-shlibs-0.32.4-1...
The package 'libthai-shlibs' will be installed.
Reading dependency for libthai-shlibs-0.1.20-1...
Reading runtime dependency for libthai-shlibs-0.1.20-1...
The package 'xft2-shlibs' will be installed.
Reading dependency for xft2-shlibs-2.2.0-3...
Reading runtime dependency for xft2-shlibs-2.2.0-3...
The package 'libxml2-bin' will be installed.
Reading dependency for libxml2-bin-2.9.1-3...
Reading runtime dependency for libxml2-bin-2.9.1-3...
The package 'passwd-core' will be installed.
Reading dependency for passwd-core-20131113-1...
Reading runtime dependency for passwd-core-20131113-1...
The package 'libdatrie1-shlibs' will be installed.
Reading dependency for libdatrie1-shlibs-0.2.8-2...
Reading runtime dependency for libdatrie1-shlibs-0.2.8-2...
The package 'libthai' will be installed.
Reading dependency for libthai-0.1.20-1...
Reading runtime dependency for libthai-0.1.20-1...
The package 'passwd-configs' will be installed.
Reading dependency for passwd-configs-20131113-1...
Reading runtime dependency for passwd-configs-20131113-1...
The following package will be rebuilt:
 emboss
The following 55 additional packages will be installed:
 aquaterm-shlibs autoconf2.6 automake1.12 automake1.12-core cairo-shlibs
 daemonic expat1 expat1-shlibs fink-package-precedence fontconfig-config
 fontconfig2-shlibs freetype219 freetype219-shlibs gd3 gd3-shlibs
 glib2-shlibs lasi1-shlibs libcsiro1-shlibs libdatrie1-shlibs
 libharu2.2.1-dev libharu2.2.1-shlibs libjbig-shlibs libjpeg9-shlibs
 liblzma5-shlibs libpcre1 libpcre1-shlibs libplplot10-dev libplplot10-shlibs
 libpng16 libpng16-shlibs libsigsegv2-shlibs libthai libthai-shlibs
 libtiff5-shlibs libtool2 libtool2-shlibs libxml2-bin libxml2-shlibs
 libxslt-shlibs m4 mysql-unified-dev mysql-unified-shlibs
 pango1-xft2-ft219-shlibs passwd-configs passwd-core passwd-postgres
 pixman-shlibs pkgconfig postgresql92 postgresql92-dev postgresql92-shlibs
 qhull6.3.1-shlibs readline6-shlibs xdg-base xft2-shlibs
Do you want to continue? [Y/n] (assuming default)
curl --connect-timeout 30 -f -L -A 'fink/0.37.0' -O http://distfiles.master.finkmirrors.net/distfiles/EMBOSS-6.5.7.tar.gz
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Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/aquaterm-shlibs_1.1.1-2_darwin-x86_64.deb
Selecting previously deselected package aquaterm-shlibs.
(Reading database ... 4740 files and directories currently installed.)
Unpacking aquaterm-shlibs (from .../aquaterm-shlibs_1.1.1-2_darwin-x86_64.deb) ...
Setting up aquaterm-shlibs (1.1.1-2) ...

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/debs/expat1_2.1.0-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/base/expat1-shlibs_2.1.0-1_darwin-x86_64.deb
Selecting previously deselected package expat1.
(Reading database ... 4761 files and directories currently installed.)
Unpacking expat1 (from .../expat1_2.1.0-1_darwin-x86_64.deb) ...
Selecting previously deselected package expat1-shlibs.
Unpacking expat1-shlibs (from .../expat1-shlibs_2.1.0-1_darwin-x86_64.deb) ...
Setting up expat1-shlibs (2.1.0-1) ...

Setting up expat1 (2.1.0-1) ...
Clearing dependency_libs of .la files being installed

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/debs/fink-package-precedence_0.18-1_darwin-x86_64.deb
Selecting previously deselected package fink-package-precedence.
(Reading database ... 4783 files and directories currently installed.)
Unpacking fink-package-precedence (from .../fink-package-precedence_0.18-1_darwin-x86_64.deb) ...
Setting up fink-package-precedence (0.18-1) ...

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/debs/freetype219_2.4.12-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/freetype219-shlibs_2.4.12-1_darwin-x86_64.deb
Selecting previously deselected package freetype219.
(Reading database ... 4784 files and directories currently installed.)
Unpacking freetype219 (from .../freetype219_2.4.12-1_darwin-x86_64.deb) ...
Selecting previously deselected package freetype219-shlibs.
Unpacking freetype219-shlibs (from .../freetype219-shlibs_2.4.12-1_darwin-x86_64.deb) ...
Setting up freetype219-shlibs (2.4.12-1) ...

Setting up freetype219 (2.4.12-1) ...
Clearing dependency_libs of .la files being installed

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libdatrie1-shlibs_0.2.8-2_darwin-x86_64.deb
Selecting previously deselected package libdatrie1-shlibs.
(Reading database ... 4982 files and directories currently installed.)
Unpacking libdatrie1-shlibs (from .../libdatrie1-shlibs_0.2.8-2_darwin-x86_64.deb) ...
Setting up libdatrie1-shlibs (0.2.8-2) ...

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjbig-shlibs_2.0-1_darwin-x86_64.deb
Selecting previously deselected package libjbig-shlibs.
(Reading database ... 4989 files and directories currently installed.)
Unpacking libjbig-shlibs (from .../libjbig-shlibs_2.0-1_darwin-x86_64.deb) ...
Setting up libjbig-shlibs (2.0-1) ...

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libjpeg9-shlibs_9a-1_darwin-x86_64.deb
Selecting previously deselected package libjpeg9-shlibs.
(Reading database ... 4996 files and directories currently installed.)
Unpacking libjpeg9-shlibs (from .../libjpeg9-shlibs_9a-1_darwin-x86_64.deb) ...
Setting up libjpeg9-shlibs (9a-1) ...

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/utils/liblzma5-shlibs_5.0.5-2_darwin-x86_64.deb
Selecting previously deselected package liblzma5-shlibs.
(Reading database ... 4999 files and directories currently installed.)
Unpacking liblzma5-shlibs (from .../liblzma5-shlibs_5.0.5-2_darwin-x86_64.deb) ...
Setting up liblzma5-shlibs (5.0.5-2) ...

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/debs/libpcre1_8.35-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libpcre1-shlibs_8.35-1_darwin-x86_64.deb
Selecting previously deselected package libpcre1.
(Reading database ... 5010 files and directories currently installed.)
Unpacking libpcre1 (from .../libpcre1_8.35-1_darwin-x86_64.deb) ...
Selecting previously deselected package libpcre1-shlibs.
Unpacking libpcre1-shlibs (from .../libpcre1-shlibs_8.35-1_darwin-x86_64.deb) ...
Setting up libpcre1-shlibs (8.35-1) ...

Setting up libpcre1 (8.35-1) ...
Clearing dependency_libs of .la files being installed

Reading buildlock packages...
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libsigsegv2-shlibs_2.6-5_darwin-x86_64.deb
Selecting previously deselected package libsigsegv2-shlibs.
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Unpacking libsigsegv2-shlibs (from .../libsigsegv2-shlibs_2.6-5_darwin-x86_64.deb) ...
Setting up libsigsegv2-shlibs (2.6-5) ...

Reading buildlock packages...
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libthai-shlibs_0.1.20-1_darwin-x86_64.deb /sw/fink/debs/libthai_0.1.20-1_darwin-x86_64.deb
Selecting previously deselected package libthai-shlibs.
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Unpacking libthai-shlibs (from .../libthai-shlibs_0.1.20-1_darwin-x86_64.deb) ...
Selecting previously deselected package libthai.
Unpacking libthai (from .../libthai_0.1.20-1_darwin-x86_64.deb) ...
Setting up libthai (0.1.20-1) ...

Setting up libthai-shlibs (0.1.20-1) ...

Reading buildlock packages...
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/sw/bin/dpkg-lockwait -i /sw/fink/debs/libtiff5-shlibs_4.0.3-5_darwin-x86_64.deb
Selecting previously deselected package libtiff5-shlibs.
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Unpacking libtiff5-shlibs (from .../libtiff5-shlibs_4.0.3-5_darwin-x86_64.deb) ...
Setting up libtiff5-shlibs (4.0.3-5) ...

Reading buildlock packages...
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/sw/bin/dpkg-lockwait -i /sw/fink/debs/libtool2_2.4.2-3_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/devel/libtool2-shlibs_2.4.2-3_darwin-x86_64.deb
Selecting previously deselected package libtool2.
(Reading database ... 5252 files and directories currently installed.)
Unpacking libtool2 (from .../libtool2_2.4.2-3_darwin-x86_64.deb) ...
Selecting previously deselected package libtool2-shlibs.
Unpacking libtool2-shlibs (from .../libtool2-shlibs_2.4.2-3_darwin-x86_64.deb) ...
Setting up libtool2-shlibs (2.4.2-3) ...

Setting up libtool2 (2.4.2-3) ...
Clearing dependency_libs of .la files being installed
* Libtool: (libtool). Generic shared library support script.
install-info(/sw/share/info/libtool.info): creating new section `GNU programming tools'

Reading buildlock packages...
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/sw/bin/dpkg-lockwait -i /sw/fink/debs/m4_1.4.17-1_darwin-x86_64.deb
Selecting previously deselected package m4.
(Reading database ... 5341 files and directories currently installed.)
Unpacking m4 (from .../m4_1.4.17-1_darwin-x86_64.deb) ...
Setting up m4 (1.4.17-1) ...
* M4: (m4). A powerful macro processor.

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/database/mysql-unified-dev_5.0.96-2_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/database/mysql-unified-shlibs_5.0.96-2_darwin-x86_64.deb
Selecting previously deselected package mysql-unified-dev.
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Unpacking mysql-unified-dev (from .../mysql-unified-dev_5.0.96-2_darwin-x86_64.deb) ...
Selecting previously deselected package mysql-unified-shlibs.
Unpacking mysql-unified-shlibs (from .../mysql-unified-shlibs_5.0.96-2_darwin-x86_64.deb) ...
Setting up mysql-unified-shlibs (5.0.96-2) ...

Setting up mysql-unified-dev (5.0.96-2) ...
Clearing dependency_libs of .la files being installed

Reading buildlock packages...
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/sw/bin/dpkg-lockwait -i /sw/fink/debs/passwd-configs_20131113-1_darwin-x86_64.deb
Selecting previously deselected package passwd-configs.
(Reading database ... 5448 files and directories currently installed.)
Unpacking passwd-configs (from .../passwd-configs_20131113-1_darwin-x86_64.deb) ...
Setting up passwd-configs (20131113-1) ...

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/debs/passwd-core_20131113-1_darwin-x86_64.deb
Selecting previously deselected package passwd-core.
(Reading database ... 5453 files and directories currently installed.)
Unpacking passwd-core (from .../passwd-core_20131113-1_darwin-x86_64.deb) ...
Setting up passwd-core (20131113-1) ...
Using existing /sw/etc/passwd.conf settings.
If you want to reset them, remove that file and run
'fink reinstall passwd-core'.
Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/debs/passwd-postgres_20131113-1_darwin-x86_64.deb
Selecting previously deselected package passwd-postgres.
(Reading database ... 5460 files and directories currently installed.)
Unpacking passwd-postgres (from .../passwd-postgres_20131113-1_darwin-x86_64.deb) ...
Setting up passwd-postgres (20131113-1) ...
'postgres' user exists, with parameters:
uid=602(postgres) gid=602(postgres) groups=602(postgres),12(everyone),61(localaccounts),100(_lpoperator),402(com.apple.sharepoint.group.1)
Fink will use these settings.

'postgres' group exists, with parameters:

AppleMetaNodeLocation: /Local/Default
GeneratedUID: A930A0A0-E4E1-48DF-A1A5-B4CC27AD8001
GroupMembership: postgres
Password: *
PrimaryGroupID: 602
RecordName: postgres
RecordType: dsRecTypeStandard:Groups

Fink will use these settings.

Using existing entry for 'postgres' user/group.


Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/pixman-shlibs_0.32.4-1_darwin-x86_64.deb
Selecting previously deselected package pixman-shlibs.
(Reading database ... 5463 files and directories currently installed.)
Unpacking pixman-shlibs (from .../pixman-shlibs_0.32.4-1_darwin-x86_64.deb) ...
Setting up pixman-shlibs (0.32.4-1) ...

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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/qhull6.3.1-shlibs_2012.1-3_darwin-x86_64.deb
Selecting previously deselected package qhull6.3.1-shlibs.
(Reading database ... 5467 files and directories currently installed.)
Unpacking qhull6.3.1-shlibs (from .../qhull6.3.1-shlibs_2012.1-3_darwin-x86_64.deb) ...
Setting up qhull6.3.1-shlibs (2012.1-3) ...

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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/readline6-shlibs_6.3.6-1_darwin-x86_64.deb
Selecting previously deselected package readline6-shlibs.
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Unpacking readline6-shlibs (from .../readline6-shlibs_6.3.6-1_darwin-x86_64.deb) ...
Setting up readline6-shlibs (6.3.6-1) ...

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/debs/xdg-base_0.8-2_darwin-x86_64.deb
Selecting previously deselected package xdg-base.
(Reading database ... 5485 files and directories currently installed.)
Unpacking xdg-base (from .../xdg-base_0.8-2_darwin-x86_64.deb) ...
Setting up xdg-base (0.8-2) ...

Reading buildlock packages...
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/sw/bin/dpkg-lockwait -i /sw/fink/debs/autoconf2.6_2.69-3_darwin-x86_64.deb
Selecting previously deselected package autoconf2.6.
(Reading database ... 5487 files and directories currently installed.)
Unpacking autoconf2.6 (from .../autoconf2.6_2.69-3_darwin-x86_64.deb) ...
Setting up autoconf2.6 (2.69-3) ...
* Autoconf: (autoconf). Create source code configuration scripts.
* Standards: (standards). GNU coding standards.
install-info(/sw/share/info/standards.info): creating new section `GNU organization'

Reading buildlock packages...
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/sw/bin/dpkg-lockwait -i /sw/fink/debs/automake1.12_1.12.6-3_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/devel/automake1.12-core_1.12.6-3_darwin-x86_64.deb
Selecting previously deselected package automake1.12.
(Reading database ... 5571 files and directories currently installed.)
Unpacking automake1.12 (from .../automake1.12_1.12.6-3_darwin-x86_64.deb) ...
Selecting previously deselected package automake1.12-core.
Unpacking automake1.12-core (from .../automake1.12-core_1.12.6-3_darwin-x86_64.deb) ...
Setting up automake1.12-core (1.12.6-3) ...

Setting up automake1.12 (1.12.6-3) ...
* Automake: (automake). Making GNU standards-compliant Makefiles.

Reading buildlock packages...
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig2-shlibs_2.10.2-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/fontconfig-config_2.10.2-1_darwin-x86_64.deb
Selecting previously deselected package fontconfig2-shlibs.
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Unpacking fontconfig2-shlibs (from .../fontconfig2-shlibs_2.10.2-1_darwin-x86_64.deb) ...
Selecting previously deselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.10.2-1_darwin-x86_64.deb) ...
Setting up fontconfig-config (2.10.2-1) ...

Setting up fontconfig2-shlibs (2.10.2-1) ...

Reading buildlock packages...
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/sw/bin/dpkg-lockwait -i /sw/fink/debs/glib2-shlibs_2.22.4-8_darwin-x86_64.deb
Selecting previously deselected package glib2-shlibs.
(Reading database ... 5801 files and directories currently installed.)
Unpacking glib2-shlibs (from .../glib2-shlibs_2.22.4-8_darwin-x86_64.deb) ...
Setting up glib2-shlibs (2.22.4-8) ...

Reading buildlock packages...
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libxml2-bin_2.9.1-3_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libxml2-shlibs_2.9.1-3_darwin-x86_64.deb
Selecting previously deselected package libxml2-bin.
(Reading database ... 6028 files and directories currently installed.)
Unpacking libxml2-bin (from .../libxml2-bin_2.9.1-3_darwin-x86_64.deb) ...
Selecting previously deselected package libxml2-shlibs.
Unpacking libxml2-shlibs (from .../libxml2-shlibs_2.9.1-3_darwin-x86_64.deb) ...
Setting up libxml2-shlibs (2.9.1-3) ...

Setting up libxml2-bin (2.9.1-3) ...

Reading buildlock packages...
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/libs/libxslt-shlibs_1.1.28-2_darwin-x86_64.deb
Selecting previously deselected package libxslt-shlibs.
(Reading database ... 6045 files and directories currently installed.)
Unpacking libxslt-shlibs (from .../libxslt-shlibs_1.1.28-2_darwin-x86_64.deb) ...
Setting up libxslt-shlibs (1.1.28-2) ...

Reading buildlock packages...
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/sw/bin/dpkg-lockwait -i /sw/fink/debs/pkgconfig_0.28-1_darwin-x86_64.deb
Selecting previously deselected package pkgconfig.
(Reading database ... 6057 files and directories currently installed.)
Unpacking pkgconfig (from .../pkgconfig_0.28-1_darwin-x86_64.deb) ...
Setting up pkgconfig (0.28-1) ...

Reading buildlock packages...
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/xft2-shlibs_2.2.0-3_darwin-x86_64.deb
Selecting previously deselected package xft2-shlibs.
(Reading database ... 6070 files and directories currently installed.)
Unpacking xft2-shlibs (from .../xft2-shlibs_2.2.0-3_darwin-x86_64.deb) ...
Setting up xft2-shlibs (2.2.0-3) ...

Reading buildlock packages...
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/sw/bin/dpkg-lockwait -i /sw/fink/debs/daemonic_20010902-4_darwin-x86_64.deb
Selecting previously deselected package daemonic.
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Setting up daemonic (20010902-4) ...

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/sw/bin/dpkg-lockwait -i /sw/fink/debs/libpng16_1.6.12-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/libpng16-shlibs_1.6.12-1_darwin-x86_64.deb
Selecting previously deselected package libpng16.
(Reading database ... 6083 files and directories currently installed.)
Unpacking libpng16 (from .../libpng16_1.6.12-1_darwin-x86_64.deb) ...
Selecting previously deselected package libpng16-shlibs.
Unpacking libpng16-shlibs (from .../libpng16-shlibs_1.6.12-1_darwin-x86_64.deb) ...
Setting up libpng16-shlibs (1.6.12-1) ...

Setting up libpng16 (1.6.12-1) ...
Clearing dependency_libs of .la files being installed

Reading buildlock packages...
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/database/postgresql92-dev_9.2.8-1_darwin-x86_64.deb /sw/fink/debs/postgresql92_9.2.8-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/database/postgresql92-shlibs_9.2.8-1_darwin-x86_64.deb
Selecting previously deselected package postgresql92-dev.
(Reading database ... 6120 files and directories currently installed.)
Unpacking postgresql92-dev (from .../postgresql92-dev_9.2.8-1_darwin-x86_64.deb) ...
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Unpacking postgresql92 (from .../postgresql92_9.2.8-1_darwin-x86_64.deb) ...
Selecting previously deselected package postgresql92-shlibs.
Unpacking postgresql92-shlibs (from .../postgresql92-shlibs_9.2.8-1_darwin-x86_64.deb) ...
Setting up postgresql92-shlibs (9.2.8-1) ...

Setting up postgresql92 (9.2.8-1) ...
- starting PostgreSQL on port 14414
- attempting to install the plpgsql language in the template1 database... 
Setting up postgresql92-dev (9.2.8-1) ...

Reading buildlock packages...
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/cairo-shlibs_1.12.14-1_darwin-x86_64.deb
Selecting previously deselected package cairo-shlibs.
(Reading database ... 7633 files and directories currently installed.)
Unpacking cairo-shlibs (from .../cairo-shlibs_1.12.14-1_darwin-x86_64.deb) ...
Setting up cairo-shlibs (1.12.14-1) ...

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/debs/gd3_2.1.0-1_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/graphics/gd3-shlibs_2.1.0-1_darwin-x86_64.deb
Selecting previously deselected package gd3.
(Reading database ... 7652 files and directories currently installed.)
Unpacking gd3 (from .../gd3_2.1.0-1_darwin-x86_64.deb) ...
Selecting previously deselected package gd3-shlibs.
Unpacking gd3-shlibs (from .../gd3-shlibs_2.1.0-1_darwin-x86_64.deb) ...
Setting up gd3-shlibs (2.1.0-1) ...

Setting up gd3 (2.1.0-1) ...
Clearing dependency_libs of .la files being installed

Reading buildlock packages...
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/text/libharu2.2.1-dev_2.2.1-3_darwin-x86_64.deb /sw/fink/debs/libharu2.2.1-shlibs_2.2.1-3_darwin-x86_64.deb
Selecting previously deselected package libharu2.2.1-dev.
(Reading database ... 7678 files and directories currently installed.)
Unpacking libharu2.2.1-dev (from .../libharu2.2.1-dev_2.2.1-3_darwin-x86_64.deb) ...
Selecting previously deselected package libharu2.2.1-shlibs.
Unpacking libharu2.2.1-shlibs (from .../libharu2.2.1-shlibs_2.2.1-3_darwin-x86_64.deb) ...
Setting up libharu2.2.1-shlibs (2.2.1-3) ...

Setting up libharu2.2.1-dev (2.2.1-3) ...
Clearing dependency_libs of .la files being installed

Reading buildlock packages...
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/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/gnome/pango1-xft2-ft219-shlibs_1.24.5-9_darwin-x86_64.deb
Selecting previously deselected package pango1-xft2-ft219-shlibs.
(Reading database ... 7715 files and directories currently installed.)
Unpacking pango1-xft2-ft219-shlibs (from .../pango1-xft2-ft219-shlibs_1.24.5-9_darwin-x86_64.deb) ...
Setting up pango1-xft2-ft219-shlibs (1.24.5-9) ...
Clearing dependency_libs of .la files being installed

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/debs/lasi1-shlibs_1.1.1-1_darwin-x86_64.deb
Selecting previously deselected package lasi1-shlibs.
(Reading database ... 7759 files and directories currently installed.)
Unpacking lasi1-shlibs (from .../lasi1-shlibs_1.1.1-1_darwin-x86_64.deb) ...
Setting up lasi1-shlibs (1.1.1-1) ...

Reading buildlock packages...
	All buildlocks accounted for.
/sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/libplplot10-dev_5.9.6-5_darwin-x86_64.deb /sw/fink/debs/libplplot10-shlibs_5.9.6-5_darwin-x86_64.deb /sw/fink/dists/stable/main/binary-darwin-x86_64/sci/libcsiro1-shlibs_5.9.6-5_darwin-x86_64.deb
Selecting previously deselected package libplplot10-dev.
(Reading database ... 7769 files and directories currently installed.)
Unpacking libplplot10-dev (from .../libplplot10-dev_5.9.6-5_darwin-x86_64.deb) ...
Selecting previously deselected package libplplot10-shlibs.
Unpacking libplplot10-shlibs (from .../libplplot10-shlibs_5.9.6-5_darwin-x86_64.deb) ...
Selecting previously deselected package libcsiro1-shlibs.
Unpacking libcsiro1-shlibs (from .../libcsiro1-shlibs_5.9.6-5_darwin-x86_64.deb) ...
Setting up libcsiro1-shlibs (5.9.6-5) ...

Setting up libplplot10-shlibs (5.9.6-5) ...

Setting up libplplot10-dev (5.9.6-5) ...

Setting runtime build-lock...
dpkg-deb -b /sw/build.build/root-fink-buildlock-emboss-6.5.7-105 /sw/build.build
dpkg-deb: building package `fink-buildlock-emboss-6.5.7-105' in `/sw/build.build/fink-buildlock-emboss-6.5.7-105_2014.08.07-03.55.45_darwin-x86_64.deb'.
Installing build-lock package...
/sw/bin/dpkg-lockwait -i /sw/build.build/fink-buildlock-emboss-6.5.7-105_2014.08.07-03.55.45_darwin-x86_64.deb
Selecting previously deselected package fink-buildlock-emboss-6.5.7-105.
(Reading database ... 7991 files and directories currently installed.)
Unpacking fink-buildlock-emboss-6.5.7-105 (from .../fink-buildlock-emboss-6.5.7-105_2014.08.07-03.55.45_darwin-x86_64.deb) ...
Setting up fink-buildlock-emboss-6.5.7-105 (2014.08.07-03.55.45) ...

sudo -u fink-bld [ENV] sh -c /tmp/fink.w383B
env LANG=C LC_ALL=C /sw/bin/tar  --no-same-owner --no-same-permissions -xvf /sw/src/EMBOSS-6.5.7.tar.gz
EMBOSS-6.5.7/
EMBOSS-6.5.7/NEWS
EMBOSS-6.5.7/PROBLEMS
EMBOSS-6.5.7/FAQ
EMBOSS-6.5.7/doc/
EMBOSS-6.5.7/doc/Makefile.in
EMBOSS-6.5.7/doc/Makefile
EMBOSS-6.5.7/doc/Makefile.am
EMBOSS-6.5.7/doc/programs/
EMBOSS-6.5.7/doc/programs/emboss_icon.jpg
EMBOSS-6.5.7/doc/programs/Makefile.in
EMBOSS-6.5.7/doc/programs/Makefile
EMBOSS-6.5.7/doc/programs/emboss_icon.gif
EMBOSS-6.5.7/doc/programs/Makefile.am
EMBOSS-6.5.7/doc/programs/master/
EMBOSS-6.5.7/doc/programs/master/emboss/
EMBOSS-6.5.7/doc/programs/master/emboss/apps/
EMBOSS-6.5.7/doc/programs/master/emboss/apps/dbshowquery.html
EMBOSS-6.5.7/doc/programs/master/emboss/apps/data_resources_group.html
EMBOSS-6.5.7/doc/programs/master/emboss/apps/chips.html
EMBOSS-6.5.7/doc/programs/master/emboss/apps/preg.html
EMBOSS-6.5.7/doc/programs/master/emboss/apps/data_retrieval_url_data_group.html
EMBOSS-6.5.7/doc/programs/master/emboss/apps/banana.html
EMBOSS-6.5.7/doc/programs/master/emboss/apps/polydot.1.polydot.gif
EMBOSS-6.5.7/doc/programs/master/emboss/apps/nospace.html
EMBOSS-6.5.7/doc/programs/master/emboss/apps/dbxflat.html
EMBOSS-6.5.7/doc/programs/master/emboss/apps/consambig.html
EMBOSS-6.5.7/doc/programs/master/emboss/apps/marscan.html
EMBOSS-6.5.7/doc/programs/master/emboss/apps/dbxcompress.html
EMBOSS-6.5.7/doc/programs/master/emboss/apps/textvalid.html
EMBOSS-6.5.7/doc/programs/master/emboss/apps/utils_group.html
EMBOSS-6.5.7/doc/programs/master/emboss/apps/yank.html
EMBOSS-6.5.7/doc/programs/master/emboss/apps/featmerge.html
EMBOSS-6.5.7/doc/programs/master/emboss/apps/servertell.html
EMBOSS-6.5.7/doc/programs/master/emboss/apps/matcher.html
EMBOSS-6.5.7/doc/programs/master/emboss/apps/skipredundant.html
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EMBOSS-6.5.7/emboss/freak.c
EMBOSS-6.5.7/emboss/server.ensembl
EMBOSS-6.5.7/emboss/pepinfo.c
EMBOSS-6.5.7/emboss/taxgetdown.c
EMBOSS-6.5.7/emboss/tranalign.c
EMBOSS-6.5.7/emboss/einverted.c
EMBOSS-6.5.7/emboss/edamclean.c
EMBOSS-6.5.7/emboss/backtranseq.c
EMBOSS-6.5.7/emboss/COPYING
EMBOSS-6.5.7/emboss/ontogetobsolete.c
EMBOSS-6.5.7/emboss/printsextract.c
EMBOSS-6.5.7/emboss/server.srs
EMBOSS-6.5.7/emboss/prosextract.c
EMBOSS-6.5.7/emboss/data/
EMBOSS-6.5.7/emboss/data/EPAM450
EMBOSS-6.5.7/emboss/data/EPAM350
EMBOSS-6.5.7/emboss/data/EBLOSUM65
EMBOSS-6.5.7/emboss/data/EDNAMAT
EMBOSS-6.5.7/emboss/data/EPAM320
EMBOSS-6.5.7/emboss/data/Efreqs.dat
EMBOSS-6.5.7/emboss/data/EPAM430
EMBOSS-6.5.7/emboss/data/Etags.pir
EMBOSS-6.5.7/emboss/data/Eaa_acc_surface.dat
EMBOSS-6.5.7/emboss/data/EGC.0
EMBOSS-6.5.7/emboss/data/EPAM340
EMBOSS-6.5.7/emboss/data/Ememe.dat
EMBOSS-6.5.7/emboss/data/JASPAR_SPLICE/
EMBOSS-6.5.7/emboss/data/JASPAR_SPLICE/dummyfile
EMBOSS-6.5.7/emboss/data/JASPAR_SPLICE/Makefile.in
EMBOSS-6.5.7/emboss/data/JASPAR_SPLICE/Makefile.am
EMBOSS-6.5.7/emboss/data/Etags.emboss
EMBOSS-6.5.7/emboss/data/Etags.gff3
EMBOSS-6.5.7/emboss/data/EPAM310
EMBOSS-6.5.7/emboss/data/Enewcoils.mat
EMBOSS-6.5.7/emboss/data/EPAM70
EMBOSS-6.5.7/emboss/data/EBLOSUMN
EMBOSS-6.5.7/emboss/data/EGC.5
EMBOSS-6.5.7/emboss/data/EBLOSUM45
EMBOSS-6.5.7/emboss/data/edamtoacd.dat
EMBOSS-6.5.7/emboss/data/EBLOSUM30
EMBOSS-6.5.7/emboss/data/sofa.obo
EMBOSS-6.5.7/emboss/data/tp400_prot
EMBOSS-6.5.7/emboss/data/EPAM460
EMBOSS-6.5.7/emboss/data/JASPAR_PBM_HOMEO/
EMBOSS-6.5.7/emboss/data/JASPAR_PBM_HOMEO/dummyfile
EMBOSS-6.5.7/emboss/data/JASPAR_PBM_HOMEO/Makefile.in
EMBOSS-6.5.7/emboss/data/JASPAR_PBM_HOMEO/Makefile.am
EMBOSS-6.5.7/emboss/data/Ehth.dat
EMBOSS-6.5.7/emboss/data/CODONS/
EMBOSS-6.5.7/emboss/data/CODONS/Echltr.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ecrigr.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eeca.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ebsu_h.cut
EMBOSS-6.5.7/emboss/data/CODONS/Etob.cut
EMBOSS-6.5.7/emboss/data/CODONS/Espu.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ehorvu.cut
EMBOSS-6.5.7/emboss/data/CODONS/Encr.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eric.cut
EMBOSS-6.5.7/emboss/data/CODONS/Edrome.cut
EMBOSS-6.5.7/emboss/data/CODONS/Erhm.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ecloab.cut
EMBOSS-6.5.7/emboss/data/CODONS/Efmdvpolyp.cut
EMBOSS-6.5.7/emboss/data/CODONS/Epea.cut
EMBOSS-6.5.7/emboss/data/CODONS/Esta.cut
EMBOSS-6.5.7/emboss/data/CODONS/Echnt.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ebpphx.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ebrana.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eklepn.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eppu.cut
EMBOSS-6.5.7/emboss/data/CODONS/Estaau.cut
EMBOSS-6.5.7/emboss/data/CODONS/Epot.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eavi.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eysc_h.cut
EMBOSS-6.5.7/emboss/data/CODONS/Epsesm.cut
EMBOSS-6.5.7/emboss/data/CODONS/Efish.cut
EMBOSS-6.5.7/emboss/data/CODONS/Emixlg.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eemeni_mit.cut
EMBOSS-6.5.7/emboss/data/CODONS/Etobac.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eorysa.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eplafa.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ekla.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ebme.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eemeni.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eshp.cut
EMBOSS-6.5.7/emboss/data/CODONS/Echos.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eadenovirus5.cut
EMBOSS-6.5.7/emboss/data/CODONS/Exenla.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eoncsp.cut
EMBOSS-6.5.7/emboss/data/CODONS/Emyctu.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eter.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eyeastcai.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eecoli.cut
EMBOSS-6.5.7/emboss/data/CODONS/Echlre.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eratsp.cut
EMBOSS-6.5.7/emboss/data/CODONS/Emacfa.cut
EMBOSS-6.5.7/emboss/data/CODONS/Elyces.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ecel.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ebov.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ewheat.cut
EMBOSS-6.5.7/emboss/data/CODONS/Emze.cut
EMBOSS-6.5.7/emboss/data/CODONS/Cut.index
EMBOSS-6.5.7/emboss/data/CODONS/Ebacme.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ecanal.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eschma.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ebrare.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eyeast_mit.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eyeast_cai.cut
EMBOSS-6.5.7/emboss/data/CODONS/Esau.cut
EMBOSS-6.5.7/emboss/data/CODONS/Makefile.in
EMBOSS-6.5.7/emboss/data/CODONS/Esco.cut
EMBOSS-6.5.7/emboss/data/CODONS/Esgi.cut
EMBOSS-6.5.7/emboss/data/CODONS/Emta.cut
EMBOSS-6.5.7/emboss/data/CODONS/Emva.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eacc.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ebst.cut
EMBOSS-6.5.7/emboss/data/CODONS/Evibch.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eschpo_high.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eyen.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ehalma.cut
EMBOSS-6.5.7/emboss/data/CODONS/Espn.cut
EMBOSS-6.5.7/emboss/data/CODONS/Esynsp.cut
EMBOSS-6.5.7/emboss/data/CODONS/Etrybr.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eyeast_high.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ebja.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ectr.cut
EMBOSS-6.5.7/emboss/data/CODONS/Makefile.am
EMBOSS-6.5.7/emboss/data/CODONS/Eysp.cut
EMBOSS-6.5.7/emboss/data/CODONS/Edro_h.cut
EMBOSS-6.5.7/emboss/data/CODONS/Erca.cut
EMBOSS-6.5.7/emboss/data/CODONS/Epsy.cut
EMBOSS-6.5.7/emboss/data/CODONS/Emsa.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eorysa_chl.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eath.cut
EMBOSS-6.5.7/emboss/data/CODONS/Emouse.cut
EMBOSS-6.5.7/emboss/data/CODONS/Etrb.cut
EMBOSS-6.5.7/emboss/data/CODONS/Edicdi.cut
EMBOSS-6.5.7/emboss/data/CODONS/Epombecai.cut
EMBOSS-6.5.7/emboss/data/CODONS/Esus.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ezma.cut
EMBOSS-6.5.7/emboss/data/CODONS/Etetth.cut
EMBOSS-6.5.7/emboss/data/CODONS/Etobac_chl.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eemeni_high.cut
EMBOSS-6.5.7/emboss/data/CODONS/Erabit.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eeco_h.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eprovu.cut
EMBOSS-6.5.7/emboss/data/CODONS/Emarpo_chl.cut
EMBOSS-6.5.7/emboss/data/CODONS/Etbr.cut
EMBOSS-6.5.7/emboss/data/CODONS/Epet.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eagrtu.cut
EMBOSS-6.5.7/emboss/data/CODONS/Epsepu.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ecal.cut
EMBOSS-6.5.7/emboss/data/CODONS/Edrome_high.cut
EMBOSS-6.5.7/emboss/data/CODONS/Esyncy.cut
EMBOSS-6.5.7/emboss/data/CODONS/Epfa.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ephy.cut
EMBOSS-6.5.7/emboss/data/CODONS/Esalsa.cut
EMBOSS-6.5.7/emboss/data/CODONS/Easn.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eschpo.cut
EMBOSS-6.5.7/emboss/data/CODONS/Emaize.cut
EMBOSS-6.5.7/emboss/data/CODONS/Etrycr.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ecyapa.cut
EMBOSS-6.5.7/emboss/data/CODONS/Etheth.cut
EMBOSS-6.5.7/emboss/data/CODONS/Echmp.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eazovi.cut
EMBOSS-6.5.7/emboss/data/CODONS/Erhoca.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eyscmt.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ephavu.cut
EMBOSS-6.5.7/emboss/data/CODONS/Emetth.cut
EMBOSS-6.5.7/emboss/data/CODONS/Edayhoff.cut
EMBOSS-6.5.7/emboss/data/CODONS/Epse.cut
EMBOSS-6.5.7/emboss/data/CODONS/Esheep.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eaidlav.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ebacsu_high.cut
EMBOSS-6.5.7/emboss/data/CODONS/Esma.cut
EMBOSS-6.5.7/emboss/data/CODONS/Evco.cut
EMBOSS-6.5.7/emboss/data/CODONS/Echick.cut
EMBOSS-6.5.7/emboss/data/CODONS/Edrosophila.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ecrisp.cut
EMBOSS-6.5.7/emboss/data/CODONS/Emedsa.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ekpn.cut
EMBOSS-6.5.7/emboss/data/CODONS/Edro.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ella.cut
EMBOSS-6.5.7/emboss/data/CODONS/Emus.cut
EMBOSS-6.5.7/emboss/data/CODONS/Esty.cut
EMBOSS-6.5.7/emboss/data/CODONS/Echk.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ebommo.cut
EMBOSS-6.5.7/emboss/data/CODONS/Espiol.cut
EMBOSS-6.5.7/emboss/data/CODONS/Esynco.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ecaeel.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ebacst.cut
EMBOSS-6.5.7/emboss/data/CODONS/Espo_h.cut
EMBOSS-6.5.7/emboss/data/CODONS/Emussp.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ecaucr.cut
EMBOSS-6.5.7/emboss/data/CODONS/Etetsp.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eslm.cut
EMBOSS-6.5.7/emboss/data/CODONS/Epvu.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eatu.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ezebrafish.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eyerpe.cut
EMBOSS-6.5.7/emboss/data/CODONS/Esoy.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eacica.cut
EMBOSS-6.5.7/emboss/data/CODONS/Epombe.cut
EMBOSS-6.5.7/emboss/data/CODONS/Estrmu.cut
EMBOSS-6.5.7/emboss/data/CODONS/Erme.cut
EMBOSS-6.5.7/emboss/data/CODONS/Etom.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eham.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ecac.cut
EMBOSS-6.5.7/emboss/data/CODONS/Etcr.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eecoli_high.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eanasp.cut
EMBOSS-6.5.7/emboss/data/CODONS/Echisp.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eschpo_cai.cut
EMBOSS-6.5.7/emboss/data/CODONS/Erhile.cut
EMBOSS-6.5.7/emboss/data/CODONS/Exenopus.cut
EMBOSS-6.5.7/emboss/data/CODONS/Epig.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eerwct.cut
EMBOSS-6.5.7/emboss/data/CODONS/Earath.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ebna.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eyeren.cut
EMBOSS-6.5.7/emboss/data/CODONS/Estrpn.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eani_h.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eddi_h.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eadenovirus7.cut
EMBOSS-6.5.7/emboss/data/CODONS/Esyhsp.cut
EMBOSS-6.5.7/emboss/data/CODONS/Echzm.cut
EMBOSS-6.5.7/emboss/data/CODONS/Etobcp.cut
EMBOSS-6.5.7/emboss/data/CODONS/Emse.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ebovsp.cut
EMBOSS-6.5.7/emboss/data/CODONS/Erat.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eneu.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ehin.cut
EMBOSS-6.5.7/emboss/data/CODONS/Epethy.cut
EMBOSS-6.5.7/emboss/data/CODONS/Epae.cut
EMBOSS-6.5.7/emboss/data/CODONS/Erhosh.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ecre.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ersp.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ef1.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eeco.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ehum.cut
EMBOSS-6.5.7/emboss/data/CODONS/Emaize_chl.cut
EMBOSS-6.5.7/emboss/data/CODONS/Exel.cut
EMBOSS-6.5.7/emboss/data/CODONS/Esalsp.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eani.cut
EMBOSS-6.5.7/emboss/data/CODONS/Emanse.cut
EMBOSS-6.5.7/emboss/data/CODONS/Emtu.cut
EMBOSS-6.5.7/emboss/data/CODONS/Esv40.cut
EMBOSS-6.5.7/emboss/data/CODONS/Esoybn.cut
EMBOSS-6.5.7/emboss/data/CODONS/Engo.cut
EMBOSS-6.5.7/emboss/data/CODONS/Esalty.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eoncmy.cut
EMBOSS-6.5.7/emboss/data/CODONS/Epolyomaa2.cut
EMBOSS-6.5.7/emboss/data/CODONS/Echi.cut
EMBOSS-6.5.7/emboss/data/CODONS/Erabsp.cut
EMBOSS-6.5.7/emboss/data/CODONS/Epseae.cut
EMBOSS-6.5.7/emboss/data/CODONS/Echzmrubp.cut
EMBOSS-6.5.7/emboss/data/CODONS/Edog.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ehaein.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ecpx.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ehma.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eccr.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ephv.cut
EMBOSS-6.5.7/emboss/data/CODONS/Esmu.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eneucr.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ebly.cut
EMBOSS-6.5.7/emboss/data/CODONS/Echicken.cut
EMBOSS-6.5.7/emboss/data/CODONS/Erab.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ebraja.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ecanfa.cut
EMBOSS-6.5.7/emboss/data/CODONS/Emac.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eysc.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eserma.cut
EMBOSS-6.5.7/emboss/data/CODONS/Emammal_high.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ebsu.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ephix174.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eshpsp.cut
EMBOSS-6.5.7/emboss/data/CODONS/Erle.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eneigo.cut
EMBOSS-6.5.7/emboss/data/CODONS/Erabbit.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ehuman.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ehalsa.cut
EMBOSS-6.5.7/emboss/data/CODONS/Espi.cut
EMBOSS-6.5.7/emboss/data/CODONS/Esoltu.cut
EMBOSS-6.5.7/emboss/data/CODONS/Erhime.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ewht.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eanidmit.cut
EMBOSS-6.5.7/emboss/data/CODONS/Esli.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eddi.cut
EMBOSS-6.5.7/emboss/data/CODONS/Estrpu.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ehha.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ebmo.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ebacsu.cut
EMBOSS-6.5.7/emboss/data/CODONS/Emam_h.cut
EMBOSS-6.5.7/emboss/data/CODONS/Emzecp.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eyeast.cut
EMBOSS-6.5.7/emboss/data/CODONS/Elacdl.cut
EMBOSS-6.5.7/emboss/data/CODONS/Ebovin.cut
EMBOSS-6.5.7/emboss/data/CODONS/Edicdi_high.cut
EMBOSS-6.5.7/emboss/data/CODONS/Estrco.cut
EMBOSS-6.5.7/emboss/data/CODONS/Esmi.cut
EMBOSS-6.5.7/emboss/data/CODONS/Espo.cut
EMBOSS-6.5.7/emboss/data/CODONS/Eklula.cut
EMBOSS-6.5.7/emboss/data/EGC.10
EMBOSS-6.5.7/emboss/data/EPAM110
EMBOSS-6.5.7/emboss/data/DRCAT.dat
EMBOSS-6.5.7/emboss/data/JASPAR_PHYLOFACTS/
EMBOSS-6.5.7/emboss/data/JASPAR_PHYLOFACTS/dummyfile
EMBOSS-6.5.7/emboss/data/JASPAR_PHYLOFACTS/Makefile.in
EMBOSS-6.5.7/emboss/data/JASPAR_PHYLOFACTS/Makefile.am
EMBOSS-6.5.7/emboss/data/EPAM380
EMBOSS-6.5.7/emboss/data/EPAM240
EMBOSS-6.5.7/emboss/data/EPAM140
EMBOSS-6.5.7/emboss/data/EGC.6
EMBOSS-6.5.7/emboss/data/EPAM150
EMBOSS-6.5.7/emboss/data/tp400_trans
EMBOSS-6.5.7/emboss/data/EPAM470
EMBOSS-6.5.7/emboss/data/Eangles_tri.dat
EMBOSS-6.5.7/emboss/data/Eangles.dat
EMBOSS-6.5.7/emboss/data/Makefile.in
EMBOSS-6.5.7/emboss/data/Efeatures.gff3protein
EMBOSS-6.5.7/emboss/data/EPAM80
EMBOSS-6.5.7/emboss/data/Etags.embl
EMBOSS-6.5.7/emboss/data/EBLOSUM55
EMBOSS-6.5.7/emboss/data/Eprior30.plib
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EMBOSS-6.5.7/jemboss/api/overview-frame.html
EMBOSS-6.5.7/jemboss/api/deprecated-list.html
EMBOSS-6.5.7/jemboss/api/packages.html
EMBOSS-6.5.7/jemboss/api/allclasses-frame.html
EMBOSS-6.5.7/jemboss/api/package-list
EMBOSS-6.5.7/jemboss/api/overview-summary.html
EMBOSS-6.5.7/jemboss/utils/
EMBOSS-6.5.7/jemboss/utils/template.html
EMBOSS-6.5.7/jemboss/utils/makeJar.csh
EMBOSS-6.5.7/jemboss/utils/makeFileManagerJNLP.sh
EMBOSS-6.5.7/jemboss/utils/makeJNLP.sh
EMBOSS-6.5.7/jemboss/utils/Makefile.in
EMBOSS-6.5.7/jemboss/utils/jws-launch-button.png
EMBOSS-6.5.7/jemboss/utils/Makefile.am
EMBOSS-6.5.7/jemboss/utils/install-jemboss-server.sh
EMBOSS-6.5.7/jemboss/utils/keys.sh
EMBOSS-6.5.7/jemboss/utils/makeSourceJar.csh
EMBOSS-6.5.7/jemboss/utils/README
EMBOSS-6.5.7/jemboss/Makefile.in
EMBOSS-6.5.7/jemboss/Makefile.am
EMBOSS-6.5.7/jemboss/lib/
EMBOSS-6.5.7/jemboss/lib/JembossPrintAlignment.jar
EMBOSS-6.5.7/jemboss/lib/Makefile.in
EMBOSS-6.5.7/jemboss/lib/mail.jar
EMBOSS-6.5.7/jemboss/lib/LICENSE.Apache
EMBOSS-6.5.7/jemboss/lib/Makefile.am
EMBOSS-6.5.7/jemboss/lib/jemboss.jar
EMBOSS-6.5.7/jemboss/lib/xerces.jar
EMBOSS-6.5.7/jemboss/lib/axis/
EMBOSS-6.5.7/jemboss/lib/axis/servlet.jar
EMBOSS-6.5.7/jemboss/lib/axis/commons-logging.jar
EMBOSS-6.5.7/jemboss/lib/axis/axis-ant.jar
EMBOSS-6.5.7/jemboss/lib/axis/Makefile.in
EMBOSS-6.5.7/jemboss/lib/axis/Makefile.am
EMBOSS-6.5.7/jemboss/lib/axis/log4j-1.2.8.jar
EMBOSS-6.5.7/jemboss/lib/axis/commons-discovery.jar
EMBOSS-6.5.7/jemboss/lib/axis/saaj.jar
EMBOSS-6.5.7/jemboss/lib/axis/axis.jar
EMBOSS-6.5.7/jemboss/lib/axis/wsdl4j.jar
EMBOSS-6.5.7/jemboss/lib/axis/jaxrpc.jar
EMBOSS-6.5.7/jemboss/lib/jalviewApplet.jar
EMBOSS-6.5.7/jemboss/lib/jakarta-regexp-1.2.jar
EMBOSS-6.5.7/jemboss/lib/README
EMBOSS-6.5.7/jemboss/lib/activation.jar
EMBOSS-6.5.7/jemboss/LICENSE
EMBOSS-6.5.7/jemboss/runJemboss.sh
EMBOSS-6.5.7/jemboss/contrib/
EMBOSS-6.5.7/jemboss/contrib/jaligner/
EMBOSS-6.5.7/jemboss/contrib/jaligner/docs/
EMBOSS-6.5.7/jemboss/contrib/jaligner/docs/readme.html
EMBOSS-6.5.7/jemboss/contrib/jaligner/LICENSE
EMBOSS-6.5.7/jemboss/contrib/jaligner/src/
EMBOSS-6.5.7/jemboss/contrib/jaligner/src/jaligner_src.jar
EMBOSS-6.5.7/jemboss/contrib/jaligner/examples/
EMBOSS-6.5.7/jemboss/contrib/jaligner/examples/hbb-human.fasta
EMBOSS-6.5.7/jemboss/contrib/jaligner/examples/hbb.bat
EMBOSS-6.5.7/jemboss/contrib/jaligner/examples/hbb-horse.fasta
EMBOSS-6.5.7/jemboss/contrib/jaligner/examples/hbb.sh
EMBOSS-6.5.7/jemboss/contrib/jaligner/README
EMBOSS-6.5.7/jemboss/contrib/jaligner/jaligner.jar
EMBOSS-6.5.7/jemboss/runJemboss.sh.in
EMBOSS-6.5.7/jemboss/images/
EMBOSS-6.5.7/jemboss/images/Makefile.in
EMBOSS-6.5.7/jemboss/images/Refresh_button2.gif
EMBOSS-6.5.7/jemboss/images/jay64.jpg
EMBOSS-6.5.7/jemboss/images/Makefile.am
EMBOSS-6.5.7/jemboss/images/Go_button.gif
EMBOSS-6.5.7/jemboss/images/jemboss.ico
EMBOSS-6.5.7/jemboss/images/Refresh_button.gif
EMBOSS-6.5.7/jemboss/images/Backward_arrow_button.gif
EMBOSS-6.5.7/jemboss/images/Forward_arrow_button.gif
EMBOSS-6.5.7/jemboss/images/Jemboss_logo_greyback.gif
EMBOSS-6.5.7/jemboss/images/Jemboss_logo_large.gif
EMBOSS-6.5.7/jemboss/images/Information_button.gif
EMBOSS-6.5.7/jemboss/images/Job_manager_button.gif
EMBOSS-6.5.7/jemboss/images/Jemboss_logo_small.gif
EMBOSS-6.5.7/jemboss/README
EMBOSS-6.5.7/jemboss/readme.html
EMBOSS-6.5.7/configure.in
EMBOSS-6.5.7/configure
EMBOSS-6.5.7/KNOWN_BUGS
EMBOSS-6.5.7/README
EMBOSS-6.5.7/aclocal.m4
EMBOSS-6.5.7/m4/
EMBOSS-6.5.7/m4/libtool.m4
EMBOSS-6.5.7/m4/lf_x11.m4
EMBOSS-6.5.7/m4/general.m4
EMBOSS-6.5.7/m4/sgi.m4
EMBOSS-6.5.7/m4/pkg.m4
EMBOSS-6.5.7/m4/postgresql.m4
EMBOSS-6.5.7/m4/idxdbs.m4
EMBOSS-6.5.7/m4/lt~obsolete.m4
EMBOSS-6.5.7/m4/ltsugar.m4
EMBOSS-6.5.7/m4/java.m4
EMBOSS-6.5.7/m4/mysql.m4
EMBOSS-6.5.7/m4/ltversion.m4
EMBOSS-6.5.7/m4/pngdriver.m4
EMBOSS-6.5.7/m4/ltoptions.m4
EMBOSS-6.5.7/m4/axis2c.m4
EMBOSS-6.5.7/m4/hpdf.m4
EMBOSS-6.5.7/ajax/
EMBOSS-6.5.7/ajax/pcre/
EMBOSS-6.5.7/ajax/pcre/pcre_fullinfo.c
EMBOSS-6.5.7/ajax/pcre/pcre_internal.h
EMBOSS-6.5.7/ajax/pcre/pcre_info.c
EMBOSS-6.5.7/ajax/pcre/pcreposix.c
EMBOSS-6.5.7/ajax/pcre/pcre_get.c
EMBOSS-6.5.7/ajax/pcre/pcre_tables.c
EMBOSS-6.5.7/ajax/pcre/pcre_version.c
EMBOSS-6.5.7/ajax/pcre/pcre_compile.c
EMBOSS-6.5.7/ajax/pcre/pcre_try_flipped.c
EMBOSS-6.5.7/ajax/pcre/Makefile.in
EMBOSS-6.5.7/ajax/pcre/pcre_exec.c
EMBOSS-6.5.7/ajax/pcre/pcre_study.c
EMBOSS-6.5.7/ajax/pcre/Makefile.am
EMBOSS-6.5.7/ajax/pcre/COPYING
EMBOSS-6.5.7/ajax/pcre/pcre_globals.c
EMBOSS-6.5.7/ajax/pcre/pcre_chartables.c
EMBOSS-6.5.7/ajax/pcre/ucp.h
EMBOSS-6.5.7/ajax/pcre/pcre_xclass.c
EMBOSS-6.5.7/ajax/pcre/pcre_dfa_exec.c
EMBOSS-6.5.7/ajax/pcre/pcreemboss.h
EMBOSS-6.5.7/ajax/pcre/pcre_config.h
EMBOSS-6.5.7/ajax/pcre/pcre_newline.c
EMBOSS-6.5.7/ajax/pcre/pcre_printint.src
EMBOSS-6.5.7/ajax/pcre/pcre.h
EMBOSS-6.5.7/ajax/pcre/pcreposix.h
EMBOSS-6.5.7/ajax/ensembl/
EMBOSS-6.5.7/ajax/ensembl/ensseqregion.h
EMBOSS-6.5.7/ajax/ensembl/ensgvallele.h
EMBOSS-6.5.7/ajax/ensembl/enscoordsystem.h
EMBOSS-6.5.7/ajax/ensembl/ensembl.h
EMBOSS-6.5.7/ajax/ensembl/ensslice.c
EMBOSS-6.5.7/ajax/ensembl/enssequenceedit.c
EMBOSS-6.5.7/ajax/ensembl/ensdensity.h
EMBOSS-6.5.7/ajax/ensembl/ensgvvariation.c
EMBOSS-6.5.7/ajax/ensembl/ensvariation.c
EMBOSS-6.5.7/ajax/ensembl/ensstorable.h
EMBOSS-6.5.7/ajax/ensembl/ensgvgenotype.h
EMBOSS-6.5.7/ajax/ensembl/ensseqregion.c
EMBOSS-6.5.7/ajax/ensembl/enssimple.c
EMBOSS-6.5.7/ajax/ensembl/ensqcdasfeature.c
EMBOSS-6.5.7/ajax/ensembl/ensexon.c
EMBOSS-6.5.7/ajax/ensembl/enssequenceedit.h
EMBOSS-6.5.7/ajax/ensembl/ensgene.h
EMBOSS-6.5.7/ajax/ensembl/ensqcdasfeature.h
EMBOSS-6.5.7/ajax/ensembl/ensmiscellaneous.h
EMBOSS-6.5.7/ajax/ensembl/enstranscript.h
EMBOSS-6.5.7/ajax/ensembl/ensprediction.h
EMBOSS-6.5.7/ajax/ensembl/ensgvdatabaseadaptor.c
EMBOSS-6.5.7/ajax/ensembl/ensattribute.h
EMBOSS-6.5.7/ajax/ensembl/ensstorable.c
EMBOSS-6.5.7/ajax/ensembl/ensattribute.c
EMBOSS-6.5.7/ajax/ensembl/ensprotein.c
EMBOSS-6.5.7/ajax/ensembl/ensalign.c
EMBOSS-6.5.7/ajax/ensembl/enstranslation.h
EMBOSS-6.5.7/ajax/ensembl/ensexternaldatabase.c
EMBOSS-6.5.7/ajax/ensembl/ensditag.h
EMBOSS-6.5.7/ajax/ensembl/Makefile.in
EMBOSS-6.5.7/ajax/ensembl/enscoordsystem.c
EMBOSS-6.5.7/ajax/ensembl/ensassemblymapper.c
EMBOSS-6.5.7/ajax/ensembl/ensprotein.h
EMBOSS-6.5.7/ajax/ensembl/ensmetacoordinate.h
EMBOSS-6.5.7/ajax/ensembl/ensintron.c
EMBOSS-6.5.7/ajax/ensembl/ensmetacoordinate.c
EMBOSS-6.5.7/ajax/ensembl/ensgvattribute.h
EMBOSS-6.5.7/ajax/ensembl/ensdatabaseadaptor.c
EMBOSS-6.5.7/ajax/ensembl/ensqcalignment.h
EMBOSS-6.5.7/ajax/ensembl/Makefile.am
EMBOSS-6.5.7/ajax/ensembl/ensmetainformation.h
EMBOSS-6.5.7/ajax/ensembl/ensmapper.c
EMBOSS-6.5.7/ajax/ensembl/enssequence.h
EMBOSS-6.5.7/ajax/ensembl/ensgvvariation.h
EMBOSS-6.5.7/ajax/ensembl/ensgvsource.h
EMBOSS-6.5.7/ajax/ensembl/ensrepeat.c
EMBOSS-6.5.7/ajax/ensembl/ensprojectionsegment.h
EMBOSS-6.5.7/ajax/ensembl/ensgvbaseadaptor.c
EMBOSS-6.5.7/ajax/ensembl/ensqcvariation.c
EMBOSS-6.5.7/ajax/ensembl/enssequence.c
EMBOSS-6.5.7/ajax/ensembl/ensgvdatabaseadaptor.h
EMBOSS-6.5.7/ajax/ensembl/ensrepeat.h
EMBOSS-6.5.7/ajax/ensembl/ensgvsynonym.c
EMBOSS-6.5.7/ajax/ensembl/enscache.c
EMBOSS-6.5.7/ajax/ensembl/ensdata.h
EMBOSS-6.5.7/ajax/ensembl/ensutility.c
EMBOSS-6.5.7/ajax/ensembl/ensqcsubmission.h
EMBOSS-6.5.7/ajax/ensembl/ensdatabaseconnection.h
EMBOSS-6.5.7/ajax/ensembl/ensanalysis.c
EMBOSS-6.5.7/ajax/ensembl/enssoftware.c
EMBOSS-6.5.7/ajax/ensembl/ensdatabaseentry.h
EMBOSS-6.5.7/ajax/ensembl/enstable.c
EMBOSS-6.5.7/ajax/ensembl/ensexon.h
EMBOSS-6.5.7/ajax/ensembl/ensalign.h
EMBOSS-6.5.7/ajax/ensembl/ensbaseadaptor.c
EMBOSS-6.5.7/ajax/ensembl/enskaryotype.h
EMBOSS-6.5.7/ajax/ensembl/ensintron.h
EMBOSS-6.5.7/ajax/ensembl/enstranscript.c
EMBOSS-6.5.7/ajax/ensembl/ensgvsample.h
EMBOSS-6.5.7/ajax/ensembl/enskaryotype.c
EMBOSS-6.5.7/ajax/ensembl/ensmarker.c
EMBOSS-6.5.7/ajax/ensembl/ensqcdatabase.h
EMBOSS-6.5.7/ajax/ensembl/ensdatabaseentry.c
EMBOSS-6.5.7/ajax/ensembl/enscache.h
EMBOSS-6.5.7/ajax/ensembl/ensfeature.c
EMBOSS-6.5.7/ajax/ensembl/ensgvindividual.c
EMBOSS-6.5.7/ajax/ensembl/enstranslation.c
EMBOSS-6.5.7/ajax/ensembl/ensgvpopulation.c
EMBOSS-6.5.7/ajax/ensembl/enssimple.h
EMBOSS-6.5.7/ajax/ensembl/enssoftware.h
EMBOSS-6.5.7/ajax/ensembl/ensdatabaseconnection.c
EMBOSS-6.5.7/ajax/ensembl/ensgvgenotype.c
EMBOSS-6.5.7/ajax/ensembl/ensmarker.h
EMBOSS-6.5.7/ajax/ensembl/ensgene.c
EMBOSS-6.5.7/ajax/ensembl/ensgvsource.c
EMBOSS-6.5.7/ajax/ensembl/ensgvsample.c
EMBOSS-6.5.7/ajax/ensembl/ensditag.c
EMBOSS-6.5.7/ajax/ensembl/ensassembly.c
EMBOSS-6.5.7/ajax/ensembl/ensqcvariation.h
EMBOSS-6.5.7/ajax/ensembl/ensontology.h
EMBOSS-6.5.7/ajax/ensembl/ensgvdata.h
EMBOSS-6.5.7/ajax/ensembl/ensmiscellaneous.c
EMBOSS-6.5.7/ajax/ensembl/ensregistry.h
EMBOSS-6.5.7/ajax/ensembl/ensmetainformation.c
EMBOSS-6.5.7/ajax/ensembl/ensutility.h
EMBOSS-6.5.7/ajax/ensembl/ensassemblyexception.c
EMBOSS-6.5.7/ajax/ensembl/ensassemblyexception.h
EMBOSS-6.5.7/ajax/ensembl/ensqc.h
EMBOSS-6.5.7/ajax/ensembl/ensassembly.h
EMBOSS-6.5.7/ajax/ensembl/ensdatabaseadaptor.h
EMBOSS-6.5.7/ajax/ensembl/ensgvbaseadaptor.h
EMBOSS-6.5.7/ajax/ensembl/ensprediction.c
EMBOSS-6.5.7/ajax/ensembl/ensqcsequence.h
EMBOSS-6.5.7/ajax/ensembl/ensbaseadaptor.h
EMBOSS-6.5.7/ajax/ensembl/ensfeature.h
EMBOSS-6.5.7/ajax/ensembl/ensanalysis.h
EMBOSS-6.5.7/ajax/ensembl/ensgvpopulation.h
EMBOSS-6.5.7/ajax/ensembl/ensgvattribute.c
EMBOSS-6.5.7/ajax/ensembl/ensmapper.h
EMBOSS-6.5.7/ajax/ensembl/ensontology.c
EMBOSS-6.5.7/ajax/ensembl/ensregistry.c
EMBOSS-6.5.7/ajax/ensembl/ensgvsynonym.h
EMBOSS-6.5.7/ajax/ensembl/ensgvallele.c
EMBOSS-6.5.7/ajax/ensembl/ensgvindividual.h
EMBOSS-6.5.7/ajax/ensembl/ensexternaldatabase.h
EMBOSS-6.5.7/ajax/ensembl/ensprojectionsegment.c
EMBOSS-6.5.7/ajax/ensembl/ensvariation.h
EMBOSS-6.5.7/ajax/ensembl/ensqcsequence.c
EMBOSS-6.5.7/ajax/ensembl/ensassemblymapper.h
EMBOSS-6.5.7/ajax/ensembl/ensqc.c
EMBOSS-6.5.7/ajax/ensembl/ensqcdatabase.c
EMBOSS-6.5.7/ajax/ensembl/ensqcsubmission.c
EMBOSS-6.5.7/ajax/ensembl/enstable.h
EMBOSS-6.5.7/ajax/ensembl/ensqcalignment.c
EMBOSS-6.5.7/ajax/ensembl/ensslice.h
EMBOSS-6.5.7/ajax/ensembl/ensdensity.c
EMBOSS-6.5.7/ajax/expat/
EMBOSS-6.5.7/ajax/expat/ascii.h
EMBOSS-6.5.7/ajax/expat/xmlrole.c
EMBOSS-6.5.7/ajax/expat/expat_config.h
EMBOSS-6.5.7/ajax/expat/xmltok.h
EMBOSS-6.5.7/ajax/expat/xmltok_ns.c
EMBOSS-6.5.7/ajax/expat/Makefile.in
EMBOSS-6.5.7/ajax/expat/expatemboss.h
EMBOSS-6.5.7/ajax/expat/xmltok_impl.h
EMBOSS-6.5.7/ajax/expat/xmlrole.h
EMBOSS-6.5.7/ajax/expat/Makefile.am
EMBOSS-6.5.7/ajax/expat/asciitab.h
EMBOSS-6.5.7/ajax/expat/iasciitab.h
EMBOSS-6.5.7/ajax/expat/xmltok_impl.c
EMBOSS-6.5.7/ajax/expat/nametab.h
EMBOSS-6.5.7/ajax/expat/expat.h
EMBOSS-6.5.7/ajax/expat/COPYING
EMBOSS-6.5.7/ajax/expat/xmltok.c
EMBOSS-6.5.7/ajax/expat/latin1tab.h
EMBOSS-6.5.7/ajax/expat/utf8tab.h
EMBOSS-6.5.7/ajax/expat/xmlparse.c
EMBOSS-6.5.7/ajax/expat/expat_external.h
EMBOSS-6.5.7/ajax/expat/internal.h
EMBOSS-6.5.7/ajax/Makefile.in
EMBOSS-6.5.7/ajax/Makefile.am
EMBOSS-6.5.7/ajax/ajaxdb/
EMBOSS-6.5.7/ajax/ajaxdb/ajmart.h
EMBOSS-6.5.7/ajax/ajaxdb/ajsoap.c
EMBOSS-6.5.7/ajax/ajaxdb/ajtaxdb.c
EMBOSS-6.5.7/ajax/ajaxdb/ajtextdb.h
EMBOSS-6.5.7/ajax/ajaxdb/ajurldb.h
EMBOSS-6.5.7/ajax/ajaxdb/ajobodb.h
EMBOSS-6.5.7/ajax/ajaxdb/Makefile.in
EMBOSS-6.5.7/ajax/ajaxdb/ajseqdb.c
EMBOSS-6.5.7/ajax/ajaxdb/ajseqdb.h
EMBOSS-6.5.7/ajax/ajaxdb/Makefile.am
EMBOSS-6.5.7/ajax/ajaxdb/ajdas.c
EMBOSS-6.5.7/ajax/ajaxdb/ajfeatdb.h
EMBOSS-6.5.7/ajax/ajaxdb/ajrefseqdb.h
EMBOSS-6.5.7/ajax/ajaxdb/COPYING
EMBOSS-6.5.7/ajax/ajaxdb/ajtaxdb.h
EMBOSS-6.5.7/ajax/ajaxdb/ajvardb.h
EMBOSS-6.5.7/ajax/ajaxdb/ajrefseqdb.c
EMBOSS-6.5.7/ajax/ajaxdb/ajvardb.c
EMBOSS-6.5.7/ajax/ajaxdb/ajfeatdb.c
EMBOSS-6.5.7/ajax/ajaxdb/ajassemdb.c
EMBOSS-6.5.7/ajax/ajaxdb/ajmart.c
EMBOSS-6.5.7/ajax/ajaxdb/ajresourcedb.c
EMBOSS-6.5.7/ajax/ajaxdb/ajtextdb.c
EMBOSS-6.5.7/ajax/ajaxdb/ajdas.h
EMBOSS-6.5.7/ajax/ajaxdb/ajassemdb.h
EMBOSS-6.5.7/ajax/ajaxdb/ajsoap.h
EMBOSS-6.5.7/ajax/ajaxdb/ajurldb.c
EMBOSS-6.5.7/ajax/ajaxdb/ajresourcedb.h
EMBOSS-6.5.7/ajax/ajaxdb/ajobodb.c
EMBOSS-6.5.7/ajax/graphics/
EMBOSS-6.5.7/ajax/graphics/ajgraphstruct.h
EMBOSS-6.5.7/ajax/graphics/Makefile.in
EMBOSS-6.5.7/ajax/graphics/Makefile.am
EMBOSS-6.5.7/ajax/graphics/ajgraph.h
EMBOSS-6.5.7/ajax/graphics/COPYING
EMBOSS-6.5.7/ajax/graphics/ajhist.h
EMBOSS-6.5.7/ajax/graphics/ajgraph.c
EMBOSS-6.5.7/ajax/graphics/ajhist.c
EMBOSS-6.5.7/ajax/COPYING
EMBOSS-6.5.7/ajax/core/
EMBOSS-6.5.7/ajax/core/ajbamindex.h
EMBOSS-6.5.7/ajax/core/ajdmx.c
EMBOSS-6.5.7/ajax/core/ajnam.c
EMBOSS-6.5.7/ajax/core/ajmatrices.h
EMBOSS-6.5.7/ajax/core/ajtextdata.h
EMBOSS-6.5.7/ajax/core/ajobowrite.c
EMBOSS-6.5.7/ajax/core/ajseqtype.h
EMBOSS-6.5.7/ajax/core/ajlist.c
EMBOSS-6.5.7/ajax/core/ajnexus.h
EMBOSS-6.5.7/ajax/core/ajoboread.h
EMBOSS-6.5.7/ajax/core/ajtable.c
EMBOSS-6.5.7/ajax/core/ajdomain.h
EMBOSS-6.5.7/ajax/core/ajpdb.c
EMBOSS-6.5.7/ajax/core/ajassemread.h
EMBOSS-6.5.7/ajax/core/ajdmx.h
EMBOSS-6.5.7/ajax/core/ajdom.c
EMBOSS-6.5.7/ajax/core/ajseqbam.h
EMBOSS-6.5.7/ajax/core/ajarr.c
EMBOSS-6.5.7/ajax/core/ajtree.c
EMBOSS-6.5.7/ajax/core/ajbamindex.c
EMBOSS-6.5.7/ajax/core/ajjava.c
EMBOSS-6.5.7/ajax/core/ajtextread.c
EMBOSS-6.5.7/ajax/core/ajvar.c
EMBOSS-6.5.7/ajax/core/ajfile.c
EMBOSS-6.5.7/ajax/core/ajbase.h
EMBOSS-6.5.7/ajax/core/ajurl.c
EMBOSS-6.5.7/ajax/core/ajrefseqdata.h
EMBOSS-6.5.7/ajax/core/ajtagval.h
EMBOSS-6.5.7/ajax/core/ajfileio.h
EMBOSS-6.5.7/ajax/core/ajdomain.c
EMBOSS-6.5.7/ajax/core/ajfeatread.h
EMBOSS-6.5.7/ajax/core/ajreg.h
EMBOSS-6.5.7/ajax/core/ajlib.h
EMBOSS-6.5.7/ajax/core/ajfeat.c
EMBOSS-6.5.7/ajax/core/ajseq.c
EMBOSS-6.5.7/ajax/core/ajassert.h
EMBOSS-6.5.7/ajax/core/ajpdb.h
EMBOSS-6.5.7/ajax/core/ajtagval.c
EMBOSS-6.5.7/ajax/core/ajcall.c
EMBOSS-6.5.7/ajax/core/ajassemwrite.h
EMBOSS-6.5.7/ajax/core/ajcigar.c
EMBOSS-6.5.7/ajax/core/Makefile.in
EMBOSS-6.5.7/ajax/core/ajmess.c
EMBOSS-6.5.7/ajax/core/ajquery.c
EMBOSS-6.5.7/ajax/core/ajfileio.c
EMBOSS-6.5.7/ajax/core/ajresourcewrite.h
EMBOSS-6.5.7/ajax/core/ajseqread.c
EMBOSS-6.5.7/ajax/core/ajpat.c
EMBOSS-6.5.7/ajax/core/ajvarwrite.h
EMBOSS-6.5.7/ajax/core/ajvarread.h
EMBOSS-6.5.7/ajax/core/ajrange.h
EMBOSS-6.5.7/ajax/core/ajfile.h
EMBOSS-6.5.7/ajax/core/ajassemdata.h
EMBOSS-6.5.7/ajax/core/ajsys.h
EMBOSS-6.5.7/ajax/core/Makefile.am
EMBOSS-6.5.7/ajax/core/ajsort.c
EMBOSS-6.5.7/ajax/core/ajresourcedata.h
EMBOSS-6.5.7/ajax/core/ajindex.c
EMBOSS-6.5.7/ajax/core/ajtax.h
EMBOSS-6.5.7/ajax/core/ajrefseqread.c
EMBOSS-6.5.7/ajax/core/ajtextwrite.h
EMBOSS-6.5.7/ajax/core/ajseqread.h
EMBOSS-6.5.7/ajax/core/ajmem.c
EMBOSS-6.5.7/ajax/core/ajutil.h
EMBOSS-6.5.7/ajax/core/ajreport.h
EMBOSS-6.5.7/ajax/core/ajurlread.h
EMBOSS-6.5.7/ajax/core/ajseqwrite.h
EMBOSS-6.5.7/ajax/core/ajassemread.c
EMBOSS-6.5.7/ajax/core/ajpdbio.c
EMBOSS-6.5.7/ajax/core/ajvector.h
EMBOSS-6.5.7/ajax/core/ajfmt.c
EMBOSS-6.5.7/ajax/core/ajtext.h
EMBOSS-6.5.7/ajax/core/ajindex.h
EMBOSS-6.5.7/ajax/core/ajassert.c
EMBOSS-6.5.7/ajax/core/ajtextwrite.c
EMBOSS-6.5.7/ajax/core/ajrefseqwrite.c
EMBOSS-6.5.7/ajax/core/ajrange.c
EMBOSS-6.5.7/ajax/core/ajurlread.c
EMBOSS-6.5.7/ajax/core/ajrefseq.c
EMBOSS-6.5.7/ajax/core/ajmath.h
EMBOSS-6.5.7/ajax/core/ajstr.h
EMBOSS-6.5.7/ajax/core/ajnam.h
EMBOSS-6.5.7/ajax/core/ajassemwrite.c
EMBOSS-6.5.7/ajax/core/ajtaxread.c
EMBOSS-6.5.7/ajax/core/ajquerydata.h
EMBOSS-6.5.7/ajax/core/ajtime.h
EMBOSS-6.5.7/ajax/core/ajphylo.c
EMBOSS-6.5.7/ajax/core/ajjava.h
EMBOSS-6.5.7/ajax/core/ajtable.h
EMBOSS-6.5.7/ajax/core/ajdan.h
EMBOSS-6.5.7/ajax/core/ajmem.h
EMBOSS-6.5.7/ajax/core/ajexcept.h
EMBOSS-6.5.7/ajax/core/ajobo.c
EMBOSS-6.5.7/ajax/core/ajrefseqwrite.h
EMBOSS-6.5.7/ajax/core/ajcod.h
EMBOSS-6.5.7/ajax/core/ajcigar.h
EMBOSS-6.5.7/ajax/core/ajseq.h
EMBOSS-6.5.7/ajax/core/ajdefine.h
EMBOSS-6.5.7/ajax/core/ajresourceread.c
EMBOSS-6.5.7/ajax/core/ajfmt.h
EMBOSS-6.5.7/ajax/core/COPYING
EMBOSS-6.5.7/ajax/core/ajsys.c
EMBOSS-6.5.7/ajax/core/ajurlwrite.h
EMBOSS-6.5.7/ajax/core/ajdom.h
EMBOSS-6.5.7/ajax/core/ajtaxread.h
EMBOSS-6.5.7/ajax/core/ajtranslate.h
EMBOSS-6.5.7/ajax/core/ajurldata.h
EMBOSS-6.5.7/ajax/core/ajseqtype.c
EMBOSS-6.5.7/ajax/core/ajphylo.h
EMBOSS-6.5.7/ajax/core/ajassem.c
EMBOSS-6.5.7/ajax/core/ajresourcewrite.c
EMBOSS-6.5.7/ajax/core/ajdan.c
EMBOSS-6.5.7/ajax/core/ajtree.h
EMBOSS-6.5.7/ajax/core/ajfeatdata.h
EMBOSS-6.5.7/ajax/core/ajrefseq.h
EMBOSS-6.5.7/ajax/core/ajrefseqread.h
EMBOSS-6.5.7/ajax/core/ajseqdata.h
EMBOSS-6.5.7/ajax/core/ajtax.c
EMBOSS-6.5.7/ajax/core/ajfiledata.c
EMBOSS-6.5.7/ajax/core/ajresource.h
EMBOSS-6.5.7/ajax/core/ajalign.c
EMBOSS-6.5.7/ajax/core/ajsql.c
EMBOSS-6.5.7/ajax/core/ajnexus.c
EMBOSS-6.5.7/ajax/core/ajfeatwrite.h
EMBOSS-6.5.7/ajax/core/ajurlwrite.c
EMBOSS-6.5.7/ajax/core/ajlist.h
EMBOSS-6.5.7/ajax/core/ajutil.c
EMBOSS-6.5.7/ajax/core/ajtranslate.c
EMBOSS-6.5.7/ajax/core/ajftp.h
EMBOSS-6.5.7/ajax/core/ajseqabi.c
EMBOSS-6.5.7/ajax/core/ajassem.h
EMBOSS-6.5.7/ajax/core/ajfeatwrite.c
EMBOSS-6.5.7/ajax/core/ajurl.h
EMBOSS-6.5.7/ajax/core/ajvarbcf.c
EMBOSS-6.5.7/ajax/core/ajfeatread.c
EMBOSS-6.5.7/ajax/core/ajreport.c
EMBOSS-6.5.7/ajax/core/ajresourceread.h
EMBOSS-6.5.7/ajax/core/ajmess.h
EMBOSS-6.5.7/ajax/core/ajpdbio.h
EMBOSS-6.5.7/ajax/core/ajmatrices.c
EMBOSS-6.5.7/ajax/core/ajax.h
EMBOSS-6.5.7/ajax/core/ajseqbam.c
EMBOSS-6.5.7/ajax/core/ajsort.h
EMBOSS-6.5.7/ajax/core/ajvar.h
EMBOSS-6.5.7/ajax/core/ajvarbcf.h
EMBOSS-6.5.7/ajax/core/ajresource.c
EMBOSS-6.5.7/ajax/core/ajarr.h
EMBOSS-6.5.7/ajax/core/ajquery.h
EMBOSS-6.5.7/ajax/core/ajhttp.c
EMBOSS-6.5.7/ajax/core/ajtaxwrite.h
EMBOSS-6.5.7/ajax/core/ajobo.h
EMBOSS-6.5.7/ajax/core/ajvarread.c
EMBOSS-6.5.7/ajax/core/ajbase.c
EMBOSS-6.5.7/ajax/core/ajstr.c
EMBOSS-6.5.7/ajax/core/ajtime.c
EMBOSS-6.5.7/ajax/core/ajfiledata.h
EMBOSS-6.5.7/ajax/core/ajfeat.h
EMBOSS-6.5.7/ajax/core/ajcall.h
EMBOSS-6.5.7/ajax/core/ajmath.c
EMBOSS-6.5.7/ajax/core/ajvector.c
EMBOSS-6.5.7/ajax/core/ajtextread.h
EMBOSS-6.5.7/ajax/core/ajreg.c
EMBOSS-6.5.7/ajax/core/ajcod.c
EMBOSS-6.5.7/ajax/core/ajobodata.h
EMBOSS-6.5.7/ajax/core/ajtaxdata.h
EMBOSS-6.5.7/ajax/core/ajalign.h
EMBOSS-6.5.7/ajax/core/ajseqwrite.c
EMBOSS-6.5.7/ajax/core/ajobowrite.h
EMBOSS-6.5.7/ajax/core/config.h.in
EMBOSS-6.5.7/ajax/core/ajoboread.c
EMBOSS-6.5.7/ajax/core/ajhttp.h
EMBOSS-6.5.7/ajax/core/ajtaxwrite.c
EMBOSS-6.5.7/ajax/core/ajarch.h
EMBOSS-6.5.7/ajax/core/ajpat.h
EMBOSS-6.5.7/ajax/core/ajexcept.c
EMBOSS-6.5.7/ajax/core/ajvardata.h
EMBOSS-6.5.7/ajax/core/ajsql.h
EMBOSS-6.5.7/ajax/core/ajtext.c
EMBOSS-6.5.7/ajax/core/ajftp.c
EMBOSS-6.5.7/ajax/core/ajvarwrite.c
EMBOSS-6.5.7/ajax/core/ajseqabi.h
EMBOSS-6.5.7/ajax/zlib/
EMBOSS-6.5.7/ajax/zlib/gzlib.c
EMBOSS-6.5.7/ajax/zlib/inftrees.c
EMBOSS-6.5.7/ajax/zlib/crc32.h
EMBOSS-6.5.7/ajax/zlib/gzguts.h
EMBOSS-6.5.7/ajax/zlib/Makefile.in
EMBOSS-6.5.7/ajax/zlib/compress.c
EMBOSS-6.5.7/ajax/zlib/deflate.h
EMBOSS-6.5.7/ajax/zlib/gzclose.c
EMBOSS-6.5.7/ajax/zlib/inflate.h
EMBOSS-6.5.7/ajax/zlib/Makefile.am
EMBOSS-6.5.7/ajax/zlib/uncompr.c
EMBOSS-6.5.7/ajax/zlib/adler32.c
EMBOSS-6.5.7/ajax/zlib/zutil.c
EMBOSS-6.5.7/ajax/zlib/gzread.c
EMBOSS-6.5.7/ajax/zlib/inftrees.h
EMBOSS-6.5.7/ajax/zlib/inffast.c
EMBOSS-6.5.7/ajax/zlib/trees.c
EMBOSS-6.5.7/ajax/zlib/COPYING
EMBOSS-6.5.7/ajax/zlib/zlibemboss.h
EMBOSS-6.5.7/ajax/zlib/deflate.c
EMBOSS-6.5.7/ajax/zlib/zlib.h
EMBOSS-6.5.7/ajax/zlib/crc32.c
EMBOSS-6.5.7/ajax/zlib/zconf.h
EMBOSS-6.5.7/ajax/zlib/gzwrite.c
EMBOSS-6.5.7/ajax/zlib/infback.c
EMBOSS-6.5.7/ajax/zlib/trees.h
EMBOSS-6.5.7/ajax/zlib/inflate.c
EMBOSS-6.5.7/ajax/zlib/zutil.h
EMBOSS-6.5.7/ajax/zlib/inffixed.h
EMBOSS-6.5.7/ajax/zlib/inffast.h
EMBOSS-6.5.7/ajax/acd/
EMBOSS-6.5.7/ajax/acd/ajacd.h
EMBOSS-6.5.7/ajax/acd/Makefile.in
EMBOSS-6.5.7/ajax/acd/ajacd.c
EMBOSS-6.5.7/ajax/acd/Makefile.am
EMBOSS-6.5.7/ajax/acd/COPYING
EMBOSS-6.5.7/INSTALL
EMBOSS-6.5.7/nucleus/
EMBOSS-6.5.7/nucleus/embexit.h
EMBOSS-6.5.7/nucleus/emboss.h
EMBOSS-6.5.7/nucleus/embshow.c
EMBOSS-6.5.7/nucleus/embdomain.h
EMBOSS-6.5.7/nucleus/embcom.h
EMBOSS-6.5.7/nucleus/embpat.h
EMBOSS-6.5.7/nucleus/embdata.c
EMBOSS-6.5.7/nucleus/embprop.c
EMBOSS-6.5.7/nucleus/embshow.h
EMBOSS-6.5.7/nucleus/embnmer.h
EMBOSS-6.5.7/nucleus/embread.c
EMBOSS-6.5.7/nucleus/embdmx.c
EMBOSS-6.5.7/nucleus/embinit.c
EMBOSS-6.5.7/nucleus/Makefile.in
EMBOSS-6.5.7/nucleus/embest.c
EMBOSS-6.5.7/nucleus/embdbi.h
EMBOSS-6.5.7/nucleus/embdbi.c
EMBOSS-6.5.7/nucleus/embaln.h
EMBOSS-6.5.7/nucleus/embpatlist.c
EMBOSS-6.5.7/nucleus/embgroup.h
EMBOSS-6.5.7/nucleus/embexit.c
EMBOSS-6.5.7/nucleus/Makefile.am
EMBOSS-6.5.7/nucleus/embcons.h
EMBOSS-6.5.7/nucleus/embmisc.h
EMBOSS-6.5.7/nucleus/embread.h
EMBOSS-6.5.7/nucleus/embword.c
EMBOSS-6.5.7/nucleus/embaln.c
EMBOSS-6.5.7/nucleus/embmat.c
EMBOSS-6.5.7/nucleus/embmol.h
EMBOSS-6.5.7/nucleus/embpdb.h
EMBOSS-6.5.7/nucleus/embgroup.c
EMBOSS-6.5.7/nucleus/embpatlist.h
EMBOSS-6.5.7/nucleus/embdata.h
EMBOSS-6.5.7/nucleus/embcom.c
EMBOSS-6.5.7/nucleus/COPYING
EMBOSS-6.5.7/nucleus/embdmx.h
EMBOSS-6.5.7/nucleus/embiep.h
EMBOSS-6.5.7/nucleus/embmat.h
EMBOSS-6.5.7/nucleus/embword.h
EMBOSS-6.5.7/nucleus/embprop.h
EMBOSS-6.5.7/nucleus/embinit.h
EMBOSS-6.5.7/nucleus/embiep.c
EMBOSS-6.5.7/nucleus/embindex.c
EMBOSS-6.5.7/nucleus/embest.h
EMBOSS-6.5.7/nucleus/embsig.c
EMBOSS-6.5.7/nucleus/embpdb.c
EMBOSS-6.5.7/nucleus/embsig.h
EMBOSS-6.5.7/nucleus/embdomain.c
EMBOSS-6.5.7/nucleus/embmol.c
EMBOSS-6.5.7/nucleus/embmisc.c
EMBOSS-6.5.7/nucleus/embpat.c
EMBOSS-6.5.7/nucleus/embnmer.c
EMBOSS-6.5.7/nucleus/embindex.h
EMBOSS-6.5.7/nucleus/embcons.c
EMBOSS-6.5.7/ONEWS
EMBOSS-6.5.7/install-sh
EMBOSS-6.5.7/ltmain.sh
EMBOSS-6.5.7/scripts/
EMBOSS-6.5.7/scripts/wikiall.pl
EMBOSS-6.5.7/scripts/checkc.pl
EMBOSS-6.5.7/scripts/makefilestest.pl
EMBOSS-6.5.7/scripts/makeexample.pl
EMBOSS-6.5.7/scripts/mkembassy.c
EMBOSS-6.5.7/scripts/makecheck.csh
EMBOSS-6.5.7/scripts/drcatvalid.pl
EMBOSS-6.5.7/scripts/cleannew.pl
EMBOSS-6.5.7/scripts/valgrind.pl
EMBOSS-6.5.7/scripts/makeoneembassy.csh
EMBOSS-6.5.7/scripts/createnewdocumentation.pl
EMBOSS-6.5.7/scripts/dovalid.csh
EMBOSS-6.5.7/scripts/wikifyapps.pl
EMBOSS-6.5.7/scripts/sections.pl
EMBOSS-6.5.7/scripts/acdvalidreport.pl
EMBOSS-6.5.7/scripts/oboindex.csh
EMBOSS-6.5.7/scripts/valgrindreport.pl
EMBOSS-6.5.7/scripts/acdsyntax.pl
EMBOSS-6.5.7/scripts/eiprscan-sort.pl
EMBOSS-6.5.7/scripts/logreport1.pl
EMBOSS-6.5.7/scripts/embossdoccategories.pl
EMBOSS-6.5.7/scripts/acdstats.pl
EMBOSS-6.5.7/scripts/embossdatadoc.pl
EMBOSS-6.5.7/scripts/bundlewin.c
EMBOSS-6.5.7/scripts/edithtml.pl
EMBOSS-6.5.7/scripts/makeonetest.csh
EMBOSS-6.5.7/scripts/docnucleusindex.pl
EMBOSS-6.5.7/scripts/cvsscripts/
EMBOSS-6.5.7/scripts/cvsscripts/makeembassy
EMBOSS-6.5.7/scripts/cvsscripts/makeembosspure
EMBOSS-6.5.7/scripts/cvsscripts/automakeembassy
EMBOSS-6.5.7/scripts/cvsscripts/makeemboss
EMBOSS-6.5.7/scripts/cvsscripts/makeembassy2
EMBOSS-6.5.7/scripts/cvsscripts/makeemboss3
EMBOSS-6.5.7/scripts/cvsscripts/automakeit
EMBOSS-6.5.7/scripts/cvsscripts/makeemboss2
EMBOSS-6.5.7/scripts/makehistory.pl
EMBOSS-6.5.7/scripts/autodoc.csh
EMBOSS-6.5.7/scripts/embossdatacheck.pl
EMBOSS-6.5.7/scripts/testgroups.pl
EMBOSS-6.5.7/scripts/embossdocreport.pl
EMBOSS-6.5.7/scripts/embassytestconfig.pl
EMBOSS-6.5.7/scripts/embllocations.pl
EMBOSS-6.5.7/scripts/datadocsingle.csh
EMBOSS-6.5.7/scripts/wikifytable.pl
EMBOSS-6.5.7/scripts/codestandard.pl
EMBOSS-6.5.7/scripts/edata.is
EMBOSS-6.5.7/scripts/dopretty.csh
EMBOSS-6.5.7/scripts/docindex.pl
EMBOSS-6.5.7/scripts/serverentrez.pl
EMBOSS-6.5.7/scripts/third.pl
EMBOSS-6.5.7/scripts/compembassy.c
EMBOSS-6.5.7/scripts/dovalidclean.pl
EMBOSS-6.5.7/scripts/autodoc.pl
EMBOSS-6.5.7/scripts/embossdoccatreport.pl
EMBOSS-6.5.7/scripts/purify.pl
EMBOSS-6.5.7/scripts/makeonly.csh
EMBOSS-6.5.7/scripts/acdprettyall.csh
EMBOSS-6.5.7/scripts/acdcompare.csh
EMBOSS-6.5.7/scripts/.cvsignore
EMBOSS-6.5.7/scripts/fixdeprecated.pl
EMBOSS-6.5.7/scripts/makeMake.pl
EMBOSS-6.5.7/scripts/dbxref.pl
EMBOSS-6.5.7/scripts/wikifybook.pl
EMBOSS-6.5.7/scripts/qatomemtest.pl
EMBOSS-6.5.7/scripts/docsingle.csh
EMBOSS-6.5.7/scripts/winchkexes.c
EMBOSS-6.5.7/scripts/knowntypevalid.pl
EMBOSS-6.5.7/scripts/makeone.csh
EMBOSS-6.5.7/scripts/efuncrel.pl
EMBOSS-6.5.7/scripts/unused_functions.pl
EMBOSS-6.5.7/scripts/embossdoccheck.pl
EMBOSS-6.5.7/scripts/makeChangelog.pl
EMBOSS-6.5.7/scripts/makeadmin.csh
EMBOSS-6.5.7/scripts/embossdoc.csh
EMBOSS-6.5.7/scripts/emblmini.pl
EMBOSS-6.5.7/scripts/qatest.bat
EMBOSS-6.5.7/scripts/dbilist.pl
EMBOSS-6.5.7/scripts/makesummary.pl
EMBOSS-6.5.7/scripts/taxtestdata.pl
EMBOSS-6.5.7/scripts/wikifyseealso.pl
EMBOSS-6.5.7/scripts/efunc.i
EMBOSS-6.5.7/scripts/edata.i
EMBOSS-6.5.7/scripts/README
EMBOSS-6.5.7/scripts/dbitest.pl
EMBOSS-6.5.7/scripts/newdatatype.pl
EMBOSS-6.5.7/scripts/testft.csh
EMBOSS-6.5.7/scripts/wikifyhtml.pl
EMBOSS-6.5.7/scripts/efunc.it
EMBOSS-6.5.7/scripts/embossdoc.pl
EMBOSS-6.5.7/scripts/emblsplit.pl
EMBOSS-6.5.7/scripts/efunc.is
EMBOSS-6.5.7/scripts/testcoverage.pl
EMBOSS-6.5.7/scripts/wikifyembassy.pl
EMBOSS-6.5.7/scripts/makeam.c
EMBOSS-6.5.7/scripts/soextract.pl
EMBOSS-6.5.7/scripts/mygprof.csh
EMBOSS-6.5.7/scripts/bundlewin.csh
EMBOSS-6.5.7/scripts/dbindex.csh
EMBOSS-6.5.7/scripts/currentsourceforge.csh
EMBOSS-6.5.7/scripts/eclipse-emboss-codestyle.xml
EMBOSS-6.5.7/scripts/acdsyntax.csh
EMBOSS-6.5.7/scripts/dbobda.pl
EMBOSS-6.5.7/scripts/dbfetch.pl
EMBOSS-6.5.7/scripts/fixdeprecated.csh
EMBOSS-6.5.7/scripts/edata.it
EMBOSS-6.5.7/scripts/qatest.pl
EMBOSS-6.5.7/scripts/wikifyusage.pl
EMBOSS-6.5.7/scripts/sourceforgevalid.pl
EMBOSS-6.5.7/scripts/bioflat_index_obda.pl
sudo -u fink-bld [ENV] sh -c /tmp/fink.tACwj
[ -r /sw/fink/dists/stable/main/finkinfo/sci/emboss.patch ]
sudo -u fink-bld [ENV] sh -c /tmp/fink.0fJtq
patch -p1 < /sw/fink/dists/stable/main/finkinfo/sci/emboss.patch
patching file Makefile.am
patching file ajax/Makefile.am
patching file ajax/acd/Makefile.am
patching file ajax/ajaxdb/Makefile.am
patching file ajax/core/Makefile.am
patching file ajax/core/ajax-pcre-config.h.in
patching file ajax/core/ajreg.h
patching file ajax/ensembl/Makefile.am
patching file ajax/graphics/Makefile.am
patching file ajax/graphics/ajgraph.c
patching file configure.in
patching file emboss/Makefile.am
patching file nucleus/Makefile.am
find . -name Makefile.am | xargs perl -pi -e 's/(_la_LDFLAGS.*)/\1 -no-undefined/'
sudo -u fink-bld [ENV] sh -c /tmp/fink.g09zj
/tmp/fink.LW2gj
#!/bin/sh -ev
	if [ -x /usr/libexec/java_home ]; then
		export java_home=`/usr/libexec/java_home`
	else
		export java_home=/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home
	fi
/usr/libexec/java_home
	# 10.7+ doesn't have 'include' under $java_home, but has the Headers in JavaVM.framework
	if [ -d ${java_home}/include ]; then
		export java_includes=${java_home}/include
	else
		ln -s /System/Library/Frameworks/JavaVM.framework/Headers /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include
		export java_includes=/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include
	fi
	/sw/bin/autoreconf -fi
aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in'
libtoolize: putting auxiliary files in `.'.
libtoolize: copying file `./ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'.
libtoolize: copying file `m4/libtool.m4'
libtoolize: copying file `m4/ltoptions.m4'
libtoolize: copying file `m4/ltsugar.m4'
libtoolize: copying file `m4/ltversion.m4'
libtoolize: copying file `m4/lt~obsolete.m4'
aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in'
automake: warning: autoconf input should be named 'configure.ac', not 'configure.in'
automake: warning: autoconf input should be named 'configure.ac', not 'configure.in'
	./configure --prefix=/sw  --with-java=${java_home} \
 --with-javaos=${java_includes} \
 --enable-dependency-tracking --disable-static \
 --includedir=/sw/lib/EMBOSS/include --libdir=/sw/lib/EMBOSS/lib \
 --docdir=/sw/share/EMBOSS \
 --enable-systemlibs --with-postgresql=/sw/opt/postgresql-9.2/bin/pg_config
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking for icc... no
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for icpc... no
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C preprocessor... gcc -E
checking for a BSD-compatible install... /usr/bin/install -c
checking whether ln -s works... yes
checking whether make sets $(MAKE)... yes
checking for a thread-safe mkdir -p... ./install-sh -c -d
checking whether build environment is sane... yes
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking dependency style of g++... gcc3
checking build system type... x86_64-apple-darwin13.3.0
checking host system type... x86_64-apple-darwin13.3.0
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm
checking the name lister (/usr/bin/nm) interface... BSD nm
checking the maximum length of command line arguments... 196608
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-apple-darwin13.3.0 file names to x86_64-apple-darwin13.3.0 format... func_convert_file_noop
checking how to convert x86_64-apple-darwin13.3.0 file names to toolchain format... func_convert_file_noop
checking for /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r
checking for objdump... no
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... no
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm output from gcc object... ok
checking for sysroot... no
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checking if : is a manifest tool... no
checking for dsymutil... dsymutil
checking for nmedit... nmedit
checking for lipo... lipo
checking for otool... otool
checking for otool64... no
checking for -single_module linker flag... yes
checking for -exported_symbols_list linker flag... yes
checking for -force_load linker flag... yes
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... yes
checking for gcc option to produce PIC... -fno-common -DPIC
checking if gcc PIC flag -fno-common -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin13.3.0 dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no
checking whether the g++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fno-common -DPIC
checking if g++ PIC flag -fno-common -DPIC works... yes
checking if g++ static flag -static works... no
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin13.3.0 dyld
checking how to hardcode library paths into programs... immediate
checking for X... libraries /usr/X11/lib, headers /usr/X11/include
checking whether -R must be followed by a space... neither works
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for ANSI C header files... (cached) yes
checking for unistd.h... (cached) yes
checking TargetConfig.h usability... no
checking TargetConfig.h presence... no
checking for TargetConfig.h... no
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for pid_t... yes
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking whether getpgrp requires zero arguments... yes
checking for strftime... yes
checking vfork.h usability... no
checking vfork.h presence... no
checking for vfork.h... no
checking for fork... yes
checking for vfork... yes
checking for working fork... yes
checking for working vfork... (cached) yes
checking for vprintf... yes
checking for _doprnt... no
checking for memmove... yes
checking for socket in -lc... yes
checking for main in -lm... yes
checking if docroot is given... no
checking if gcc profiling is selected... no
checking for EMBOSS pre-indexed databases... yes
checking for Java JNI... /System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home
checking for Java JNI OS... /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include
checking for authorisation type... no
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checking for ant... no
checking for jar... /usr/bin/jar
checking for java... /usr/bin/java
checking for javac... /usr/bin/javac
checking whether to look for pdf support... yes
checking for HPDF_New in -lhpdf... yes
PDF support found
checking for pkg-config... /sw/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking whether to look for axis2c support... no
checking if png driver is wanted... yes
checking for inflateEnd in -lz... yes
checking for png_destroy_read_struct in -lpng... yes
checking for gdImageCreateFromPng in -lgd... yes
PNG libraries found
checking for mysql_config... /sw/bin/mysql_config
checking for MySQL libraries... yes
checking for pg_config... /sw/opt/postgresql-9.2/bin/pg_config
checking for PostgreSQL libraries... yes
checking for large file support... yes
checking for PLPLOT... yes
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checking for cygwin... no
checking for savestats... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating ajax/Makefile
config.status: creating ajax/acd/Makefile
config.status: creating ajax/ajaxdb/Makefile
config.status: creating ajax/core/Makefile
config.status: creating ajax/core/ajax-pcre-config.h
config.status: creating ajax/ensembl/Makefile
config.status: creating ajax/expat/Makefile
config.status: creating ajax/graphics/Makefile
config.status: creating ajax/pcre/Makefile
config.status: creating ajax/zlib/Makefile
config.status: creating doc/Makefile
config.status: creating doc/manuals/Makefile
config.status: creating doc/programs/Makefile
config.status: creating doc/programs/html/Makefile
config.status: creating doc/programs/text/Makefile
config.status: creating doc/tutorials/Makefile
config.status: creating emboss/Makefile
config.status: creating emboss/acd/Makefile
config.status: creating emboss/data/AAINDEX/Makefile
config.status: creating emboss/data/CODONS/Makefile
config.status: creating emboss/data/JASPAR_CNE/Makefile
config.status: creating emboss/data/JASPAR_CORE/Makefile
config.status: creating emboss/data/JASPAR_FAM/Makefile
config.status: creating emboss/data/JASPAR_PBM/Makefile
config.status: creating emboss/data/JASPAR_PBM_HLH/Makefile
config.status: creating emboss/data/JASPAR_PBM_HOMEO/Makefile
config.status: creating emboss/data/JASPAR_PHYLOFACTS/Makefile
config.status: creating emboss/data/JASPAR_POLII/Makefile
config.status: creating emboss/data/JASPAR_SPLICE/Makefile
config.status: creating emboss/data/Makefile
config.status: creating emboss/data/OBO/Makefile
config.status: creating emboss/data/PRINTS/Makefile
config.status: creating emboss/data/PROSITE/Makefile
config.status: creating emboss/data/REBASE/Makefile
config.status: creating emboss/data/TAXONOMY/Makefile
config.status: creating emboss/index/Makefile
config.status: creating jemboss/Makefile
config.status: creating jemboss/runJemboss.sh
config.status: creating jemboss/images/Makefile
config.status: creating jemboss/lib/Makefile
config.status: creating jemboss/lib/axis/Makefile
config.status: creating jemboss/resources/Makefile
config.status: creating jemboss/utils/Makefile
config.status: creating nucleus/Makefile
config.status: creating plplot/Makefile
config.status: creating plplot/lib/Makefile
config.status: creating test/Makefile
config.status: creating test/data/Makefile
config.status: creating test/embl/Makefile
config.status: creating test/genbank/Makefile
config.status: creating test/pir/Makefile
config.status: creating test/swiss/Makefile
config.status: creating test/swnew/Makefile
config.status: creating test/testdb/Makefile
config.status: creating ajax/core/config.h
config.status: executing depfiles commands
config.status: executing libtool commands
	make
Making all in ajax
Making all in core
/Applications/Xcode.app/Contents/Developer/usr/bin/make  all-am
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajalign.lo -MD -MP -MF .deps/libajax_la-ajalign.Tpo -c -o libajax_la-ajalign.lo `test -f 'ajalign.c' || echo './'`ajalign.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajarr.lo -MD -MP -MF .deps/libajax_la-ajarr.Tpo -c -o libajax_la-ajarr.lo `test -f 'ajarr.c' || echo './'`ajarr.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajassem.lo -MD -MP -MF .deps/libajax_la-ajassem.Tpo -c -o libajax_la-ajassem.lo `test -f 'ajassem.c' || echo './'`ajassem.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajassemread.lo -MD -MP -MF .deps/libajax_la-ajassemread.Tpo -c -o libajax_la-ajassemread.lo `test -f 'ajassemread.c' || echo './'`ajassemread.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajassemwrite.lo -MD -MP -MF .deps/libajax_la-ajassemwrite.Tpo -c -o libajax_la-ajassemwrite.lo `test -f 'ajassemwrite.c' || echo './'`ajassemwrite.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajassert.lo -MD -MP -MF .deps/libajax_la-ajassert.Tpo -c -o libajax_la-ajassert.lo `test -f 'ajassert.c' || echo './'`ajassert.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajbamindex.lo -MD -MP -MF .deps/libajax_la-ajbamindex.Tpo -c -o libajax_la-ajbamindex.lo `test -f 'ajbamindex.c' || echo './'`ajbamindex.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajbase.lo -MD -MP -MF .deps/libajax_la-ajbase.Tpo -c -o libajax_la-ajbase.lo `test -f 'ajbase.c' || echo './'`ajbase.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajassem.lo -MD -MP -MF .deps/libajax_la-ajassem.Tpo -c ajassem.c  -fno-common -DPIC -o .libs/libajax_la-ajassem.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajalign.lo -MD -MP -MF .deps/libajax_la-ajalign.Tpo -c ajalign.c  -fno-common -DPIC -o .libs/libajax_la-ajalign.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajarr.lo -MD -MP -MF .deps/libajax_la-ajarr.Tpo -c ajarr.c  -fno-common -DPIC -o .libs/libajax_la-ajarr.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajbamindex.lo -MD -MP -MF .deps/libajax_la-ajbamindex.Tpo -c ajbamindex.c  -fno-common -DPIC -o .libs/libajax_la-ajbamindex.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajassemread.lo -MD -MP -MF .deps/libajax_la-ajassemread.Tpo -c ajassemread.c  -fno-common -DPIC -o .libs/libajax_la-ajassemread.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajassemwrite.lo -MD -MP -MF .deps/libajax_la-ajassemwrite.Tpo -c ajassemwrite.c  -fno-common -DPIC -o .libs/libajax_la-ajassemwrite.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajassert.lo -MD -MP -MF .deps/libajax_la-ajassert.Tpo -c ajassert.c  -fno-common -DPIC -o .libs/libajax_la-ajassert.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajbase.lo -MD -MP -MF .deps/libajax_la-ajbase.Tpo -c ajbase.c  -fno-common -DPIC -o .libs/libajax_la-ajbase.o
mv -f .deps/libajax_la-ajassert.Tpo .deps/libajax_la-ajassert.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajcall.lo -MD -MP -MF .deps/libajax_la-ajcall.Tpo -c -o libajax_la-ajcall.lo `test -f 'ajcall.c' || echo './'`ajcall.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajcall.lo -MD -MP -MF .deps/libajax_la-ajcall.Tpo -c ajcall.c  -fno-common -DPIC -o .libs/libajax_la-ajcall.o
ajassem.c:1015:35: warning: adding 'char' to a string does not append to the string [-Wstring-plus-int]
                ajErr("unrecognised cigar op: " + cigar->cigoperator[i]);
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
ajassem.c:1015:35: note: use array indexing to silence this warning
                ajErr("unrecognised cigar op: " + cigar->cigoperator[i]);
                                                ^
                      &                         [                      ]
mv -f .deps/libajax_la-ajcall.Tpo .deps/libajax_la-ajcall.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajcigar.lo -MD -MP -MF .deps/libajax_la-ajcigar.Tpo -c -o libajax_la-ajcigar.lo `test -f 'ajcigar.c' || echo './'`ajcigar.c
1 warning generated.
mv -f .deps/libajax_la-ajassem.Tpo .deps/libajax_la-ajassem.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajcod.lo -MD -MP -MF .deps/libajax_la-ajcod.Tpo -c -o libajax_la-ajcod.lo `test -f 'ajcod.c' || echo './'`ajcod.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajcigar.lo -MD -MP -MF .deps/libajax_la-ajcigar.Tpo -c ajcigar.c  -fno-common -DPIC -o .libs/libajax_la-ajcigar.o
mv -f .deps/libajax_la-ajbase.Tpo .deps/libajax_la-ajbase.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajdan.lo -MD -MP -MF .deps/libajax_la-ajdan.Tpo -c -o libajax_la-ajdan.lo `test -f 'ajdan.c' || echo './'`ajdan.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajcod.lo -MD -MP -MF .deps/libajax_la-ajcod.Tpo -c ajcod.c  -fno-common -DPIC -o .libs/libajax_la-ajcod.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajdan.lo -MD -MP -MF .deps/libajax_la-ajdan.Tpo -c ajdan.c  -fno-common -DPIC -o .libs/libajax_la-ajdan.o
mv -f .deps/libajax_la-ajcigar.Tpo .deps/libajax_la-ajcigar.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajdmx.lo -MD -MP -MF .deps/libajax_la-ajdmx.Tpo -c -o libajax_la-ajdmx.lo `test -f 'ajdmx.c' || echo './'`ajdmx.c
mv -f .deps/libajax_la-ajbamindex.Tpo .deps/libajax_la-ajbamindex.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajdom.lo -MD -MP -MF .deps/libajax_la-ajdom.Tpo -c -o libajax_la-ajdom.lo `test -f 'ajdom.c' || echo './'`ajdom.c
mv -f .deps/libajax_la-ajassemwrite.Tpo .deps/libajax_la-ajassemwrite.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajdomain.lo -MD -MP -MF .deps/libajax_la-ajdomain.Tpo -c -o libajax_la-ajdomain.lo `test -f 'ajdomain.c' || echo './'`ajdomain.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajdmx.lo -MD -MP -MF .deps/libajax_la-ajdmx.Tpo -c ajdmx.c  -fno-common -DPIC -o .libs/libajax_la-ajdmx.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajdom.lo -MD -MP -MF .deps/libajax_la-ajdom.Tpo -c ajdom.c  -fno-common -DPIC -o .libs/libajax_la-ajdom.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajdomain.lo -MD -MP -MF .deps/libajax_la-ajdomain.Tpo -c ajdomain.c  -fno-common -DPIC -o .libs/libajax_la-ajdomain.o
mv -f .deps/libajax_la-ajassemread.Tpo .deps/libajax_la-ajassemread.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajexcept.lo -MD -MP -MF .deps/libajax_la-ajexcept.Tpo -c -o libajax_la-ajexcept.lo `test -f 'ajexcept.c' || echo './'`ajexcept.c
ajdmx.c:1557:27: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
        if((scophit->Type == ajEDomainTypeSCOP))
            ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
ajdmx.c:1557:27: note: remove extraneous parentheses around the comparison to silence this warning
        if((scophit->Type == ajEDomainTypeSCOP))
           ~              ^                   ~
ajdmx.c:1557:27: note: use '=' to turn this equality comparison into an assignment
        if((scophit->Type == ajEDomainTypeSCOP))
                          ^~
                          =
ajdmx.c:1559:33: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
        else if ((scophit->Type == ajEDomainTypeCATH))
                  ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
ajdmx.c:1559:33: note: remove extraneous parentheses around the comparison to silence this warning
        else if ((scophit->Type == ajEDomainTypeCATH))
                 ~              ^                   ~
ajdmx.c:1559:33: note: use '=' to turn this equality comparison into an assignment
        else if ((scophit->Type == ajEDomainTypeCATH))
                                ^~
                                =
mv -f .deps/libajax_la-ajdan.Tpo .deps/libajax_la-ajdan.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajfeat.lo -MD -MP -MF .deps/libajax_la-ajfeat.Tpo -c -o libajax_la-ajfeat.lo `test -f 'ajfeat.c' || echo './'`ajfeat.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajexcept.lo -MD -MP -MF .deps/libajax_la-ajexcept.Tpo -c ajexcept.c  -fno-common -DPIC -o .libs/libajax_la-ajexcept.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajfeat.lo -MD -MP -MF .deps/libajax_la-ajfeat.Tpo -c ajfeat.c  -fno-common -DPIC -o .libs/libajax_la-ajfeat.o
mv -f .deps/libajax_la-ajexcept.Tpo .deps/libajax_la-ajexcept.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajfeatread.lo -MD -MP -MF .deps/libajax_la-ajfeatread.Tpo -c -o libajax_la-ajfeatread.lo `test -f 'ajfeatread.c' || echo './'`ajfeatread.c
ajfeat.c:2063:11: warning: implicit declaration of function 'isspace' is invalid in C99 [-Wimplicit-function-declaration]
    while(isspace((ajint)*cp))
          ^
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajfeatread.lo -MD -MP -MF .deps/libajax_la-ajfeatread.Tpo -c ajfeatread.c  -fno-common -DPIC -o .libs/libajax_la-ajfeatread.o
2 warnings generated.
mv -f .deps/libajax_la-ajdmx.Tpo .deps/libajax_la-ajdmx.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajfeatwrite.lo -MD -MP -MF .deps/libajax_la-ajfeatwrite.Tpo -c -o libajax_la-ajfeatwrite.lo `test -f 'ajfeatwrite.c' || echo './'`ajfeatwrite.c
ajfeat.c:4301:11: warning: implicit declaration of function 'isalpha' is invalid in C99 [-Wimplicit-function-declaration]
    while(isalpha((ajint)*cp))
          ^
ajfeat.c:6033:10: warning: implicit declaration of function 'isdigit' is invalid in C99 [-Wimplicit-function-declaration]
            if(!isdigit((ajint)*cp))
                ^
ajfeat.c:6240:9: warning: implicit declaration of function 'islower' is invalid in C99 [-Wimplicit-function-declaration]
            if(islower((ajint)*cp++))
               ^
ajfeat.c:7089:34: warning: implicit declaration of function 'isupper' is invalid in C99 [-Wimplicit-function-declaration]
              else if(!isalpha(icp) || !isupper(icp))
                                        ^
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajfeatwrite.lo -MD -MP -MF .deps/libajax_la-ajfeatwrite.Tpo -c ajfeatwrite.c  -fno-common -DPIC -o .libs/libajax_la-ajfeatwrite.o
ajfeatread.c:3047:16: warning: implicit declaration of function 'isupper' is invalid in C99 [-Wimplicit-function-declaration]
            if(isupper((int)cp))
               ^
ajfeatread.c:4007:9: warning: implicit declaration of function 'isalpha' is invalid in C99 [-Wimplicit-function-declaration]
    if(!isalpha((ajint)*cp)) return ajFalse; /* starts with location */
        ^
ajfeatread.c:4008:9: warning: implicit declaration of function 'islower' is invalid in C99 [-Wimplicit-function-declaration]
    if(!islower((ajint)*cp)) return ajFalse; /* starts with location */
        ^
ajfeatread.c:4279:21: warning: implicit declaration of function 'isdigit' is invalid in C99 [-Wimplicit-function-declaration]
                if(!isdigit((ajint) *cp))
                    ^
ajfeatread.c:7499:10: warning: implicitly declaring library function 'strchr' with type 'char *(const char *, int)'
    cp = strchr(ajStrGetPtr(*text), '#');
         ^
ajfeatread.c:7499:10: note: please include the header <string.h> or explicitly provide a declaration for 'strchr'
mv -f .deps/libajax_la-ajcod.Tpo .deps/libajax_la-ajcod.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajfile.lo -MD -MP -MF .deps/libajax_la-ajfile.Tpo -c -o libajax_la-ajfile.lo `test -f 'ajfile.c' || echo './'`ajfile.c
ajfeatwrite.c:2925:12: warning: implicitly declaring library function 'strlen' with type 'unsigned long (const char *)'
    left = strlen(prefix);
           ^
ajfeatwrite.c:2925:12: note: please include the header <string.h> or explicitly provide a declaration for 'strlen'
mv -f .deps/libajax_la-ajalign.Tpo .deps/libajax_la-ajalign.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajfiledata.lo -MD -MP -MF .deps/libajax_la-ajfiledata.Tpo -c -o libajax_la-ajfiledata.lo `test -f 'ajfiledata.c' || echo './'`ajfiledata.c
mv -f .deps/libajax_la-ajarr.Tpo .deps/libajax_la-ajarr.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajfileio.lo -MD -MP -MF .deps/libajax_la-ajfileio.Tpo -c -o libajax_la-ajfileio.lo `test -f 'ajfileio.c' || echo './'`ajfileio.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajfile.lo -MD -MP -MF .deps/libajax_la-ajfile.Tpo -c ajfile.c  -fno-common -DPIC -o .libs/libajax_la-ajfile.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajfiledata.lo -MD -MP -MF .deps/libajax_la-ajfiledata.Tpo -c ajfiledata.c  -fno-common -DPIC -o .libs/libajax_la-ajfiledata.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajfileio.lo -MD -MP -MF .deps/libajax_la-ajfileio.Tpo -c ajfileio.c  -fno-common -DPIC -o .libs/libajax_la-ajfileio.o
mv -f .deps/libajax_la-ajdom.Tpo .deps/libajax_la-ajdom.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajfmt.lo -MD -MP -MF .deps/libajax_la-ajfmt.Tpo -c -o libajax_la-ajfmt.lo `test -f 'ajfmt.c' || echo './'`ajfmt.c
mv -f .deps/libajax_la-ajdomain.Tpo .deps/libajax_la-ajdomain.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajftp.lo -MD -MP -MF .deps/libajax_la-ajftp.Tpo -c -o libajax_la-ajftp.lo `test -f 'ajftp.c' || echo './'`ajftp.c
mv -f .deps/libajax_la-ajfiledata.Tpo .deps/libajax_la-ajfiledata.Plo
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajfmt.lo -MD -MP -MF .deps/libajax_la-ajfmt.Tpo -c ajfmt.c  -fno-common -DPIC -o .libs/libajax_la-ajfmt.o
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajhttp.lo -MD -MP -MF .deps/libajax_la-ajhttp.Tpo -c -o libajax_la-ajhttp.lo `test -f 'ajhttp.c' || echo './'`ajhttp.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajftp.lo -MD -MP -MF .deps/libajax_la-ajftp.Tpo -c ajftp.c  -fno-common -DPIC -o .libs/libajax_la-ajftp.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajhttp.lo -MD -MP -MF .deps/libajax_la-ajhttp.Tpo -c ajhttp.c  -fno-common -DPIC -o .libs/libajax_la-ajhttp.o
mv -f .deps/libajax_la-ajfileio.Tpo .deps/libajax_la-ajfileio.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajindex.lo -MD -MP -MF .deps/libajax_la-ajindex.Tpo -c -o libajax_la-ajindex.lo `test -f 'ajindex.c' || echo './'`ajindex.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajindex.lo -MD -MP -MF .deps/libajax_la-ajindex.Tpo -c ajindex.c  -fno-common -DPIC -o .libs/libajax_la-ajindex.o
ajhttp.c:721:6: warning: implicit declaration of function 'isspace' is invalid in C99 [-Wimplicit-function-declaration]
        if (isspace((int) *p))
            ^
ajhttp.c:815:9: warning: implicit declaration of function 'isdigit' is invalid in C99 [-Wimplicit-function-declaration]
    if(!isdigit((int) *p))
        ^
mv -f .deps/libajax_la-ajftp.Tpo .deps/libajax_la-ajftp.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajjava.lo -MD -MP -MF .deps/libajax_la-ajjava.Tpo -c -o libajax_la-ajjava.lo `test -f 'ajjava.c' || echo './'`ajjava.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajjava.lo -MD -MP -MF .deps/libajax_la-ajjava.Tpo -c ajjava.c  -fno-common -DPIC -o .libs/libajax_la-ajjava.o
2 warnings generated.
mv -f .deps/libajax_la-ajjava.Tpo .deps/libajax_la-ajjava.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajlist.lo -MD -MP -MF .deps/libajax_la-ajlist.Tpo -c -o libajax_la-ajlist.lo `test -f 'ajlist.c' || echo './'`ajlist.c
mv -f .deps/libajax_la-ajhttp.Tpo .deps/libajax_la-ajhttp.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajmath.lo -MD -MP -MF .deps/libajax_la-ajmath.Tpo -c -o libajax_la-ajmath.lo `test -f 'ajmath.c' || echo './'`ajmath.c
1 warning generated.
mv -f .deps/libajax_la-ajfeatwrite.Tpo .deps/libajax_la-ajfeatwrite.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajmatrices.lo -MD -MP -MF .deps/libajax_la-ajmatrices.Tpo -c -o libajax_la-ajmatrices.lo `test -f 'ajmatrices.c' || echo './'`ajmatrices.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajlist.lo -MD -MP -MF .deps/libajax_la-ajlist.Tpo -c ajlist.c  -fno-common -DPIC -o .libs/libajax_la-ajlist.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajmath.lo -MD -MP -MF .deps/libajax_la-ajmath.Tpo -c ajmath.c  -fno-common -DPIC -o .libs/libajax_la-ajmath.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajmatrices.lo -MD -MP -MF .deps/libajax_la-ajmatrices.Tpo -c ajmatrices.c  -fno-common -DPIC -o .libs/libajax_la-ajmatrices.o
mv -f .deps/libajax_la-ajmath.Tpo .deps/libajax_la-ajmath.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajmem.lo -MD -MP -MF .deps/libajax_la-ajmem.Tpo -c -o libajax_la-ajmem.lo `test -f 'ajmem.c' || echo './'`ajmem.c
5 warnings generated.
mv -f .deps/libajax_la-ajfeatread.Tpo .deps/libajax_la-ajfeatread.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajmess.lo -MD -MP -MF .deps/libajax_la-ajmess.Tpo -c -o libajax_la-ajmess.lo `test -f 'ajmess.c' || echo './'`ajmess.c
mv -f .deps/libajax_la-ajfile.Tpo .deps/libajax_la-ajfile.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajnam.lo -MD -MP -MF .deps/libajax_la-ajnam.Tpo -c -o libajax_la-ajnam.lo `test -f 'ajnam.c' || echo './'`ajnam.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajmem.lo -MD -MP -MF .deps/libajax_la-ajmem.Tpo -c ajmem.c  -fno-common -DPIC -o .libs/libajax_la-ajmem.o
5 warnings generated.
mv -f .deps/libajax_la-ajfeat.Tpo .deps/libajax_la-ajfeat.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajnexus.lo -MD -MP -MF .deps/libajax_la-ajnexus.Tpo -c -o libajax_la-ajnexus.lo `test -f 'ajnexus.c' || echo './'`ajnexus.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajmess.lo -MD -MP -MF .deps/libajax_la-ajmess.Tpo -c ajmess.c  -fno-common -DPIC -o .libs/libajax_la-ajmess.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajnam.lo -MD -MP -MF .deps/libajax_la-ajnam.Tpo -c ajnam.c  -fno-common -DPIC -o .libs/libajax_la-ajnam.o
mv -f .deps/libajax_la-ajmatrices.Tpo .deps/libajax_la-ajmatrices.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajobo.lo -MD -MP -MF .deps/libajax_la-ajobo.Tpo -c -o libajax_la-ajobo.lo `test -f 'ajobo.c' || echo './'`ajobo.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajnexus.lo -MD -MP -MF .deps/libajax_la-ajnexus.Tpo -c ajnexus.c  -fno-common -DPIC -o .libs/libajax_la-ajnexus.o
mv -f .deps/libajax_la-ajmem.Tpo .deps/libajax_la-ajmem.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajoboread.lo -MD -MP -MF .deps/libajax_la-ajoboread.Tpo -c -o libajax_la-ajoboread.lo `test -f 'ajoboread.c' || echo './'`ajoboread.c
mv -f .deps/libajax_la-ajfmt.Tpo .deps/libajax_la-ajfmt.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajobowrite.lo -MD -MP -MF .deps/libajax_la-ajobowrite.Tpo -c -o libajax_la-ajobowrite.lo `test -f 'ajobowrite.c' || echo './'`ajobowrite.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajobo.lo -MD -MP -MF .deps/libajax_la-ajobo.Tpo -c ajobo.c  -fno-common -DPIC -o .libs/libajax_la-ajobo.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajoboread.lo -MD -MP -MF .deps/libajax_la-ajoboread.Tpo -c ajoboread.c  -fno-common -DPIC -o .libs/libajax_la-ajoboread.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajobowrite.lo -MD -MP -MF .deps/libajax_la-ajobowrite.Tpo -c ajobowrite.c  -fno-common -DPIC -o .libs/libajax_la-ajobowrite.o
mv -f .deps/libajax_la-ajlist.Tpo .deps/libajax_la-ajlist.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajpat.lo -MD -MP -MF .deps/libajax_la-ajpat.Tpo -c -o libajax_la-ajpat.lo `test -f 'ajpat.c' || echo './'`ajpat.c
ajnam.c:4134:10: warning: implicit declaration of function 'isalpha' is invalid in C99 [-Wimplicit-function-declaration]
    if (!isalpha((int)*cp++))
         ^
ajnam.c:4142:6: warning: implicit declaration of function 'isalnum' is invalid in C99 [-Wimplicit-function-declaration]
        if(!isalnum((int)*cp) && (*cp != '_'))
            ^
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajpat.lo -MD -MP -MF .deps/libajax_la-ajpat.Tpo -c ajpat.c  -fno-common -DPIC -o .libs/libajax_la-ajpat.o
mv -f .deps/libajax_la-ajobo.Tpo .deps/libajax_la-ajobo.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajpdb.lo -MD -MP -MF .deps/libajax_la-ajpdb.Tpo -c -o libajax_la-ajpdb.lo `test -f 'ajpdb.c' || echo './'`ajpdb.c
mv -f .deps/libajax_la-ajmess.Tpo .deps/libajax_la-ajmess.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajpdbio.lo -MD -MP -MF .deps/libajax_la-ajpdbio.Tpo -c -o libajax_la-ajpdbio.lo `test -f 'ajpdbio.c' || echo './'`ajpdbio.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajpdb.lo -MD -MP -MF .deps/libajax_la-ajpdb.Tpo -c ajpdb.c  -fno-common -DPIC -o .libs/libajax_la-ajpdb.o
mv -f .deps/libajax_la-ajobowrite.Tpo .deps/libajax_la-ajobowrite.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajphylo.lo -MD -MP -MF .deps/libajax_la-ajphylo.Tpo -c -o libajax_la-ajphylo.lo `test -f 'ajphylo.c' || echo './'`ajphylo.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajpdbio.lo -MD -MP -MF .deps/libajax_la-ajpdbio.Tpo -c ajpdbio.c  -fno-common -DPIC -o .libs/libajax_la-ajpdbio.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajphylo.lo -MD -MP -MF .deps/libajax_la-ajphylo.Tpo -c ajphylo.c  -fno-common -DPIC -o .libs/libajax_la-ajphylo.o
mv -f .deps/libajax_la-ajpat.Tpo .deps/libajax_la-ajpat.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajquery.lo -MD -MP -MF .deps/libajax_la-ajquery.Tpo -c -o libajax_la-ajquery.lo `test -f 'ajquery.c' || echo './'`ajquery.c
ajpdbio.c:5750:40: warning: implicitly declaring library function 'strstr' with type 'char *(const char *, const char *)'
                        if ((loc_ptr = strstr(seqres_ptr,
                                       ^
ajpdbio.c:5750:40: note: please include the header <string.h> or explicitly provide a declaration for 'strstr'
ajphylo.c:1694:14: warning: implicit declaration of function 'isspace' is invalid in C99 [-Wimplicit-function-declaration]
                if(*cp && !isspace((int)*cp))
                           ^
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajquery.lo -MD -MP -MF .deps/libajax_la-ajquery.Tpo -c ajquery.c  -fno-common -DPIC -o .libs/libajax_la-ajquery.o
mv -f .deps/libajax_la-ajnexus.Tpo .deps/libajax_la-ajnexus.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajrange.lo -MD -MP -MF .deps/libajax_la-ajrange.Tpo -c -o libajax_la-ajrange.lo `test -f 'ajrange.c' || echo './'`ajrange.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajrange.lo -MD -MP -MF .deps/libajax_la-ajrange.Tpo -c ajrange.c  -fno-common -DPIC -o .libs/libajax_la-ajrange.o
mv -f .deps/libajax_la-ajoboread.Tpo .deps/libajax_la-ajoboread.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajreg.lo -MD -MP -MF .deps/libajax_la-ajreg.Tpo -c -o libajax_la-ajreg.lo `test -f 'ajreg.c' || echo './'`ajreg.c
1 warning generated.
mv -f .deps/libajax_la-ajphylo.Tpo .deps/libajax_la-ajphylo.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajreport.lo -MD -MP -MF .deps/libajax_la-ajreport.Tpo -c -o libajax_la-ajreport.lo `test -f 'ajreport.c' || echo './'`ajreport.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajreg.lo -MD -MP -MF .deps/libajax_la-ajreg.Tpo -c ajreg.c  -fno-common -DPIC -o .libs/libajax_la-ajreg.o
mv -f .deps/libajax_la-ajquery.Tpo .deps/libajax_la-ajquery.Plo
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajreport.lo -MD -MP -MF .deps/libajax_la-ajreport.Tpo -c ajreport.c  -fno-common -DPIC -o .libs/libajax_la-ajreport.o
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajrefseq.lo -MD -MP -MF .deps/libajax_la-ajrefseq.Tpo -c -o libajax_la-ajrefseq.lo `test -f 'ajrefseq.c' || echo './'`ajrefseq.c
ajreg.c:258:54: warning: implicitly declaring library function 'strlen' with type 'unsigned long (const char *)'
    status = pcre_exec(prog->pcre, prog->extra, str, strlen(str),
                                                     ^
ajreg.c:258:54: note: please include the header <string.h> or explicitly provide a declaration for 'strlen'
ajreg.c:595:2: warning: implicitly declaring library function 'memmove' with type 'void *(void *, const void *, unsigned long)'
        memmove((*dest)->Ptr, rp->orig, ilen);
        ^
ajreg.c:595:2: note: please include the header <string.h> or explicitly provide a declaration for 'memmove'
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajrefseq.lo -MD -MP -MF .deps/libajax_la-ajrefseq.Tpo -c ajrefseq.c  -fno-common -DPIC -o .libs/libajax_la-ajrefseq.o
2 warnings generated.
mv -f .deps/libajax_la-ajreg.Tpo .deps/libajax_la-ajreg.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajrefseqread.lo -MD -MP -MF .deps/libajax_la-ajrefseqread.Tpo -c -o libajax_la-ajrefseqread.lo `test -f 'ajrefseqread.c' || echo './'`ajrefseqread.c
mv -f .deps/libajax_la-ajrefseq.Tpo .deps/libajax_la-ajrefseq.Plo
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajrefseqread.lo -MD -MP -MF .deps/libajax_la-ajrefseqread.Tpo -c ajrefseqread.c  -fno-common -DPIC -o .libs/libajax_la-ajrefseqread.o
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajrefseqwrite.lo -MD -MP -MF .deps/libajax_la-ajrefseqwrite.Tpo -c -o libajax_la-ajrefseqwrite.lo `test -f 'ajrefseqwrite.c' || echo './'`ajrefseqwrite.c
mv -f .deps/libajax_la-ajrange.Tpo .deps/libajax_la-ajrange.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajresource.lo -MD -MP -MF .deps/libajax_la-ajresource.Tpo -c -o libajax_la-ajresource.lo `test -f 'ajresource.c' || echo './'`ajresource.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajrefseqwrite.lo -MD -MP -MF .deps/libajax_la-ajrefseqwrite.Tpo -c ajrefseqwrite.c  -fno-common -DPIC -o .libs/libajax_la-ajrefseqwrite.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajresource.lo -MD -MP -MF .deps/libajax_la-ajresource.Tpo -c ajresource.c  -fno-common -DPIC -o .libs/libajax_la-ajresource.o
mv -f .deps/libajax_la-ajrefseqwrite.Tpo .deps/libajax_la-ajrefseqwrite.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajresourceread.lo -MD -MP -MF .deps/libajax_la-ajresourceread.Tpo -c -o libajax_la-ajresourceread.lo `test -f 'ajresourceread.c' || echo './'`ajresourceread.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajresourceread.lo -MD -MP -MF .deps/libajax_la-ajresourceread.Tpo -c ajresourceread.c  -fno-common -DPIC -o .libs/libajax_la-ajresourceread.o
2 warnings generated.
mv -f .deps/libajax_la-ajnam.Tpo .deps/libajax_la-ajnam.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajresourcewrite.lo -MD -MP -MF .deps/libajax_la-ajresourcewrite.Tpo -c -o libajax_la-ajresourcewrite.lo `test -f 'ajresourcewrite.c' || echo './'`ajresourcewrite.c
mv -f .deps/libajax_la-ajresource.Tpo .deps/libajax_la-ajresource.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajseq.lo -MD -MP -MF .deps/libajax_la-ajseq.Tpo -c -o libajax_la-ajseq.lo `test -f 'ajseq.c' || echo './'`ajseq.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajresourcewrite.lo -MD -MP -MF .deps/libajax_la-ajresourcewrite.Tpo -c ajresourcewrite.c  -fno-common -DPIC -o .libs/libajax_la-ajresourcewrite.o
mv -f .deps/libajax_la-ajpdb.Tpo .deps/libajax_la-ajpdb.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajseqabi.lo -MD -MP -MF .deps/libajax_la-ajseqabi.Tpo -c -o libajax_la-ajseqabi.lo `test -f 'ajseqabi.c' || echo './'`ajseqabi.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajseq.lo -MD -MP -MF .deps/libajax_la-ajseq.Tpo -c ajseq.c  -fno-common -DPIC -o .libs/libajax_la-ajseq.o
mv -f .deps/libajax_la-ajrefseqread.Tpo .deps/libajax_la-ajrefseqread.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajseqbam.lo -MD -MP -MF .deps/libajax_la-ajseqbam.Tpo -c -o libajax_la-ajseqbam.lo `test -f 'ajseqbam.c' || echo './'`ajseqbam.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajseqabi.lo -MD -MP -MF .deps/libajax_la-ajseqabi.Tpo -c ajseqabi.c  -fno-common -DPIC -o .libs/libajax_la-ajseqabi.o
mv -f .deps/libajax_la-ajreport.Tpo .deps/libajax_la-ajreport.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajseqread.lo -MD -MP -MF .deps/libajax_la-ajseqread.Tpo -c -o libajax_la-ajseqread.lo `test -f 'ajseqread.c' || echo './'`ajseqread.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajseqbam.lo -MD -MP -MF .deps/libajax_la-ajseqbam.Tpo -c ajseqbam.c  -fno-common -DPIC -o .libs/libajax_la-ajseqbam.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajseqread.lo -MD -MP -MF .deps/libajax_la-ajseqread.Tpo -c ajseqread.c  -fno-common -DPIC -o .libs/libajax_la-ajseqread.o
mv -f .deps/libajax_la-ajresourcewrite.Tpo .deps/libajax_la-ajresourcewrite.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajseqtype.lo -MD -MP -MF .deps/libajax_la-ajseqtype.Tpo -c -o libajax_la-ajseqtype.lo `test -f 'ajseqtype.c' || echo './'`ajseqtype.c
mv -f .deps/libajax_la-ajresourceread.Tpo .deps/libajax_la-ajresourceread.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajseqwrite.lo -MD -MP -MF .deps/libajax_la-ajseqwrite.Tpo -c -o libajax_la-ajseqwrite.lo `test -f 'ajseqwrite.c' || echo './'`ajseqwrite.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajseqtype.lo -MD -MP -MF .deps/libajax_la-ajseqtype.Tpo -c ajseqtype.c  -fno-common -DPIC -o .libs/libajax_la-ajseqtype.o
mv -f .deps/libajax_la-ajseqabi.Tpo .deps/libajax_la-ajseqabi.Plo
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajseqwrite.lo -MD -MP -MF .deps/libajax_la-ajseqwrite.Tpo -c ajseqwrite.c  -fno-common -DPIC -o .libs/libajax_la-ajseqwrite.o
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajsort.lo -MD -MP -MF .deps/libajax_la-ajsort.Tpo -c -o libajax_la-ajsort.lo `test -f 'ajsort.c' || echo './'`ajsort.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajsort.lo -MD -MP -MF .deps/libajax_la-ajsort.Tpo -c ajsort.c  -fno-common -DPIC -o .libs/libajax_la-ajsort.o
ajseqtype.c:1105:12: warning: implicitly declaring library function 'strlen' with type 'unsigned long (const char *)'
    igap = strlen(seqCharGapTest);
           ^
ajseqtype.c:1105:12: note: please include the header <string.h> or explicitly provide a declaration for 'strlen'
ajseqtype.c:1136:35: warning: implicitly declaring library function 'strchr' with type 'char *(const char *, int)'
        for(cp = ajStrGetuniquePtr(seq); strchr(seqCharGapTest, *cp); cp++)
                                         ^
ajseqtype.c:1136:35: note: please include the header <string.h> or explicitly provide a declaration for 'strchr'
1 warning generated.
mv -f .deps/libajax_la-ajsort.Tpo .deps/libajax_la-ajsort.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajsql.lo -MD -MP -MF .deps/libajax_la-ajsql.Tpo -c -o libajax_la-ajsql.lo `test -f 'ajsql.c' || echo './'`ajsql.c
mv -f .deps/libajax_la-ajpdbio.Tpo .deps/libajax_la-ajpdbio.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajstr.lo -MD -MP -MF .deps/libajax_la-ajstr.Tpo -c -o libajax_la-ajstr.lo `test -f 'ajstr.c' || echo './'`ajstr.c
ajseqwrite.c:9645:19: warning: implicit declaration of function 'toupper' is invalid in C99 [-Wimplicit-function-declaration]
        check += count * toupper((ajint) cp[i]);
                         ^
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajsql.lo -MD -MP -MF .deps/libajax_la-ajsql.Tpo -c ajsql.c  -fno-common -DPIC -o .libs/libajax_la-ajsql.o
mv -f .deps/libajax_la-ajseqbam.Tpo .deps/libajax_la-ajseqbam.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajsys.lo -MD -MP -MF .deps/libajax_la-ajsys.Tpo -c -o libajax_la-ajsys.lo `test -f 'ajsys.c' || echo './'`ajsys.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajstr.lo -MD -MP -MF .deps/libajax_la-ajstr.Tpo -c ajstr.c  -fno-common -DPIC -o .libs/libajax_la-ajstr.o
2 warnings generated.
mv -f .deps/libajax_la-ajseqtype.Tpo .deps/libajax_la-ajseqtype.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajtable.lo -MD -MP -MF .deps/libajax_la-ajtable.Tpo -c -o libajax_la-ajtable.lo `test -f 'ajtable.c' || echo './'`ajtable.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajsys.lo -MD -MP -MF .deps/libajax_la-ajsys.Tpo -c ajsys.c  -fno-common -DPIC -o .libs/libajax_la-ajsys.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajtable.lo -MD -MP -MF .deps/libajax_la-ajtable.Tpo -c ajtable.c  -fno-common -DPIC -o .libs/libajax_la-ajtable.o
mv -f .deps/libajax_la-ajsql.Tpo .deps/libajax_la-ajsql.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajtagval.lo -MD -MP -MF .deps/libajax_la-ajtagval.Tpo -c -o libajax_la-ajtagval.lo `test -f 'ajtagval.c' || echo './'`ajtagval.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajtagval.lo -MD -MP -MF .deps/libajax_la-ajtagval.Tpo -c ajtagval.c  -fno-common -DPIC -o .libs/libajax_la-ajtagval.o
mv -f .deps/libajax_la-ajsys.Tpo .deps/libajax_la-ajsys.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajtax.lo -MD -MP -MF .deps/libajax_la-ajtax.Tpo -c -o libajax_la-ajtax.lo `test -f 'ajtax.c' || echo './'`ajtax.c
mv -f .deps/libajax_la-ajtagval.Tpo .deps/libajax_la-ajtagval.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajtaxread.lo -MD -MP -MF .deps/libajax_la-ajtaxread.Tpo -c -o libajax_la-ajtaxread.lo `test -f 'ajtaxread.c' || echo './'`ajtaxread.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajtax.lo -MD -MP -MF .deps/libajax_la-ajtax.Tpo -c ajtax.c  -fno-common -DPIC -o .libs/libajax_la-ajtax.o
mv -f .deps/libajax_la-ajseq.Tpo .deps/libajax_la-ajseq.Plo
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajtaxread.lo -MD -MP -MF .deps/libajax_la-ajtaxread.Tpo -c ajtaxread.c  -fno-common -DPIC -o .libs/libajax_la-ajtaxread.o
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajtaxwrite.lo -MD -MP -MF .deps/libajax_la-ajtaxwrite.Tpo -c -o libajax_la-ajtaxwrite.lo `test -f 'ajtaxwrite.c' || echo './'`ajtaxwrite.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajtaxwrite.lo -MD -MP -MF .deps/libajax_la-ajtaxwrite.Tpo -c ajtaxwrite.c  -fno-common -DPIC -o .libs/libajax_la-ajtaxwrite.o
mv -f .deps/libajax_la-ajtax.Tpo .deps/libajax_la-ajtax.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajtext.lo -MD -MP -MF .deps/libajax_la-ajtext.Tpo -c -o libajax_la-ajtext.lo `test -f 'ajtext.c' || echo './'`ajtext.c
ajtaxwrite.c:257:46: warning: use of logical '&&' with constant operand [-Wconstant-logical-operand]
    ajFmtPrintF(outf, "\t%u\t|", (tax->Flags && 2));
                                             ^  ~
ajtaxwrite.c:257:46: note: use '&' for a bitwise operation
    ajFmtPrintF(outf, "\t%u\t|", (tax->Flags && 2));
                                             ^~
                                             &
ajtaxwrite.c:257:46: note: remove constant to silence this warning
    ajFmtPrintF(outf, "\t%u\t|", (tax->Flags && 2));
                                            ~^~~~
ajtaxwrite.c:259:46: warning: use of logical '&&' with constant operand [-Wconstant-logical-operand]
    ajFmtPrintF(outf, "\t%u\t|", (tax->Flags && 4));
                                             ^  ~
ajtaxwrite.c:259:46: note: use '&' for a bitwise operation
    ajFmtPrintF(outf, "\t%u\t|", (tax->Flags && 4));
                                             ^~
                                             &
ajtaxwrite.c:259:46: note: remove constant to silence this warning
    ajFmtPrintF(outf, "\t%u\t|", (tax->Flags && 4));
                                            ~^~~~
ajtaxwrite.c:260:46: warning: use of logical '&&' with constant operand [-Wconstant-logical-operand]
    ajFmtPrintF(outf, "\t%u\t|", (tax->Flags && 8));
                                             ^  ~
ajtaxwrite.c:260:46: note: use '&' for a bitwise operation
    ajFmtPrintF(outf, "\t%u\t|", (tax->Flags && 8));
                                             ^~
                                             &
ajtaxwrite.c:260:46: note: remove constant to silence this warning
    ajFmtPrintF(outf, "\t%u\t|", (tax->Flags && 8));
                                            ~^~~~
ajtaxwrite.c:261:46: warning: use of logical '&&' with constant operand [-Wconstant-logical-operand]
    ajFmtPrintF(outf, "\t%u\t|", (tax->Flags && 16));
                                             ^  ~~
ajtaxwrite.c:261:46: note: use '&' for a bitwise operation
    ajFmtPrintF(outf, "\t%u\t|", (tax->Flags && 16));
                                             ^~
                                             &
ajtaxwrite.c:261:46: note: remove constant to silence this warning
    ajFmtPrintF(outf, "\t%u\t|", (tax->Flags && 16));
                                            ~^~~~~
ajtaxwrite.c:311:51: warning: use of logical '&&' with constant operand [-Wconstant-logical-operand]
    ajFmtPrintF(outf, "gcflag: %u\n", (tax->Flags && 2));
                                                  ^  ~
ajtaxwrite.c:311:51: note: use '&' for a bitwise operation
    ajFmtPrintF(outf, "gcflag: %u\n", (tax->Flags && 2));
                                                  ^~
                                                  &
ajtaxwrite.c:311:51: note: remove constant to silence this warning
    ajFmtPrintF(outf, "gcflag: %u\n", (tax->Flags && 2));
                                                 ~^~~~
ajtaxwrite.c:313:51: warning: use of logical '&&' with constant operand [-Wconstant-logical-operand]
    ajFmtPrintF(outf, "mgcflag %u\n", (tax->Flags && 4));
                                                  ^  ~
ajtaxwrite.c:313:51: note: use '&' for a bitwise operation
    ajFmtPrintF(outf, "mgcflag %u\n", (tax->Flags && 4));
                                                  ^~
                                                  &
ajtaxwrite.c:313:51: note: remove constant to silence this warning
    ajFmtPrintF(outf, "mgcflag %u\n", (tax->Flags && 4));
                                                 ~^~~~
ajtaxwrite.c:314:51: warning: use of logical '&&' with constant operand [-Wconstant-logical-operand]
    ajFmtPrintF(outf, "hidden: %u\n", (tax->Flags && 8));
                                                  ^  ~
ajtaxwrite.c:314:51: note: use '&' for a bitwise operation
    ajFmtPrintF(outf, "hidden: %u\n", (tax->Flags && 8));
                                                  ^~
                                                  &
ajtaxwrite.c:314:51: note: remove constant to silence this warning
    ajFmtPrintF(outf, "hidden: %u\n", (tax->Flags && 8));
                                                 ~^~~~
ajtaxwrite.c:315:55: warning: use of logical '&&' with constant operand [-Wconstant-logical-operand]
    ajFmtPrintF(outf, "nosequence: %u\n", (tax->Flags && 16));
                                                      ^  ~~
ajtaxwrite.c:315:55: note: use '&' for a bitwise operation
    ajFmtPrintF(outf, "nosequence: %u\n", (tax->Flags && 16));
                                                      ^~
                                                      &
ajtaxwrite.c:315:55: note: remove constant to silence this warning
    ajFmtPrintF(outf, "nosequence: %u\n", (tax->Flags && 16));
                                                     ~^~~~~
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajtext.lo -MD -MP -MF .deps/libajax_la-ajtext.Tpo -c ajtext.c  -fno-common -DPIC -o .libs/libajax_la-ajtext.o
mv -f .deps/libajax_la-ajtable.Tpo .deps/libajax_la-ajtable.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajtextread.lo -MD -MP -MF .deps/libajax_la-ajtextread.Tpo -c -o libajax_la-ajtextread.lo `test -f 'ajtextread.c' || echo './'`ajtextread.c
8 warnings generated.
mv -f .deps/libajax_la-ajtaxwrite.Tpo .deps/libajax_la-ajtaxwrite.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajtextwrite.lo -MD -MP -MF .deps/libajax_la-ajtextwrite.Tpo -c -o libajax_la-ajtextwrite.lo `test -f 'ajtextwrite.c' || echo './'`ajtextwrite.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajtextread.lo -MD -MP -MF .deps/libajax_la-ajtextread.Tpo -c ajtextread.c  -fno-common -DPIC -o .libs/libajax_la-ajtextread.o
mv -f .deps/libajax_la-ajtext.Tpo .deps/libajax_la-ajtext.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajtime.lo -MD -MP -MF .deps/libajax_la-ajtime.Tpo -c -o libajax_la-ajtime.lo `test -f 'ajtime.c' || echo './'`ajtime.c
mv -f .deps/libajax_la-ajtaxread.Tpo .deps/libajax_la-ajtaxread.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajtranslate.lo -MD -MP -MF .deps/libajax_la-ajtranslate.Tpo -c -o libajax_la-ajtranslate.lo `test -f 'ajtranslate.c' || echo './'`ajtranslate.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajtextwrite.lo -MD -MP -MF .deps/libajax_la-ajtextwrite.Tpo -c ajtextwrite.c  -fno-common -DPIC -o .libs/libajax_la-ajtextwrite.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajtime.lo -MD -MP -MF .deps/libajax_la-ajtime.Tpo -c ajtime.c  -fno-common -DPIC -o .libs/libajax_la-ajtime.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajtranslate.lo -MD -MP -MF .deps/libajax_la-ajtranslate.Tpo -c ajtranslate.c  -fno-common -DPIC -o .libs/libajax_la-ajtranslate.o
mv -f .deps/libajax_la-ajtextwrite.Tpo .deps/libajax_la-ajtextwrite.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajtree.lo -MD -MP -MF .deps/libajax_la-ajtree.Tpo -c -o libajax_la-ajtree.lo `test -f 'ajtree.c' || echo './'`ajtree.c
mv -f .deps/libajax_la-ajtime.Tpo .deps/libajax_la-ajtime.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajurl.lo -MD -MP -MF .deps/libajax_la-ajurl.Tpo -c -o libajax_la-ajurl.lo `test -f 'ajurl.c' || echo './'`ajurl.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajtree.lo -MD -MP -MF .deps/libajax_la-ajtree.Tpo -c ajtree.c  -fno-common -DPIC -o .libs/libajax_la-ajtree.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajurl.lo -MD -MP -MF .deps/libajax_la-ajurl.Tpo -c ajurl.c  -fno-common -DPIC -o .libs/libajax_la-ajurl.o
mv -f .deps/libajax_la-ajtextread.Tpo .deps/libajax_la-ajtextread.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajurlread.lo -MD -MP -MF .deps/libajax_la-ajurlread.Tpo -c -o libajax_la-ajurlread.lo `test -f 'ajurlread.c' || echo './'`ajurlread.c
mv -f .deps/libajax_la-ajtranslate.Tpo .deps/libajax_la-ajtranslate.Plo
mv -f .deps/libajax_la-ajurl.Tpo .deps/libajax_la-ajurl.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajurlwrite.lo -MD -MP -MF .deps/libajax_la-ajurlwrite.Tpo -c -o libajax_la-ajurlwrite.lo `test -f 'ajurlwrite.c' || echo './'`ajurlwrite.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajutil.lo -MD -MP -MF .deps/libajax_la-ajutil.Tpo -c -o libajax_la-ajutil.lo `test -f 'ajutil.c' || echo './'`ajutil.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajurlread.lo -MD -MP -MF .deps/libajax_la-ajurlread.Tpo -c ajurlread.c  -fno-common -DPIC -o .libs/libajax_la-ajurlread.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajutil.lo -MD -MP -MF .deps/libajax_la-ajutil.Tpo -c ajutil.c  -fno-common -DPIC -o .libs/libajax_la-ajutil.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajurlwrite.lo -MD -MP -MF .deps/libajax_la-ajurlwrite.Tpo -c ajurlwrite.c  -fno-common -DPIC -o .libs/libajax_la-ajurlwrite.o
mv -f .deps/libajax_la-ajtree.Tpo .deps/libajax_la-ajtree.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajvar.lo -MD -MP -MF .deps/libajax_la-ajvar.Tpo -c -o libajax_la-ajvar.lo `test -f 'ajvar.c' || echo './'`ajvar.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajvar.lo -MD -MP -MF .deps/libajax_la-ajvar.Tpo -c ajvar.c  -fno-common -DPIC -o .libs/libajax_la-ajvar.o
1 warning generated.
mv -f .deps/libajax_la-ajseqwrite.Tpo .deps/libajax_la-ajseqwrite.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajvarbcf.lo -MD -MP -MF .deps/libajax_la-ajvarbcf.Tpo -c -o libajax_la-ajvarbcf.lo `test -f 'ajvarbcf.c' || echo './'`ajvarbcf.c
mv -f .deps/libajax_la-ajurlwrite.Tpo .deps/libajax_la-ajurlwrite.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajvarread.lo -MD -MP -MF .deps/libajax_la-ajvarread.Tpo -c -o libajax_la-ajvarread.lo `test -f 'ajvarread.c' || echo './'`ajvarread.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajvarbcf.lo -MD -MP -MF .deps/libajax_la-ajvarbcf.Tpo -c ajvarbcf.c  -fno-common -DPIC -o .libs/libajax_la-ajvarbcf.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajvarread.lo -MD -MP -MF .deps/libajax_la-ajvarread.Tpo -c ajvarread.c  -fno-common -DPIC -o .libs/libajax_la-ajvarread.o
mv -f .deps/libajax_la-ajvar.Tpo .deps/libajax_la-ajvar.Plo
mv -f .deps/libajax_la-ajurlread.Tpo .deps/libajax_la-ajurlread.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajvarwrite.lo -MD -MP -MF .deps/libajax_la-ajvarwrite.Tpo -c -o libajax_la-ajvarwrite.lo `test -f 'ajvarwrite.c' || echo './'`ajvarwrite.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I.   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM="\"Darwin\"" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajax_la-ajvector.lo -MD -MP -MF .deps/libajax_la-ajvector.Tpo -c -o libajax_la-ajvector.lo `test -f 'ajvector.c' || echo './'`ajvector.c
mv -f .deps/libajax_la-ajutil.Tpo .deps/libajax_la-ajutil.Plo
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajvector.lo -MD -MP -MF .deps/libajax_la-ajvector.Tpo -c ajvector.c  -fno-common -DPIC -o .libs/libajax_la-ajvector.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include/mysql -I/sw/opt/postgresql-9.2/include -DAJAX_FIXED_ROOT=\"/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/emboss\" -DAJAX_SYSTEM=\"Darwin\" -DPREFIX=\"/sw\" -I/sw/include -DAJ_MACOSXLF -O2 -MT libajax_la-ajvarwrite.lo -MD -MP -MF .deps/libajax_la-ajvarwrite.Tpo -c ajvarwrite.c  -fno-common -DPIC -o .libs/libajax_la-ajvarwrite.o
mv -f .deps/libajax_la-ajstr.Tpo .deps/libajax_la-ajstr.Plo
mv -f .deps/libajax_la-ajvector.Tpo .deps/libajax_la-ajvector.Plo
mv -f .deps/libajax_la-ajvarbcf.Tpo .deps/libajax_la-ajvarbcf.Plo
mv -f .deps/libajax_la-ajvarwrite.Tpo .deps/libajax_la-ajvarwrite.Plo
mv -f .deps/libajax_la-ajvarread.Tpo .deps/libajax_la-ajvarread.Plo
mv -f .deps/libajax_la-ajseqread.Tpo .deps/libajax_la-ajseqread.Plo
mv -f .deps/libajax_la-ajindex.Tpo .deps/libajax_la-ajindex.Plo
/bin/sh ../../libtool --tag=CC   --mode=link gcc    -O2 -version-info 6:4:0 -no-undefined  -no-undefined -L/sw/lib  -L/sw/lib/mysql -lmysqlclient -lz -lm -no-undefined -L/sw/opt/postgresql-9.2/lib -lpq -no-undefined  -L/sw/lib -o libajax.la -rpath /sw/lib/EMBOSS/lib libajax_la-ajalign.lo libajax_la-ajarr.lo libajax_la-ajassem.lo libajax_la-ajassemread.lo libajax_la-ajassemwrite.lo libajax_la-ajassert.lo libajax_la-ajbamindex.lo libajax_la-ajbase.lo libajax_la-ajcall.lo libajax_la-ajcigar.lo libajax_la-ajcod.lo libajax_la-ajdan.lo libajax_la-ajdmx.lo libajax_la-ajdom.lo libajax_la-ajdomain.lo libajax_la-ajexcept.lo libajax_la-ajfeat.lo libajax_la-ajfeatread.lo libajax_la-ajfeatwrite.lo libajax_la-ajfile.lo libajax_la-ajfiledata.lo libajax_la-ajfileio.lo libajax_la-ajfmt.lo libajax_la-ajftp.lo libajax_la-ajhttp.lo libajax_la-ajindex.lo libajax_la-ajjava.lo libajax_la-ajlist.lo libajax_la-ajmath.lo libajax_la-ajmatrices.lo libajax_la-ajmem.lo libajax_la-ajmess.lo libajax_la-ajnam.lo libajax_la-ajnexus.lo libajax_la-ajobo.lo libajax_la-ajoboread.lo libajax_la-ajobowrite.lo libajax_la-ajpat.lo libajax_la-ajpdb.lo libajax_la-ajpdbio.lo libajax_la-ajphylo.lo libajax_la-ajquery.lo libajax_la-ajrange.lo libajax_la-ajreg.lo libajax_la-ajreport.lo libajax_la-ajrefseq.lo libajax_la-ajrefseqread.lo libajax_la-ajrefseqwrite.lo libajax_la-ajresource.lo libajax_la-ajresourceread.lo libajax_la-ajresourcewrite.lo libajax_la-ajseq.lo libajax_la-ajseqabi.lo libajax_la-ajseqbam.lo libajax_la-ajseqread.lo libajax_la-ajseqtype.lo libajax_la-ajseqwrite.lo libajax_la-ajsort.lo libajax_la-ajsql.lo libajax_la-ajstr.lo libajax_la-ajsys.lo libajax_la-ajtable.lo libajax_la-ajtagval.lo libajax_la-ajtax.lo libajax_la-ajtaxread.lo libajax_la-ajtaxwrite.lo libajax_la-ajtext.lo libajax_la-ajtextread.lo libajax_la-ajtextwrite.lo libajax_la-ajtime.lo libajax_la-ajtranslate.lo libajax_la-ajtree.lo libajax_la-ajurl.lo libajax_la-ajurlread.lo libajax_la-ajurlwrite.lo libajax_la-ajutil.lo libajax_la-ajvar.lo libajax_la-ajvarbcf.lo libajax_la-ajvarread.lo libajax_la-ajvarwrite.lo libajax_la-ajvector.lo -lexpat -lpcre -L/sw/opt/postgresql-9.2/lib -lpq -L/sw/lib  -L/sw/lib/mysql -lmysqlclient -lz -lm -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -dynamiclib  -o .libs/libajax.6.dylib  .libs/libajax_la-ajalign.o .libs/libajax_la-ajarr.o .libs/libajax_la-ajassem.o .libs/libajax_la-ajassemread.o .libs/libajax_la-ajassemwrite.o .libs/libajax_la-ajassert.o .libs/libajax_la-ajbamindex.o .libs/libajax_la-ajbase.o .libs/libajax_la-ajcall.o .libs/libajax_la-ajcigar.o .libs/libajax_la-ajcod.o .libs/libajax_la-ajdan.o .libs/libajax_la-ajdmx.o .libs/libajax_la-ajdom.o .libs/libajax_la-ajdomain.o .libs/libajax_la-ajexcept.o .libs/libajax_la-ajfeat.o .libs/libajax_la-ajfeatread.o .libs/libajax_la-ajfeatwrite.o .libs/libajax_la-ajfile.o .libs/libajax_la-ajfiledata.o .libs/libajax_la-ajfileio.o .libs/libajax_la-ajfmt.o .libs/libajax_la-ajftp.o .libs/libajax_la-ajhttp.o .libs/libajax_la-ajindex.o .libs/libajax_la-ajjava.o .libs/libajax_la-ajlist.o .libs/libajax_la-ajmath.o .libs/libajax_la-ajmatrices.o .libs/libajax_la-ajmem.o .libs/libajax_la-ajmess.o .libs/libajax_la-ajnam.o .libs/libajax_la-ajnexus.o .libs/libajax_la-ajobo.o .libs/libajax_la-ajoboread.o .libs/libajax_la-ajobowrite.o .libs/libajax_la-ajpat.o .libs/libajax_la-ajpdb.o .libs/libajax_la-ajpdbio.o .libs/libajax_la-ajphylo.o .libs/libajax_la-ajquery.o .libs/libajax_la-ajrange.o .libs/libajax_la-ajreg.o .libs/libajax_la-ajreport.o .libs/libajax_la-ajrefseq.o .libs/libajax_la-ajrefseqread.o .libs/libajax_la-ajrefseqwrite.o .libs/libajax_la-ajresource.o .libs/libajax_la-ajresourceread.o .libs/libajax_la-ajresourcewrite.o .libs/libajax_la-ajseq.o .libs/libajax_la-ajseqabi.o .libs/libajax_la-ajseqbam.o .libs/libajax_la-ajseqread.o .libs/libajax_la-ajseqtype.o .libs/libajax_la-ajseqwrite.o .libs/libajax_la-ajsort.o .libs/libajax_la-ajsql.o .libs/libajax_la-ajstr.o .libs/libajax_la-ajsys.o .libs/libajax_la-ajtable.o .libs/libajax_la-ajtagval.o .libs/libajax_la-ajtax.o .libs/libajax_la-ajtaxread.o .libs/libajax_la-ajtaxwrite.o .libs/libajax_la-ajtext.o .libs/libajax_la-ajtextread.o .libs/libajax_la-ajtextwrite.o .libs/libajax_la-ajtime.o .libs/libajax_la-ajtranslate.o .libs/libajax_la-ajtree.o .libs/libajax_la-ajurl.o .libs/libajax_la-ajurlread.o .libs/libajax_la-ajurlwrite.o .libs/libajax_la-ajutil.o .libs/libajax_la-ajvar.o .libs/libajax_la-ajvarbcf.o .libs/libajax_la-ajvarread.o .libs/libajax_la-ajvarwrite.o .libs/libajax_la-ajvector.o   -L/sw/lib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm  -O2   -pthread -install_name  /sw/lib/EMBOSS/lib/libajax.6.dylib -compatibility_version 7 -current_version 7.4 -Wl,-single_module
clang: warning: argument unused during compilation: '-pthread'
libtool: link: (cd ".libs" && rm -f "libajax.dylib" && ln -s "libajax.6.dylib" "libajax.dylib")
libtool: link: ( cd ".libs" && rm -f "libajax.la" && ln -s "../libajax.la" "libajax.la" )
Making all in graphics
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/sw/include/plplot  -DUSE_PLXSFNAM_SHIM -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajaxg_la-ajgraph.lo -MD -MP -MF .deps/libajaxg_la-ajgraph.Tpo -c -o libajaxg_la-ajgraph.lo `test -f 'ajgraph.c' || echo './'`ajgraph.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/sw/include/plplot  -DUSE_PLXSFNAM_SHIM -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajaxg_la-ajhist.lo -MD -MP -MF .deps/libajaxg_la-ajhist.Tpo -c -o libajaxg_la-ajhist.lo `test -f 'ajhist.c' || echo './'`ajhist.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/sw/include/plplot -DUSE_PLXSFNAM_SHIM -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libajaxg_la-ajhist.lo -MD -MP -MF .deps/libajaxg_la-ajhist.Tpo -c ajhist.c  -fno-common -DPIC -o .libs/libajaxg_la-ajhist.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/sw/include/plplot -DUSE_PLXSFNAM_SHIM -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libajaxg_la-ajgraph.lo -MD -MP -MF .deps/libajaxg_la-ajgraph.Tpo -c ajgraph.c  -fno-common -DPIC -o .libs/libajaxg_la-ajgraph.o
ajhist.c:410:8: warning: incompatible pointer types assigning to 'PLFLT *' (aka 'double *') from 'float *' [-Wincompatible-pointer-types]
                data = thys->hists[j]->data;
                     ^ ~~~~~~~~~~~~~~~~~~~~
ajhist.c:437:8: warning: incompatible pointer types assigning to 'PLFLT *' (aka 'double *') from 'float *' [-Wincompatible-pointer-types]
                data = thys->hists[j]->data;
                     ^ ~~~~~~~~~~~~~~~~~~~~
ajhist.c:457:8: warning: incompatible pointer types assigning to 'PLFLT *' (aka 'double *') from 'float *' [-Wincompatible-pointer-types]
                data = thys->hists[j]->data;
                     ^ ~~~~~~~~~~~~~~~~~~~~
ajhist.c:474:7: warning: incompatible pointer types assigning to 'PLFLT *' (aka 'double *') from 'float *' [-Wincompatible-pointer-types]
        data = thys->hists[0]->data;
             ^ ~~~~~~~~~~~~~~~~~~~~
ajhist.c:539:11: warning: incompatible pointer types assigning to 'PLFLT *' (aka 'double *') from 'float *' [-Wincompatible-pointer-types]
            data = thys->hists[i]->data;
                 ^ ~~~~~~~~~~~~~~~~~~~~
ajhist.c:592:11: warning: incompatible pointer types assigning to 'PLFLT *' (aka 'double *') from 'float *' [-Wincompatible-pointer-types]
            data = thys->hists[i]->data;
                 ^ ~~~~~~~~~~~~~~~~~~~~
ajhist.c:636:11: warning: incompatible pointer types assigning to 'PLFLT *' (aka 'double *') from 'float *' [-Wincompatible-pointer-types]
            data = thys->hists[i]->data;
                 ^ ~~~~~~~~~~~~~~~~~~~~
ajhist.c:1122:33: warning: incompatible pointer types assigning to 'float *' from 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
    thys->hists[indexnum]->data = data;
                                ^ ~~~~
ajgraph.c:973:29: warning: incompatible pointer types passing 'char *' to parameter of type 'char **'; take the address with & [-Wincompatible-pointer-types]
        fullname = asprintf(fullname,"%s%s", ajStrGetPtr(txt), ext);
                            ^~~~~~~~
                            &
/usr/include/stdio.h:453:33: note: passing argument to parameter here
int      asprintf(char ** __restrict, const char * __restrict, ...) __printflike(2, 3);
                                    ^
ajgraph.c:973:18: warning: incompatible integer to pointer conversion assigning to 'char *' from 'int' [-Wint-conversion]
        fullname = asprintf(fullname,"%s%s", ajStrGetPtr(txt), ext);
                 ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ajgraph.c:1852:9: warning: incompatible pointer types passing 'float *' to parameter of type 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        plgchr(defheight,currentscale);
               ^~~~~~~~~
/sw/include/plplot/plplot.h:1024:18: note: passing argument to parameter 'p_def' here
c_plgchr( PLFLT *p_def, PLFLT *p_ht );
                 ^
ajgraph.c:1852:19: warning: incompatible pointer types passing 'float *' to parameter of type 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        plgchr(defheight,currentscale);
                         ^~~~~~~~~~~~
/sw/include/plplot/plplot.h:1024:32: note: passing argument to parameter 'p_ht' here
c_plgchr( PLFLT *p_def, PLFLT *p_ht );
                               ^
ajgraph.c:1917:10: warning: incompatible pointer types passing 'float *' to parameter of type 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        plgpage(xp,yp,xleng,yleng,xoff,yoff);
                ^~
/sw/include/plplot/plplot.h:1099:19: note: passing argument to parameter 'p_xp' here
c_plgpage( PLFLT *p_xp, PLFLT *p_yp,
                  ^
ajgraph.c:1917:13: warning: incompatible pointer types passing 'float *' to parameter of type 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        plgpage(xp,yp,xleng,yleng,xoff,yoff);
                   ^~
/sw/include/plplot/plplot.h:1099:32: note: passing argument to parameter 'p_yp' here
c_plgpage( PLFLT *p_xp, PLFLT *p_yp,
                               ^
ajgraph.c:2342:16: warning: incompatible pointer types passing 'PLFLT [5]' to parameter of type 'float *' [-Wincompatible-pointer-types]
        GraphArray(5, xa, ya);
                      ^~
ajgraph.c:56:14: note: passing argument to parameter 'x' here
                           float *x, float *y);
                                  ^
ajgraph.c:2342:20: warning: incompatible pointer types passing 'PLFLT [5]' to parameter of type 'float *' [-Wincompatible-pointer-types]
        GraphArray(5, xa, ya);
                          ^~
ajgraph.c:56:24: note: passing argument to parameter 'y' here
                           float *x, float *y);
                                            ^
ajgraph.c:2387:15: warning: incompatible pointer types passing 'PLFLT [4]' to parameter of type 'float *' [-Wincompatible-pointer-types]
        GraphFill(4, xa, ya);
                     ^~
ajgraph.c:72:54: note: passing argument to parameter 'x' here
static void     GraphFill(ajuint numofpoints, float *x, float *y);
                                                     ^
ajgraph.c:2387:19: warning: incompatible pointer types passing 'PLFLT [4]' to parameter of type 'float *' [-Wincompatible-pointer-types]
        GraphFill(4, xa, ya);
                         ^~
ajgraph.c:72:64: note: passing argument to parameter 'y' here
static void     GraphFill(ajuint numofpoints, float *x, float *y);
                                                               ^
ajgraph.c:2431:21: warning: incompatible pointer types passing 'PLFLT [361]' to parameter of type 'float *' [-Wincompatible-pointer-types]
    GraphArray(361, xa,ya);
                    ^~
ajgraph.c:56:14: note: passing argument to parameter 'x' here
                           float *x, float *y);
                                  ^
ajgraph.c:2431:24: warning: incompatible pointer types passing 'PLFLT [361]' to parameter of type 'float *' [-Wincompatible-pointer-types]
    GraphArray(361, xa,ya);
                       ^~
ajgraph.c:56:24: note: passing argument to parameter 'y' here
                           float *x, float *y);
                                            ^
ajgraph.c:2472:19: warning: incompatible pointer types passing 'PLFLT [5]' to parameter of type 'float *' [-Wincompatible-pointer-types]
    GraphArray(5, xa, ya);
                  ^~
ajgraph.c:56:14: note: passing argument to parameter 'x' here
                           float *x, float *y);
                                  ^
ajgraph.c:2472:23: warning: incompatible pointer types passing 'PLFLT [5]' to parameter of type 'float *' [-Wincompatible-pointer-types]
    GraphArray(5, xa, ya);
                      ^~
ajgraph.c:56:24: note: passing argument to parameter 'y' here
                           float *x, float *y);
                                            ^
ajgraph.c:2511:18: warning: incompatible pointer types passing 'PLFLT [4]' to parameter of type 'float *' [-Wincompatible-pointer-types]
    GraphFill(4, xa, ya);
                 ^~
ajgraph.c:72:54: note: passing argument to parameter 'x' here
static void     GraphFill(ajuint numofpoints, float *x, float *y);
                                                     ^
ajgraph.c:2511:22: warning: incompatible pointer types passing 'PLFLT [4]' to parameter of type 'float *' [-Wincompatible-pointer-types]
    GraphFill(4, xa, ya);
                     ^~
ajgraph.c:72:64: note: passing argument to parameter 'y' here
static void     GraphFill(ajuint numofpoints, float *x, float *y);
                                                               ^
ajgraph.c:2597:16: warning: incompatible pointer types passing 'PLFLT [5]' to parameter of type 'float *' [-Wincompatible-pointer-types]
        GraphArray(5, xa, ya);
                      ^~
ajgraph.c:56:14: note: passing argument to parameter 'x' here
                           float *x, float *y);
                                  ^
ajgraph.c:2597:20: warning: incompatible pointer types passing 'PLFLT [5]' to parameter of type 'float *' [-Wincompatible-pointer-types]
        GraphArray(5, xa, ya);
                          ^~
ajgraph.c:56:24: note: passing argument to parameter 'y' here
                           float *x, float *y);
                                            ^
ajgraph.c:2643:15: warning: incompatible pointer types passing 'PLFLT [4]' to parameter of type 'float *' [-Wincompatible-pointer-types]
        GraphFill(4, xa, ya);
                     ^~
ajgraph.c:72:54: note: passing argument to parameter 'x' here
static void     GraphFill(ajuint numofpoints, float *x, float *y);
                                                     ^
ajgraph.c:2643:19: warning: incompatible pointer types passing 'PLFLT [4]' to parameter of type 'float *' [-Wincompatible-pointer-types]
        GraphFill(4, xa, ya);
                         ^~
ajgraph.c:72:64: note: passing argument to parameter 'y' here
static void     GraphFill(ajuint numofpoints, float *x, float *y);
                                                               ^
ajgraph.c:2909:18: warning: incompatible pointer types passing 'PLFLT *' (aka 'double *') to parameter of type 'float *' [-Wincompatible-pointer-types]
    GraphSymbols(xx, yy, num, 17);
                 ^~
ajgraph.c:94:37: note: passing argument to parameter 'xx1' here
static void     GraphSymbols(float *xx1, float *yy1, ajuint numofdots,
                                    ^
ajgraph.c:2909:22: warning: incompatible pointer types passing 'PLFLT *' (aka 'double *') to parameter of type 'float *' [-Wincompatible-pointer-types]
    GraphSymbols(xx, yy, num, 17);
                     ^~
ajgraph.c:94:49: note: passing argument to parameter 'yy1' here
static void     GraphSymbols(float *xx1, float *yy1, ajuint numofdots,
                                                ^
ajgraph.c:3011:21: warning: incompatible pointer types passing 'PLFLT *' (aka 'double *') to parameter of type 'float *' [-Wincompatible-pointer-types]
    GraphArray(num, xx, yy);
                    ^~
ajgraph.c:56:14: note: passing argument to parameter 'x' here
                           float *x, float *y);
                                  ^
ajgraph.c:3011:25: warning: incompatible pointer types passing 'PLFLT *' (aka 'double *') to parameter of type 'float *' [-Wincompatible-pointer-types]
    GraphArray(num, xx, yy);
                        ^~
ajgraph.c:56:24: note: passing argument to parameter 'y' here
                           float *x, float *y);
                                            ^
ajgraph.c:3034:20: warning: incompatible pointer types passing 'PLFLT *' (aka 'double *') to parameter of type 'float *' [-Wincompatible-pointer-types]
    GraphFill(num, xx, yy);
                   ^~
ajgraph.c:72:54: note: passing argument to parameter 'x' here
static void     GraphFill(ajuint numofpoints, float *x, float *y);
                                                     ^
ajgraph.c:3034:24: warning: incompatible pointer types passing 'PLFLT *' (aka 'double *') to parameter of type 'float *' [-Wincompatible-pointer-types]
    GraphFill(num, xx, yy);
                       ^~
ajgraph.c:72:64: note: passing argument to parameter 'y' here
static void     GraphFill(ajuint numofpoints, float *x, float *y);
                                                               ^
ajgraph.c:3060:18: warning: incompatible pointer types passing 'PLFLT *' (aka 'double *') to parameter of type 'float *' [-Wincompatible-pointer-types]
    GraphSymbols(xx, yy, num, symbol);
                 ^~
ajgraph.c:94:37: note: passing argument to parameter 'xx1' here
static void     GraphSymbols(float *xx1, float *yy1, ajuint numofdots,
                                    ^
ajgraph.c:3060:22: warning: incompatible pointer types passing 'PLFLT *' (aka 'double *') to parameter of type 'float *' [-Wincompatible-pointer-types]
    GraphSymbols(xx, yy, num, symbol);
                     ^~
ajgraph.c:94:49: note: passing argument to parameter 'yy1' here
static void     GraphSymbols(float *xx1, float *yy1, ajuint numofdots,
                                                ^
ajgraph.c:3164:27: warning: incompatible pointer types passing 'PLFLT *' (aka 'double *') to parameter of type 'float *' [-Wincompatible-pointer-types]
    ajGraphicsGetCharsize(&origcharsize,&origcharht);
                          ^~~~~~~~~~~~~
ajgraph.c:1838:35: note: passing argument to parameter 'defheight' here
void ajGraphicsGetCharsize(float *defheight, float *currentscale)
                                  ^
ajgraph.c:3164:41: warning: incompatible pointer types passing 'PLFLT *' (aka 'double *') to parameter of type 'float *' [-Wincompatible-pointer-types]
    ajGraphicsGetCharsize(&origcharsize,&origcharht);
                                        ^~~~~~~~~~~
ajgraph.c:1838:53: note: passing argument to parameter 'currentscale' here
void ajGraphicsGetCharsize(float *defheight, float *currentscale)
                                                    ^
ajgraph.c:3207:8: warning: incompatible pointer types assigning to 'PLFLT *' (aka 'double *') from 'float *' [-Wincompatible-pointer-types]
    xy = (float *)AJALLOC( 2*sizeof(float) );
       ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ajgraph.c:3372:25: warning: incompatible pointer types passing 'float *' to parameter of type 'const PLFLT *' (aka 'const double *') [-Wincompatible-pointer-types]
    GraphCheckPoints(0, &f, &f);
                        ^~
ajgraph.c:62:56: note: passing argument to parameter 'x' here
static void     GraphCheckPoints(ajint n, const PLFLT *x, const PLFLT *y);
                                                       ^
ajgraph.c:3372:29: warning: incompatible pointer types passing 'float *' to parameter of type 'const PLFLT *' (aka 'const double *') [-Wincompatible-pointer-types]
    GraphCheckPoints(0, &f, &f);
                            ^~
ajgraph.c:62:72: note: passing argument to parameter 'y' here
static void     GraphCheckPoints(ajint n, const PLFLT *x, const PLFLT *y);
                                                                       ^
ajgraph.c:4627:10: warning: incompatible pointer types passing 'float *' to parameter of type 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        plgpage(xp,yp,xleng,yleng,xoff,yoff);
                ^~
/sw/include/plplot/plplot.h:1099:19: note: passing argument to parameter 'p_xp' here
c_plgpage( PLFLT *p_xp, PLFLT *p_yp,
                  ^
ajgraph.c:4627:13: warning: incompatible pointer types passing 'float *' to parameter of type 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        plgpage(xp,yp,xleng,yleng,xoff,yoff);
                   ^~
/sw/include/plplot/plplot.h:1099:32: note: passing argument to parameter 'p_yp' here
c_plgpage( PLFLT *p_xp, PLFLT *p_yp,
                               ^
ajgraph.c:7400:22: warning: incompatible pointer types passing 'float *' to parameter of type 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        plline(numofpoints, x,y);
                            ^
/sw/include/plplot/plplot.h:1214:27: note: passing argument to parameter 'x' here
c_plline( PLINT n, PLFLT *x, PLFLT *y );
                          ^
ajgraph.c:7400:24: warning: incompatible pointer types passing 'float *' to parameter of type 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        plline(numofpoints, x,y);
                              ^
/sw/include/plplot/plplot.h:1214:37: note: passing argument to parameter 'y' here
c_plline( PLINT n, PLFLT *x, PLFLT *y );
                                    ^
ajgraph.c:7533:25: warning: incompatible pointer types passing 'float *' to parameter of type 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
    plfill(numofpoints, x, y);
                        ^
/sw/include/plplot/plplot.h:999:27: note: passing argument to parameter 'x' here
c_plfill( PLINT n, PLFLT *x, PLFLT *y );
                          ^
ajgraph.c:7533:28: warning: incompatible pointer types passing 'float *' to parameter of type 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
    plfill(numofpoints, x, y);
                           ^
/sw/include/plplot/plplot.h:999:37: note: passing argument to parameter 'y' here
c_plfill( PLINT n, PLFLT *x, PLFLT *y );
                                    ^
ajgraph.c:8809:26: warning: passing 'char *[2]' to parameter of type 'const char **' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers]
    plparseopts(&plargc, plargv,
                         ^~~~~~
/sw/include/plplot/plplot.h:2119:42: note: passing argument to parameter 'argv' here
c_plparseopts( int *p_argc, const char **argv, PLINT mode );
                                         ^
ajgraph.c:9614:42: warning: incompatible pointer types passing 'float *' to parameter of type 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
                                         (graphdata->x), (graphdata->y), 9);
                                         ^~~~~~~~~~~~~~
ajgraph.c:3057:50: note: passing argument to parameter 'xx' here
void ajGraphicsDrawsetSymbols(ajuint num, PLFLT *xx, PLFLT *yy,
                                                 ^
ajgraph.c:9614:58: warning: incompatible pointer types passing 'float *' to parameter of type 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
                                         (graphdata->x), (graphdata->y), 9);
                                                         ^~~~~~~~~~~~~~
ajgraph.c:3057:61: note: passing argument to parameter 'yy' here
void ajGraphicsDrawsetSymbols(ajuint num, PLFLT *xx, PLFLT *yy,
                                                            ^
ajgraph.c:9683:42: warning: incompatible pointer types passing 'float *' to parameter of type 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
                                         (graphdata->x), (graphdata->y), 9);
                                         ^~~~~~~~~~~~~~
ajgraph.c:3057:50: note: passing argument to parameter 'xx' here
void ajGraphicsDrawsetSymbols(ajuint num, PLFLT *xx, PLFLT *yy,
                                                 ^
ajgraph.c:9683:58: warning: incompatible pointer types passing 'float *' to parameter of type 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
                                         (graphdata->x), (graphdata->y), 9);
                                                         ^~~~~~~~~~~~~~
ajgraph.c:3057:61: note: passing argument to parameter 'yy' here
void ajGraphicsDrawsetSymbols(ajuint num, PLFLT *xx, PLFLT *yy,
                                                            ^
ajgraph.c:9946:22: warning: incompatible pointer types passing 'float *' to parameter of type 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
    plpoin(numofdots,xx1,yy1, symbol);
                     ^~~
/sw/include/plplot/plplot.h:1362:27: note: passing argument to parameter 'x' here
c_plpoin( PLINT n, PLFLT *x, PLFLT *y, PLINT code );
                          ^
ajgraph.c:9946:26: warning: incompatible pointer types passing 'float *' to parameter of type 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
    plpoin(numofdots,xx1,yy1, symbol);
                         ^~~
/sw/include/plplot/plplot.h:1362:37: note: passing argument to parameter 'y' here
c_plpoin( PLINT n, PLFLT *x, PLFLT *y, PLINT code );
                                    ^
8 warnings generated.
mv -f .deps/libajaxg_la-ajhist.Tpo .deps/libajaxg_la-ajhist.Plo
46 warnings generated.
mv -f .deps/libajaxg_la-ajgraph.Tpo .deps/libajaxg_la-ajgraph.Plo
/bin/sh ../../libtool --tag=CC   --mode=link gcc    -O2 -version-info 6:4:0 -no-undefined  -L/sw/lib -o libajaxg.la -rpath /sw/lib/EMBOSS/lib libajaxg_la-ajgraph.lo libajaxg_la-ajhist.lo ../core/libajax.la -L/sw/lib/plplot -lplplotd -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: warning: `/sw/lib/libpcre.la' seems to be moved
libtool: link: warning: `/sw/lib/libmysqlclient.la' seems to be moved
libtool: link: gcc -dynamiclib  -o .libs/libajaxg.6.dylib  .libs/libajaxg_la-ajgraph.o .libs/libajaxg_la-ajhist.o   -L/sw/lib ../core/.libs/libajax.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib -L/sw/lib/plplot -lplplotd /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm  -O2   -pthread -install_name  /sw/lib/EMBOSS/lib/libajaxg.6.dylib -compatibility_version 7 -current_version 7.4 -Wl,-single_module
clang: warning: argument unused during compilation: '-pthread'
libtool: link: (cd ".libs" && rm -f "libajaxg.dylib" && ln -s "libajaxg.6.dylib" "libajaxg.dylib")
libtool: link: ( cd ".libs" && rm -f "libajaxg.la" && ln -s "../libajaxg.la" "libajaxg.la" )
Making all in ensembl
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensalign.lo -MD -MP -MF .deps/libensembl_la-ensalign.Tpo -c -o libensembl_la-ensalign.lo `test -f 'ensalign.c' || echo './'`ensalign.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensanalysis.lo -MD -MP -MF .deps/libensembl_la-ensanalysis.Tpo -c -o libensembl_la-ensanalysis.lo `test -f 'ensanalysis.c' || echo './'`ensanalysis.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensassembly.lo -MD -MP -MF .deps/libensembl_la-ensassembly.Tpo -c -o libensembl_la-ensassembly.lo `test -f 'ensassembly.c' || echo './'`ensassembly.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensassemblyexception.lo -MD -MP -MF .deps/libensembl_la-ensassemblyexception.Tpo -c -o libensembl_la-ensassemblyexception.lo `test -f 'ensassemblyexception.c' || echo './'`ensassemblyexception.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensassemblymapper.lo -MD -MP -MF .deps/libensembl_la-ensassemblymapper.Tpo -c -o libensembl_la-ensassemblymapper.lo `test -f 'ensassemblymapper.c' || echo './'`ensassemblymapper.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensattribute.lo -MD -MP -MF .deps/libensembl_la-ensattribute.Tpo -c -o libensembl_la-ensattribute.lo `test -f 'ensattribute.c' || echo './'`ensattribute.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensbaseadaptor.lo -MD -MP -MF .deps/libensembl_la-ensbaseadaptor.Tpo -c -o libensembl_la-ensbaseadaptor.lo `test -f 'ensbaseadaptor.c' || echo './'`ensbaseadaptor.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-enscache.lo -MD -MP -MF .deps/libensembl_la-enscache.Tpo -c -o libensembl_la-enscache.lo `test -f 'enscache.c' || echo './'`enscache.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensanalysis.lo -MD -MP -MF .deps/libensembl_la-ensanalysis.Tpo -c ensanalysis.c  -fno-common -DPIC -o .libs/libensembl_la-ensanalysis.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensassembly.lo -MD -MP -MF .deps/libensembl_la-ensassembly.Tpo -c ensassembly.c  -fno-common -DPIC -o .libs/libensembl_la-ensassembly.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensalign.lo -MD -MP -MF .deps/libensembl_la-ensalign.Tpo -c ensalign.c  -fno-common -DPIC -o .libs/libensembl_la-ensalign.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensassemblyexception.lo -MD -MP -MF .deps/libensembl_la-ensassemblyexception.Tpo -c ensassemblyexception.c  -fno-common -DPIC -o .libs/libensembl_la-ensassemblyexception.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensassemblymapper.lo -MD -MP -MF .deps/libensembl_la-ensassemblymapper.Tpo -c ensassemblymapper.c  -fno-common -DPIC -o .libs/libensembl_la-ensassemblymapper.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-enscache.lo -MD -MP -MF .deps/libensembl_la-enscache.Tpo -c enscache.c  -fno-common -DPIC -o .libs/libensembl_la-enscache.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensattribute.lo -MD -MP -MF .deps/libensembl_la-ensattribute.Tpo -c ensattribute.c  -fno-common -DPIC -o .libs/libensembl_la-ensattribute.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensbaseadaptor.lo -MD -MP -MF .deps/libensembl_la-ensbaseadaptor.Tpo -c ensbaseadaptor.c  -fno-common -DPIC -o .libs/libensembl_la-ensbaseadaptor.o
mv -f .deps/libensembl_la-ensassembly.Tpo .deps/libensembl_la-ensassembly.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-enscoordsystem.lo -MD -MP -MF .deps/libensembl_la-enscoordsystem.Tpo -c -o libensembl_la-enscoordsystem.lo `test -f 'enscoordsystem.c' || echo './'`enscoordsystem.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-enscoordsystem.lo -MD -MP -MF .deps/libensembl_la-enscoordsystem.Tpo -c enscoordsystem.c  -fno-common -DPIC -o .libs/libensembl_la-enscoordsystem.o
mv -f .deps/libensembl_la-enscache.Tpo .deps/libensembl_la-enscache.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensdatabaseadaptor.lo -MD -MP -MF .deps/libensembl_la-ensdatabaseadaptor.Tpo -c -o libensembl_la-ensdatabaseadaptor.lo `test -f 'ensdatabaseadaptor.c' || echo './'`ensdatabaseadaptor.c
mv -f .deps/libensembl_la-ensassemblyexception.Tpo .deps/libensembl_la-ensassemblyexception.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensdatabaseconnection.lo -MD -MP -MF .deps/libensembl_la-ensdatabaseconnection.Tpo -c -o libensembl_la-ensdatabaseconnection.lo `test -f 'ensdatabaseconnection.c' || echo './'`ensdatabaseconnection.c
mv -f .deps/libensembl_la-ensbaseadaptor.Tpo .deps/libensembl_la-ensbaseadaptor.Plo
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensdatabaseadaptor.lo -MD -MP -MF .deps/libensembl_la-ensdatabaseadaptor.Tpo -c ensdatabaseadaptor.c  -fno-common -DPIC -o .libs/libensembl_la-ensdatabaseadaptor.o
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensdatabaseentry.lo -MD -MP -MF .deps/libensembl_la-ensdatabaseentry.Tpo -c -o libensembl_la-ensdatabaseentry.lo `test -f 'ensdatabaseentry.c' || echo './'`ensdatabaseentry.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensdatabaseconnection.lo -MD -MP -MF .deps/libensembl_la-ensdatabaseconnection.Tpo -c ensdatabaseconnection.c  -fno-common -DPIC -o .libs/libensembl_la-ensdatabaseconnection.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensdatabaseentry.lo -MD -MP -MF .deps/libensembl_la-ensdatabaseentry.Tpo -c ensdatabaseentry.c  -fno-common -DPIC -o .libs/libensembl_la-ensdatabaseentry.o
mv -f .deps/libensembl_la-ensattribute.Tpo .deps/libensembl_la-ensattribute.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensdensity.lo -MD -MP -MF .deps/libensembl_la-ensdensity.Tpo -c -o libensembl_la-ensdensity.lo `test -f 'ensdensity.c' || echo './'`ensdensity.c
mv -f .deps/libensembl_la-ensanalysis.Tpo .deps/libensembl_la-ensanalysis.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensditag.lo -MD -MP -MF .deps/libensembl_la-ensditag.Tpo -c -o libensembl_la-ensditag.lo `test -f 'ensditag.c' || echo './'`ensditag.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensdensity.lo -MD -MP -MF .deps/libensembl_la-ensdensity.Tpo -c ensdensity.c  -fno-common -DPIC -o .libs/libensembl_la-ensdensity.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensditag.lo -MD -MP -MF .deps/libensembl_la-ensditag.Tpo -c ensditag.c  -fno-common -DPIC -o .libs/libensembl_la-ensditag.o
mv -f .deps/libensembl_la-ensalign.Tpo .deps/libensembl_la-ensalign.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensexon.lo -MD -MP -MF .deps/libensembl_la-ensexon.Tpo -c -o libensembl_la-ensexon.lo `test -f 'ensexon.c' || echo './'`ensexon.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensexon.lo -MD -MP -MF .deps/libensembl_la-ensexon.Tpo -c ensexon.c  -fno-common -DPIC -o .libs/libensembl_la-ensexon.o
mv -f .deps/libensembl_la-ensdatabaseadaptor.Tpo .deps/libensembl_la-ensdatabaseadaptor.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensexternaldatabase.lo -MD -MP -MF .deps/libensembl_la-ensexternaldatabase.Tpo -c -o libensembl_la-ensexternaldatabase.lo `test -f 'ensexternaldatabase.c' || echo './'`ensexternaldatabase.c
mv -f .deps/libensembl_la-ensdatabaseconnection.Tpo .deps/libensembl_la-ensdatabaseconnection.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensfeature.lo -MD -MP -MF .deps/libensembl_la-ensfeature.Tpo -c -o libensembl_la-ensfeature.lo `test -f 'ensfeature.c' || echo './'`ensfeature.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensexternaldatabase.lo -MD -MP -MF .deps/libensembl_la-ensexternaldatabase.Tpo -c ensexternaldatabase.c  -fno-common -DPIC -o .libs/libensembl_la-ensexternaldatabase.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensfeature.lo -MD -MP -MF .deps/libensembl_la-ensfeature.Tpo -c ensfeature.c  -fno-common -DPIC -o .libs/libensembl_la-ensfeature.o
mv -f .deps/libensembl_la-ensassemblymapper.Tpo .deps/libensembl_la-ensassemblymapper.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensgene.lo -MD -MP -MF .deps/libensembl_la-ensgene.Tpo -c -o libensembl_la-ensgene.lo `test -f 'ensgene.c' || echo './'`ensgene.c
mv -f .deps/libensembl_la-enscoordsystem.Tpo .deps/libensembl_la-enscoordsystem.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensgvallele.lo -MD -MP -MF .deps/libensembl_la-ensgvallele.Tpo -c -o libensembl_la-ensgvallele.lo `test -f 'ensgvallele.c' || echo './'`ensgvallele.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensgene.lo -MD -MP -MF .deps/libensembl_la-ensgene.Tpo -c ensgene.c  -fno-common -DPIC -o .libs/libensembl_la-ensgene.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensgvallele.lo -MD -MP -MF .deps/libensembl_la-ensgvallele.Tpo -c ensgvallele.c  -fno-common -DPIC -o .libs/libensembl_la-ensgvallele.o
mv -f .deps/libensembl_la-ensditag.Tpo .deps/libensembl_la-ensditag.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensgvattribute.lo -MD -MP -MF .deps/libensembl_la-ensgvattribute.Tpo -c -o libensembl_la-ensgvattribute.lo `test -f 'ensgvattribute.c' || echo './'`ensgvattribute.c
mv -f .deps/libensembl_la-ensdensity.Tpo .deps/libensembl_la-ensdensity.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensgvbaseadaptor.lo -MD -MP -MF .deps/libensembl_la-ensgvbaseadaptor.Tpo -c -o libensembl_la-ensgvbaseadaptor.lo `test -f 'ensgvbaseadaptor.c' || echo './'`ensgvbaseadaptor.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensgvattribute.lo -MD -MP -MF .deps/libensembl_la-ensgvattribute.Tpo -c ensgvattribute.c  -fno-common -DPIC -o .libs/libensembl_la-ensgvattribute.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensgvbaseadaptor.lo -MD -MP -MF .deps/libensembl_la-ensgvbaseadaptor.Tpo -c ensgvbaseadaptor.c  -fno-common -DPIC -o .libs/libensembl_la-ensgvbaseadaptor.o
mv -f .deps/libensembl_la-ensexternaldatabase.Tpo .deps/libensembl_la-ensexternaldatabase.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensgvdatabaseadaptor.lo -MD -MP -MF .deps/libensembl_la-ensgvdatabaseadaptor.Tpo -c -o libensembl_la-ensgvdatabaseadaptor.lo `test -f 'ensgvdatabaseadaptor.c' || echo './'`ensgvdatabaseadaptor.c
mv -f .deps/libensembl_la-ensdatabaseentry.Tpo .deps/libensembl_la-ensdatabaseentry.Plo
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensgvdatabaseadaptor.lo -MD -MP -MF .deps/libensembl_la-ensgvdatabaseadaptor.Tpo -c ensgvdatabaseadaptor.c  -fno-common -DPIC -o .libs/libensembl_la-ensgvdatabaseadaptor.o
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensgvgenotype.lo -MD -MP -MF .deps/libensembl_la-ensgvgenotype.Tpo -c -o libensembl_la-ensgvgenotype.lo `test -f 'ensgvgenotype.c' || echo './'`ensgvgenotype.c
mv -f .deps/libensembl_la-ensexon.Tpo .deps/libensembl_la-ensexon.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensgvindividual.lo -MD -MP -MF .deps/libensembl_la-ensgvindividual.Tpo -c -o libensembl_la-ensgvindividual.lo `test -f 'ensgvindividual.c' || echo './'`ensgvindividual.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensgvgenotype.lo -MD -MP -MF .deps/libensembl_la-ensgvgenotype.Tpo -c ensgvgenotype.c  -fno-common -DPIC -o .libs/libensembl_la-ensgvgenotype.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensgvindividual.lo -MD -MP -MF .deps/libensembl_la-ensgvindividual.Tpo -c ensgvindividual.c  -fno-common -DPIC -o .libs/libensembl_la-ensgvindividual.o
mv -f .deps/libensembl_la-ensgvallele.Tpo .deps/libensembl_la-ensgvallele.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensgvpopulation.lo -MD -MP -MF .deps/libensembl_la-ensgvpopulation.Tpo -c -o libensembl_la-ensgvpopulation.lo `test -f 'ensgvpopulation.c' || echo './'`ensgvpopulation.c
mv -f .deps/libensembl_la-ensgvbaseadaptor.Tpo .deps/libensembl_la-ensgvbaseadaptor.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensgvsample.lo -MD -MP -MF .deps/libensembl_la-ensgvsample.Tpo -c -o libensembl_la-ensgvsample.lo `test -f 'ensgvsample.c' || echo './'`ensgvsample.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensgvpopulation.lo -MD -MP -MF .deps/libensembl_la-ensgvpopulation.Tpo -c ensgvpopulation.c  -fno-common -DPIC -o .libs/libensembl_la-ensgvpopulation.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensgvsample.lo -MD -MP -MF .deps/libensembl_la-ensgvsample.Tpo -c ensgvsample.c  -fno-common -DPIC -o .libs/libensembl_la-ensgvsample.o
mv -f .deps/libensembl_la-ensgvattribute.Tpo .deps/libensembl_la-ensgvattribute.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensgvsource.lo -MD -MP -MF .deps/libensembl_la-ensgvsource.Tpo -c -o libensembl_la-ensgvsource.lo `test -f 'ensgvsource.c' || echo './'`ensgvsource.c
mv -f .deps/libensembl_la-ensgvdatabaseadaptor.Tpo .deps/libensembl_la-ensgvdatabaseadaptor.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensgvsynonym.lo -MD -MP -MF .deps/libensembl_la-ensgvsynonym.Tpo -c -o libensembl_la-ensgvsynonym.lo `test -f 'ensgvsynonym.c' || echo './'`ensgvsynonym.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensgvsource.lo -MD -MP -MF .deps/libensembl_la-ensgvsource.Tpo -c ensgvsource.c  -fno-common -DPIC -o .libs/libensembl_la-ensgvsource.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensgvsynonym.lo -MD -MP -MF .deps/libensembl_la-ensgvsynonym.Tpo -c ensgvsynonym.c  -fno-common -DPIC -o .libs/libensembl_la-ensgvsynonym.o
mv -f .deps/libensembl_la-ensgene.Tpo .deps/libensembl_la-ensgene.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensgvvariation.lo -MD -MP -MF .deps/libensembl_la-ensgvvariation.Tpo -c -o libensembl_la-ensgvvariation.lo `test -f 'ensgvvariation.c' || echo './'`ensgvvariation.c
mv -f .deps/libensembl_la-ensgvgenotype.Tpo .deps/libensembl_la-ensgvgenotype.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensintron.lo -MD -MP -MF .deps/libensembl_la-ensintron.Tpo -c -o libensembl_la-ensintron.lo `test -f 'ensintron.c' || echo './'`ensintron.c
mv -f .deps/libensembl_la-ensgvindividual.Tpo .deps/libensembl_la-ensgvindividual.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-enskaryotype.lo -MD -MP -MF .deps/libensembl_la-enskaryotype.Tpo -c -o libensembl_la-enskaryotype.lo `test -f 'enskaryotype.c' || echo './'`enskaryotype.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensgvvariation.lo -MD -MP -MF .deps/libensembl_la-ensgvvariation.Tpo -c ensgvvariation.c  -fno-common -DPIC -o .libs/libensembl_la-ensgvvariation.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensintron.lo -MD -MP -MF .deps/libensembl_la-ensintron.Tpo -c ensintron.c  -fno-common -DPIC -o .libs/libensembl_la-ensintron.o
mv -f .deps/libensembl_la-ensgvsample.Tpo .deps/libensembl_la-ensgvsample.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensmapper.lo -MD -MP -MF .deps/libensembl_la-ensmapper.Tpo -c -o libensembl_la-ensmapper.lo `test -f 'ensmapper.c' || echo './'`ensmapper.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-enskaryotype.lo -MD -MP -MF .deps/libensembl_la-enskaryotype.Tpo -c enskaryotype.c  -fno-common -DPIC -o .libs/libensembl_la-enskaryotype.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensmapper.lo -MD -MP -MF .deps/libensembl_la-ensmapper.Tpo -c ensmapper.c  -fno-common -DPIC -o .libs/libensembl_la-ensmapper.o
mv -f .deps/libensembl_la-ensfeature.Tpo .deps/libensembl_la-ensfeature.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensmarker.lo -MD -MP -MF .deps/libensembl_la-ensmarker.Tpo -c -o libensembl_la-ensmarker.lo `test -f 'ensmarker.c' || echo './'`ensmarker.c
mv -f .deps/libensembl_la-ensgvsynonym.Tpo .deps/libensembl_la-ensgvsynonym.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensmetacoordinate.lo -MD -MP -MF .deps/libensembl_la-ensmetacoordinate.Tpo -c -o libensembl_la-ensmetacoordinate.lo `test -f 'ensmetacoordinate.c' || echo './'`ensmetacoordinate.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensmarker.lo -MD -MP -MF .deps/libensembl_la-ensmarker.Tpo -c ensmarker.c  -fno-common -DPIC -o .libs/libensembl_la-ensmarker.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensmetacoordinate.lo -MD -MP -MF .deps/libensembl_la-ensmetacoordinate.Tpo -c ensmetacoordinate.c  -fno-common -DPIC -o .libs/libensembl_la-ensmetacoordinate.o
mv -f .deps/libensembl_la-ensgvpopulation.Tpo .deps/libensembl_la-ensgvpopulation.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensmetainformation.lo -MD -MP -MF .deps/libensembl_la-ensmetainformation.Tpo -c -o libensembl_la-ensmetainformation.lo `test -f 'ensmetainformation.c' || echo './'`ensmetainformation.c
mv -f .deps/libensembl_la-ensgvsource.Tpo .deps/libensembl_la-ensgvsource.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensmiscellaneous.lo -MD -MP -MF .deps/libensembl_la-ensmiscellaneous.Tpo -c -o libensembl_la-ensmiscellaneous.lo `test -f 'ensmiscellaneous.c' || echo './'`ensmiscellaneous.c
mv -f .deps/libensembl_la-ensintron.Tpo .deps/libensembl_la-ensintron.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensontology.lo -MD -MP -MF .deps/libensembl_la-ensontology.Tpo -c -o libensembl_la-ensontology.lo `test -f 'ensontology.c' || echo './'`ensontology.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensmetainformation.lo -MD -MP -MF .deps/libensembl_la-ensmetainformation.Tpo -c ensmetainformation.c  -fno-common -DPIC -o .libs/libensembl_la-ensmetainformation.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensmiscellaneous.lo -MD -MP -MF .deps/libensembl_la-ensmiscellaneous.Tpo -c ensmiscellaneous.c  -fno-common -DPIC -o .libs/libensembl_la-ensmiscellaneous.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensontology.lo -MD -MP -MF .deps/libensembl_la-ensontology.Tpo -c ensontology.c  -fno-common -DPIC -o .libs/libensembl_la-ensontology.o
mv -f .deps/libensembl_la-enskaryotype.Tpo .deps/libensembl_la-enskaryotype.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensprediction.lo -MD -MP -MF .deps/libensembl_la-ensprediction.Tpo -c -o libensembl_la-ensprediction.lo `test -f 'ensprediction.c' || echo './'`ensprediction.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensprediction.lo -MD -MP -MF .deps/libensembl_la-ensprediction.Tpo -c ensprediction.c  -fno-common -DPIC -o .libs/libensembl_la-ensprediction.o
mv -f .deps/libensembl_la-ensmetacoordinate.Tpo .deps/libensembl_la-ensmetacoordinate.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensprojectionsegment.lo -MD -MP -MF .deps/libensembl_la-ensprojectionsegment.Tpo -c -o libensembl_la-ensprojectionsegment.lo `test -f 'ensprojectionsegment.c' || echo './'`ensprojectionsegment.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensprojectionsegment.lo -MD -MP -MF .deps/libensembl_la-ensprojectionsegment.Tpo -c ensprojectionsegment.c  -fno-common -DPIC -o .libs/libensembl_la-ensprojectionsegment.o
mv -f .deps/libensembl_la-ensmetainformation.Tpo .deps/libensembl_la-ensmetainformation.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensprotein.lo -MD -MP -MF .deps/libensembl_la-ensprotein.Tpo -c -o libensembl_la-ensprotein.lo `test -f 'ensprotein.c' || echo './'`ensprotein.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensprotein.lo -MD -MP -MF .deps/libensembl_la-ensprotein.Tpo -c ensprotein.c  -fno-common -DPIC -o .libs/libensembl_la-ensprotein.o
mv -f .deps/libensembl_la-ensprojectionsegment.Tpo .deps/libensembl_la-ensprojectionsegment.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensqc.lo -MD -MP -MF .deps/libensembl_la-ensqc.Tpo -c -o libensembl_la-ensqc.lo `test -f 'ensqc.c' || echo './'`ensqc.c
mv -f .deps/libensembl_la-ensmarker.Tpo .deps/libensembl_la-ensmarker.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensqcalignment.lo -MD -MP -MF .deps/libensembl_la-ensqcalignment.Tpo -c -o libensembl_la-ensqcalignment.lo `test -f 'ensqcalignment.c' || echo './'`ensqcalignment.c
mv -f .deps/libensembl_la-ensmiscellaneous.Tpo .deps/libensembl_la-ensmiscellaneous.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensqcdasfeature.lo -MD -MP -MF .deps/libensembl_la-ensqcdasfeature.Tpo -c -o libensembl_la-ensqcdasfeature.lo `test -f 'ensqcdasfeature.c' || echo './'`ensqcdasfeature.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensqc.lo -MD -MP -MF .deps/libensembl_la-ensqc.Tpo -c ensqc.c  -fno-common -DPIC -o .libs/libensembl_la-ensqc.o
mv -f .deps/libensembl_la-ensmapper.Tpo .deps/libensembl_la-ensmapper.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensqcdatabase.lo -MD -MP -MF .deps/libensembl_la-ensqcdatabase.Tpo -c -o libensembl_la-ensqcdatabase.lo `test -f 'ensqcdatabase.c' || echo './'`ensqcdatabase.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensqcalignment.lo -MD -MP -MF .deps/libensembl_la-ensqcalignment.Tpo -c ensqcalignment.c  -fno-common -DPIC -o .libs/libensembl_la-ensqcalignment.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensqcdasfeature.lo -MD -MP -MF .deps/libensembl_la-ensqcdasfeature.Tpo -c ensqcdasfeature.c  -fno-common -DPIC -o .libs/libensembl_la-ensqcdasfeature.o
mv -f .deps/libensembl_la-ensontology.Tpo .deps/libensembl_la-ensontology.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensqcsequence.lo -MD -MP -MF .deps/libensembl_la-ensqcsequence.Tpo -c -o libensembl_la-ensqcsequence.lo `test -f 'ensqcsequence.c' || echo './'`ensqcsequence.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensqcdatabase.lo -MD -MP -MF .deps/libensembl_la-ensqcdatabase.Tpo -c ensqcdatabase.c  -fno-common -DPIC -o .libs/libensembl_la-ensqcdatabase.o
mv -f .deps/libensembl_la-ensprediction.Tpo .deps/libensembl_la-ensprediction.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensqcsubmission.lo -MD -MP -MF .deps/libensembl_la-ensqcsubmission.Tpo -c -o libensembl_la-ensqcsubmission.lo `test -f 'ensqcsubmission.c' || echo './'`ensqcsubmission.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensqcsequence.lo -MD -MP -MF .deps/libensembl_la-ensqcsequence.Tpo -c ensqcsequence.c  -fno-common -DPIC -o .libs/libensembl_la-ensqcsequence.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensqcsubmission.lo -MD -MP -MF .deps/libensembl_la-ensqcsubmission.Tpo -c ensqcsubmission.c  -fno-common -DPIC -o .libs/libensembl_la-ensqcsubmission.o
mv -f .deps/libensembl_la-ensprotein.Tpo .deps/libensembl_la-ensprotein.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensqcvariation.lo -MD -MP -MF .deps/libensembl_la-ensqcvariation.Tpo -c -o libensembl_la-ensqcvariation.lo `test -f 'ensqcvariation.c' || echo './'`ensqcvariation.c
mv -f .deps/libensembl_la-ensqc.Tpo .deps/libensembl_la-ensqc.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensregistry.lo -MD -MP -MF .deps/libensembl_la-ensregistry.Tpo -c -o libensembl_la-ensregistry.lo `test -f 'ensregistry.c' || echo './'`ensregistry.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensqcvariation.lo -MD -MP -MF .deps/libensembl_la-ensqcvariation.Tpo -c ensqcvariation.c  -fno-common -DPIC -o .libs/libensembl_la-ensqcvariation.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensregistry.lo -MD -MP -MF .deps/libensembl_la-ensregistry.Tpo -c ensregistry.c  -fno-common -DPIC -o .libs/libensembl_la-ensregistry.o
mv -f .deps/libensembl_la-ensgvvariation.Tpo .deps/libensembl_la-ensgvvariation.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensrepeat.lo -MD -MP -MF .deps/libensembl_la-ensrepeat.Tpo -c -o libensembl_la-ensrepeat.lo `test -f 'ensrepeat.c' || echo './'`ensrepeat.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensrepeat.lo -MD -MP -MF .deps/libensembl_la-ensrepeat.Tpo -c ensrepeat.c  -fno-common -DPIC -o .libs/libensembl_la-ensrepeat.o
mv -f .deps/libensembl_la-ensqcdasfeature.Tpo .deps/libensembl_la-ensqcdasfeature.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensseqregion.lo -MD -MP -MF .deps/libensembl_la-ensseqregion.Tpo -c -o libensembl_la-ensseqregion.lo `test -f 'ensseqregion.c' || echo './'`ensseqregion.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensseqregion.lo -MD -MP -MF .deps/libensembl_la-ensseqregion.Tpo -c ensseqregion.c  -fno-common -DPIC -o .libs/libensembl_la-ensseqregion.o
mv -f .deps/libensembl_la-ensqcsubmission.Tpo .deps/libensembl_la-ensqcsubmission.Plo
mv -f .deps/libensembl_la-ensqcalignment.Tpo .deps/libensembl_la-ensqcalignment.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-enssequence.lo -MD -MP -MF .deps/libensembl_la-enssequence.Tpo -c -o libensembl_la-enssequence.lo `test -f 'enssequence.c' || echo './'`enssequence.c
mv -f .deps/libensembl_la-ensqcsequence.Tpo .deps/libensembl_la-ensqcsequence.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-enssequenceedit.lo -MD -MP -MF .deps/libensembl_la-enssequenceedit.Tpo -c -o libensembl_la-enssequenceedit.lo `test -f 'enssequenceedit.c' || echo './'`enssequenceedit.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-enssimple.lo -MD -MP -MF .deps/libensembl_la-enssimple.Tpo -c -o libensembl_la-enssimple.lo `test -f 'enssimple.c' || echo './'`enssimple.c
mv -f .deps/libensembl_la-ensqcdatabase.Tpo .deps/libensembl_la-ensqcdatabase.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensslice.lo -MD -MP -MF .deps/libensembl_la-ensslice.Tpo -c -o libensembl_la-ensslice.lo `test -f 'ensslice.c' || echo './'`ensslice.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-enssequence.lo -MD -MP -MF .deps/libensembl_la-enssequence.Tpo -c enssequence.c  -fno-common -DPIC -o .libs/libensembl_la-enssequence.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-enssequenceedit.lo -MD -MP -MF .deps/libensembl_la-enssequenceedit.Tpo -c enssequenceedit.c  -fno-common -DPIC -o .libs/libensembl_la-enssequenceedit.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-enssimple.lo -MD -MP -MF .deps/libensembl_la-enssimple.Tpo -c enssimple.c  -fno-common -DPIC -o .libs/libensembl_la-enssimple.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensslice.lo -MD -MP -MF .deps/libensembl_la-ensslice.Tpo -c ensslice.c  -fno-common -DPIC -o .libs/libensembl_la-ensslice.o
mv -f .deps/libensembl_la-ensqcvariation.Tpo .deps/libensembl_la-ensqcvariation.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-enssoftware.lo -MD -MP -MF .deps/libensembl_la-enssoftware.Tpo -c -o libensembl_la-enssoftware.lo `test -f 'enssoftware.c' || echo './'`enssoftware.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-enssoftware.lo -MD -MP -MF .deps/libensembl_la-enssoftware.Tpo -c enssoftware.c  -fno-common -DPIC -o .libs/libensembl_la-enssoftware.o
mv -f .deps/libensembl_la-ensrepeat.Tpo .deps/libensembl_la-ensrepeat.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensstorable.lo -MD -MP -MF .deps/libensembl_la-ensstorable.Tpo -c -o libensembl_la-ensstorable.lo `test -f 'ensstorable.c' || echo './'`ensstorable.c
mv -f .deps/libensembl_la-enssequenceedit.Tpo .deps/libensembl_la-enssequenceedit.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-enstable.lo -MD -MP -MF .deps/libensembl_la-enstable.Tpo -c -o libensembl_la-enstable.lo `test -f 'enstable.c' || echo './'`enstable.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensstorable.lo -MD -MP -MF .deps/libensembl_la-ensstorable.Tpo -c ensstorable.c  -fno-common -DPIC -o .libs/libensembl_la-ensstorable.o
mv -f .deps/libensembl_la-enssimple.Tpo .deps/libensembl_la-enssimple.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-enstranscript.lo -MD -MP -MF .deps/libensembl_la-enstranscript.Tpo -c -o libensembl_la-enstranscript.lo `test -f 'enstranscript.c' || echo './'`enstranscript.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-enstable.lo -MD -MP -MF .deps/libensembl_la-enstable.Tpo -c enstable.c  -fno-common -DPIC -o .libs/libensembl_la-enstable.o
mv -f .deps/libensembl_la-enssequence.Tpo .deps/libensembl_la-enssequence.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-enstranslation.lo -MD -MP -MF .deps/libensembl_la-enstranslation.Tpo -c -o libensembl_la-enstranslation.lo `test -f 'enstranslation.c' || echo './'`enstranslation.c
mv -f .deps/libensembl_la-enssoftware.Tpo .deps/libensembl_la-enssoftware.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensutility.lo -MD -MP -MF .deps/libensembl_la-ensutility.Tpo -c -o libensembl_la-ensutility.lo `test -f 'ensutility.c' || echo './'`ensutility.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-enstranscript.lo -MD -MP -MF .deps/libensembl_la-enstranscript.Tpo -c enstranscript.c  -fno-common -DPIC -o .libs/libensembl_la-enstranscript.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-enstranslation.lo -MD -MP -MF .deps/libensembl_la-enstranslation.Tpo -c enstranslation.c  -fno-common -DPIC -o .libs/libensembl_la-enstranslation.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensutility.lo -MD -MP -MF .deps/libensembl_la-ensutility.Tpo -c ensutility.c  -fno-common -DPIC -o .libs/libensembl_la-ensutility.o
mv -f .deps/libensembl_la-ensseqregion.Tpo .deps/libensembl_la-ensseqregion.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libensembl_la-ensvariation.lo -MD -MP -MF .deps/libensembl_la-ensvariation.Tpo -c -o libensembl_la-ensvariation.lo `test -f 'ensvariation.c' || echo './'`ensvariation.c
mv -f .deps/libensembl_la-ensstorable.Tpo .deps/libensembl_la-ensstorable.Plo
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libensembl_la-ensvariation.lo -MD -MP -MF .deps/libensembl_la-ensvariation.Tpo -c ensvariation.c  -fno-common -DPIC -o .libs/libensembl_la-ensvariation.o
mv -f .deps/libensembl_la-enstable.Tpo .deps/libensembl_la-enstable.Plo
mv -f .deps/libensembl_la-ensregistry.Tpo .deps/libensembl_la-ensregistry.Plo
mv -f .deps/libensembl_la-ensutility.Tpo .deps/libensembl_la-ensutility.Plo
mv -f .deps/libensembl_la-ensvariation.Tpo .deps/libensembl_la-ensvariation.Plo
mv -f .deps/libensembl_la-ensslice.Tpo .deps/libensembl_la-ensslice.Plo
mv -f .deps/libensembl_la-enstranslation.Tpo .deps/libensembl_la-enstranslation.Plo
mv -f .deps/libensembl_la-enstranscript.Tpo .deps/libensembl_la-enstranscript.Plo
/bin/sh ../../libtool --tag=CC   --mode=link gcc    -O2 -version-info 6:4:0 -no-undefined  -L/sw/lib -o libensembl.la -rpath /sw/lib/EMBOSS/lib libensembl_la-ensalign.lo libensembl_la-ensanalysis.lo libensembl_la-ensassembly.lo libensembl_la-ensassemblyexception.lo libensembl_la-ensassemblymapper.lo libensembl_la-ensattribute.lo libensembl_la-ensbaseadaptor.lo libensembl_la-enscache.lo libensembl_la-enscoordsystem.lo libensembl_la-ensdatabaseadaptor.lo libensembl_la-ensdatabaseconnection.lo libensembl_la-ensdatabaseentry.lo libensembl_la-ensdensity.lo libensembl_la-ensditag.lo libensembl_la-ensexon.lo libensembl_la-ensexternaldatabase.lo libensembl_la-ensfeature.lo libensembl_la-ensgene.lo libensembl_la-ensgvallele.lo libensembl_la-ensgvattribute.lo libensembl_la-ensgvbaseadaptor.lo libensembl_la-ensgvdatabaseadaptor.lo libensembl_la-ensgvgenotype.lo libensembl_la-ensgvindividual.lo libensembl_la-ensgvpopulation.lo libensembl_la-ensgvsample.lo libensembl_la-ensgvsource.lo libensembl_la-ensgvsynonym.lo libensembl_la-ensgvvariation.lo libensembl_la-ensintron.lo libensembl_la-enskaryotype.lo libensembl_la-ensmapper.lo libensembl_la-ensmarker.lo libensembl_la-ensmetacoordinate.lo libensembl_la-ensmetainformation.lo libensembl_la-ensmiscellaneous.lo libensembl_la-ensontology.lo libensembl_la-ensprediction.lo libensembl_la-ensprojectionsegment.lo libensembl_la-ensprotein.lo libensembl_la-ensqc.lo libensembl_la-ensqcalignment.lo libensembl_la-ensqcdasfeature.lo libensembl_la-ensqcdatabase.lo libensembl_la-ensqcsequence.lo libensembl_la-ensqcsubmission.lo libensembl_la-ensqcvariation.lo libensembl_la-ensregistry.lo libensembl_la-ensrepeat.lo libensembl_la-ensseqregion.lo libensembl_la-enssequence.lo libensembl_la-enssequenceedit.lo libensembl_la-enssimple.lo libensembl_la-ensslice.lo libensembl_la-enssoftware.lo libensembl_la-ensstorable.lo libensembl_la-enstable.lo libensembl_la-enstranscript.lo libensembl_la-enstranslation.lo libensembl_la-ensutility.lo libensembl_la-ensvariation.lo ../core/libajax.la -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: warning: `/sw/lib/libpcre.la' seems to be moved
libtool: link: warning: `/sw/lib/libmysqlclient.la' seems to be moved
libtool: link: gcc -dynamiclib  -o .libs/libensembl.6.dylib  .libs/libensembl_la-ensalign.o .libs/libensembl_la-ensanalysis.o .libs/libensembl_la-ensassembly.o .libs/libensembl_la-ensassemblyexception.o .libs/libensembl_la-ensassemblymapper.o .libs/libensembl_la-ensattribute.o .libs/libensembl_la-ensbaseadaptor.o .libs/libensembl_la-enscache.o .libs/libensembl_la-enscoordsystem.o .libs/libensembl_la-ensdatabaseadaptor.o .libs/libensembl_la-ensdatabaseconnection.o .libs/libensembl_la-ensdatabaseentry.o .libs/libensembl_la-ensdensity.o .libs/libensembl_la-ensditag.o .libs/libensembl_la-ensexon.o .libs/libensembl_la-ensexternaldatabase.o .libs/libensembl_la-ensfeature.o .libs/libensembl_la-ensgene.o .libs/libensembl_la-ensgvallele.o .libs/libensembl_la-ensgvattribute.o .libs/libensembl_la-ensgvbaseadaptor.o .libs/libensembl_la-ensgvdatabaseadaptor.o .libs/libensembl_la-ensgvgenotype.o .libs/libensembl_la-ensgvindividual.o .libs/libensembl_la-ensgvpopulation.o .libs/libensembl_la-ensgvsample.o .libs/libensembl_la-ensgvsource.o .libs/libensembl_la-ensgvsynonym.o .libs/libensembl_la-ensgvvariation.o .libs/libensembl_la-ensintron.o .libs/libensembl_la-enskaryotype.o .libs/libensembl_la-ensmapper.o .libs/libensembl_la-ensmarker.o .libs/libensembl_la-ensmetacoordinate.o .libs/libensembl_la-ensmetainformation.o .libs/libensembl_la-ensmiscellaneous.o .libs/libensembl_la-ensontology.o .libs/libensembl_la-ensprediction.o .libs/libensembl_la-ensprojectionsegment.o .libs/libensembl_la-ensprotein.o .libs/libensembl_la-ensqc.o .libs/libensembl_la-ensqcalignment.o .libs/libensembl_la-ensqcdasfeature.o .libs/libensembl_la-ensqcdatabase.o .libs/libensembl_la-ensqcsequence.o .libs/libensembl_la-ensqcsubmission.o .libs/libensembl_la-ensqcvariation.o .libs/libensembl_la-ensregistry.o .libs/libensembl_la-ensrepeat.o .libs/libensembl_la-ensseqregion.o .libs/libensembl_la-enssequence.o .libs/libensembl_la-enssequenceedit.o .libs/libensembl_la-enssimple.o .libs/libensembl_la-ensslice.o .libs/libensembl_la-enssoftware.o .libs/libensembl_la-ensstorable.o .libs/libensembl_la-enstable.o .libs/libensembl_la-enstranscript.o .libs/libensembl_la-enstranslation.o .libs/libensembl_la-ensutility.o .libs/libensembl_la-ensvariation.o   -L/sw/lib ../core/.libs/libajax.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm  -O2   -pthread -install_name  /sw/lib/EMBOSS/lib/libensembl.6.dylib -compatibility_version 7 -current_version 7.4 -Wl,-single_module
clang: warning: argument unused during compilation: '-pthread'
libtool: link: (cd ".libs" && rm -f "libensembl.dylib" && ln -s "libensembl.6.dylib" "libensembl.dylib")
libtool: link: ( cd ".libs" && rm -f "libensembl.la" && ln -s "../libensembl.la" "libensembl.la" )
Making all in ajaxdb
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core  -I../../ajax/ensembl   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajaxdb_la-ajassemdb.lo -MD -MP -MF .deps/libajaxdb_la-ajassemdb.Tpo -c -o libajaxdb_la-ajassemdb.lo `test -f 'ajassemdb.c' || echo './'`ajassemdb.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core  -I../../ajax/ensembl   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajaxdb_la-ajdas.lo -MD -MP -MF .deps/libajaxdb_la-ajdas.Tpo -c -o libajaxdb_la-ajdas.lo `test -f 'ajdas.c' || echo './'`ajdas.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core  -I../../ajax/ensembl   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajaxdb_la-ajfeatdb.lo -MD -MP -MF .deps/libajaxdb_la-ajfeatdb.Tpo -c -o libajaxdb_la-ajfeatdb.lo `test -f 'ajfeatdb.c' || echo './'`ajfeatdb.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core  -I../../ajax/ensembl   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajaxdb_la-ajmart.lo -MD -MP -MF .deps/libajaxdb_la-ajmart.Tpo -c -o libajaxdb_la-ajmart.lo `test -f 'ajmart.c' || echo './'`ajmart.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core  -I../../ajax/ensembl   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajaxdb_la-ajobodb.lo -MD -MP -MF .deps/libajaxdb_la-ajobodb.Tpo -c -o libajaxdb_la-ajobodb.lo `test -f 'ajobodb.c' || echo './'`ajobodb.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core  -I../../ajax/ensembl   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajaxdb_la-ajrefseqdb.lo -MD -MP -MF .deps/libajaxdb_la-ajrefseqdb.Tpo -c -o libajaxdb_la-ajrefseqdb.lo `test -f 'ajrefseqdb.c' || echo './'`ajrefseqdb.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core  -I../../ajax/ensembl   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajaxdb_la-ajresourcedb.lo -MD -MP -MF .deps/libajaxdb_la-ajresourcedb.Tpo -c -o libajaxdb_la-ajresourcedb.lo `test -f 'ajresourcedb.c' || echo './'`ajresourcedb.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core  -I../../ajax/ensembl   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajaxdb_la-ajseqdb.lo -MD -MP -MF .deps/libajaxdb_la-ajseqdb.Tpo -c -o libajaxdb_la-ajseqdb.lo `test -f 'ajseqdb.c' || echo './'`ajseqdb.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libajaxdb_la-ajdas.lo -MD -MP -MF .deps/libajaxdb_la-ajdas.Tpo -c ajdas.c  -fno-common -DPIC -o .libs/libajaxdb_la-ajdas.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libajaxdb_la-ajassemdb.lo -MD -MP -MF .deps/libajaxdb_la-ajassemdb.Tpo -c ajassemdb.c  -fno-common -DPIC -o .libs/libajaxdb_la-ajassemdb.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libajaxdb_la-ajfeatdb.lo -MD -MP -MF .deps/libajaxdb_la-ajfeatdb.Tpo -c ajfeatdb.c  -fno-common -DPIC -o .libs/libajaxdb_la-ajfeatdb.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libajaxdb_la-ajobodb.lo -MD -MP -MF .deps/libajaxdb_la-ajobodb.Tpo -c ajobodb.c  -fno-common -DPIC -o .libs/libajaxdb_la-ajobodb.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libajaxdb_la-ajrefseqdb.lo -MD -MP -MF .deps/libajaxdb_la-ajrefseqdb.Tpo -c ajrefseqdb.c  -fno-common -DPIC -o .libs/libajaxdb_la-ajrefseqdb.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libajaxdb_la-ajresourcedb.lo -MD -MP -MF .deps/libajaxdb_la-ajresourcedb.Tpo -c ajresourcedb.c  -fno-common -DPIC -o .libs/libajaxdb_la-ajresourcedb.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libajaxdb_la-ajmart.lo -MD -MP -MF .deps/libajaxdb_la-ajmart.Tpo -c ajmart.c  -fno-common -DPIC -o .libs/libajaxdb_la-ajmart.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libajaxdb_la-ajseqdb.lo -MD -MP -MF .deps/libajaxdb_la-ajseqdb.Tpo -c ajseqdb.c  -fno-common -DPIC -o .libs/libajaxdb_la-ajseqdb.o
mv -f .deps/libajaxdb_la-ajrefseqdb.Tpo .deps/libajaxdb_la-ajrefseqdb.Plo
mv -f .deps/libajaxdb_la-ajresourcedb.Tpo .deps/libajaxdb_la-ajresourcedb.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core  -I../../ajax/ensembl   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajaxdb_la-ajsoap.lo -MD -MP -MF .deps/libajaxdb_la-ajsoap.Tpo -c -o libajaxdb_la-ajsoap.lo `test -f 'ajsoap.c' || echo './'`ajsoap.c
mv -f .deps/libajaxdb_la-ajobodb.Tpo .deps/libajaxdb_la-ajobodb.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core  -I../../ajax/ensembl   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajaxdb_la-ajtaxdb.lo -MD -MP -MF .deps/libajaxdb_la-ajtaxdb.Tpo -c -o libajaxdb_la-ajtaxdb.lo `test -f 'ajtaxdb.c' || echo './'`ajtaxdb.c
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core  -I../../ajax/ensembl   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajaxdb_la-ajtextdb.lo -MD -MP -MF .deps/libajaxdb_la-ajtextdb.Tpo -c -o libajaxdb_la-ajtextdb.lo `test -f 'ajtextdb.c' || echo './'`ajtextdb.c
mv -f .deps/libajaxdb_la-ajassemdb.Tpo .deps/libajaxdb_la-ajassemdb.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core  -I../../ajax/ensembl   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajaxdb_la-ajurldb.lo -MD -MP -MF .deps/libajaxdb_la-ajurldb.Tpo -c -o libajaxdb_la-ajurldb.lo `test -f 'ajurldb.c' || echo './'`ajurldb.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libajaxdb_la-ajtaxdb.lo -MD -MP -MF .deps/libajaxdb_la-ajtaxdb.Tpo -c ajtaxdb.c  -fno-common -DPIC -o .libs/libajaxdb_la-ajtaxdb.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libajaxdb_la-ajsoap.lo -MD -MP -MF .deps/libajaxdb_la-ajsoap.Tpo -c ajsoap.c  -fno-common -DPIC -o .libs/libajaxdb_la-ajsoap.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libajaxdb_la-ajtextdb.lo -MD -MP -MF .deps/libajaxdb_la-ajtextdb.Tpo -c ajtextdb.c  -fno-common -DPIC -o .libs/libajaxdb_la-ajtextdb.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libajaxdb_la-ajurldb.lo -MD -MP -MF .deps/libajaxdb_la-ajurldb.Tpo -c ajurldb.c  -fno-common -DPIC -o .libs/libajaxdb_la-ajurldb.o
mv -f .deps/libajaxdb_la-ajsoap.Tpo .deps/libajaxdb_la-ajsoap.Plo
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core  -I../../ajax/ensembl   -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libajaxdb_la-ajvardb.lo -MD -MP -MF .deps/libajaxdb_la-ajvardb.Tpo -c -o libajaxdb_la-ajvardb.lo `test -f 'ajvardb.c' || echo './'`ajvardb.c
mv -f .deps/libajaxdb_la-ajdas.Tpo .deps/libajaxdb_la-ajdas.Plo
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libajaxdb_la-ajvardb.lo -MD -MP -MF .deps/libajaxdb_la-ajvardb.Tpo -c ajvardb.c  -fno-common -DPIC -o .libs/libajaxdb_la-ajvardb.o
mv -f .deps/libajaxdb_la-ajurldb.Tpo .deps/libajaxdb_la-ajurldb.Plo
ajtextdb.c:3846:20: warning: implicit declaration of function 'isdigit' is invalid in C99 [-Wimplicit-function-declaration]
                if(isdigit((int)*cp))
                   ^
mv -f .deps/libajaxdb_la-ajvardb.Tpo .deps/libajaxdb_la-ajvardb.Plo
mv -f .deps/libajaxdb_la-ajtaxdb.Tpo .deps/libajaxdb_la-ajtaxdb.Plo
mv -f .deps/libajaxdb_la-ajmart.Tpo .deps/libajaxdb_la-ajmart.Plo
mv -f .deps/libajaxdb_la-ajfeatdb.Tpo .deps/libajaxdb_la-ajfeatdb.Plo
mv -f .deps/libajaxdb_la-ajseqdb.Tpo .deps/libajaxdb_la-ajseqdb.Plo
1 warning generated.
mv -f .deps/libajaxdb_la-ajtextdb.Tpo .deps/libajaxdb_la-ajtextdb.Plo
/bin/sh ../../libtool --tag=CC   --mode=link gcc    -O2 -version-info 6:4:0 -no-undefined   -no-undefined -L/sw/lib -o libajaxdb.la -rpath /sw/lib/EMBOSS/lib libajaxdb_la-ajassemdb.lo libajaxdb_la-ajdas.lo libajaxdb_la-ajfeatdb.lo libajaxdb_la-ajmart.lo libajaxdb_la-ajobodb.lo libajaxdb_la-ajrefseqdb.lo libajaxdb_la-ajresourcedb.lo libajaxdb_la-ajseqdb.lo libajaxdb_la-ajsoap.lo libajaxdb_la-ajtaxdb.lo libajaxdb_la-ajtextdb.lo libajaxdb_la-ajurldb.lo libajaxdb_la-ajvardb.lo ../core/libajax.la ../ensembl/libensembl.la -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: warning: `/sw/lib/libpcre.la' seems to be moved
libtool: link: warning: `/sw/lib/libmysqlclient.la' seems to be moved
libtool: link: warning: `/sw/lib/libpcre.la' seems to be moved
libtool: link: warning: `/sw/lib/libmysqlclient.la' seems to be moved
libtool: link: warning: `/sw/lib/libpcre.la' seems to be moved
libtool: link: warning: `/sw/lib/libmysqlclient.la' seems to be moved
libtool: link: gcc -dynamiclib  -o .libs/libajaxdb.6.dylib  .libs/libajaxdb_la-ajassemdb.o .libs/libajaxdb_la-ajdas.o .libs/libajaxdb_la-ajfeatdb.o .libs/libajaxdb_la-ajmart.o .libs/libajaxdb_la-ajobodb.o .libs/libajaxdb_la-ajrefseqdb.o .libs/libajaxdb_la-ajresourcedb.o .libs/libajaxdb_la-ajseqdb.o .libs/libajaxdb_la-ajsoap.o .libs/libajaxdb_la-ajtaxdb.o .libs/libajaxdb_la-ajtextdb.o .libs/libajaxdb_la-ajurldb.o .libs/libajaxdb_la-ajvardb.o   -L/sw/lib ../core/.libs/libajax.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib ../ensembl/.libs/libensembl.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm  -O2 -Wl,-dylib_file -Wl,/sw/lib/EMBOSS/lib/libajax.6.dylib:/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib   -pthread -install_name  /sw/lib/EMBOSS/lib/libajaxdb.6.dylib -compatibility_version 7 -current_version 7.4 -Wl,-single_module
clang: warning: argument unused during compilation: '-pthread'
libtool: link: (cd ".libs" && rm -f "libajaxdb.dylib" && ln -s "libajaxdb.6.dylib" "libajaxdb.dylib")
libtool: link: ( cd ".libs" && rm -f "libajaxdb.la" && ln -s "../libajaxdb.la" "libajaxdb.la" )
Making all in acd
/bin/sh ../../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../ajax/core  -I../../ajax/ajaxdb -I../../ajax/ensembl -I../../ajax/graphics  -I/sw/include/plplot  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT libacd_la-ajacd.lo -MD -MP -MF .deps/libacd_la-ajacd.Tpo -c -o libacd_la-ajacd.lo `test -f 'ajacd.c' || echo './'`ajacd.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ajaxdb -I../../ajax/ensembl -I../../ajax/graphics -I/sw/include/plplot -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF -O2 -MT libacd_la-ajacd.lo -MD -MP -MF .deps/libacd_la-ajacd.Tpo -c ajacd.c  -fno-common -DPIC -o .libs/libacd_la-ajacd.o
ajacd.c:26083:8: warning: implicit declaration of function 'isdigit' is invalid in C99 [-Wimplicit-function-declaration]
    if(isdigit((ajint)*--cq))
       ^
ajacd.c:32396:6: warning: implicit declaration of function 'isupper' is invalid in C99 [-Wimplicit-function-declaration]
        if(!isupper((int)ajStrGetCharFirst(thys->AttrStr[i])))
            ^
ajacd.c:32398:10: warning: implicit declaration of function 'islower' is invalid in C99 [-Wimplicit-function-declaration]
            if (islower((int)ajStrGetCharFirst(thys->AttrStr[i])))
                ^
3 warnings generated.
mv -f .deps/libacd_la-ajacd.Tpo .deps/libacd_la-ajacd.Plo
/bin/sh ../../libtool --tag=CC   --mode=link gcc    -O2 -version-info 6:4:0 -no-undefined  -L/sw/lib -o libacd.la -rpath /sw/lib/EMBOSS/lib libacd_la-ajacd.lo ../core/libajax.la ../graphics/libajaxg.la ../ajaxdb/libajaxdb.la -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: warning: `/sw/lib/libpcre.la' seems to be moved
libtool: link: warning: `/sw/lib/libmysqlclient.la' seems to be moved
libtool: link: warning: `/sw/lib/libpcre.la' seems to be moved
libtool: link: warning: `/sw/lib/libmysqlclient.la' seems to be moved
libtool: link: warning: `/sw/lib/libpcre.la' seems to be moved
libtool: link: warning: `/sw/lib/libmysqlclient.la' seems to be moved
libtool: link: warning: `/sw/lib/libpcre.la' seems to be moved
libtool: link: warning: `/sw/lib/libmysqlclient.la' seems to be moved
libtool: link: warning: `/sw/lib/libpcre.la' seems to be moved
libtool: link: warning: `/sw/lib/libmysqlclient.la' seems to be moved
libtool: link: gcc -dynamiclib  -o .libs/libacd.6.dylib  .libs/libacd_la-ajacd.o   -L/sw/lib ../core/.libs/libajax.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib ../graphics/.libs/libajaxg.dylib -L/sw/lib/plplot -lplplotd ../ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm  -O2 -Wl,-dylib_file -Wl,/sw/lib/EMBOSS/lib/libajax.6.dylib:/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -Wl,-dylib_file -Wl,/sw/lib/EMBOSS/lib/libensembl.6.dylib:/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib -Wl,-dylib_file -Wl,/sw/lib/EMBOSS/lib/libajax.6.dylib:/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -Wl,-dylib_file -Wl,/sw/lib/EMBOSS/lib/libajax.6.dylib:/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib   -pthread -install_name  /sw/lib/EMBOSS/lib/libacd.6.dylib -compatibility_version 7 -current_version 7.4 -Wl,-single_module
clang: warning: argument unused during compilation: '-pthread'
libtool: link: (cd ".libs" && rm -f "libacd.dylib" && ln -s "libacd.6.dylib" "libacd.dylib")
libtool: link: ( cd ".libs" && rm -f "libacd.la" && ln -s "../libacd.la" "libacd.la" )
make[2]: Nothing to be done for `all-am'.
Making all in nucleus
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embaln.lo -MD -MP -MF .deps/libnucleus_la-embaln.Tpo -c -o libnucleus_la-embaln.lo `test -f 'embaln.c' || echo './'`embaln.c
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embcom.lo -MD -MP -MF .deps/libnucleus_la-embcom.Tpo -c -o libnucleus_la-embcom.lo `test -f 'embcom.c' || echo './'`embcom.c
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embcons.lo -MD -MP -MF .deps/libnucleus_la-embcons.Tpo -c -o libnucleus_la-embcons.lo `test -f 'embcons.c' || echo './'`embcons.c
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embdata.lo -MD -MP -MF .deps/libnucleus_la-embdata.Tpo -c -o libnucleus_la-embdata.lo `test -f 'embdata.c' || echo './'`embdata.c
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embdbi.lo -MD -MP -MF .deps/libnucleus_la-embdbi.Tpo -c -o libnucleus_la-embdbi.lo `test -f 'embdbi.c' || echo './'`embdbi.c
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embdmx.lo -MD -MP -MF .deps/libnucleus_la-embdmx.Tpo -c -o libnucleus_la-embdmx.lo `test -f 'embdmx.c' || echo './'`embdmx.c
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embdomain.lo -MD -MP -MF .deps/libnucleus_la-embdomain.Tpo -c -o libnucleus_la-embdomain.lo `test -f 'embdomain.c' || echo './'`embdomain.c
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embest.lo -MD -MP -MF .deps/libnucleus_la-embest.Tpo -c -o libnucleus_la-embest.lo `test -f 'embest.c' || echo './'`embest.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embaln.lo -MD -MP -MF .deps/libnucleus_la-embaln.Tpo -c embaln.c  -fno-common -DPIC -o .libs/libnucleus_la-embaln.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embcom.lo -MD -MP -MF .deps/libnucleus_la-embcom.Tpo -c embcom.c  -fno-common -DPIC -o .libs/libnucleus_la-embcom.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embdmx.lo -MD -MP -MF .deps/libnucleus_la-embdmx.Tpo -c embdmx.c  -fno-common -DPIC -o .libs/libnucleus_la-embdmx.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embdbi.lo -MD -MP -MF .deps/libnucleus_la-embdbi.Tpo -c embdbi.c  -fno-common -DPIC -o .libs/libnucleus_la-embdbi.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embdata.lo -MD -MP -MF .deps/libnucleus_la-embdata.Tpo -c embdata.c  -fno-common -DPIC -o .libs/libnucleus_la-embdata.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embcons.lo -MD -MP -MF .deps/libnucleus_la-embcons.Tpo -c embcons.c  -fno-common -DPIC -o .libs/libnucleus_la-embcons.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embdomain.lo -MD -MP -MF .deps/libnucleus_la-embdomain.Tpo -c embdomain.c  -fno-common -DPIC -o .libs/libnucleus_la-embdomain.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embest.lo -MD -MP -MF .deps/libnucleus_la-embest.Tpo -c embest.c  -fno-common -DPIC -o .libs/libnucleus_la-embest.o
mv -f .deps/libnucleus_la-embdata.Tpo .deps/libnucleus_la-embdata.Plo
mv -f .deps/libnucleus_la-embdomain.Tpo .deps/libnucleus_la-embdomain.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embexit.lo -MD -MP -MF .deps/libnucleus_la-embexit.Tpo -c -o libnucleus_la-embexit.lo `test -f 'embexit.c' || echo './'`embexit.c
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embgroup.lo -MD -MP -MF .deps/libnucleus_la-embgroup.Tpo -c -o libnucleus_la-embgroup.lo `test -f 'embgroup.c' || echo './'`embgroup.c
embdmx.c:2245:31: warning: implicit conversion from enumeration type 'EmbESignatureType' (aka 'enum EmbOSignatureType') to different enumeration type 'AjEDomainType' (aka 'enum AjODomainType') [-Wenum-conversion]
            scophit->Type = hitlist->Type;
                          ~ ~~~~~~~~~^~~~
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embexit.lo -MD -MP -MF .deps/libnucleus_la-embexit.Tpo -c embexit.c  -fno-common -DPIC -o .libs/libnucleus_la-embexit.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embgroup.lo -MD -MP -MF .deps/libnucleus_la-embgroup.Tpo -c embgroup.c  -fno-common -DPIC -o .libs/libnucleus_la-embgroup.o
mv -f .deps/libnucleus_la-embcons.Tpo .deps/libnucleus_la-embcons.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embiep.lo -MD -MP -MF .deps/libnucleus_la-embiep.Tpo -c -o libnucleus_la-embiep.lo `test -f 'embiep.c' || echo './'`embiep.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embiep.lo -MD -MP -MF .deps/libnucleus_la-embiep.Tpo -c embiep.c  -fno-common -DPIC -o .libs/libnucleus_la-embiep.o
embgroup.c:679:10: warning: implicit declaration of function 'tolower' is invalid in C99 [-Wimplicit-function-declaration]
                    if(tolower((int)(ajStrGetPtr(tmpvalue))[0]) == 'n')
                       ^
mv -f .deps/libnucleus_la-embexit.Tpo .deps/libnucleus_la-embexit.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embindex.lo -MD -MP -MF .deps/libnucleus_la-embindex.Tpo -c -o libnucleus_la-embindex.lo `test -f 'embindex.c' || echo './'`embindex.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embindex.lo -MD -MP -MF .deps/libnucleus_la-embindex.Tpo -c embindex.c  -fno-common -DPIC -o .libs/libnucleus_la-embindex.o
mv -f .deps/libnucleus_la-embdbi.Tpo .deps/libnucleus_la-embdbi.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embinit.lo -MD -MP -MF .deps/libnucleus_la-embinit.Tpo -c -o libnucleus_la-embinit.lo `test -f 'embinit.c' || echo './'`embinit.c
mv -f .deps/libnucleus_la-embiep.Tpo .deps/libnucleus_la-embiep.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embmat.lo -MD -MP -MF .deps/libnucleus_la-embmat.Tpo -c -o libnucleus_la-embmat.lo `test -f 'embmat.c' || echo './'`embmat.c
1 warning generated.
mv -f .deps/libnucleus_la-embdmx.Tpo .deps/libnucleus_la-embdmx.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embmisc.lo -MD -MP -MF .deps/libnucleus_la-embmisc.Tpo -c -o libnucleus_la-embmisc.lo `test -f 'embmisc.c' || echo './'`embmisc.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embinit.lo -MD -MP -MF .deps/libnucleus_la-embinit.Tpo -c embinit.c  -fno-common -DPIC -o .libs/libnucleus_la-embinit.o
mv -f .deps/libnucleus_la-embcom.Tpo .deps/libnucleus_la-embcom.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embmol.lo -MD -MP -MF .deps/libnucleus_la-embmol.Tpo -c -o libnucleus_la-embmol.lo `test -f 'embmol.c' || echo './'`embmol.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embmat.lo -MD -MP -MF .deps/libnucleus_la-embmat.Tpo -c embmat.c  -fno-common -DPIC -o .libs/libnucleus_la-embmat.o
embindex.c:821:8: warning: implicitly declaring library function 'strchr' with type 'char *(const char *, int)'
        if((p=strchr(MAJSTRGETPTR(embindexToken),(int)'-')))
              ^
embindex.c:821:8: note: please include the header <string.h> or explicitly provide a declaration for 'strchr'
embindex.c:825:12: warning: implicit declaration of function 'isdigit' is invalid in C99 [-Wimplicit-function-declaration]
            while(isdigit((int)*(--q)));
                  ^
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embmisc.lo -MD -MP -MF .deps/libnucleus_la-embmisc.Tpo -c embmisc.c  -fno-common -DPIC -o .libs/libnucleus_la-embmisc.o
embindex.c:2496:23: warning: implicitly declaring library function 'strerror' with type 'char *(int)'
               errno, strerror(errno));
                      ^
embindex.c:2496:23: note: please include the header <string.h> or explicitly provide a declaration for 'strerror'
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embmol.lo -MD -MP -MF .deps/libnucleus_la-embmol.Tpo -c embmol.c  -fno-common -DPIC -o .libs/libnucleus_la-embmol.o
mv -f .deps/libnucleus_la-embmisc.Tpo .deps/libnucleus_la-embmisc.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embnmer.lo -MD -MP -MF .deps/libnucleus_la-embnmer.Tpo -c -o libnucleus_la-embnmer.lo `test -f 'embnmer.c' || echo './'`embnmer.c
mv -f .deps/libnucleus_la-embest.Tpo .deps/libnucleus_la-embest.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embpat.lo -MD -MP -MF .deps/libnucleus_la-embpat.Tpo -c -o libnucleus_la-embpat.lo `test -f 'embpat.c' || echo './'`embpat.c
mv -f .deps/libnucleus_la-embinit.Tpo .deps/libnucleus_la-embinit.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embpatlist.lo -MD -MP -MF .deps/libnucleus_la-embpatlist.Tpo -c -o libnucleus_la-embpatlist.lo `test -f 'embpatlist.c' || echo './'`embpatlist.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embnmer.lo -MD -MP -MF .deps/libnucleus_la-embnmer.Tpo -c embnmer.c  -fno-common -DPIC -o .libs/libnucleus_la-embnmer.o
mv -f .deps/libnucleus_la-embmol.Tpo .deps/libnucleus_la-embmol.Plo
mv -f .deps/libnucleus_la-embmat.Tpo .deps/libnucleus_la-embmat.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embprop.lo -MD -MP -MF .deps/libnucleus_la-embprop.Tpo -c -o libnucleus_la-embprop.lo `test -f 'embprop.c' || echo './'`embprop.c
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embpdb.lo -MD -MP -MF .deps/libnucleus_la-embpdb.Tpo -c -o libnucleus_la-embpdb.lo `test -f 'embpdb.c' || echo './'`embpdb.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embpat.lo -MD -MP -MF .deps/libnucleus_la-embpat.Tpo -c embpat.c  -fno-common -DPIC -o .libs/libnucleus_la-embpat.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embpatlist.lo -MD -MP -MF .deps/libnucleus_la-embpatlist.Tpo -c embpatlist.c  -fno-common -DPIC -o .libs/libnucleus_la-embpatlist.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embprop.lo -MD -MP -MF .deps/libnucleus_la-embprop.Tpo -c embprop.c  -fno-common -DPIC -o .libs/libnucleus_la-embprop.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embpdb.lo -MD -MP -MF .deps/libnucleus_la-embpdb.Tpo -c embpdb.c  -fno-common -DPIC -o .libs/libnucleus_la-embpdb.o
1 warning generated.
mv -f .deps/libnucleus_la-embnmer.Tpo .deps/libnucleus_la-embnmer.Plo
mv -f .deps/libnucleus_la-embgroup.Tpo .deps/libnucleus_la-embgroup.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embread.lo -MD -MP -MF .deps/libnucleus_la-embread.Tpo -c -o libnucleus_la-embread.lo `test -f 'embread.c' || echo './'`embread.c
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embsig.lo -MD -MP -MF .deps/libnucleus_la-embsig.Tpo -c -o libnucleus_la-embsig.lo `test -f 'embsig.c' || echo './'`embsig.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embread.lo -MD -MP -MF .deps/libnucleus_la-embread.Tpo -c embread.c  -fno-common -DPIC -o .libs/libnucleus_la-embread.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embsig.lo -MD -MP -MF .deps/libnucleus_la-embsig.Tpo -c embsig.c  -fno-common -DPIC -o .libs/libnucleus_la-embsig.o
3 warnings generated.
mv -f .deps/libnucleus_la-embaln.Tpo .deps/libnucleus_la-embaln.Plo
mv -f .deps/libnucleus_la-embpatlist.Tpo .deps/libnucleus_la-embpatlist.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embshow.lo -MD -MP -MF .deps/libnucleus_la-embshow.Tpo -c -o libnucleus_la-embshow.lo `test -f 'embshow.c' || echo './'`embshow.c
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I../ajax/core   -I/sw/include/plplot  -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF     -O2 -MT libnucleus_la-embword.lo -MD -MP -MF .deps/libnucleus_la-embword.Tpo -c -o libnucleus_la-embword.lo `test -f 'embword.c' || echo './'`embword.c
mv -f .deps/libnucleus_la-embindex.Tpo .deps/libnucleus_la-embindex.Plo
mv -f .deps/libnucleus_la-embpdb.Tpo .deps/libnucleus_la-embpdb.Plo
mv -f .deps/libnucleus_la-embread.Tpo .deps/libnucleus_la-embread.Plo
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embword.lo -MD -MP -MF .deps/libnucleus_la-embword.Tpo -c embword.c  -fno-common -DPIC -o .libs/libnucleus_la-embword.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../ajax/core -I/sw/include/plplot -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/usr/X11/include -I/sw/include -DAJ_MACOSXLF -O2 -MT libnucleus_la-embshow.lo -MD -MP -MF .deps/libnucleus_la-embshow.Tpo -c embshow.c  -fno-common -DPIC -o .libs/libnucleus_la-embshow.o
embword.c:139:12: warning: implicit declaration of function 'toupper' is invalid in C99 [-Wimplicit-function-declaration]
        hashval = toupper((ajint)*s) + 31 *hashval;
                  ^
embword.c:1872:33: warning: implicitly declaring library function 'memcpy' with type 'void *(void *, const void *, unsigned long)'
                                memcpy(tmp, text+i-plen, plen);
                                ^
embword.c:1872:33: note: please include the header <string.h> or explicitly provide a declaration for 'memcpy'
mv -f .deps/libnucleus_la-embprop.Tpo .deps/libnucleus_la-embprop.Plo
2 warnings generated.
mv -f .deps/libnucleus_la-embword.Tpo .deps/libnucleus_la-embword.Plo
mv -f .deps/libnucleus_la-embsig.Tpo .deps/libnucleus_la-embsig.Plo
mv -f .deps/libnucleus_la-embshow.Tpo .deps/libnucleus_la-embshow.Plo
mv -f .deps/libnucleus_la-embpat.Tpo .deps/libnucleus_la-embpat.Plo
/bin/sh ../libtool --tag=CC   --mode=link gcc     -O2 -version-info 6:4:0 -no-undefined  -L/sw/lib -o libnucleus.la -rpath /sw/lib/EMBOSS/lib libnucleus_la-embaln.lo libnucleus_la-embcom.lo libnucleus_la-embcons.lo libnucleus_la-embdata.lo libnucleus_la-embdbi.lo libnucleus_la-embdmx.lo libnucleus_la-embdomain.lo libnucleus_la-embest.lo libnucleus_la-embexit.lo libnucleus_la-embgroup.lo libnucleus_la-embiep.lo libnucleus_la-embindex.lo libnucleus_la-embinit.lo libnucleus_la-embmat.lo libnucleus_la-embmisc.lo libnucleus_la-embmol.lo libnucleus_la-embnmer.lo libnucleus_la-embpat.lo libnucleus_la-embpatlist.lo libnucleus_la-embprop.lo libnucleus_la-embpdb.lo libnucleus_la-embread.lo libnucleus_la-embsig.lo libnucleus_la-embshow.lo libnucleus_la-embword.lo ../ajax/core/libajax.la ../ajax/graphics/libajaxg.la ../ajax/acd/libacd.la -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: warning: `/sw/lib/libpcre.la' seems to be moved
libtool: link: warning: `/sw/lib/libmysqlclient.la' seems to be moved
libtool: link: warning: `/sw/lib/libpcre.la' seems to be moved
libtool: link: warning: `/sw/lib/libmysqlclient.la' seems to be moved
libtool: link: warning: `/sw/lib/libpcre.la' seems to be moved
libtool: link: warning: `/sw/lib/libmysqlclient.la' seems to be moved
libtool: link: warning: `/sw/lib/libpcre.la' seems to be moved
libtool: link: warning: `/sw/lib/libmysqlclient.la' seems to be moved
libtool: link: warning: `/sw/lib/libpcre.la' seems to be moved
libtool: link: warning: `/sw/lib/libmysqlclient.la' seems to be moved
libtool: link: warning: `/sw/lib/libpcre.la' seems to be moved
libtool: link: warning: `/sw/lib/libmysqlclient.la' seems to be moved
libtool: link: warning: `/sw/lib/libpcre.la' seems to be moved
libtool: link: warning: `/sw/lib/libmysqlclient.la' seems to be moved
libtool: link: gcc -dynamiclib  -o .libs/libnucleus.6.dylib  .libs/libnucleus_la-embaln.o .libs/libnucleus_la-embcom.o .libs/libnucleus_la-embcons.o .libs/libnucleus_la-embdata.o .libs/libnucleus_la-embdbi.o .libs/libnucleus_la-embdmx.o .libs/libnucleus_la-embdomain.o .libs/libnucleus_la-embest.o .libs/libnucleus_la-embexit.o .libs/libnucleus_la-embgroup.o .libs/libnucleus_la-embiep.o .libs/libnucleus_la-embindex.o .libs/libnucleus_la-embinit.o .libs/libnucleus_la-embmat.o .libs/libnucleus_la-embmisc.o .libs/libnucleus_la-embmol.o .libs/libnucleus_la-embnmer.o .libs/libnucleus_la-embpat.o .libs/libnucleus_la-embpatlist.o .libs/libnucleus_la-embprop.o .libs/libnucleus_la-embpdb.o .libs/libnucleus_la-embread.o .libs/libnucleus_la-embsig.o .libs/libnucleus_la-embshow.o .libs/libnucleus_la-embword.o   -L/sw/lib ../ajax/core/.libs/libajax.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib ../ajax/graphics/.libs/libajaxg.dylib -L/sw/lib/plplot ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib -lplplotd /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm  -O2 -Wl,-dylib_file -Wl,/sw/lib/EMBOSS/lib/libajax.6.dylib:/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -Wl,-dylib_file -Wl,/sw/lib/EMBOSS/lib/libajaxg.6.dylib:/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib -Wl,-dylib_file -Wl,/sw/lib/EMBOSS/lib/libajaxdb.6.dylib:/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib -Wl,-dylib_file -Wl,/sw/lib/EMBOSS/lib/libensembl.6.dylib:/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib -Wl,-dylib_file -Wl,/sw/lib/EMBOSS/lib/libajax.6.dylib:/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -Wl,-dylib_file -Wl,/sw/lib/EMBOSS/lib/libajax.6.dylib:/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -Wl,-dylib_file -Wl,/sw/lib/EMBOSS/lib/libensembl.6.dylib:/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib -Wl,-dylib_file -Wl,/sw/lib/EMBOSS/lib/libajax.6.dylib:/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -Wl,-dylib_file -Wl,/sw/lib/EMBOSS/lib/libajax.6.dylib:/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib   -pthread -install_name  /sw/lib/EMBOSS/lib/libnucleus.6.dylib -compatibility_version 7 -current_version 7.4 -Wl,-single_module
clang: warning: argument unused during compilation: '-pthread'
libtool: link: (cd ".libs" && rm -f "libnucleus.dylib" && ln -s "libnucleus.6.dylib" "libnucleus.dylib")
libtool: link: ( cd ".libs" && rm -f "libnucleus.la" && ln -s "../libnucleus.la" "libnucleus.la" )
Making all in emboss
Making all in acd
make[2]: Nothing to be done for `all'.
Making all in data
Making all in AAINDEX
make[3]: Nothing to be done for `all'.
Making all in CODONS
make[3]: Nothing to be done for `all'.
Making all in JASPAR_CNE
make[3]: Nothing to be done for `all'.
Making all in JASPAR_CORE
make[3]: Nothing to be done for `all'.
Making all in JASPAR_FAM
make[3]: Nothing to be done for `all'.
Making all in JASPAR_PBM
make[3]: Nothing to be done for `all'.
Making all in JASPAR_PBM_HLH
make[3]: Nothing to be done for `all'.
Making all in JASPAR_PBM_HOMEO
make[3]: Nothing to be done for `all'.
Making all in JASPAR_PHYLOFACTS
make[3]: Nothing to be done for `all'.
Making all in JASPAR_POLII
make[3]: Nothing to be done for `all'.
Making all in JASPAR_SPLICE
make[3]: Nothing to be done for `all'.
Making all in OBO
make[3]: Nothing to be done for `all'.
Making all in PRINTS
make[3]: Nothing to be done for `all'.
Making all in PROSITE
make[3]: Nothing to be done for `all'.
Making all in REBASE
make[3]: Nothing to be done for `all'.
Making all in TAXONOMY
make[3]: Nothing to be done for `all'.
make[3]: Nothing to be done for `all-am'.
Making all in index
make[2]: Nothing to be done for `all'.
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT aaindexextract.o -MD -MP -MF .deps/aaindexextract.Tpo -c -o aaindexextract.o aaindexextract.c
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT abiview.o -MD -MP -MF .deps/abiview.Tpo -c -o abiview.o abiview.c
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT acdc.o -MD -MP -MF .deps/acdc.Tpo -c -o acdc.o acdc.c
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT acdgalaxy.o -MD -MP -MF .deps/acdgalaxy.Tpo -c -o acdgalaxy.o acdgalaxy.c
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT acdlog.o -MD -MP -MF .deps/acdlog.Tpo -c -o acdlog.o acdlog.c
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT acdpretty.o -MD -MP -MF .deps/acdpretty.Tpo -c -o acdpretty.o acdpretty.c
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT acdtable.o -MD -MP -MF .deps/acdtable.Tpo -c -o acdtable.o acdtable.c
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT acdtrace.o -MD -MP -MF .deps/acdtrace.Tpo -c -o acdtrace.o acdtrace.c
mv -f .deps/acdtrace.Tpo .deps/acdtrace.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT acdvalid.o -MD -MP -MF .deps/acdvalid.Tpo -c -o acdvalid.o acdvalid.c
mv -f .deps/aaindexextract.Tpo .deps/aaindexextract.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT aligncopy.o -MD -MP -MF .deps/aligncopy.Tpo -c -o aligncopy.o aligncopy.c
mv -f .deps/acdtable.Tpo .deps/acdtable.Po
mv -f .deps/acdlog.Tpo .deps/acdlog.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT aligncopypair.o -MD -MP -MF .deps/aligncopypair.Tpo -c -o aligncopypair.o aligncopypair.c
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT antigenic.o -MD -MP -MF .deps/antigenic.Tpo -c -o antigenic.o antigenic.c
mv -f .deps/acdgalaxy.Tpo .deps/acdgalaxy.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT assemblyget.o -MD -MP -MF .deps/assemblyget.Tpo -c -o assemblyget.o assemblyget.c
mv -f .deps/acdpretty.Tpo .deps/acdpretty.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT backtranambig.o -MD -MP -MF .deps/backtranambig.Tpo -c -o backtranambig.o backtranambig.c
mv -f .deps/acdc.Tpo .deps/acdc.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT backtranseq.o -MD -MP -MF .deps/backtranseq.Tpo -c -o backtranseq.o backtranseq.c
mv -f .deps/abiview.Tpo .deps/abiview.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT banana.o -MD -MP -MF .deps/banana.Tpo -c -o banana.o banana.c
mv -f .deps/acdvalid.Tpo .deps/acdvalid.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT biosed.o -MD -MP -MF .deps/biosed.Tpo -c -o biosed.o biosed.c
mv -f .deps/aligncopy.Tpo .deps/aligncopy.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT btwisted.o -MD -MP -MF .deps/btwisted.Tpo -c -o btwisted.o btwisted.c
mv -f .deps/aligncopypair.Tpo .deps/aligncopypair.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT cachedas.o -MD -MP -MF .deps/cachedas.Tpo -c -o cachedas.o cachedas.c
mv -f .deps/assemblyget.Tpo .deps/assemblyget.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT cachedbfetch.o -MD -MP -MF .deps/cachedbfetch.Tpo -c -o cachedbfetch.o cachedbfetch.c
mv -f .deps/backtranambig.Tpo .deps/backtranambig.Po
mv -f .deps/backtranseq.Tpo .deps/backtranseq.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT cacheebeyesearch.o -MD -MP -MF .deps/cacheebeyesearch.Tpo -c -o cacheebeyesearch.o cacheebeyesearch.c
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT cacheensembl.o -MD -MP -MF .deps/cacheensembl.Tpo -c -o cacheensembl.o cacheensembl.c
mv -f .deps/antigenic.Tpo .deps/antigenic.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT cai.o -MD -MP -MF .deps/cai.Tpo -c -o cai.o cai.c
mv -f .deps/banana.Tpo .deps/banana.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT chaos.o -MD -MP -MF .deps/chaos.Tpo -c -o chaos.o chaos.c
mv -f .deps/biosed.Tpo .deps/biosed.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT charge.o -MD -MP -MF .deps/charge.Tpo -c -o charge.o charge.c
mv -f .deps/btwisted.Tpo .deps/btwisted.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT checktrans.o -MD -MP -MF .deps/checktrans.Tpo -c -o checktrans.o checktrans.c
mv -f .deps/cachedas.Tpo .deps/cachedas.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT chips.o -MD -MP -MF .deps/chips.Tpo -c -o chips.o chips.c
mv -f .deps/cacheebeyesearch.Tpo .deps/cacheebeyesearch.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT cirdna.o -MD -MP -MF .deps/cirdna.Tpo -c -o cirdna.o cirdna.c
mv -f .deps/cacheensembl.Tpo .deps/cacheensembl.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT codcmp.o -MD -MP -MF .deps/codcmp.Tpo -c -o codcmp.o codcmp.c
mv -f .deps/cai.Tpo .deps/cai.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT codcopy.o -MD -MP -MF .deps/codcopy.Tpo -c -o codcopy.o codcopy.c
mv -f .deps/cachedbfetch.Tpo .deps/cachedbfetch.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT coderet.o -MD -MP -MF .deps/coderet.Tpo -c -o coderet.o coderet.c
chaos.c:107:27: warning: incompatible pointer types passing 'float *' to parameter of type 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        ajGraphicsDrawsetLines(1,&x,&y,&x2,&y);
                                 ^~
../ajax/graphics/ajgraph.h:184:57: note: passing argument to parameter 'xx' here
void          ajGraphicsDrawsetLines(ajuint num, PLFLT *xx,PLFLT *yy,
                                                        ^
chaos.c:107:30: warning: incompatible pointer types passing 'float *' to parameter of type 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        ajGraphicsDrawsetLines(1,&x,&y,&x2,&y);
                                    ^~
../ajax/graphics/ajgraph.h:184:67: note: passing argument to parameter 'yy' here
void          ajGraphicsDrawsetLines(ajuint num, PLFLT *xx,PLFLT *yy,
                                                                  ^
chaos.c:107:33: warning: incompatible pointer types passing 'float *' to parameter of type 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        ajGraphicsDrawsetLines(1,&x,&y,&x2,&y);
                                       ^~~
../ajax/graphics/ajgraph.h:185:45: note: passing argument to parameter 'xx2' here
                                     PLFLT *xx2,PLFLT *yy2);
                                            ^
chaos.c:107:37: warning: incompatible pointer types passing 'float *' to parameter of type 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        ajGraphicsDrawsetLines(1,&x,&y,&x2,&y);
                                           ^~
../ajax/graphics/ajgraph.h:185:56: note: passing argument to parameter 'yy2' here
                                     PLFLT *xx2,PLFLT *yy2);
                                                       ^
4 warnings generated.
mv -f .deps/chaos.Tpo .deps/chaos.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT compseq.o -MD -MP -MF .deps/compseq.Tpo -c -o compseq.o compseq.c
mv -f .deps/chips.Tpo .deps/chips.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT cons.o -MD -MP -MF .deps/cons.Tpo -c -o cons.o cons.c
cirdna.c:867:5: warning: incompatible pointer types assigning to 'float *' from 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        xy = ajGraphicsCalcCoord(xDraw, yDraw, Radius, Angle);
           ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cirdna.c:886:6: warning: incompatible pointer types assigning to 'float *' from 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
                xy = ajGraphicsCalcCoord(xDraw, yDraw, Radius, Angle);
                   ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cirdna.c:953:9: warning: incompatible pointer types assigning to 'float *' from 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
    xy1 = ajGraphicsCalcCoord(xDraw, yDraw, r1Ticks, Angle);
        ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cirdna.c:954:9: warning: incompatible pointer types assigning to 'float *' from 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
    xy2 = ajGraphicsCalcCoord(xDraw, yDraw, r2Ticks, Angle);
        ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cirdna.c:974:6: warning: incompatible pointer types assigning to 'float *' from 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        xy1 = ajGraphicsCalcCoord(xDraw, yDraw, r2Ticks+postext, Angle);
            ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cirdna.c:975:6: warning: incompatible pointer types assigning to 'float *' from 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        xy2 = ajGraphicsCalcCoord(xDraw, yDraw, r2Ticks+postext+stringLength,
            ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cirdna.c:977:6: warning: incompatible pointer types assigning to 'float *' from 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        xy3 = ajGraphicsCalcCoord(xDraw, yDraw, r2Ticks+postext-stringLength,
            ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cirdna.c:1320:6: warning: incompatible pointer types assigning to 'float *' from 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        xy1 = ajGraphicsCalcCoord(xDraw, yDraw, Radius, Angle);
            ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cirdna.c:1321:6: warning: incompatible pointer types assigning to 'float *' from 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        xy2 = ajGraphicsCalcCoord(xDraw, yDraw, Radius+middle, Angle+pos);
            ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cirdna.c:1324:6: warning: incompatible pointer types assigning to 'float *' from 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        xy2 = ajGraphicsCalcCoord(xDraw, yDraw, Radius-middle, Angle+pos);
            ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cirdna.c:1332:6: warning: incompatible pointer types assigning to 'float *' from 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        xy1 = ajGraphicsCalcCoord(xDraw, yDraw, Radius+middle, Angle-pos);
            ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cirdna.c:1333:6: warning: incompatible pointer types assigning to 'float *' from 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        xy2 = ajGraphicsCalcCoord(xDraw, yDraw, Radius, Angle);
            ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cirdna.c:1336:6: warning: incompatible pointer types assigning to 'float *' from 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        xy1 = ajGraphicsCalcCoord(xDraw, yDraw, Radius-middle, Angle-pos);
            ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cirdna.c:1381:6: warning: incompatible pointer types assigning to 'float *' from 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        xy1 = ajGraphicsCalcCoord(xDraw, yDraw, Radius+middle, Angle);
            ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cirdna.c:1382:6: warning: incompatible pointer types assigning to 'float *' from 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        xy2 = ajGraphicsCalcCoord(xDraw, yDraw, Radius-middle, Angle);
            ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cirdna.c:1393:6: warning: incompatible pointer types assigning to 'float *' from 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        xy1 = ajGraphicsCalcCoord(xDraw, yDraw, Radius+middle, Angle);
            ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cirdna.c:1394:6: warning: incompatible pointer types assigning to 'float *' from 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
        xy2 = ajGraphicsCalcCoord(xDraw, yDraw, Radius-middle, Angle);
            ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cirdna.c:1431:9: warning: incompatible pointer types assigning to 'float *' from 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
    xy1 = ajGraphicsCalcCoord(xDraw, yDraw, Radius+middle, Angle);
        ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cirdna.c:1432:9: warning: incompatible pointer types assigning to 'float *' from 'PLFLT *' (aka 'double *') [-Wincompatible-pointer-types]
    xy2 = ajGraphicsCalcCoord(xDraw, yDraw, Radius-middle, Angle);
        ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mv -f .deps/checktrans.Tpo .deps/checktrans.Po
mv -f .deps/codcmp.Tpo .deps/codcmp.Po
mv -f .deps/charge.Tpo .deps/charge.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT consambig.o -MD -MP -MF .deps/consambig.Tpo -c -o consambig.o consambig.c
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT cpgplot.o -MD -MP -MF .deps/cpgplot.Tpo -c -o cpgplot.o cpgplot.c
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT cpgreport.o -MD -MP -MF .deps/cpgreport.Tpo -c -o cpgreport.o cpgreport.c
mv -f .deps/codcopy.Tpo .deps/codcopy.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT cusp.o -MD -MP -MF .deps/cusp.Tpo -c -o cusp.o cusp.c
mv -f .deps/coderet.Tpo .deps/coderet.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT cutgextract.o -MD -MP -MF .deps/cutgextract.Tpo -c -o cutgextract.o cutgextract.c
mv -f .deps/cons.Tpo .deps/cons.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT cutseq.o -MD -MP -MF .deps/cutseq.Tpo -c -o cutseq.o cutseq.c
mv -f .deps/consambig.Tpo .deps/consambig.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT dan.o -MD -MP -MF .deps/dan.Tpo -c -o dan.o dan.c
mv -f .deps/compseq.Tpo .deps/compseq.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT dbiblast.o -MD -MP -MF .deps/dbiblast.Tpo -c -o dbiblast.o dbiblast.c
mv -f .deps/cusp.Tpo .deps/cusp.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT dbifasta.o -MD -MP -MF .deps/dbifasta.Tpo -c -o dbifasta.o dbifasta.c
mv -f .deps/cpgreport.Tpo .deps/cpgreport.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT dbiflat.o -MD -MP -MF .deps/dbiflat.Tpo -c -o dbiflat.o dbiflat.c
mv -f .deps/cpgplot.Tpo .deps/cpgplot.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT dbigcg.o -MD -MP -MF .deps/dbigcg.Tpo -c -o dbigcg.o dbigcg.c
19 warnings generated.
mv -f .deps/cirdna.Tpo .deps/cirdna.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT dbtell.o -MD -MP -MF .deps/dbtell.Tpo -c -o dbtell.o dbtell.c
mv -f .deps/cutgextract.Tpo .deps/cutgextract.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT dbxcompress.o -MD -MP -MF .deps/dbxcompress.Tpo -c -o dbxcompress.o dbxcompress.c
mv -f .deps/cutseq.Tpo .deps/cutseq.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT dbxedam.o -MD -MP -MF .deps/dbxedam.Tpo -c -o dbxedam.o dbxedam.c
mv -f .deps/dan.Tpo .deps/dan.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT dbxfasta.o -MD -MP -MF .deps/dbxfasta.Tpo -c -o dbxfasta.o dbxfasta.c
mv -f .deps/dbtell.Tpo .deps/dbtell.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT dbxflat.o -MD -MP -MF .deps/dbxflat.Tpo -c -o dbxflat.o dbxflat.c
mv -f .deps/dbifasta.Tpo .deps/dbifasta.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT dbxgcg.o -MD -MP -MF .deps/dbxgcg.Tpo -c -o dbxgcg.o dbxgcg.c
mv -f .deps/dbxcompress.Tpo .deps/dbxcompress.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT dbxobo.o -MD -MP -MF .deps/dbxobo.Tpo -c -o dbxobo.o dbxobo.c
mv -f .deps/dbxedam.Tpo .deps/dbxedam.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT dbxreport.o -MD -MP -MF .deps/dbxreport.Tpo -c -o dbxreport.o dbxreport.c
mv -f .deps/dbiflat.Tpo .deps/dbiflat.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT dbxresource.o -MD -MP -MF .deps/dbxresource.Tpo -c -o dbxresource.o dbxresource.c
mv -f .deps/dbiblast.Tpo .deps/dbiblast.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT dbxstat.o -MD -MP -MF .deps/dbxstat.Tpo -c -o dbxstat.o dbxstat.c
mv -f .deps/dbxfasta.Tpo .deps/dbxfasta.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT dbxtax.o -MD -MP -MF .deps/dbxtax.Tpo -c -o dbxtax.o dbxtax.c
mv -f .deps/dbigcg.Tpo .deps/dbigcg.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT dbxuncompress.o -MD -MP -MF .deps/dbxuncompress.Tpo -c -o dbxuncompress.o dbxuncompress.c
mv -f .deps/dbxflat.Tpo .deps/dbxflat.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT degapseq.o -MD -MP -MF .deps/degapseq.Tpo -c -o degapseq.o degapseq.c
mv -f .deps/dbxobo.Tpo .deps/dbxobo.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT density.o -MD -MP -MF .deps/density.Tpo -c -o density.o density.c
mv -f .deps/dbxgcg.Tpo .deps/dbxgcg.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT descseq.o -MD -MP -MF .deps/descseq.Tpo -c -o descseq.o descseq.c
mv -f .deps/dbxstat.Tpo .deps/dbxstat.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT diffseq.o -MD -MP -MF .deps/diffseq.Tpo -c -o diffseq.o diffseq.c
mv -f .deps/dbxuncompress.Tpo .deps/dbxuncompress.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT distmat.o -MD -MP -MF .deps/distmat.Tpo -c -o distmat.o distmat.c
mv -f .deps/dbxreport.Tpo .deps/dbxreport.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT dotmatcher.o -MD -MP -MF .deps/dotmatcher.Tpo -c -o dotmatcher.o dotmatcher.c
mv -f .deps/dbxtax.Tpo .deps/dbxtax.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT dotpath.o -MD -MP -MF .deps/dotpath.Tpo -c -o dotpath.o dotpath.c
mv -f .deps/dbxresource.Tpo .deps/dbxresource.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT dottup.o -MD -MP -MF .deps/dottup.Tpo -c -o dottup.o dottup.c
mv -f .deps/degapseq.Tpo .deps/degapseq.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT dreg.o -MD -MP -MF .deps/dreg.Tpo -c -o dreg.o dreg.c
mv -f .deps/descseq.Tpo .deps/descseq.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT drfinddata.o -MD -MP -MF .deps/drfinddata.Tpo -c -o drfinddata.o drfinddata.c
mv -f .deps/dotpath.Tpo .deps/dotpath.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT drfindformat.o -MD -MP -MF .deps/drfindformat.Tpo -c -o drfindformat.o drfindformat.c
mv -f .deps/density.Tpo .deps/density.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT drfindid.o -MD -MP -MF .deps/drfindid.Tpo -c -o drfindid.o drfindid.c
mv -f .deps/dottup.Tpo .deps/dottup.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT drfindresource.o -MD -MP -MF .deps/drfindresource.Tpo -c -o drfindresource.o drfindresource.c
mv -f .deps/diffseq.Tpo .deps/diffseq.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT drget.o -MD -MP -MF .deps/drget.Tpo -c -o drget.o drget.c
mv -f .deps/dreg.Tpo .deps/dreg.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT drtext.o -MD -MP -MF .deps/drtext.Tpo -c -o drtext.o drtext.c
mv -f .deps/dotmatcher.Tpo .deps/dotmatcher.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT edamdef.o -MD -MP -MF .deps/edamdef.Tpo -c -o edamdef.o edamdef.c
mv -f .deps/drfinddata.Tpo .deps/drfinddata.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT edamhasinput.o -MD -MP -MF .deps/edamhasinput.Tpo -c -o edamhasinput.o edamhasinput.c
mv -f .deps/drfindformat.Tpo .deps/drfindformat.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT edamhasoutput.o -MD -MP -MF .deps/edamhasoutput.Tpo -c -o edamhasoutput.o edamhasoutput.c
mv -f .deps/drfindid.Tpo .deps/drfindid.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT edamisformat.o -MD -MP -MF .deps/edamisformat.Tpo -c -o edamisformat.o edamisformat.c
mv -f .deps/drget.Tpo .deps/drget.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT edamisid.o -MD -MP -MF .deps/edamisid.Tpo -c -o edamisid.o edamisid.c
mv -f .deps/distmat.Tpo .deps/distmat.Po
mv -f .deps/drtext.Tpo .deps/drtext.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT edamname.o -MD -MP -MF .deps/edamname.Tpo -c -o edamname.o edamname.c
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT edialign.o -MD -MP -MF .deps/edialign.Tpo -c -o edialign.o edialign.c
mv -f .deps/drfindresource.Tpo .deps/drfindresource.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT einverted.o -MD -MP -MF .deps/einverted.Tpo -c -o einverted.o einverted.c
mv -f .deps/edamdef.Tpo .deps/edamdef.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT embossdata.o -MD -MP -MF .deps/embossdata.Tpo -c -o embossdata.o embossdata.c
mv -f .deps/edamhasinput.Tpo .deps/edamhasinput.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT embossupdate.o -MD -MP -MF .deps/embossupdate.Tpo -c -o embossupdate.o embossupdate.c
mv -f .deps/edamhasoutput.Tpo .deps/edamhasoutput.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT embossversion.o -MD -MP -MF .deps/embossversion.Tpo -c -o embossversion.o embossversion.c
mv -f .deps/edamisformat.Tpo .deps/edamisformat.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT emma.o -MD -MP -MF .deps/emma.Tpo -c -o emma.o emma.c
mv -f .deps/edamname.Tpo .deps/edamname.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT emowse.o -MD -MP -MF .deps/emowse.Tpo -c -o emowse.o emowse.c
mv -f .deps/edamisid.Tpo .deps/edamisid.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT entret.o -MD -MP -MF .deps/entret.Tpo -c -o entret.o entret.c
mv -f .deps/embossdata.Tpo .deps/embossdata.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT epestfind.o -MD -MP -MF .deps/epestfind.Tpo -c -o epestfind.o epestfind.c
mv -f .deps/embossupdate.Tpo .deps/embossupdate.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT eprimer3.o -MD -MP -MF .deps/eprimer3.Tpo -c -o eprimer3.o eprimer3.c
mv -f .deps/einverted.Tpo .deps/einverted.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT eprimer32.o -MD -MP -MF .deps/eprimer32.Tpo -c -o eprimer32.o eprimer32.c
mv -f .deps/entret.Tpo .deps/entret.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT equicktandem.o -MD -MP -MF .deps/equicktandem.Tpo -c -o equicktandem.o equicktandem.c
mv -f .deps/embossversion.Tpo .deps/embossversion.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT est2genome.o -MD -MP -MF .deps/est2genome.Tpo -c -o est2genome.o est2genome.c
mv -f .deps/emma.Tpo .deps/emma.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT etandem.o -MD -MP -MF .deps/etandem.Tpo -c -o etandem.o etandem.c
mv -f .deps/epestfind.Tpo .deps/epestfind.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT extractalign.o -MD -MP -MF .deps/extractalign.Tpo -c -o extractalign.o extractalign.c
mv -f .deps/emowse.Tpo .deps/emowse.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT extractfeat.o -MD -MP -MF .deps/extractfeat.Tpo -c -o extractfeat.o extractfeat.c
mv -f .deps/equicktandem.Tpo .deps/equicktandem.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT extractseq.o -MD -MP -MF .deps/extractseq.Tpo -c -o extractseq.o extractseq.c
mv -f .deps/eprimer3.Tpo .deps/eprimer3.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT featcopy.o -MD -MP -MF .deps/featcopy.Tpo -c -o featcopy.o featcopy.c
mv -f .deps/est2genome.Tpo .deps/est2genome.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT featmerge.o -MD -MP -MF .deps/featmerge.Tpo -c -o featmerge.o featmerge.c
mv -f .deps/eprimer32.Tpo .deps/eprimer32.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT featreport.o -MD -MP -MF .deps/featreport.Tpo -c -o featreport.o featreport.c
mv -f .deps/etandem.Tpo .deps/etandem.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT feattext.o -MD -MP -MF .deps/feattext.Tpo -c -o feattext.o feattext.c
mv -f .deps/extractalign.Tpo .deps/extractalign.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT findkm.o -MD -MP -MF .deps/findkm.Tpo -c -o findkm.o findkm.c
mv -f .deps/extractseq.Tpo .deps/extractseq.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT freak.o -MD -MP -MF .deps/freak.Tpo -c -o freak.o freak.c
mv -f .deps/extractfeat.Tpo .deps/extractfeat.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT fuzznuc.o -MD -MP -MF .deps/fuzznuc.Tpo -c -o fuzznuc.o fuzznuc.c
mv -f .deps/featcopy.Tpo .deps/featcopy.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT fuzzpro.o -MD -MP -MF .deps/fuzzpro.Tpo -c -o fuzzpro.o fuzzpro.c
mv -f .deps/featmerge.Tpo .deps/featmerge.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT fuzztran.o -MD -MP -MF .deps/fuzztran.Tpo -c -o fuzztran.o fuzztran.c
mv -f .deps/featreport.Tpo .deps/featreport.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT garnier.o -MD -MP -MF .deps/garnier.Tpo -c -o garnier.o garnier.c
mv -f .deps/feattext.Tpo .deps/feattext.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT geecee.o -MD -MP -MF .deps/geecee.Tpo -c -o geecee.o geecee.c
mv -f .deps/findkm.Tpo .deps/findkm.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT getorf.o -MD -MP -MF .deps/getorf.Tpo -c -o getorf.o getorf.c
mv -f .deps/fuzznuc.Tpo .deps/fuzznuc.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT godef.o -MD -MP -MF .deps/godef.Tpo -c -o godef.o godef.c
mv -f .deps/freak.Tpo .deps/freak.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT goname.o -MD -MP -MF .deps/goname.Tpo -c -o goname.o goname.c
mv -f .deps/fuzzpro.Tpo .deps/fuzzpro.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT helixturnhelix.o -MD -MP -MF .deps/helixturnhelix.Tpo -c -o helixturnhelix.o helixturnhelix.c
mv -f .deps/fuzztran.Tpo .deps/fuzztran.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT hmoment.o -MD -MP -MF .deps/hmoment.Tpo -c -o hmoment.o hmoment.c
mv -f .deps/geecee.Tpo .deps/geecee.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT iep.o -MD -MP -MF .deps/iep.Tpo -c -o iep.o iep.c
mv -f .deps/garnier.Tpo .deps/garnier.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT infoalign.o -MD -MP -MF .deps/infoalign.Tpo -c -o infoalign.o infoalign.c
mv -f .deps/getorf.Tpo .deps/getorf.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT infoassembly.o -MD -MP -MF .deps/infoassembly.Tpo -c -o infoassembly.o infoassembly.c
mv -f .deps/godef.Tpo .deps/godef.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT infobase.o -MD -MP -MF .deps/infobase.Tpo -c -o infobase.o infobase.c
mv -f .deps/goname.Tpo .deps/goname.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT inforesidue.o -MD -MP -MF .deps/inforesidue.Tpo -c -o inforesidue.o inforesidue.c
mv -f .deps/hmoment.Tpo .deps/hmoment.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT infoseq.o -MD -MP -MF .deps/infoseq.Tpo -c -o infoseq.o infoseq.c
mv -f .deps/iep.Tpo .deps/iep.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT isochore.o -MD -MP -MF .deps/isochore.Tpo -c -o isochore.o isochore.c
mv -f .deps/helixturnhelix.Tpo .deps/helixturnhelix.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT jaspextract.o -MD -MP -MF .deps/jaspextract.Tpo -c -o jaspextract.o jaspextract.c
mv -f .deps/infobase.Tpo .deps/infobase.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT jaspscan.o -MD -MP -MF .deps/jaspscan.Tpo -c -o jaspscan.o jaspscan.c
mv -f .deps/infoalign.Tpo .deps/infoalign.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT jembossctl.o -MD -MP -MF .deps/jembossctl.Tpo -c -o jembossctl.o jembossctl.c
mv -f .deps/inforesidue.Tpo .deps/inforesidue.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT lindna.o -MD -MP -MF .deps/lindna.Tpo -c -o lindna.o lindna.c
mv -f .deps/infoseq.Tpo .deps/infoseq.Po
mv -f .deps/isochore.Tpo .deps/isochore.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT listor.o -MD -MP -MF .deps/listor.Tpo -c -o listor.o listor.c
mv -f .deps/infoassembly.Tpo .deps/infoassembly.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT makenucseq.o -MD -MP -MF .deps/makenucseq.Tpo -c -o makenucseq.o makenucseq.c
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT makeprotseq.o -MD -MP -MF .deps/makeprotseq.Tpo -c -o makeprotseq.o makeprotseq.c
mv -f .deps/jaspextract.Tpo .deps/jaspextract.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT marscan.o -MD -MP -MF .deps/marscan.Tpo -c -o marscan.o marscan.c
mv -f .deps/jembossctl.Tpo .deps/jembossctl.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT maskambignuc.o -MD -MP -MF .deps/maskambignuc.Tpo -c -o maskambignuc.o maskambignuc.c
mv -f .deps/makenucseq.Tpo .deps/makenucseq.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT maskambigprot.o -MD -MP -MF .deps/maskambigprot.Tpo -c -o maskambigprot.o maskambigprot.c
mv -f .deps/listor.Tpo .deps/listor.Po
mv -f .deps/makeprotseq.Tpo .deps/makeprotseq.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT maskfeat.o -MD -MP -MF .deps/maskfeat.Tpo -c -o maskfeat.o maskfeat.c
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT maskseq.o -MD -MP -MF .deps/maskseq.Tpo -c -o maskseq.o maskseq.c
mv -f .deps/jaspscan.Tpo .deps/jaspscan.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT matcher.o -MD -MP -MF .deps/matcher.Tpo -c -o matcher.o matcher.c
mv -f .deps/marscan.Tpo .deps/marscan.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT megamerger.o -MD -MP -MF .deps/megamerger.Tpo -c -o megamerger.o megamerger.c
mv -f .deps/maskambignuc.Tpo .deps/maskambignuc.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT merger.o -MD -MP -MF .deps/merger.Tpo -c -o merger.o merger.c
mv -f .deps/lindna.Tpo .deps/lindna.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT msbar.o -MD -MP -MF .deps/msbar.Tpo -c -o msbar.o msbar.c
mv -f .deps/maskambigprot.Tpo .deps/maskambigprot.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT mwcontam.o -MD -MP -MF .deps/mwcontam.Tpo -c -o mwcontam.o mwcontam.c
mv -f .deps/maskseq.Tpo .deps/maskseq.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT mwfilter.o -MD -MP -MF .deps/mwfilter.Tpo -c -o mwfilter.o mwfilter.c
mv -f .deps/maskfeat.Tpo .deps/maskfeat.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT needle.o -MD -MP -MF .deps/needle.Tpo -c -o needle.o needle.c
mv -f .deps/megamerger.Tpo .deps/megamerger.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT needleall.o -MD -MP -MF .deps/needleall.Tpo -c -o needleall.o needleall.c
mv -f .deps/merger.Tpo .deps/merger.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT newcpgreport.o -MD -MP -MF .deps/newcpgreport.Tpo -c -o newcpgreport.o newcpgreport.c
mv -f .deps/mwcontam.Tpo .deps/mwcontam.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT newcpgseek.o -MD -MP -MF .deps/newcpgseek.Tpo -c -o newcpgseek.o newcpgseek.c
mv -f .deps/msbar.Tpo .deps/msbar.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT newseq.o -MD -MP -MF .deps/newseq.Tpo -c -o newseq.o newseq.c
mv -f .deps/needle.Tpo .deps/needle.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT nohtml.o -MD -MP -MF .deps/nohtml.Tpo -c -o nohtml.o nohtml.c
mv -f .deps/mwfilter.Tpo .deps/mwfilter.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT noreturn.o -MD -MP -MF .deps/noreturn.Tpo -c -o noreturn.o noreturn.c
mv -f .deps/edialign.Tpo .deps/edialign.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT nospace.o -MD -MP -MF .deps/nospace.Tpo -c -o nospace.o nospace.c
mv -f .deps/needleall.Tpo .deps/needleall.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT notab.o -MD -MP -MF .deps/notab.Tpo -c -o notab.o notab.c
mv -f .deps/matcher.Tpo .deps/matcher.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT notseq.o -MD -MP -MF .deps/notseq.Tpo -c -o notseq.o notseq.c
mv -f .deps/newcpgreport.Tpo .deps/newcpgreport.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT nthseq.o -MD -MP -MF .deps/nthseq.Tpo -c -o nthseq.o nthseq.c
mv -f .deps/newseq.Tpo .deps/newseq.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT nthseqset.o -MD -MP -MF .deps/nthseqset.Tpo -c -o nthseqset.o nthseqset.c
mv -f .deps/nohtml.Tpo .deps/nohtml.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT octanol.o -MD -MP -MF .deps/octanol.Tpo -c -o octanol.o octanol.c
mv -f .deps/newcpgseek.Tpo .deps/newcpgseek.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT oddcomp.o -MD -MP -MF .deps/oddcomp.Tpo -c -o oddcomp.o oddcomp.c
mv -f .deps/noreturn.Tpo .deps/noreturn.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT ontocount.o -MD -MP -MF .deps/ontocount.Tpo -c -o ontocount.o ontocount.c
mv -f .deps/nospace.Tpo .deps/nospace.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT ontoget.o -MD -MP -MF .deps/ontoget.Tpo -c -o ontoget.o ontoget.c
mv -f .deps/notab.Tpo .deps/notab.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT ontogetcommon.o -MD -MP -MF .deps/ontogetcommon.Tpo -c -o ontogetcommon.o ontogetcommon.c
mv -f .deps/nthseq.Tpo .deps/nthseq.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT ontogetdown.o -MD -MP -MF .deps/ontogetdown.Tpo -c -o ontogetdown.o ontogetdown.c
mv -f .deps/notseq.Tpo .deps/notseq.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT ontogetobsolete.o -MD -MP -MF .deps/ontogetobsolete.Tpo -c -o ontogetobsolete.o ontogetobsolete.c
mv -f .deps/nthseqset.Tpo .deps/nthseqset.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT ontogetroot.o -MD -MP -MF .deps/ontogetroot.Tpo -c -o ontogetroot.o ontogetroot.c
mv -f .deps/octanol.Tpo .deps/octanol.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT ontogetsibs.o -MD -MP -MF .deps/ontogetsibs.Tpo -c -o ontogetsibs.o ontogetsibs.c
mv -f .deps/ontocount.Tpo .deps/ontocount.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT ontogetup.o -MD -MP -MF .deps/ontogetup.Tpo -c -o ontogetup.o ontogetup.c
mv -f .deps/oddcomp.Tpo .deps/oddcomp.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT ontoisobsolete.o -MD -MP -MF .deps/ontoisobsolete.Tpo -c -o ontoisobsolete.o ontoisobsolete.c
mv -f .deps/ontoget.Tpo .deps/ontoget.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT ontotext.o -MD -MP -MF .deps/ontotext.Tpo -c -o ontotext.o ontotext.c
mv -f .deps/ontogetcommon.Tpo .deps/ontogetcommon.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT palindrome.o -MD -MP -MF .deps/palindrome.Tpo -c -o palindrome.o palindrome.c
mv -f .deps/ontogetdown.Tpo .deps/ontogetdown.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT pasteseq.o -MD -MP -MF .deps/pasteseq.Tpo -c -o pasteseq.o pasteseq.c
mv -f .deps/ontogetobsolete.Tpo .deps/ontogetobsolete.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT patmatdb.o -MD -MP -MF .deps/patmatdb.Tpo -c -o patmatdb.o patmatdb.c
mv -f .deps/ontogetroot.Tpo .deps/ontogetroot.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT patmatmotifs.o -MD -MP -MF .deps/patmatmotifs.Tpo -c -o patmatmotifs.o patmatmotifs.c
mv -f .deps/ontogetsibs.Tpo .deps/ontogetsibs.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT pepcoil.o -MD -MP -MF .deps/pepcoil.Tpo -c -o pepcoil.o pepcoil.c
mv -f .deps/ontogetup.Tpo .deps/ontogetup.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT pepdigest.o -MD -MP -MF .deps/pepdigest.Tpo -c -o pepdigest.o pepdigest.c
mv -f .deps/ontoisobsolete.Tpo .deps/ontoisobsolete.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT pepinfo.o -MD -MP -MF .deps/pepinfo.Tpo -c -o pepinfo.o pepinfo.c
mv -f .deps/ontotext.Tpo .deps/ontotext.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT pepnet.o -MD -MP -MF .deps/pepnet.Tpo -c -o pepnet.o pepnet.c
mv -f .deps/palindrome.Tpo .deps/palindrome.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT pepstats.o -MD -MP -MF .deps/pepstats.Tpo -c -o pepstats.o pepstats.c
mv -f .deps/pasteseq.Tpo .deps/pasteseq.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT pepwheel.o -MD -MP -MF .deps/pepwheel.Tpo -c -o pepwheel.o pepwheel.c
mv -f .deps/patmatdb.Tpo .deps/patmatdb.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT pepwindow.o -MD -MP -MF .deps/pepwindow.Tpo -c -o pepwindow.o pepwindow.c
mv -f .deps/patmatmotifs.Tpo .deps/patmatmotifs.Po
pepinfo.c:558:36: warning: incompatible pointer types passing 'float *' to parameter of type 'const PLFLT *' (aka 'const double *') [-Wincompatible-pointer-types]
    ajHistDataCopy(hist, hist_num, farray);
                                   ^~~~~~
../ajax/graphics/ajhist.h:173:69: note: passing argument to parameter 'data' here
void    ajHistDataCopy (AjPHist hist, ajuint indexnum, PLFLT const *data);
                                                                    ^
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT pepwindowall.o -MD -MP -MF .deps/pepwindowall.Tpo -c -o pepwindowall.o pepwindowall.c
mv -f .deps/pepdigest.Tpo .deps/pepdigest.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT plotcon.o -MD -MP -MF .deps/plotcon.Tpo -c -o plotcon.o plotcon.c
mv -f .deps/pepcoil.Tpo .deps/pepcoil.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT plotorf.o -MD -MP -MF .deps/plotorf.Tpo -c -o plotorf.o plotorf.c
1 warning generated.
mv -f .deps/pepinfo.Tpo .deps/pepinfo.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT polydot.o -MD -MP -MF .deps/polydot.Tpo -c -o polydot.o polydot.c
mv -f .deps/pepnet.Tpo .deps/pepnet.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT preg.o -MD -MP -MF .deps/preg.Tpo -c -o preg.o preg.c
mv -f .deps/pepwheel.Tpo .deps/pepwheel.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT prettyplot.o -MD -MP -MF .deps/prettyplot.Tpo -c -o prettyplot.o prettyplot.c
mv -f .deps/pepstats.Tpo .deps/pepstats.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT prettyseq.o -MD -MP -MF .deps/prettyseq.Tpo -c -o prettyseq.o prettyseq.c
mv -f .deps/pepwindow.Tpo .deps/pepwindow.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT primersearch.o -MD -MP -MF .deps/primersearch.Tpo -c -o primersearch.o primersearch.c
mv -f .deps/pepwindowall.Tpo .deps/pepwindowall.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT printsextract.o -MD -MP -MF .deps/printsextract.Tpo -c -o printsextract.o printsextract.c
mv -f .deps/plotcon.Tpo .deps/plotcon.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT profit.o -MD -MP -MF .deps/profit.Tpo -c -o profit.o profit.c
mv -f .deps/preg.Tpo .deps/preg.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT prophecy.o -MD -MP -MF .deps/prophecy.Tpo -c -o prophecy.o prophecy.c
mv -f .deps/plotorf.Tpo .deps/plotorf.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT prophet.o -MD -MP -MF .deps/prophet.Tpo -c -o prophet.o prophet.c
mv -f .deps/polydot.Tpo .deps/polydot.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT prosextract.o -MD -MP -MF .deps/prosextract.Tpo -c -o prosextract.o prosextract.c
mv -f .deps/primersearch.Tpo .deps/primersearch.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT pscan.o -MD -MP -MF .deps/pscan.Tpo -c -o pscan.o pscan.c
mv -f .deps/prettyseq.Tpo .deps/prettyseq.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT psiphi.o -MD -MP -MF .deps/psiphi.Tpo -c -o psiphi.o psiphi.c
mv -f .deps/prosextract.Tpo .deps/prosextract.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT rebaseextract.o -MD -MP -MF .deps/rebaseextract.Tpo -c -o rebaseextract.o rebaseextract.c
mv -f .deps/profit.Tpo .deps/profit.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT recoder.o -MD -MP -MF .deps/recoder.Tpo -c -o recoder.o recoder.c
mv -f .deps/prophet.Tpo .deps/prophet.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT redata.o -MD -MP -MF .deps/redata.Tpo -c -o redata.o redata.c
mv -f .deps/printsextract.Tpo .deps/printsextract.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT refseqget.o -MD -MP -MF .deps/refseqget.Tpo -c -o refseqget.o refseqget.c
mv -f .deps/prophecy.Tpo .deps/prophecy.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT remap.o -MD -MP -MF .deps/remap.Tpo -c -o remap.o remap.c
mv -f .deps/prettyplot.Tpo .deps/prettyplot.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT restover.o -MD -MP -MF .deps/restover.Tpo -c -o restover.o restover.c
mv -f .deps/pscan.Tpo .deps/pscan.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT restrict.o -MD -MP -MF .deps/restrict.Tpo -c -o restrict.o restrict.c
mv -f .deps/psiphi.Tpo .deps/psiphi.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT revseq.o -MD -MP -MF .deps/revseq.Tpo -c -o revseq.o revseq.c
mv -f .deps/refseqget.Tpo .deps/refseqget.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT seealso.o -MD -MP -MF .deps/seealso.Tpo -c -o seealso.o seealso.c
mv -f .deps/redata.Tpo .deps/redata.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT seqcount.o -MD -MP -MF .deps/seqcount.Tpo -c -o seqcount.o seqcount.c
mv -f .deps/rebaseextract.Tpo .deps/rebaseextract.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT seqmatchall.o -MD -MP -MF .deps/seqmatchall.Tpo -c -o seqmatchall.o seqmatchall.c
mv -f .deps/recoder.Tpo .deps/recoder.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT seqret.o -MD -MP -MF .deps/seqret.Tpo -c -o seqret.o seqret.c
mv -f .deps/revseq.Tpo .deps/revseq.Po
mv -f .deps/restover.Tpo .deps/restover.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT seqretsetall.o -MD -MP -MF .deps/seqretsetall.Tpo -c -o seqretsetall.o seqretsetall.c
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT seqretsplit.o -MD -MP -MF .deps/seqretsplit.Tpo -c -o seqretsplit.o seqretsplit.c
mv -f .deps/seealso.Tpo .deps/seealso.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT seqxref.o -MD -MP -MF .deps/seqxref.Tpo -c -o seqxref.o seqxref.c
mv -f .deps/seqcount.Tpo .deps/seqcount.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT seqxrefget.o -MD -MP -MF .deps/seqxrefget.Tpo -c -o seqxrefget.o seqxrefget.c
mv -f .deps/seqmatchall.Tpo .deps/seqmatchall.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT servertell.o -MD -MP -MF .deps/servertell.Tpo -c -o servertell.o servertell.c
mv -f .deps/seqret.Tpo .deps/seqret.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT showalign.o -MD -MP -MF .deps/showalign.Tpo -c -o showalign.o showalign.c
mv -f .deps/remap.Tpo .deps/remap.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT showdb.o -MD -MP -MF .deps/showdb.Tpo -c -o showdb.o showdb.c
mv -f .deps/restrict.Tpo .deps/restrict.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT showfeat.o -MD -MP -MF .deps/showfeat.Tpo -c -o showfeat.o showfeat.c
mv -f .deps/seqretsetall.Tpo .deps/seqretsetall.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT showorf.o -MD -MP -MF .deps/showorf.Tpo -c -o showorf.o showorf.c
mv -f .deps/seqretsplit.Tpo .deps/seqretsplit.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT showpep.o -MD -MP -MF .deps/showpep.Tpo -c -o showpep.o showpep.c
mv -f .deps/seqxref.Tpo .deps/seqxref.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT showseq.o -MD -MP -MF .deps/showseq.Tpo -c -o showseq.o showseq.c
mv -f .deps/seqxrefget.Tpo .deps/seqxrefget.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT showserver.o -MD -MP -MF .deps/showserver.Tpo -c -o showserver.o showserver.c
mv -f .deps/servertell.Tpo .deps/servertell.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT shuffleseq.o -MD -MP -MF .deps/shuffleseq.Tpo -c -o shuffleseq.o shuffleseq.c
mv -f .deps/showdb.Tpo .deps/showdb.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT sigcleave.o -MD -MP -MF .deps/sigcleave.Tpo -c -o sigcleave.o sigcleave.c
mv -f .deps/showpep.Tpo .deps/showpep.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT silent.o -MD -MP -MF .deps/silent.Tpo -c -o silent.o silent.c
mv -f .deps/showalign.Tpo .deps/showalign.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT sirna.o -MD -MP -MF .deps/sirna.Tpo -c -o sirna.o sirna.c
mv -f .deps/showorf.Tpo .deps/showorf.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT sixpack.o -MD -MP -MF .deps/sixpack.Tpo -c -o sixpack.o sixpack.c
mv -f .deps/shuffleseq.Tpo .deps/shuffleseq.Po
mv -f .deps/showseq.Tpo .deps/showseq.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT sizeseq.o -MD -MP -MF .deps/sizeseq.Tpo -c -o sizeseq.o sizeseq.c
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT skipredundant.o -MD -MP -MF .deps/skipredundant.Tpo -c -o skipredundant.o skipredundant.c
mv -f .deps/showfeat.Tpo .deps/showfeat.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT skipseq.o -MD -MP -MF .deps/skipseq.Tpo -c -o skipseq.o skipseq.c
mv -f .deps/showserver.Tpo .deps/showserver.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT splitsource.o -MD -MP -MF .deps/splitsource.Tpo -c -o splitsource.o splitsource.c
mv -f .deps/sigcleave.Tpo .deps/sigcleave.Po
mv -f .deps/sizeseq.Tpo .deps/sizeseq.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT splitter.o -MD -MP -MF .deps/splitter.Tpo -c -o splitter.o splitter.c
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT stretcher.o -MD -MP -MF .deps/stretcher.Tpo -c -o stretcher.o stretcher.c
mv -f .deps/skipseq.Tpo .deps/skipseq.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT stssearch.o -MD -MP -MF .deps/stssearch.Tpo -c -o stssearch.o stssearch.c
mv -f .deps/skipredundant.Tpo .deps/skipredundant.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT supermatcher.o -MD -MP -MF .deps/supermatcher.Tpo -c -o supermatcher.o supermatcher.c
mv -f .deps/sixpack.Tpo .deps/sixpack.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT syco.o -MD -MP -MF .deps/syco.Tpo -c -o syco.o syco.c
mv -f .deps/silent.Tpo .deps/silent.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT taxget.o -MD -MP -MF .deps/taxget.Tpo -c -o taxget.o taxget.c
mv -f .deps/splitsource.Tpo .deps/splitsource.Po
mv -f .deps/sirna.Tpo .deps/sirna.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT taxgetdown.o -MD -MP -MF .deps/taxgetdown.Tpo -c -o taxgetdown.o taxgetdown.c
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT taxgetrank.o -MD -MP -MF .deps/taxgetrank.Tpo -c -o taxgetrank.o taxgetrank.c
mv -f .deps/stssearch.Tpo .deps/stssearch.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT taxgetspecies.o -MD -MP -MF .deps/taxgetspecies.Tpo -c -o taxgetspecies.o taxgetspecies.c
mv -f .deps/splitter.Tpo .deps/splitter.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT taxgetup.o -MD -MP -MF .deps/taxgetup.Tpo -c -o taxgetup.o taxgetup.c
mv -f .deps/supermatcher.Tpo .deps/supermatcher.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT tcode.o -MD -MP -MF .deps/tcode.Tpo -c -o tcode.o tcode.c
mv -f .deps/taxget.Tpo .deps/taxget.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT textget.o -MD -MP -MF .deps/textget.Tpo -c -o textget.o textget.c
mv -f .deps/syco.Tpo .deps/syco.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT textsearch.o -MD -MP -MF .deps/textsearch.Tpo -c -o textsearch.o textsearch.c
mv -f .deps/taxgetrank.Tpo .deps/taxgetrank.Po
mv -f .deps/taxgetdown.Tpo .deps/taxgetdown.Po
mv -f .deps/stretcher.Tpo .deps/stretcher.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT tfextract.o -MD -MP -MF .deps/tfextract.Tpo -c -o tfextract.o tfextract.c
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT tfm.o -MD -MP -MF .deps/tfm.Tpo -c -o tfm.o tfm.c
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT tfscan.o -MD -MP -MF .deps/tfscan.Tpo -c -o tfscan.o tfscan.c
mv -f .deps/taxgetup.Tpo .deps/taxgetup.Po
mv -f .deps/taxgetspecies.Tpo .deps/taxgetspecies.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT tmap.o -MD -MP -MF .deps/tmap.Tpo -c -o tmap.o tmap.c
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT tranalign.o -MD -MP -MF .deps/tranalign.Tpo -c -o tranalign.o tranalign.c
mv -f .deps/textget.Tpo .deps/textget.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT transeq.o -MD -MP -MF .deps/transeq.Tpo -c -o transeq.o transeq.c
mv -f .deps/textsearch.Tpo .deps/textsearch.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT trimest.o -MD -MP -MF .deps/trimest.Tpo -c -o trimest.o trimest.c
mv -f .deps/tfextract.Tpo .deps/tfextract.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT trimseq.o -MD -MP -MF .deps/trimseq.Tpo -c -o trimseq.o trimseq.c
mv -f .deps/tfm.Tpo .deps/tfm.Po
mv -f .deps/tfscan.Tpo .deps/tfscan.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT trimspace.o -MD -MP -MF .deps/trimspace.Tpo -c -o trimspace.o trimspace.c
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT twofeat.o -MD -MP -MF .deps/twofeat.Tpo -c -o twofeat.o twofeat.c
mv -f .deps/tcode.Tpo .deps/tcode.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT union.o -MD -MP -MF .deps/union.Tpo -c -o union.o union.c
mv -f .deps/tranalign.Tpo .deps/tranalign.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT urlget.o -MD -MP -MF .deps/urlget.Tpo -c -o urlget.o urlget.c
mv -f .deps/transeq.Tpo .deps/transeq.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT variationget.o -MD -MP -MF .deps/variationget.Tpo -c -o variationget.o variationget.c
mv -f .deps/trimest.Tpo .deps/trimest.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT vectorstrip.o -MD -MP -MF .deps/vectorstrip.Tpo -c -o vectorstrip.o vectorstrip.c
mv -f .deps/trimspace.Tpo .deps/trimspace.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT water.o -MD -MP -MF .deps/water.Tpo -c -o water.o water.c
mv -f .deps/trimseq.Tpo .deps/trimseq.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT whichdb.o -MD -MP -MF .deps/whichdb.Tpo -c -o whichdb.o whichdb.c
mv -f .deps/union.Tpo .deps/union.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT wobble.o -MD -MP -MF .deps/wobble.Tpo -c -o wobble.o wobble.c
mv -f .deps/twofeat.Tpo .deps/twofeat.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT wordcount.o -MD -MP -MF .deps/wordcount.Tpo -c -o wordcount.o wordcount.c
mv -f .deps/urlget.Tpo .deps/urlget.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT wordfinder.o -MD -MP -MF .deps/wordfinder.Tpo -c -o wordfinder.o wordfinder.c
mv -f .deps/variationget.Tpo .deps/variationget.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT wordmatch.o -MD -MP -MF .deps/wordmatch.Tpo -c -o wordmatch.o wordmatch.c
mv -f .deps/water.Tpo .deps/water.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT wossdata.o -MD -MP -MF .deps/wossdata.Tpo -c -o wossdata.o wossdata.c
mv -f .deps/whichdb.Tpo .deps/whichdb.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT wossinput.o -MD -MP -MF .deps/wossinput.Tpo -c -o wossinput.o wossinput.c
mv -f .deps/wobble.Tpo .deps/wobble.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT wossname.o -MD -MP -MF .deps/wossname.Tpo -c -o wossname.o wossname.c
mv -f .deps/vectorstrip.Tpo .deps/vectorstrip.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT wossoperation.o -MD -MP -MF .deps/wossoperation.Tpo -c -o wossoperation.o wossoperation.c
mv -f .deps/wordcount.Tpo .deps/wordcount.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT wossoutput.o -MD -MP -MF .deps/wossoutput.Tpo -c -o wossoutput.o wossoutput.c
mv -f .deps/tmap.Tpo .deps/tmap.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT wossparam.o -MD -MP -MF .deps/wossparam.Tpo -c -o wossparam.o wossparam.c
mv -f .deps/wordfinder.Tpo .deps/wordfinder.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT wosstopic.o -MD -MP -MF .deps/wosstopic.Tpo -c -o wosstopic.o wosstopic.c
mv -f .deps/wordmatch.Tpo .deps/wordmatch.Po
gcc -DHAVE_CONFIG_H -I. -I../ajax/core  -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics  -I/sw/include/plplot  -I../nucleus  -I/System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home -I/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/java_include -DNO_AUTH -I/sw/include -DAJ_MACOSXLF    -O2 -MT yank.o -MD -MP -MF .deps/yank.Tpo -c -o yank.o yank.c
mv -f .deps/wossdata.Tpo .deps/wossdata.Po
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o aaindexextract aaindexextract.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
mv -f .deps/wossinput.Tpo .deps/wossinput.Po
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o abiview abiview.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
mv -f .deps/wossname.Tpo .deps/wossname.Po
mv -f .deps/wossoperation.Tpo .deps/wossoperation.Po
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o acdc acdc.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o acdgalaxy acdgalaxy.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
mv -f .deps/wossoutput.Tpo .deps/wossoutput.Po
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o acdlog acdlog.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
mv -f .deps/wossparam.Tpo .deps/wossparam.Po
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o acdpretty acdpretty.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
mv -f .deps/wosstopic.Tpo .deps/wosstopic.Po
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o acdtable acdtable.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
mv -f .deps/yank.Tpo .deps/yank.Po
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o acdtrace acdtrace.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/acdgalaxy acdgalaxy.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/abiview abiview.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/aaindexextract aaindexextract.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/acdc acdc.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/acdtrace acdtrace.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/acdtable acdtable.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/acdlog acdlog.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/acdpretty acdpretty.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o acdvalid acdvalid.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o aligncopy aligncopy.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o aligncopypair aligncopypair.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o antigenic antigenic.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o assemblyget assemblyget.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o backtranambig backtranambig.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o backtranseq backtranseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o banana banana.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/banana banana.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/aligncopypair aligncopypair.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/antigenic antigenic.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/assemblyget assemblyget.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/backtranambig backtranambig.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/aligncopy aligncopy.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/backtranseq backtranseq.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/acdvalid acdvalid.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o biosed biosed.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o btwisted btwisted.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o cachedas cachedas.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o cachedbfetch cachedbfetch.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o cacheebeyesearch cacheebeyesearch.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o cacheensembl cacheensembl.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o cai cai.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o chaos chaos.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/biosed biosed.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/cachedbfetch cachedbfetch.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/btwisted btwisted.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/cacheebeyesearch cacheebeyesearch.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/cacheensembl cacheensembl.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/cachedas cachedas.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/cai cai.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/chaos chaos.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o charge charge.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o checktrans checktrans.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o chips chips.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o cirdna cirdna.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o codcmp codcmp.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o codcopy codcopy.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o coderet coderet.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o compseq compseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/chips chips.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/charge charge.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/codcopy codcopy.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/codcmp codcmp.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/cirdna cirdna.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/checktrans checktrans.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/coderet coderet.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clangclang: warning: argument unused during compilation: '-pthread'
clang: : warning: warningargument unused during compilation: '-pthread': 
argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/compseq compseq.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o cons cons.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o consambig consambig.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o cpgplot cpgplot.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o cpgreport cpgreport.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o cusp cusp.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o cutgextract cutgextract.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o cutseq cutseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o dan dan.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/consambig consambig.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/cons cons.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/cpgreport cpgreport.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/cpgplot cpgplot.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/cutseq cutseq.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/cutgextract cutgextract.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/cusp cusp.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/dan dan.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o dbiblast dbiblast.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o dbifasta dbifasta.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o dbiflat dbiflat.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o dbigcg dbigcg.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o dbtell dbtell.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o dbxcompress dbxcompress.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o dbxedam dbxedam.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o dbxfasta dbxfasta.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/dbiblast dbiblast.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/dbifasta dbifasta.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/dbiflat dbiflat.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/dbtell dbtell.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/dbigcg dbigcg.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/dbxcompress dbxcompress.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/dbxedam dbxedam.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/dbxfasta dbxfasta.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o dbxflat dbxflat.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o dbxgcg dbxgcg.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o dbxobo dbxobo.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o dbxreport dbxreport.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o dbxresource dbxresource.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o dbxstat dbxstat.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o dbxtax dbxtax.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o dbxuncompress dbxuncompress.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/dbxobo dbxobo.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/dbxflat dbxflat.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/dbxgcg dbxgcg.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/dbxreport dbxreport.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/dbxresource dbxresource.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/dbxstat dbxstat.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/dbxtax dbxtax.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o degapseq degapseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o density density.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/dbxuncompress dbxuncompress.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o descseq descseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o diffseq diffseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o distmat distmat.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o dotmatcher dotmatcher.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o dotpath dotpath.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o dottup dottup.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/descseq descseq.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/diffseq diffseq.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/distmat distmat.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/degapseq degapseq.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/density density.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/dotmatcher dotmatcher.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/dotpath dotpath.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/dottup dottup.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o dreg dreg.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o drfinddata drfinddata.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o drfindformat drfindformat.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o drfindid drfindid.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o drfindresource drfindresource.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o drget drget.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o drtext drtext.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o edamdef edamdef.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/dreg dreg.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/drfindid drfindid.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/drfindformat drfindformat.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/drget drget.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/drfinddata drfinddata.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/drfindresource drfindresource.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/drtext drtext.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o edamhasinput edamhasinput.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o edamhasoutput edamhasoutput.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o edamisformat edamisformat.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o edamisid edamisid.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/edamdef edamdef.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o edamname edamname.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o edialign edialign.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o einverted einverted.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o embossdata embossdata.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/edamisid edamisid.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/edamhasinput edamhasinput.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/edamisformat edamisformat.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/edialign edialign.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/edamhasoutput edamhasoutput.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/edamname edamname.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/einverted einverted.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o embossupdate embossupdate.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o embossversion embossversion.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o emma emma.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o emowse emowse.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o entret entret.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o epestfind epestfind.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/embossdata embossdata.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o eprimer3 eprimer3.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o eprimer32 eprimer32.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/emma emma.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/entret entret.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/embossversion embossversion.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/embossupdate embossupdate.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/epestfind epestfind.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/emowse emowse.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/eprimer3 eprimer3.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o equicktandem equicktandem.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o est2genome est2genome.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o etandem etandem.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o extractalign extractalign.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o extractfeat extractfeat.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/eprimer32 eprimer32.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o extractseq extractseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o featcopy featcopy.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o featmerge featmerge.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/equicktandem equicktandem.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/etandem etandem.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/est2genome est2genome.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/extractfeat extractfeat.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/extractalign extractalign.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/extractseq extractseq.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o featreport featreport.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o feattext feattext.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o findkm findkm.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o freak freak.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o fuzznuc fuzznuc.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/featcopy featcopy.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o fuzzpro fuzzpro.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/featmerge featmerge.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o fuzztran fuzztran.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o garnier garnier.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/feattext feattext.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/freak freak.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/featreport featreport.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/findkm findkm.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/fuzznuc fuzznuc.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: clang: warning: argument unused during compilation: '-pthread'argument unused during compilation: '-pthread'

clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/fuzzpro fuzzpro.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o geecee geecee.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o getorf getorf.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o godef godef.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o goname goname.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o helixturnhelix helixturnhelix.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/fuzztran fuzztran.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o hmoment hmoment.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/garnier garnier.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o iep iep.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o infoalign infoalign.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/geecee geecee.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/getorf getorf.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/godef godef.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/goname goname.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/helixturnhelix helixturnhelix.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/hmoment hmoment.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o infoassembly infoassembly.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o infobase infobase.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o inforesidue inforesidue.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o infoseq infoseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o isochore isochore.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o jaspextract jaspextract.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/infoalign infoalign.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/iep iep.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o jaspscan jaspscan.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o jembossctl jembossctl.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/inforesidue inforesidue.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/infoassembly infoassembly.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/infobase infobase.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/infoseq infoseq.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/isochore isochore.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/jaspextract jaspextract.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o lindna lindna.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o listor listor.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o makenucseq makenucseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o makeprotseq makeprotseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o marscan marscan.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o maskambignuc maskambignuc.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/jaspscan jaspscan.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/jembossctl jembossctl.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o maskambigprot maskambigprot.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o maskfeat maskfeat.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/lindna lindna.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/listor listor.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/makenucseq makenucseq.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/maskambignuc maskambignuc.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/marscan marscan.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/makeprotseq makeprotseq.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: clangargument unused during compilation: '-pthread': 
warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o maskseq maskseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o matcher matcher.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o megamerger megamerger.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o merger merger.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o msbar msbar.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o mwcontam mwcontam.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/maskambigprot maskambigprot.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/maskfeat maskfeat.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o mwfilter mwfilter.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o needle needle.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/maskseq maskseq.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/megamerger megamerger.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/matcher matcher.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/merger merger.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: clang: warning: warning: argument unused during compilation: '-pthread'argument unused during compilation: '-pthread'

clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/msbar msbar.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/mwcontam mwcontam.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: clang: warning: warning: argument unused during compilation: '-pthread'argument unused during compilation: '-pthread'

/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o needleall needleall.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o newcpgreport newcpgreport.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o newcpgseek newcpgseek.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o newseq newseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o nohtml nohtml.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o noreturn noreturn.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/mwfilter mwfilter.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/needle needle.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o nospace nospace.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o notab notab.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/newcpgreport newcpgreport.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/needleall needleall.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/newcpgseek newcpgseek.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/newseq newseq.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/nohtml nohtml.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/noreturn noreturn.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o notseq notseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o nthseq nthseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o nthseqset nthseqset.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o octanol octanol.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o oddcomp oddcomp.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o ontocount ontocount.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/nospace nospace.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/notab notab.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o ontoget ontoget.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o ontogetcommon ontogetcommon.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/notseq notseq.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/nthseq nthseq.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/octanol octanol.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/nthseqset nthseqset.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/oddcomp oddcomp.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o ontogetdown ontogetdown.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/ontocount ontocount.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o ontogetobsolete ontogetobsolete.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o ontogetroot ontogetroot.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o ontogetsibs ontogetsibs.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o ontogetup ontogetup.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o ontoisobsolete ontoisobsolete.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/ontoget ontoget.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/ontogetcommon ontogetcommon.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o ontotext ontotext.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o palindrome palindrome.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/ontogetobsolete ontogetobsolete.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/ontogetdown ontogetdown.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/ontogetroot ontogetroot.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/ontogetsibs ontogetsibs.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/ontogetup ontogetup.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/ontoisobsolete ontoisobsolete.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o pasteseq pasteseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o patmatmotifs patmatmotifs.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o patmatdb patmatdb.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o pepcoil pepcoil.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o pepdigest pepdigest.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o pepinfo pepinfo.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/ontotext ontotext.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/palindrome palindrome.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o pepnet pepnet.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o pepstats pepstats.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/pasteseq pasteseq.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/pepcoil pepcoil.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/patmatmotifs patmatmotifs.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/patmatdb patmatdb.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clangclang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/pepdigest pepdigest.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/pepinfo pepinfo.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o pepwheel pepwheel.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o pepwindow pepwindow.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o pepwindowall pepwindowall.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o plotcon plotcon.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o plotorf plotorf.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o polydot polydot.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/pepnet pepnet.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/pepstats pepstats.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o preg preg.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o prettyplot prettyplot.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/pepwindowall pepwindowall.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/pepwindow pepwindow.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/pepwheel pepwheel.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/plotcon plotcon.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/plotorf plotorf.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/polydot polydot.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o prettyseq prettyseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o primersearch primersearch.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o printsextract printsextract.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o profit profit.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o prophecy prophecy.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o prophet prophet.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/preg preg.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/prettyplot prettyplot.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o prosextract prosextract.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o pscan pscan.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/prettyseq prettyseq.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/primersearch primersearch.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/profit profit.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/prophecy prophecy.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/printsextract printsextract.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/prophet prophet.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o psiphi psiphi.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o rebaseextract rebaseextract.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o recoder recoder.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o redata redata.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o refseqget refseqget.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o remap remap.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/prosextract prosextract.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/pscan pscan.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o restover restover.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o restrict restrict.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/psiphi psiphi.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/recoder recoder.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/rebaseextract rebaseextract.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/refseqget refseqget.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/redata redata.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/remap remap.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o revseq revseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o seealso seealso.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o seqcount seqcount.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o seqmatchall seqmatchall.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o seqret seqret.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o seqretsetall seqretsetall.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/restover restover.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/restrict restrict.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o seqretsplit seqretsplit.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o seqxref seqxref.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/revseq revseq.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/seealso seealso.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/seqcount seqcount.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/seqret seqret.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/seqmatchall seqmatchall.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/seqretsetall seqretsetall.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o seqxrefget seqxrefget.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o servertell servertell.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o showalign showalign.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o showdb showdb.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o showfeat showfeat.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o showorf showorf.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/seqretsplit seqretsplit.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/seqxref seqxref.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o showpep showpep.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o showseq showseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/seqxrefget seqxrefget.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/servertell servertell.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/showdb showdb.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/showfeat showfeat.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/showalign showalign.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/showorf showorf.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o showserver showserver.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o shuffleseq shuffleseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o sigcleave sigcleave.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o silent silent.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o sirna sirna.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o sixpack sixpack.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/showpep showpep.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/showseq showseq.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o sizeseq sizeseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o skipredundant skipredundant.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/showserver showserver.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/silent silent.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/sirna sirna.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/shuffleseq shuffleseq.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/sigcleave sigcleave.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o skipseq skipseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o splitsource splitsource.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/sixpack sixpack.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o splitter splitter.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o stretcher stretcher.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o stssearch stssearch.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o supermatcher supermatcher.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/sizeseq sizeseq.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/skipredundant skipredundant.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o syco syco.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o taxget taxget.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/skipseq skipseq.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/splitsource splitsource.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/splitter splitter.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/stretcher stretcher.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/stssearch stssearch.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o taxgetdown taxgetdown.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o taxgetrank taxgetrank.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o taxgetspecies taxgetspecies.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o taxgetup taxgetup.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/supermatcher supermatcher.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o tcode tcode.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o textget textget.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/syco syco.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/taxget taxget.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o textsearch textsearch.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o tfextract tfextract.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/taxgetrank taxgetrank.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/taxgetdown taxgetdown.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/taxgetup taxgetup.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/taxgetspecies taxgetspecies.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/tcode tcode.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o tfm tfm.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o tfscan tfscan.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o tmap tmap.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o tranalign tranalign.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/textget textget.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o transeq transeq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o trimest trimest.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/textsearch textsearch.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/tfextract tfextract.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o trimseq trimseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o trimspace trimspace.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/tfm tfm.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/tfscan tfscan.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/tmap tmap.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/tranalign tranalign.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/transeq transeq.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o twofeat twofeat.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o union union.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o urlget urlget.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o variationget variationget.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/trimest trimest.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o vectorstrip vectorstrip.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o water water.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/trimseq trimseq.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/trimspace trimspace.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o whichdb whichdb.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o wobble wobble.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/twofeat twofeat.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/union union.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/variationget variationget.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/urlget urlget.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/vectorstrip vectorstrip.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o wordcount wordcount.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o wordfinder wordfinder.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o wordmatch wordmatch.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o wossdata wossdata.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o wossinput wossinput.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/water water.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o wossname wossname.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/whichdb whichdb.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/wobble wobble.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o wossoperation wossoperation.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o wossoutput wossoutput.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/wordcount wordcount.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/wordmatch wordmatch.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/wordfinder wordfinder.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/wossdata wossdata.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/wossinput wossinput.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o wossparam wossparam.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o wosstopic wosstopic.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
clang: warning: argument unused during compilation: '-pthread'
/bin/sh ../libtool --tag=CC   --mode=link gcc    -O2  -L/sw/lib -o yank yank.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la   -lm  -lhpdf -lgd -lpng -lz -lm
libtool: link: gcc -O2 -o .libs/wossname wossname.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/wossoperation wossoperation.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/wossoutput wossoutput.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
libtool: link: gcc -O2 -o .libs/wossparam wossparam.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/wosstopic wosstopic.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
libtool: link: gcc -O2 -o .libs/yank yank.o  -L/sw/lib ../nucleus/.libs/libnucleus.dylib -L/sw/lib/mysql -L/sw/opt/postgresql-9.2/lib -L/sw/lib/plplot /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/.libs/libacd.dylib ../ajax/acd/.libs/libacd.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/.libs/libajaxdb.dylib ../ajax/ajaxdb/.libs/libajaxdb.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/.libs/libensembl.dylib ../ajax/ensembl/.libs/libensembl.dylib ../ajax/graphics/.libs/libajaxg.dylib /sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/.libs/libajax.dylib -lplplotd ../ajax/core/.libs/libajax.dylib /sw/lib/libexpat.dylib /sw/lib/libpcre1/libpcre.dylib -lpq /sw/lib/mysql/libmysqlclient.dylib /sw/lib/libhpdf.dylib /sw/lib/libgd.dylib /sw/lib/libpng16.dylib -lz -lm -pthread
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
clang: warning: argument unused during compilation: '-pthread'
Making all in test
Making all in data
make[2]: Nothing to be done for `all'.
Making all in embl
make[2]: Nothing to be done for `all'.
Making all in genbank
make[2]: Nothing to be done for `all'.
Making all in pir
make[2]: Nothing to be done for `all'.
Making all in swiss
make[2]: Nothing to be done for `all'.
Making all in swnew
make[2]: Nothing to be done for `all'.
Making all in testdb
make[2]: Nothing to be done for `all'.
make[2]: Nothing to be done for `all-am'.
Making all in doc
Making all in manuals
make[2]: Nothing to be done for `all'.
Making all in programs
Making all in html
make[3]: Nothing to be done for `all'.
Making all in text
make[3]: Nothing to be done for `all'.
make[3]: Nothing to be done for `all-am'.
Making all in tutorials
make[2]: Nothing to be done for `all'.
make[2]: Nothing to be done for `all-am'.
Making all in jemboss
Making all in images
make[2]: Nothing to be done for `all'.
Making all in lib
Making all in axis
make[3]: Nothing to be done for `all'.
make[3]: Nothing to be done for `all-am'.
Making all in resources
make[2]: Nothing to be done for `all'.
Making all in utils
make[2]: Nothing to be done for `all'.
make[2]: Nothing to be done for `all-am'.
make[1]: Nothing to be done for `all-am'.
	fink-package-precedence \
		--prohibit-bdep=emboss-libajax6-dev,emboss-libnucleus6-dev \
		--prohibit-bdep=emboss-ajax6-dev,emboss-nucleus6-dev,emboss-plplot3-dev,emboss-plplot6-dev \
		.
Scanning /\.Plo,\.Po$/ dependency files...
	./ajax/acd/.deps/libacd_la-ajacd.Plo
	./ajax/ajaxdb/.deps/libajaxdb_la-ajassemdb.Plo
	./ajax/ajaxdb/.deps/libajaxdb_la-ajdas.Plo
	./ajax/ajaxdb/.deps/libajaxdb_la-ajfeatdb.Plo
	./ajax/ajaxdb/.deps/libajaxdb_la-ajmart.Plo
	./ajax/ajaxdb/.deps/libajaxdb_la-ajobodb.Plo
	./ajax/ajaxdb/.deps/libajaxdb_la-ajrefseqdb.Plo
	./ajax/ajaxdb/.deps/libajaxdb_la-ajresourcedb.Plo
	./ajax/ajaxdb/.deps/libajaxdb_la-ajseqdb.Plo
	./ajax/ajaxdb/.deps/libajaxdb_la-ajsoap.Plo
	./ajax/ajaxdb/.deps/libajaxdb_la-ajtaxdb.Plo
	./ajax/ajaxdb/.deps/libajaxdb_la-ajtextdb.Plo
	./ajax/ajaxdb/.deps/libajaxdb_la-ajurldb.Plo
	./ajax/ajaxdb/.deps/libajaxdb_la-ajvardb.Plo
	./ajax/core/.deps/libajax_la-ajalign.Plo
	./ajax/core/.deps/libajax_la-ajarr.Plo
	./ajax/core/.deps/libajax_la-ajassem.Plo
	./ajax/core/.deps/libajax_la-ajassemread.Plo
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	./ajax/core/.deps/libajax_la-ajassert.Plo
	./ajax/core/.deps/libajax_la-ajbamindex.Plo
	./ajax/core/.deps/libajax_la-ajbase.Plo
	./ajax/core/.deps/libajax_la-ajcall.Plo
	./ajax/core/.deps/libajax_la-ajcigar.Plo
	./ajax/core/.deps/libajax_la-ajcod.Plo
	./ajax/core/.deps/libajax_la-ajdan.Plo
	./ajax/core/.deps/libajax_la-ajdmx.Plo
	./ajax/core/.deps/libajax_la-ajdom.Plo
	./ajax/core/.deps/libajax_la-ajdomain.Plo
	./ajax/core/.deps/libajax_la-ajexcept.Plo
	./ajax/core/.deps/libajax_la-ajfeat.Plo
	./ajax/core/.deps/libajax_la-ajfeatread.Plo
	./ajax/core/.deps/libajax_la-ajfeatwrite.Plo
	./ajax/core/.deps/libajax_la-ajfile.Plo
	./ajax/core/.deps/libajax_la-ajfiledata.Plo
	./ajax/core/.deps/libajax_la-ajfileio.Plo
	./ajax/core/.deps/libajax_la-ajfmt.Plo
	./ajax/core/.deps/libajax_la-ajftp.Plo
	./ajax/core/.deps/libajax_la-ajhttp.Plo
	./ajax/core/.deps/libajax_la-ajindex.Plo
	./ajax/core/.deps/libajax_la-ajjava.Plo
	./ajax/core/.deps/libajax_la-ajlist.Plo
	./ajax/core/.deps/libajax_la-ajmath.Plo
	./ajax/core/.deps/libajax_la-ajmatrices.Plo
	./ajax/core/.deps/libajax_la-ajmem.Plo
	./ajax/core/.deps/libajax_la-ajmess.Plo
	./ajax/core/.deps/libajax_la-ajnam.Plo
	./ajax/core/.deps/libajax_la-ajnexus.Plo
	./ajax/core/.deps/libajax_la-ajobo.Plo
	./ajax/core/.deps/libajax_la-ajoboread.Plo
	./ajax/core/.deps/libajax_la-ajobowrite.Plo
	./ajax/core/.deps/libajax_la-ajpat.Plo
	./ajax/core/.deps/libajax_la-ajpdb.Plo
	./ajax/core/.deps/libajax_la-ajpdbio.Plo
	./ajax/core/.deps/libajax_la-ajphylo.Plo
	./ajax/core/.deps/libajax_la-ajquery.Plo
	./ajax/core/.deps/libajax_la-ajrange.Plo
	./ajax/core/.deps/libajax_la-ajrefseq.Plo
	./ajax/core/.deps/libajax_la-ajrefseqread.Plo
	./ajax/core/.deps/libajax_la-ajrefseqwrite.Plo
	./ajax/core/.deps/libajax_la-ajreg.Plo
	./ajax/core/.deps/libajax_la-ajreport.Plo
	./ajax/core/.deps/libajax_la-ajresource.Plo
	./ajax/core/.deps/libajax_la-ajresourceread.Plo
	./ajax/core/.deps/libajax_la-ajresourcewrite.Plo
	./ajax/core/.deps/libajax_la-ajseq.Plo
	./ajax/core/.deps/libajax_la-ajseqabi.Plo
	./ajax/core/.deps/libajax_la-ajseqbam.Plo
	./ajax/core/.deps/libajax_la-ajseqread.Plo
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	./ajax/core/.deps/libajax_la-ajsql.Plo
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	./ajax/core/.deps/libajax_la-ajtagval.Plo
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	./ajax/core/.deps/libajax_la-ajtext.Plo
	./ajax/core/.deps/libajax_la-ajtextread.Plo
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	./ajax/core/.deps/libajax_la-ajtime.Plo
	./ajax/core/.deps/libajax_la-ajtranslate.Plo
	./ajax/core/.deps/libajax_la-ajtree.Plo
	./ajax/core/.deps/libajax_la-ajurl.Plo
	./ajax/core/.deps/libajax_la-ajurlread.Plo
	./ajax/core/.deps/libajax_la-ajurlwrite.Plo
	./ajax/core/.deps/libajax_la-ajutil.Plo
	./ajax/core/.deps/libajax_la-ajvar.Plo
	./ajax/core/.deps/libajax_la-ajvarbcf.Plo
	./ajax/core/.deps/libajax_la-ajvarread.Plo
	./ajax/core/.deps/libajax_la-ajvarwrite.Plo
	./ajax/core/.deps/libajax_la-ajvector.Plo
	./ajax/ensembl/.deps/libensembl_la-ensalign.Plo
	./ajax/ensembl/.deps/libensembl_la-ensanalysis.Plo
	./ajax/ensembl/.deps/libensembl_la-ensassembly.Plo
	./ajax/ensembl/.deps/libensembl_la-ensassemblyexception.Plo
	./ajax/ensembl/.deps/libensembl_la-ensassemblymapper.Plo
	./ajax/ensembl/.deps/libensembl_la-ensattribute.Plo
	./ajax/ensembl/.deps/libensembl_la-ensbaseadaptor.Plo
	./ajax/ensembl/.deps/libensembl_la-enscache.Plo
	./ajax/ensembl/.deps/libensembl_la-enscoordsystem.Plo
	./ajax/ensembl/.deps/libensembl_la-ensdatabaseadaptor.Plo
	./ajax/ensembl/.deps/libensembl_la-ensdatabaseconnection.Plo
	./ajax/ensembl/.deps/libensembl_la-ensdatabaseentry.Plo
	./ajax/ensembl/.deps/libensembl_la-ensdensity.Plo
	./ajax/ensembl/.deps/libensembl_la-ensditag.Plo
	./ajax/ensembl/.deps/libensembl_la-ensexon.Plo
	./ajax/ensembl/.deps/libensembl_la-ensexternaldatabase.Plo
	./ajax/ensembl/.deps/libensembl_la-ensfeature.Plo
	./ajax/ensembl/.deps/libensembl_la-ensgene.Plo
	./ajax/ensembl/.deps/libensembl_la-ensgvallele.Plo
	./ajax/ensembl/.deps/libensembl_la-ensgvattribute.Plo
	./ajax/ensembl/.deps/libensembl_la-ensgvbaseadaptor.Plo
	./ajax/ensembl/.deps/libensembl_la-ensgvdatabaseadaptor.Plo
	./ajax/ensembl/.deps/libensembl_la-ensgvgenotype.Plo
	./ajax/ensembl/.deps/libensembl_la-ensgvindividual.Plo
	./ajax/ensembl/.deps/libensembl_la-ensgvpopulation.Plo
	./ajax/ensembl/.deps/libensembl_la-ensgvsample.Plo
	./ajax/ensembl/.deps/libensembl_la-ensgvsource.Plo
	./ajax/ensembl/.deps/libensembl_la-ensgvsynonym.Plo
	./ajax/ensembl/.deps/libensembl_la-ensgvvariation.Plo
	./ajax/ensembl/.deps/libensembl_la-ensintron.Plo
	./ajax/ensembl/.deps/libensembl_la-enskaryotype.Plo
	./ajax/ensembl/.deps/libensembl_la-ensmapper.Plo
	./ajax/ensembl/.deps/libensembl_la-ensmarker.Plo
	./ajax/ensembl/.deps/libensembl_la-ensmetacoordinate.Plo
	./ajax/ensembl/.deps/libensembl_la-ensmetainformation.Plo
	./ajax/ensembl/.deps/libensembl_la-ensmiscellaneous.Plo
	./ajax/ensembl/.deps/libensembl_la-ensontology.Plo
	./ajax/ensembl/.deps/libensembl_la-ensprediction.Plo
	./ajax/ensembl/.deps/libensembl_la-ensprojectionsegment.Plo
	./ajax/ensembl/.deps/libensembl_la-ensprotein.Plo
	./ajax/ensembl/.deps/libensembl_la-ensqc.Plo
	./ajax/ensembl/.deps/libensembl_la-ensqcalignment.Plo
	./ajax/ensembl/.deps/libensembl_la-ensqcdasfeature.Plo
	./ajax/ensembl/.deps/libensembl_la-ensqcdatabase.Plo
	./ajax/ensembl/.deps/libensembl_la-ensqcsequence.Plo
	./ajax/ensembl/.deps/libensembl_la-ensqcsubmission.Plo
	./ajax/ensembl/.deps/libensembl_la-ensqcvariation.Plo
	./ajax/ensembl/.deps/libensembl_la-ensregistry.Plo
	./ajax/ensembl/.deps/libensembl_la-ensrepeat.Plo
	./ajax/ensembl/.deps/libensembl_la-ensseqregion.Plo
	./ajax/ensembl/.deps/libensembl_la-enssequence.Plo
	./ajax/ensembl/.deps/libensembl_la-enssequenceedit.Plo
	./ajax/ensembl/.deps/libensembl_la-enssimple.Plo
	./ajax/ensembl/.deps/libensembl_la-ensslice.Plo
	./ajax/ensembl/.deps/libensembl_la-enssoftware.Plo
	./ajax/ensembl/.deps/libensembl_la-ensstorable.Plo
	./ajax/ensembl/.deps/libensembl_la-enstable.Plo
	./ajax/ensembl/.deps/libensembl_la-enstranscript.Plo
	./ajax/ensembl/.deps/libensembl_la-enstranslation.Plo
	./ajax/ensembl/.deps/libensembl_la-ensutility.Plo
	./ajax/ensembl/.deps/libensembl_la-ensvariation.Plo
	./ajax/expat/.deps/xmlparse.Plo
	./ajax/expat/.deps/xmlrole.Plo
	./ajax/expat/.deps/xmltok.Plo
	./ajax/expat/.deps/xmltok_impl.Plo
	./ajax/expat/.deps/xmltok_ns.Plo
	./ajax/graphics/.deps/libajaxg_la-ajgraph.Plo
	./ajax/graphics/.deps/libajaxg_la-ajhist.Plo
	./ajax/pcre/.deps/libepcre_la-pcre_chartables.Plo
	./ajax/pcre/.deps/libepcre_la-pcre_compile.Plo
	./ajax/pcre/.deps/libepcre_la-pcre_dfa_exec.Plo
	./ajax/pcre/.deps/libepcre_la-pcre_exec.Plo
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Looking for incorrect headers in 557 dependency files...
Determining fink providers of 22 headers...
	1 - 22
Found use of headers from 5 fink packages:
	expat1
	libpcre1
	libplplot10-dev
	mysql-unified-dev
	postgresql92-dev
Scanning binaries for incorrect dyld linking...
/bin/rm -rf /sw/build.build/root-emboss-6.5.7-105
/bin/mkdir -p /sw/build.build/root-emboss-6.5.7-105/sw
/bin/mkdir -p /sw/build.build/root-emboss-6.5.7-105/DEBIAN
/usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-emboss-6.5.7-105
sudo -u fink-bld [ENV] sh -c /tmp/fink.4uUbI
make install DESTDIR=/sw/build.build/root-emboss-6.5.7-105
Making install in ajax
Making install in core
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib'
 /bin/sh ../../libtool   --mode=install /usr/bin/install -c   libajax.la '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/libajax.6.dylib /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib/libajax.6.dylib
libtool: install: (cd /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib && { ln -s -f libajax.6.dylib libajax.dylib || { rm -f libajax.dylib && ln -s libajax.6.dylib libajax.dylib; }; })
libtool: install: /usr/bin/install -c .libs/libajax.lai /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib/libajax.la
libtool: install: warning: remember to run `libtool --finish /sw/lib/EMBOSS/lib'
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/include'
 /usr/bin/install -c -m 644 ajax.h ajarch.h ajdefine.h ajalign.h ajarr.h ajassem.h ajassemdata.h ajassemread.h ajassemwrite.h ajassert.h ajbamindex.h ajbase.h ajcall.h ajcigar.h ajcod.h ajdan.h ajdmx.h ajdom.h ajdomain.h ajexcept.h ajfeat.h ajfeatdata.h ajfeatread.h ajfeatwrite.h ajfile.h ajfiledata.h ajfileio.h ajfmt.h ajftp.h ajhttp.h ajindex.h ajjava.h ajlib.h ajlist.h ajmath.h ajmatrices.h ajmem.h ajmess.h ajnam.h ajnexus.h '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/include'
 /usr/bin/install -c -m 644 ajobo.h ajobodata.h ajoboread.h ajobowrite.h ajpat.h ajpdb.h ajpdbio.h ajphylo.h ajquery.h ajquerydata.h ajrange.h ajreg.h ajax-pcre-config.h ajreport.h ajrefseq.h ajrefseqdata.h ajrefseqread.h ajrefseqwrite.h ajresource.h ajresourcedata.h ajresourceread.h ajresourcewrite.h ajseq.h ajseqabi.h ajseqbam.h ajseqdata.h ajseqread.h ajseqtype.h ajseqwrite.h ajsort.h ajsql.h ajstr.h ajsys.h ajtable.h ajtagval.h ajtax.h ajtaxdata.h ajtaxread.h ajtaxwrite.h ajtext.h '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/include'
 /usr/bin/install -c -m 644 ajtextdata.h ajtextread.h ajtextwrite.h ajtime.h ajtranslate.h ajtree.h ajurl.h ajurldata.h ajurlread.h ajurlwrite.h ajutil.h ajvar.h ajvarbcf.h ajvardata.h ajvarread.h ajvarwrite.h ajvector.h '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/include'
Making install in graphics
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib'
 /bin/sh ../../libtool   --mode=install /usr/bin/install -c   libajaxg.la '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/libajaxg.6.dylib /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib/libajaxg.6.dylib
libtool: install: (cd /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib && { ln -s -f libajaxg.6.dylib libajaxg.dylib || { rm -f libajaxg.dylib && ln -s libajaxg.6.dylib libajaxg.dylib; }; })
libtool: install: /usr/bin/install -c .libs/libajaxg.lai /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib/libajaxg.la
libtool: install: warning: remember to run `libtool --finish /sw/lib/EMBOSS/lib'
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/include'
 /usr/bin/install -c -m 644 ajgraph.h ajgraphstruct.h ajhist.h '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/include'
Making install in ensembl
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib'
 /bin/sh ../../libtool   --mode=install /usr/bin/install -c   libensembl.la '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/libensembl.6.dylib /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib/libensembl.6.dylib
libtool: install: (cd /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib && { ln -s -f libensembl.6.dylib libensembl.dylib || { rm -f libensembl.dylib && ln -s libensembl.6.dylib libensembl.dylib; }; })
libtool: install: /usr/bin/install -c .libs/libensembl.lai /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib/libensembl.la
libtool: install: warning: remember to run `libtool --finish /sw/lib/EMBOSS/lib'
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/include'
 /usr/bin/install -c -m 644 ensalign.h ensanalysis.h ensassemblyexception.h ensassembly.h ensassemblymapper.h ensattribute.h ensbaseadaptor.h enscache.h enscoordsystem.h ensdatabaseadaptor.h ensdatabaseconnection.h ensdatabaseentry.h ensdata.h ensdensity.h ensditag.h ensembl.h ensexon.h ensexternaldatabase.h ensfeature.h ensgene.h ensgvallele.h ensgvattribute.h ensgvbaseadaptor.h ensgvdata.h ensgvdatabaseadaptor.h ensgvgenotype.h ensgvindividual.h ensgvpopulation.h ensgvsample.h ensgvsource.h ensgvsynonym.h ensgvvariation.h ensintron.h enskaryotype.h ensmapper.h ensmarker.h ensmetacoordinate.h ensmetainformation.h ensmiscellaneous.h ensontology.h '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/include'
 /usr/bin/install -c -m 644 ensprediction.h ensprojectionsegment.h ensprotein.h ensqc.h ensqcalignment.h ensqcdasfeature.h ensqcdatabase.h ensqcsequence.h ensqcsubmission.h ensqcvariation.h ensregistry.h ensrepeat.h ensseqregion.h enssequenceedit.h enssequence.h enssimple.h ensslice.h enssoftware.h ensstorable.h enstable.h enstranscript.h enstranslation.h ensutility.h ensvariation.h '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/include'
Making install in ajaxdb
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib'
 /bin/sh ../../libtool   --mode=install /usr/bin/install -c   libajaxdb.la '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/libajaxdb.6.dylib /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib/libajaxdb.6.dylib
libtool: install: (cd /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib && { ln -s -f libajaxdb.6.dylib libajaxdb.dylib || { rm -f libajaxdb.dylib && ln -s libajaxdb.6.dylib libajaxdb.dylib; }; })
libtool: install: /usr/bin/install -c .libs/libajaxdb.lai /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib/libajaxdb.la
libtool: install: warning: remember to run `libtool --finish /sw/lib/EMBOSS/lib'
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/include'
 /usr/bin/install -c -m 644 ajassemdb.h ajdas.h ajfeatdb.h ajmart.h ajobodb.h ajrefseqdb.h ajresourcedb.h ajseqdb.h ajsoap.h ajtaxdb.h ajtextdb.h ajurldb.h ajvardb.h '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/include'
Making install in acd
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib'
 /bin/sh ../../libtool   --mode=install /usr/bin/install -c   libacd.la '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/libacd.6.dylib /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib/libacd.6.dylib
libtool: install: (cd /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib && { ln -s -f libacd.6.dylib libacd.dylib || { rm -f libacd.dylib && ln -s libacd.6.dylib libacd.dylib; }; })
libtool: install: /usr/bin/install -c .libs/libacd.lai /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib/libacd.la
libtool: install: warning: remember to run `libtool --finish /sw/lib/EMBOSS/lib'
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/include'
 /usr/bin/install -c -m 644 ajacd.h '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/include'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
Making install in nucleus
 .././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib'
 /bin/sh ../libtool   --mode=install /usr/bin/install -c   libnucleus.la '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/libnucleus.6.dylib /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib/libnucleus.6.dylib
libtool: install: (cd /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib && { ln -s -f libnucleus.6.dylib libnucleus.dylib || { rm -f libnucleus.dylib && ln -s libnucleus.6.dylib libnucleus.dylib; }; })
libtool: install: /usr/bin/install -c .libs/libnucleus.lai /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib/libnucleus.la
libtool: install: warning: remember to run `libtool --finish /sw/lib/EMBOSS/lib'
 .././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/include'
 /usr/bin/install -c -m 644 emboss.h embaln.h embcom.h embcons.h embdata.h embdbi.h embdmx.h embdomain.h embest.h embexit.h embgroup.h embiep.h embindex.h embinit.h embmat.h embmisc.h embmol.h embnmer.h embpat.h embpatlist.h embprop.h embpdb.h embread.h embsig.h embshow.h embword.h '/sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/include'
Making install in emboss
Making install in acd
make[3]: Nothing to be done for `install-exec-am'.
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/acd'
 /usr/bin/install -c -m 644 aaindexextract.acd abiview.acd acdc.acd acdpretty.acd acdtable.acd acdtrace.acd acdvalid.acd aligncopy.acd aligncopypair.acd antigenic.acd assemblyget.acd backtranambig.acd backtranseq.acd banana.acd biosed.acd btwisted.acd cachedas.acd cachedbfetch.acd cacheebeyesearch.acd cacheensembl.acd cai.acd chaos.acd charge.acd checktrans.acd chips.acd cirdna.acd codcmp.acd codcopy.acd coderet.acd compseq.acd cons.acd consambig.acd cpgplot.acd cpgreport.acd cusp.acd cutgextract.acd cutseq.acd dan.acd dbiblast.acd dbifasta.acd '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/acd'
 /usr/bin/install -c -m 644 dbiflat.acd dbigcg.acd dbtell.acd dbxcompress.acd dbxedam.acd dbxfasta.acd dbxflat.acd dbxgcg.acd dbxobo.acd dbxreport.acd dbxresource.acd dbxstat.acd dbxtax.acd dbxuncompress.acd degapseq.acd density.acd descseq.acd diffseq.acd digest.acd distmat.acd dotmatcher.acd dotpath.acd dottup.acd dreg.acd drfinddata.acd drfindformat.acd drfindid.acd drfindresource.acd drget.acd drtext.acd edamdef.acd edamhasinput.acd edamhasoutput.acd edamisformat.acd edamisid.acd edamname.acd edialign.acd einverted.acd embossdata.acd embossupdate.acd '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/acd'
 /usr/bin/install -c -m 644 embossversion.acd emma.acd emowse.acd entret.acd epestfind.acd eprimer3.acd eprimer32.acd equicktandem.acd est2genome.acd etandem.acd extractalign.acd extractfeat.acd extractseq.acd featcopy.acd featmerge.acd featreport.acd feattext.acd findkm.acd freak.acd fuzznuc.acd fuzzpro.acd fuzztran.acd garnier.acd geecee.acd getorf.acd godef.acd goname.acd helixturnhelix.acd hmoment.acd iep.acd infoalign.acd infoassembly.acd infobase.acd inforesidue.acd infoseq.acd isochore.acd jaspextract.acd jaspscan.acd lindna.acd listor.acd '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/acd'
 /usr/bin/install -c -m 644 makenucseq.acd makeprotseq.acd marscan.acd maskambignuc.acd maskambigprot.acd maskfeat.acd maskseq.acd matcher.acd megamerger.acd merger.acd msbar.acd mwcontam.acd mwfilter.acd needle.acd needleall.acd newcpgreport.acd newcpgseek.acd newseq.acd nohtml.acd noreturn.acd nospace.acd notab.acd notseq.acd nthseq.acd nthseqset.acd octanol.acd oddcomp.acd ontocount.acd ontoget.acd ontogetcommon.acd ontogetdown.acd ontogetobsolete.acd ontogetroot.acd ontogetsibs.acd ontogetup.acd ontoisobsolete.acd ontotext.acd palindrome.acd pasteseq.acd patmatdb.acd '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/acd'
 /usr/bin/install -c -m 644 patmatmotifs.acd pepcoil.acd pepdigest.acd pepinfo.acd pepnet.acd pepstats.acd pepwheel.acd pepwindow.acd pepwindowall.acd plotcon.acd plotorf.acd polydot.acd preg.acd prettyplot.acd prettyseq.acd primersearch.acd printsextract.acd profit.acd prophecy.acd prophet.acd prosextract.acd pscan.acd psiphi.acd rebaseextract.acd recoder.acd redata.acd refseqget.acd remap.acd restover.acd restrict.acd revseq.acd seealso.acd seqcount.acd seqmatchall.acd seqret.acd seqretsetall.acd seqretsplit.acd seqxref.acd seqxrefget.acd servertell.acd '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/acd'
 /usr/bin/install -c -m 644 showalign.acd showdb.acd showfeat.acd showorf.acd showpep.acd showseq.acd showserver.acd shuffleseq.acd sigcleave.acd silent.acd sirna.acd sixpack.acd sizeseq.acd skipredundant.acd skipseq.acd splitsource.acd splitter.acd stretcher.acd stssearch.acd supermatcher.acd syco.acd taxget.acd taxgetdown.acd taxgetrank.acd taxgetspecies.acd taxgetup.acd tcode.acd textget.acd textsearch.acd tfextract.acd tfm.acd tfscan.acd tmap.acd tranalign.acd transeq.acd trimest.acd trimseq.acd trimspace.acd twofeat.acd union.acd '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/acd'
 /usr/bin/install -c -m 644 urlget.acd variationget.acd vectorstrip.acd water.acd whichdb.acd wobble.acd wordcount.acd wordfinder.acd wordmatch.acd wossdata.acd wossinput.acd wossname.acd wossoperation.acd wossoutput.acd wossparam.acd wosstopic.acd yank.acd '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/acd'
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/acd'
 /usr/bin/install -c -m 644 codes.english groups.standard keywords.standard knowntypes.standard sections.standard variables.standard '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/acd'
Making install in data
Making install in AAINDEX
make[4]: Nothing to be done for `install-exec-am'.
 ../../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/AAINDEX'
 /usr/bin/install -c -m 644 dummyfile '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/AAINDEX'
Making install in CODONS
make[4]: Nothing to be done for `install-exec-am'.
 ../../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/CODONS'
 /usr/bin/install -c -m 644 Cut.index Eacica.cut Eagrtu.cut Eanasp.cut Earath.cut Eazovi.cut Ebacme.cut Ebacst.cut Ebacsu.cut Ebacsu_high.cut Ebommo.cut Ebovin.cut Ebpphx.cut Ebraja.cut Ebrana.cut Ebrare.cut Ecaeel.cut Ecanal.cut Ecanfa.cut Ecaucr.cut Echick.cut Echlre.cut Echltr.cut Ecloab.cut Ecrigr.cut Ecyapa.cut Edayhoff.cut Edicdi.cut Edicdi_high.cut Edrome.cut Edrome_high.cut Eecoli.cut Eecoli_high.cut Eemeni.cut Eemeni_mit.cut Eemeni_high.cut Eerwct.cut Ehaein.cut Ehalma.cut Ehalsa.cut '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/CODONS'
 /usr/bin/install -c -m 644 Ehorvu.cut Ehuman.cut Eklepn.cut Eklula.cut Elacdl.cut Elyces.cut Emacfa.cut Emaize.cut Emaize_chl.cut Emammal_high.cut Emanse.cut Emarpo_chl.cut Emedsa.cut Emetth.cut Emouse.cut Emyctu.cut Eneigo.cut Eneucr.cut Eoncmy.cut Eorysa.cut Eorysa_chl.cut Epea.cut Epethy.cut Ephavu.cut Epig.cut Eplafa.cut Eprovu.cut Epseae.cut Epsepu.cut Epsesm.cut Erabit.cut Erat.cut Erhile.cut Erhime.cut Erhoca.cut Erhosh.cut Esalsa.cut Esalty.cut Eschma.cut Eschpo.cut '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/CODONS'
 /usr/bin/install -c -m 644 Eschpo_cai.cut Eschpo_high.cut Eserma.cut Esheep.cut Esoltu.cut Esoybn.cut Espiol.cut Estaau.cut Estrco.cut Estrmu.cut Estrpn.cut Estrpu.cut Esyncy.cut Esynco.cut Etetth.cut Etheth.cut Etobac.cut Etobac_chl.cut Etrybr.cut Etrycr.cut Evibch.cut Ewheat.cut Exenla.cut Eyeast.cut Eyeast_cai.cut Eyeast_high.cut Eyeast_mit.cut Eyeren.cut Eyerpe.cut Eacc.cut Eadenovirus5.cut Eadenovirus7.cut Eaidlav.cut Eanasp.cut Eani.cut Eani_h.cut Eanidmit.cut Easn.cut Eath.cut Eatu.cut '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/CODONS'
 /usr/bin/install -c -m 644 Eavi.cut Ebja.cut Ebly.cut Ebme.cut Ebmo.cut Ebna.cut Ebov.cut Ebovsp.cut Ebst.cut Ebsu.cut Ebsu_h.cut Ecac.cut Ecal.cut Eccr.cut Ecel.cut Echi.cut Echicken.cut Echisp.cut Echk.cut Echmp.cut Echnt.cut Echos.cut Echzm.cut Echzmrubp.cut Ecpx.cut Ecre.cut Ecrisp.cut Ectr.cut Eddi.cut Eddi_h.cut Edog.cut Edro.cut Edro_h.cut Edrosophila.cut Eeca.cut Eeco.cut Eeco_h.cut Eecoli.cut Ef1.cut Efish.cut '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/CODONS'
 /usr/bin/install -c -m 644 Efmdvpolyp.cut Eham.cut Ehha.cut Ehin.cut Ehma.cut Ehum.cut Ekla.cut Ekpn.cut Ella.cut Emac.cut Emam_h.cut Emixlg.cut Emsa.cut Emse.cut Emta.cut Emtu.cut Emus.cut Emussp.cut Emva.cut Emze.cut Emzecp.cut Encr.cut Eneu.cut Engo.cut Eoncsp.cut Epae.cut Epet.cut Epfa.cut Ephix174.cut Ephv.cut Ephy.cut Epig.cut Epolyomaa2.cut Epombe.cut Epombecai.cut Epot.cut Eppu.cut Epse.cut Epsy.cut Epvu.cut '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/CODONS'
 /usr/bin/install -c -m 644 Erab.cut Erabbit.cut Erabsp.cut Eratsp.cut Erca.cut Erhm.cut Eric.cut Erle.cut Erme.cut Ersp.cut Esalsp.cut Esau.cut Esco.cut Esgi.cut Eshp.cut Eshpsp.cut Esli.cut Eslm.cut Esma.cut Esmi.cut Esmu.cut Esoy.cut Espi.cut Espn.cut Espo.cut Espo_h.cut Espu.cut Esta.cut Esty.cut Esus.cut Esv40.cut Esyhsp.cut Esynsp.cut Etbr.cut Etcr.cut Eter.cut Etetsp.cut Etob.cut Etobcp.cut Etom.cut '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/CODONS'
 /usr/bin/install -c -m 644 Etrb.cut Evco.cut Ewht.cut Exel.cut Exenopus.cut Eyeastcai.cut Eyen.cut Eysc.cut Eysc_h.cut Eyscmt.cut Eysp.cut Ezebrafish.cut Ezma.cut '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/CODONS'
Making install in JASPAR_CNE
make[4]: Nothing to be done for `install-exec-am'.
 ../../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/JASPAR_CNE'
 /usr/bin/install -c -m 644 dummyfile '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/JASPAR_CNE'
Making install in JASPAR_CORE
make[4]: Nothing to be done for `install-exec-am'.
 ../../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/JASPAR_CORE'
 /usr/bin/install -c -m 644 dummyfile '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/JASPAR_CORE'
Making install in JASPAR_FAM
make[4]: Nothing to be done for `install-exec-am'.
 ../../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/JASPAR_FAM'
 /usr/bin/install -c -m 644 dummyfile '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/JASPAR_FAM'
Making install in JASPAR_PBM
make[4]: Nothing to be done for `install-exec-am'.
 ../../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/JASPAR_PBM'
 /usr/bin/install -c -m 644 dummyfile '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/JASPAR_PBM'
Making install in JASPAR_PBM_HLH
make[4]: Nothing to be done for `install-exec-am'.
 ../../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/JASPAR_PBM_HLH'
 /usr/bin/install -c -m 644 dummyfile '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/JASPAR_PBM_HLH'
Making install in JASPAR_PBM_HOMEO
make[4]: Nothing to be done for `install-exec-am'.
 ../../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/JASPAR_PBM_HOMEO'
 /usr/bin/install -c -m 644 dummyfile '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/JASPAR_PBM_HOMEO'
Making install in JASPAR_PHYLOFACTS
make[4]: Nothing to be done for `install-exec-am'.
 ../../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/JASPAR_PHYLOFACTS'
 /usr/bin/install -c -m 644 dummyfile '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/JASPAR_PHYLOFACTS'
Making install in JASPAR_POLII
make[4]: Nothing to be done for `install-exec-am'.
 ../../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/JASPAR_POLII'
 /usr/bin/install -c -m 644 dummyfile '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/JASPAR_POLII'
Making install in JASPAR_SPLICE
make[4]: Nothing to be done for `install-exec-am'.
 ../../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/JASPAR_SPLICE'
 /usr/bin/install -c -m 644 dummyfile '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/JASPAR_SPLICE'
Making install in OBO
make[4]: Nothing to be done for `install-exec-am'.
 ../../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/OBO'
 /usr/bin/install -c -m 644 chebi.obo eco.obo gene_ontology.1_2.obo pathway.obo ro.obo so.obo software.obo '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/OBO'
Making install in PRINTS
make[4]: Nothing to be done for `install-exec-am'.
 ../../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/PRINTS'
 /usr/bin/install -c -m 644 dummyfile '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/PRINTS'
Making install in PROSITE
make[4]: Nothing to be done for `install-exec-am'.
 ../../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/PROSITE'
 /usr/bin/install -c -m 644 dummyfile '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/PROSITE'
Making install in REBASE
make[4]: Nothing to be done for `install-exec-am'.
 ../../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/REBASE'
 /usr/bin/install -c -m 644 embossre.equ '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/REBASE'
Making install in TAXONOMY
make[4]: Nothing to be done for `install-exec-am'.
 ../../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/TAXONOMY'
 /usr/bin/install -c -m 644 division.dmp gencode.dmp merged.dmp names.dmp nodes.dmp '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data/TAXONOMY'
make[4]: Nothing to be done for `install-exec-am'.
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data'
 /usr/bin/install -c -m 644 DRCAT.dat EBLOSUM30 EBLOSUM35 EBLOSUM40 EBLOSUM45 EBLOSUM50 EBLOSUM55 EBLOSUM60 EBLOSUM62 EBLOSUM62-12 EBLOSUM65 EBLOSUM70 EBLOSUM75 EBLOSUM80 EBLOSUM85 EBLOSUM90 EBLOSUMN EDAM.obo EDNAFULL EDNAMAT EDNASIMPLE EGC.0 EGC.1 EGC.10 EGC.11 EGC.12 EGC.13 EGC.14 EGC.15 EGC.16 EGC.2 EGC.21 EGC.22 EGC.23 EGC.3 EGC.4 EGC.5 EGC.6 EGC.9 EGC.index '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data'
 /usr/bin/install -c -m 644 EGC.txt ENUC.4.2 ENUC.4.4 EPAM10 EPAM100 EPAM110 EPAM120 EPAM130 EPAM140 EPAM150 EPAM160 EPAM170 EPAM180 EPAM190 EPAM20 EPAM200 EPAM210 EPAM220 EPAM230 EPAM240 EPAM250 EPAM260 EPAM270 EPAM280 EPAM290 EPAM30 EPAM300 EPAM310 EPAM320 EPAM330 EPAM340 EPAM350 EPAM360 EPAM370 EPAM380 EPAM390 EPAM40 EPAM400 EPAM410 EPAM420 '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data'
 /usr/bin/install -c -m 644 EPAM430 EPAM440 EPAM450 EPAM460 EPAM470 EPAM480 EPAM490 EPAM50 EPAM500 EPAM60 EPAM70 EPAM80 EPAM90 Eaa_acc_surface.dat Eaa_hydropathy.dat Eaa_properties.dat Eamino.dat Eangles.dat Eangles_tri.dat Eantigenic.dat Ebases.iub Edayhoff.freq Edna.melt Eembl.ior Eenergy.dat Efeatures.embl Efeatures.emboss Efeatures.gff2 Efeatures.gff3 Efeatures.gff2protein Efeatures.gff3protein Efeatures.pir Efeatures.protein Efeatures.refseqp Efeatures.swiss Efreqs.dat Ehet.dat Ehth.dat Ehth87.dat Emass.dat '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data'
 /usr/bin/install -c -m 644 Emassmod.dat Ememe.dat Emethylsites.dat Emolwt.dat Emwfilter.dat Enakai.dat EnsemblAliases.dat EnsemblIdentifiers.dat Epepcoil.dat Epk.dat Epprofile Eprior1.plib Eprior30.plib Eresidues.iub Erna.melt Esig.euk Esig.pro Etags.embl Etags.emboss Etags.gff2 Etags.gff2protein Etags.gff3 Etags.gff3protein Etags.pir Etags.protein Etags.refseqp Etags.swiss Etcode.dat Evdw.dat Ewhite-wimley.dat Matrices.nucleotide Matrices.protein Matrices.proteinstructure SSSUB edialignmat tp400_dna tp400_prot tp400_trans '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/data'
Making install in index
make[3]: Nothing to be done for `install-exec-am'.
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/index'
 /usr/bin/install -c -m 644 drcat.ent drcat.pxac drcat.pxcat drcat.pxde drcat.pxedat drcat.pxefmt drcat.pxeid drcat.pxetpc drcat.pxid drcat.pxqfmt drcat.pxqin drcat.pxqout drcat.pxqurl drcat.pxrest drcat.pxrf drcat.pxsoap drcat.pxtaxid drcat.pxurl drcat.xac drcat.xcat drcat.xde drcat.xedat drcat.xefmt drcat.xeid drcat.xetpc drcat.xid drcat.xqfmt drcat.xqin drcat.xqout drcat.xqurl drcat.xrest drcat.xrf drcat.xsoap drcat.xtaxid drcat.xurl eco.ent eco.pxde eco.pxis eco.xde eco.xis '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/index'
 /usr/bin/install -c -m 644 eco.pxac eco.pxid eco.pxnm eco.xac eco.xid eco.xnm edam.ent edam.pxac edam.pxde edam.pxhasin edam.pxhasout edam.pxid edam.pxis edam.pxisfmt edam.pxisid edam.pxnm edam.pxns edam.xac edam.xde edam.xhasin edam.xhasout edam.xid edam.xis edam.xisfmt edam.xisid edam.xnm edam.xns go.ent go.pxde go.pxis go.pxns go.xde go.xis go.xns go.pxac go.pxid go.pxnm go.xac go.xid go.xnm '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/index'
 /usr/bin/install -c -m 644 pw.ent pw.pxde pw.pxis pw.xde pw.xis pw.pxac pw.pxid pw.pxnm pw.xac pw.xid pw.xnm ro.ent ro.pxde ro.pxis ro.xde ro.xis ro.pxac ro.pxid ro.pxnm ro.xac ro.xid ro.xnm so.ent so.pxde so.pxis so.xde so.xis so.pxac so.pxid so.pxnm so.xac so.xid so.xnm taxon.ent taxon.pxac taxon.pxgc taxon.pxid taxon.pxmgc taxon.pxrnk taxon.pxtax '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/index'
 /usr/bin/install -c -m 644 taxon.pxup taxon.xac taxon.xgc taxon.xid taxon.xmgc taxon.xrnk taxon.xtax taxon.xup '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/index'
 .././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/bin'
  /bin/sh ../libtool   --mode=install /usr/bin/install -c aaindexextract abiview acdc acdgalaxy acdlog acdpretty acdtable acdtrace acdvalid aligncopy aligncopypair antigenic assemblyget backtranambig backtranseq banana biosed btwisted cachedas cachedbfetch cacheebeyesearch cacheensembl cai chaos charge checktrans chips cirdna codcmp codcopy coderet compseq cons consambig cpgplot cpgreport cusp cutgextract cutseq dan dbiblast dbifasta dbiflat dbigcg dbtell dbxcompress dbxedam dbxfasta dbxflat dbxgcg dbxobo dbxreport dbxresource dbxstat dbxtax dbxuncompress degapseq density descseq diffseq distmat dotmatcher dotpath dottup dreg drfinddata drfindformat drfindid drfindresource drget drtext edamdef edamhasinput edamhasoutput edamisformat edamisid edamname edialign einverted embossdata embossupdate embossversion emma emowse entret epestfind eprimer3 eprimer32 equicktandem est2genome etandem extractalign extractfeat extractseq featcopy featmerge featreport feattext findkm freak fuzznuc fuzzpro fuzztran garnier geecee getorf godef goname helixturnhelix hmoment iep infoalign infoassembly infobase inforesidue infoseq isochore jaspextract jaspscan jembossctl lindna listor makenucseq makeprotseq marscan maskambignuc maskambigprot maskfeat maskseq matcher megamerger merger msbar mwcontam mwfilter needle needleall newcpgreport newcpgseek newseq nohtml noreturn nospace notab notseq nthseq nthseqset octanol oddcomp ontocount ontoget ontogetcommon ontogetdown ontogetobsolete ontogetroot ontogetsibs ontogetup ontoisobsolete ontotext palindrome pasteseq patmatdb patmatmotifs pepcoil pepdigest pepinfo pepnet pepstats pepwheel pepwindow pepwindowall plotcon plotorf polydot preg prettyplot prettyseq primersearch printsextract profit prophecy prophet prosextract pscan psiphi rebaseextract recoder redata refseqget remap restover restrict revseq seealso seqcount seqmatchall seqret seqretsetall seqretsplit seqxref seqxrefget servertell showalign showdb showfeat showorf showpep showseq showserver shuffleseq sigcleave silent sirna sixpack sizeseq skipredundant skipseq splitsource splitter stretcher stssearch supermatcher syco taxget taxgetdown taxgetrank taxgetspecies taxgetup tcode textget textsearch tfextract tfm tfscan tmap tranalign transeq trimest trimseq trimspace twofeat union urlget variationget vectorstrip water whichdb wobble wordcount wordfinder wordmatch wossdata wossinput wossname wossoperation wossoutput wossparam wosstopic yank '/sw/build.build/root-emboss-6.5.7-105/sw/bin'
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/aaindexextract /sw/build.build/root-emboss-6.5.7-105/sw/bin/aaindexextract
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/abiview /sw/build.build/root-emboss-6.5.7-105/sw/bin/abiview
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/acdc /sw/build.build/root-emboss-6.5.7-105/sw/bin/acdc
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/acdgalaxy /sw/build.build/root-emboss-6.5.7-105/sw/bin/acdgalaxy
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/acdlog /sw/build.build/root-emboss-6.5.7-105/sw/bin/acdlog
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/acdpretty /sw/build.build/root-emboss-6.5.7-105/sw/bin/acdpretty
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/acdtable /sw/build.build/root-emboss-6.5.7-105/sw/bin/acdtable
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/acdtrace /sw/build.build/root-emboss-6.5.7-105/sw/bin/acdtrace
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/acdvalid /sw/build.build/root-emboss-6.5.7-105/sw/bin/acdvalid
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/aligncopy /sw/build.build/root-emboss-6.5.7-105/sw/bin/aligncopy
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/aligncopypair /sw/build.build/root-emboss-6.5.7-105/sw/bin/aligncopypair
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/antigenic /sw/build.build/root-emboss-6.5.7-105/sw/bin/antigenic
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/assemblyget /sw/build.build/root-emboss-6.5.7-105/sw/bin/assemblyget
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/backtranambig /sw/build.build/root-emboss-6.5.7-105/sw/bin/backtranambig
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/backtranseq /sw/build.build/root-emboss-6.5.7-105/sw/bin/backtranseq
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/banana /sw/build.build/root-emboss-6.5.7-105/sw/bin/banana
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/biosed /sw/build.build/root-emboss-6.5.7-105/sw/bin/biosed
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/btwisted /sw/build.build/root-emboss-6.5.7-105/sw/bin/btwisted
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/cachedas /sw/build.build/root-emboss-6.5.7-105/sw/bin/cachedas
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/cachedbfetch /sw/build.build/root-emboss-6.5.7-105/sw/bin/cachedbfetch
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/cacheebeyesearch /sw/build.build/root-emboss-6.5.7-105/sw/bin/cacheebeyesearch
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/cacheensembl /sw/build.build/root-emboss-6.5.7-105/sw/bin/cacheensembl
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/cai /sw/build.build/root-emboss-6.5.7-105/sw/bin/cai
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/chaos /sw/build.build/root-emboss-6.5.7-105/sw/bin/chaos
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/charge /sw/build.build/root-emboss-6.5.7-105/sw/bin/charge
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/checktrans /sw/build.build/root-emboss-6.5.7-105/sw/bin/checktrans
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/chips /sw/build.build/root-emboss-6.5.7-105/sw/bin/chips
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/cirdna /sw/build.build/root-emboss-6.5.7-105/sw/bin/cirdna
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/codcmp /sw/build.build/root-emboss-6.5.7-105/sw/bin/codcmp
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/codcopy /sw/build.build/root-emboss-6.5.7-105/sw/bin/codcopy
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/coderet /sw/build.build/root-emboss-6.5.7-105/sw/bin/coderet
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/compseq /sw/build.build/root-emboss-6.5.7-105/sw/bin/compseq
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/cons /sw/build.build/root-emboss-6.5.7-105/sw/bin/cons
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/consambig /sw/build.build/root-emboss-6.5.7-105/sw/bin/consambig
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/cpgplot /sw/build.build/root-emboss-6.5.7-105/sw/bin/cpgplot
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/cpgreport /sw/build.build/root-emboss-6.5.7-105/sw/bin/cpgreport
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/cusp /sw/build.build/root-emboss-6.5.7-105/sw/bin/cusp
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/cutgextract /sw/build.build/root-emboss-6.5.7-105/sw/bin/cutgextract
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/cutseq /sw/build.build/root-emboss-6.5.7-105/sw/bin/cutseq
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/dan /sw/build.build/root-emboss-6.5.7-105/sw/bin/dan
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/dbiblast /sw/build.build/root-emboss-6.5.7-105/sw/bin/dbiblast
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/dbifasta /sw/build.build/root-emboss-6.5.7-105/sw/bin/dbifasta
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/dbiflat /sw/build.build/root-emboss-6.5.7-105/sw/bin/dbiflat
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/dbigcg /sw/build.build/root-emboss-6.5.7-105/sw/bin/dbigcg
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/dbtell /sw/build.build/root-emboss-6.5.7-105/sw/bin/dbtell
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/dbxcompress /sw/build.build/root-emboss-6.5.7-105/sw/bin/dbxcompress
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/dbxedam /sw/build.build/root-emboss-6.5.7-105/sw/bin/dbxedam
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/dbxfasta /sw/build.build/root-emboss-6.5.7-105/sw/bin/dbxfasta
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/dbxflat /sw/build.build/root-emboss-6.5.7-105/sw/bin/dbxflat
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/dbxgcg /sw/build.build/root-emboss-6.5.7-105/sw/bin/dbxgcg
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/dbxobo /sw/build.build/root-emboss-6.5.7-105/sw/bin/dbxobo
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/dbxreport /sw/build.build/root-emboss-6.5.7-105/sw/bin/dbxreport
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/dbxresource /sw/build.build/root-emboss-6.5.7-105/sw/bin/dbxresource
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/dbxstat /sw/build.build/root-emboss-6.5.7-105/sw/bin/dbxstat
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/dbxtax /sw/build.build/root-emboss-6.5.7-105/sw/bin/dbxtax
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/dbxuncompress /sw/build.build/root-emboss-6.5.7-105/sw/bin/dbxuncompress
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/degapseq /sw/build.build/root-emboss-6.5.7-105/sw/bin/degapseq
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/density /sw/build.build/root-emboss-6.5.7-105/sw/bin/density
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/descseq /sw/build.build/root-emboss-6.5.7-105/sw/bin/descseq
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/diffseq /sw/build.build/root-emboss-6.5.7-105/sw/bin/diffseq
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/distmat /sw/build.build/root-emboss-6.5.7-105/sw/bin/distmat
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/dotmatcher /sw/build.build/root-emboss-6.5.7-105/sw/bin/dotmatcher
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/dotpath /sw/build.build/root-emboss-6.5.7-105/sw/bin/dotpath
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/dottup /sw/build.build/root-emboss-6.5.7-105/sw/bin/dottup
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/dreg /sw/build.build/root-emboss-6.5.7-105/sw/bin/dreg
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/drfinddata /sw/build.build/root-emboss-6.5.7-105/sw/bin/drfinddata
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/drfindformat /sw/build.build/root-emboss-6.5.7-105/sw/bin/drfindformat
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/drfindid /sw/build.build/root-emboss-6.5.7-105/sw/bin/drfindid
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/drfindresource /sw/build.build/root-emboss-6.5.7-105/sw/bin/drfindresource
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/drget /sw/build.build/root-emboss-6.5.7-105/sw/bin/drget
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/drtext /sw/build.build/root-emboss-6.5.7-105/sw/bin/drtext
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/edamdef /sw/build.build/root-emboss-6.5.7-105/sw/bin/edamdef
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/edamhasinput /sw/build.build/root-emboss-6.5.7-105/sw/bin/edamhasinput
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/edamhasoutput /sw/build.build/root-emboss-6.5.7-105/sw/bin/edamhasoutput
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/edamisformat /sw/build.build/root-emboss-6.5.7-105/sw/bin/edamisformat
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/edamisid /sw/build.build/root-emboss-6.5.7-105/sw/bin/edamisid
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/edamname /sw/build.build/root-emboss-6.5.7-105/sw/bin/edamname
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/edialign /sw/build.build/root-emboss-6.5.7-105/sw/bin/edialign
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/einverted /sw/build.build/root-emboss-6.5.7-105/sw/bin/einverted
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/embossdata /sw/build.build/root-emboss-6.5.7-105/sw/bin/embossdata
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/embossupdate /sw/build.build/root-emboss-6.5.7-105/sw/bin/embossupdate
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/embossversion /sw/build.build/root-emboss-6.5.7-105/sw/bin/embossversion
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/emma /sw/build.build/root-emboss-6.5.7-105/sw/bin/emma
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/emowse /sw/build.build/root-emboss-6.5.7-105/sw/bin/emowse
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/entret /sw/build.build/root-emboss-6.5.7-105/sw/bin/entret
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/epestfind /sw/build.build/root-emboss-6.5.7-105/sw/bin/epestfind
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/eprimer3 /sw/build.build/root-emboss-6.5.7-105/sw/bin/eprimer3
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/eprimer32 /sw/build.build/root-emboss-6.5.7-105/sw/bin/eprimer32
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/equicktandem /sw/build.build/root-emboss-6.5.7-105/sw/bin/equicktandem
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/est2genome /sw/build.build/root-emboss-6.5.7-105/sw/bin/est2genome
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/etandem /sw/build.build/root-emboss-6.5.7-105/sw/bin/etandem
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/extractalign /sw/build.build/root-emboss-6.5.7-105/sw/bin/extractalign
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/extractfeat /sw/build.build/root-emboss-6.5.7-105/sw/bin/extractfeat
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/extractseq /sw/build.build/root-emboss-6.5.7-105/sw/bin/extractseq
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/featcopy /sw/build.build/root-emboss-6.5.7-105/sw/bin/featcopy
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/featmerge /sw/build.build/root-emboss-6.5.7-105/sw/bin/featmerge
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/featreport /sw/build.build/root-emboss-6.5.7-105/sw/bin/featreport
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/feattext /sw/build.build/root-emboss-6.5.7-105/sw/bin/feattext
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/findkm /sw/build.build/root-emboss-6.5.7-105/sw/bin/findkm
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/freak /sw/build.build/root-emboss-6.5.7-105/sw/bin/freak
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/fuzznuc /sw/build.build/root-emboss-6.5.7-105/sw/bin/fuzznuc
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/fuzzpro /sw/build.build/root-emboss-6.5.7-105/sw/bin/fuzzpro
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/fuzztran /sw/build.build/root-emboss-6.5.7-105/sw/bin/fuzztran
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/garnier /sw/build.build/root-emboss-6.5.7-105/sw/bin/garnier
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/geecee /sw/build.build/root-emboss-6.5.7-105/sw/bin/geecee
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/getorf /sw/build.build/root-emboss-6.5.7-105/sw/bin/getorf
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/godef /sw/build.build/root-emboss-6.5.7-105/sw/bin/godef
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/goname /sw/build.build/root-emboss-6.5.7-105/sw/bin/goname
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/helixturnhelix /sw/build.build/root-emboss-6.5.7-105/sw/bin/helixturnhelix
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/hmoment /sw/build.build/root-emboss-6.5.7-105/sw/bin/hmoment
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/iep /sw/build.build/root-emboss-6.5.7-105/sw/bin/iep
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/infoalign /sw/build.build/root-emboss-6.5.7-105/sw/bin/infoalign
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/infoassembly /sw/build.build/root-emboss-6.5.7-105/sw/bin/infoassembly
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/infobase /sw/build.build/root-emboss-6.5.7-105/sw/bin/infobase
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/inforesidue /sw/build.build/root-emboss-6.5.7-105/sw/bin/inforesidue
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/infoseq /sw/build.build/root-emboss-6.5.7-105/sw/bin/infoseq
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/isochore /sw/build.build/root-emboss-6.5.7-105/sw/bin/isochore
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/jaspextract /sw/build.build/root-emboss-6.5.7-105/sw/bin/jaspextract
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/jaspscan /sw/build.build/root-emboss-6.5.7-105/sw/bin/jaspscan
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/jembossctl /sw/build.build/root-emboss-6.5.7-105/sw/bin/jembossctl
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/lindna /sw/build.build/root-emboss-6.5.7-105/sw/bin/lindna
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/listor /sw/build.build/root-emboss-6.5.7-105/sw/bin/listor
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/makenucseq /sw/build.build/root-emboss-6.5.7-105/sw/bin/makenucseq
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/makeprotseq /sw/build.build/root-emboss-6.5.7-105/sw/bin/makeprotseq
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/marscan /sw/build.build/root-emboss-6.5.7-105/sw/bin/marscan
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/maskambignuc /sw/build.build/root-emboss-6.5.7-105/sw/bin/maskambignuc
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/maskambigprot /sw/build.build/root-emboss-6.5.7-105/sw/bin/maskambigprot
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/maskfeat /sw/build.build/root-emboss-6.5.7-105/sw/bin/maskfeat
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/maskseq /sw/build.build/root-emboss-6.5.7-105/sw/bin/maskseq
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/matcher /sw/build.build/root-emboss-6.5.7-105/sw/bin/matcher
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/megamerger /sw/build.build/root-emboss-6.5.7-105/sw/bin/megamerger
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/merger /sw/build.build/root-emboss-6.5.7-105/sw/bin/merger
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/msbar /sw/build.build/root-emboss-6.5.7-105/sw/bin/msbar
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/mwcontam /sw/build.build/root-emboss-6.5.7-105/sw/bin/mwcontam
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/mwfilter /sw/build.build/root-emboss-6.5.7-105/sw/bin/mwfilter
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/needle /sw/build.build/root-emboss-6.5.7-105/sw/bin/needle
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/needleall /sw/build.build/root-emboss-6.5.7-105/sw/bin/needleall
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/newcpgreport /sw/build.build/root-emboss-6.5.7-105/sw/bin/newcpgreport
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/newcpgseek /sw/build.build/root-emboss-6.5.7-105/sw/bin/newcpgseek
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/newseq /sw/build.build/root-emboss-6.5.7-105/sw/bin/newseq
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/nohtml /sw/build.build/root-emboss-6.5.7-105/sw/bin/nohtml
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/noreturn /sw/build.build/root-emboss-6.5.7-105/sw/bin/noreturn
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/nospace /sw/build.build/root-emboss-6.5.7-105/sw/bin/nospace
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/notab /sw/build.build/root-emboss-6.5.7-105/sw/bin/notab
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/notseq /sw/build.build/root-emboss-6.5.7-105/sw/bin/notseq
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/nthseq /sw/build.build/root-emboss-6.5.7-105/sw/bin/nthseq
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/nthseqset /sw/build.build/root-emboss-6.5.7-105/sw/bin/nthseqset
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/octanol /sw/build.build/root-emboss-6.5.7-105/sw/bin/octanol
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/oddcomp /sw/build.build/root-emboss-6.5.7-105/sw/bin/oddcomp
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/ontocount /sw/build.build/root-emboss-6.5.7-105/sw/bin/ontocount
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/ontoget /sw/build.build/root-emboss-6.5.7-105/sw/bin/ontoget
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/ontogetcommon /sw/build.build/root-emboss-6.5.7-105/sw/bin/ontogetcommon
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/ontogetdown /sw/build.build/root-emboss-6.5.7-105/sw/bin/ontogetdown
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/ontogetobsolete /sw/build.build/root-emboss-6.5.7-105/sw/bin/ontogetobsolete
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/ontogetroot /sw/build.build/root-emboss-6.5.7-105/sw/bin/ontogetroot
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/ontogetsibs /sw/build.build/root-emboss-6.5.7-105/sw/bin/ontogetsibs
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/ontogetup /sw/build.build/root-emboss-6.5.7-105/sw/bin/ontogetup
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/ontoisobsolete /sw/build.build/root-emboss-6.5.7-105/sw/bin/ontoisobsolete
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/ontotext /sw/build.build/root-emboss-6.5.7-105/sw/bin/ontotext
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/palindrome /sw/build.build/root-emboss-6.5.7-105/sw/bin/palindrome
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/pasteseq /sw/build.build/root-emboss-6.5.7-105/sw/bin/pasteseq
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/patmatdb /sw/build.build/root-emboss-6.5.7-105/sw/bin/patmatdb
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/patmatmotifs /sw/build.build/root-emboss-6.5.7-105/sw/bin/patmatmotifs
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/pepcoil /sw/build.build/root-emboss-6.5.7-105/sw/bin/pepcoil
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/pepdigest /sw/build.build/root-emboss-6.5.7-105/sw/bin/pepdigest
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/pepinfo /sw/build.build/root-emboss-6.5.7-105/sw/bin/pepinfo
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/pepnet /sw/build.build/root-emboss-6.5.7-105/sw/bin/pepnet
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/pepstats /sw/build.build/root-emboss-6.5.7-105/sw/bin/pepstats
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/pepwheel /sw/build.build/root-emboss-6.5.7-105/sw/bin/pepwheel
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/pepwindow /sw/build.build/root-emboss-6.5.7-105/sw/bin/pepwindow
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/pepwindowall /sw/build.build/root-emboss-6.5.7-105/sw/bin/pepwindowall
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/plotcon /sw/build.build/root-emboss-6.5.7-105/sw/bin/plotcon
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/plotorf /sw/build.build/root-emboss-6.5.7-105/sw/bin/plotorf
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/polydot /sw/build.build/root-emboss-6.5.7-105/sw/bin/polydot
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/preg /sw/build.build/root-emboss-6.5.7-105/sw/bin/preg
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/prettyplot /sw/build.build/root-emboss-6.5.7-105/sw/bin/prettyplot
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/prettyseq /sw/build.build/root-emboss-6.5.7-105/sw/bin/prettyseq
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/primersearch /sw/build.build/root-emboss-6.5.7-105/sw/bin/primersearch
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/printsextract /sw/build.build/root-emboss-6.5.7-105/sw/bin/printsextract
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/profit /sw/build.build/root-emboss-6.5.7-105/sw/bin/profit
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/prophecy /sw/build.build/root-emboss-6.5.7-105/sw/bin/prophecy
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/prophet /sw/build.build/root-emboss-6.5.7-105/sw/bin/prophet
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/prosextract /sw/build.build/root-emboss-6.5.7-105/sw/bin/prosextract
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/pscan /sw/build.build/root-emboss-6.5.7-105/sw/bin/pscan
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/psiphi /sw/build.build/root-emboss-6.5.7-105/sw/bin/psiphi
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/rebaseextract /sw/build.build/root-emboss-6.5.7-105/sw/bin/rebaseextract
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/recoder /sw/build.build/root-emboss-6.5.7-105/sw/bin/recoder
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/redata /sw/build.build/root-emboss-6.5.7-105/sw/bin/redata
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/refseqget /sw/build.build/root-emboss-6.5.7-105/sw/bin/refseqget
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/remap /sw/build.build/root-emboss-6.5.7-105/sw/bin/remap
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/restover /sw/build.build/root-emboss-6.5.7-105/sw/bin/restover
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/restrict /sw/build.build/root-emboss-6.5.7-105/sw/bin/restrict
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/revseq /sw/build.build/root-emboss-6.5.7-105/sw/bin/revseq
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/seealso /sw/build.build/root-emboss-6.5.7-105/sw/bin/seealso
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/seqcount /sw/build.build/root-emboss-6.5.7-105/sw/bin/seqcount
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/seqmatchall /sw/build.build/root-emboss-6.5.7-105/sw/bin/seqmatchall
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/seqret /sw/build.build/root-emboss-6.5.7-105/sw/bin/seqret
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/seqretsetall /sw/build.build/root-emboss-6.5.7-105/sw/bin/seqretsetall
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/seqretsplit /sw/build.build/root-emboss-6.5.7-105/sw/bin/seqretsplit
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/seqxref /sw/build.build/root-emboss-6.5.7-105/sw/bin/seqxref
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/seqxrefget /sw/build.build/root-emboss-6.5.7-105/sw/bin/seqxrefget
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/servertell /sw/build.build/root-emboss-6.5.7-105/sw/bin/servertell
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/showalign /sw/build.build/root-emboss-6.5.7-105/sw/bin/showalign
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/showdb /sw/build.build/root-emboss-6.5.7-105/sw/bin/showdb
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/showfeat /sw/build.build/root-emboss-6.5.7-105/sw/bin/showfeat
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/showorf /sw/build.build/root-emboss-6.5.7-105/sw/bin/showorf
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/showpep /sw/build.build/root-emboss-6.5.7-105/sw/bin/showpep
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/showseq /sw/build.build/root-emboss-6.5.7-105/sw/bin/showseq
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/showserver /sw/build.build/root-emboss-6.5.7-105/sw/bin/showserver
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/shuffleseq /sw/build.build/root-emboss-6.5.7-105/sw/bin/shuffleseq
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/sigcleave /sw/build.build/root-emboss-6.5.7-105/sw/bin/sigcleave
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/silent /sw/build.build/root-emboss-6.5.7-105/sw/bin/silent
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/sirna /sw/build.build/root-emboss-6.5.7-105/sw/bin/sirna
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/sixpack /sw/build.build/root-emboss-6.5.7-105/sw/bin/sixpack
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/sizeseq /sw/build.build/root-emboss-6.5.7-105/sw/bin/sizeseq
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/skipredundant /sw/build.build/root-emboss-6.5.7-105/sw/bin/skipredundant
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/skipseq /sw/build.build/root-emboss-6.5.7-105/sw/bin/skipseq
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/splitsource /sw/build.build/root-emboss-6.5.7-105/sw/bin/splitsource
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/splitter /sw/build.build/root-emboss-6.5.7-105/sw/bin/splitter
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/stretcher /sw/build.build/root-emboss-6.5.7-105/sw/bin/stretcher
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/stssearch /sw/build.build/root-emboss-6.5.7-105/sw/bin/stssearch
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/supermatcher /sw/build.build/root-emboss-6.5.7-105/sw/bin/supermatcher
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/syco /sw/build.build/root-emboss-6.5.7-105/sw/bin/syco
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/taxget /sw/build.build/root-emboss-6.5.7-105/sw/bin/taxget
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/taxgetdown /sw/build.build/root-emboss-6.5.7-105/sw/bin/taxgetdown
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/taxgetrank /sw/build.build/root-emboss-6.5.7-105/sw/bin/taxgetrank
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/taxgetspecies /sw/build.build/root-emboss-6.5.7-105/sw/bin/taxgetspecies
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/taxgetup /sw/build.build/root-emboss-6.5.7-105/sw/bin/taxgetup
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/tcode /sw/build.build/root-emboss-6.5.7-105/sw/bin/tcode
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/textget /sw/build.build/root-emboss-6.5.7-105/sw/bin/textget
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/textsearch /sw/build.build/root-emboss-6.5.7-105/sw/bin/textsearch
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/tfextract /sw/build.build/root-emboss-6.5.7-105/sw/bin/tfextract
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/tfm /sw/build.build/root-emboss-6.5.7-105/sw/bin/tfm
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/tfscan /sw/build.build/root-emboss-6.5.7-105/sw/bin/tfscan
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/tmap /sw/build.build/root-emboss-6.5.7-105/sw/bin/tmap
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/tranalign /sw/build.build/root-emboss-6.5.7-105/sw/bin/tranalign
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/transeq /sw/build.build/root-emboss-6.5.7-105/sw/bin/transeq
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/trimest /sw/build.build/root-emboss-6.5.7-105/sw/bin/trimest
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/trimseq /sw/build.build/root-emboss-6.5.7-105/sw/bin/trimseq
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/trimspace /sw/build.build/root-emboss-6.5.7-105/sw/bin/trimspace
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/twofeat /sw/build.build/root-emboss-6.5.7-105/sw/bin/twofeat
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/union /sw/build.build/root-emboss-6.5.7-105/sw/bin/union
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/urlget /sw/build.build/root-emboss-6.5.7-105/sw/bin/urlget
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/variationget /sw/build.build/root-emboss-6.5.7-105/sw/bin/variationget
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/vectorstrip /sw/build.build/root-emboss-6.5.7-105/sw/bin/vectorstrip
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/water /sw/build.build/root-emboss-6.5.7-105/sw/bin/water
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/whichdb /sw/build.build/root-emboss-6.5.7-105/sw/bin/whichdb
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/wobble /sw/build.build/root-emboss-6.5.7-105/sw/bin/wobble
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/wordcount /sw/build.build/root-emboss-6.5.7-105/sw/bin/wordcount
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/wordfinder /sw/build.build/root-emboss-6.5.7-105/sw/bin/wordfinder
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/wordmatch /sw/build.build/root-emboss-6.5.7-105/sw/bin/wordmatch
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/wossdata /sw/build.build/root-emboss-6.5.7-105/sw/bin/wossdata
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/wossinput /sw/build.build/root-emboss-6.5.7-105/sw/bin/wossinput
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/wossname /sw/build.build/root-emboss-6.5.7-105/sw/bin/wossname
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/wossoperation /sw/build.build/root-emboss-6.5.7-105/sw/bin/wossoperation
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/wossoutput /sw/build.build/root-emboss-6.5.7-105/sw/bin/wossoutput
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/wossparam /sw/build.build/root-emboss-6.5.7-105/sw/bin/wossparam
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/wosstopic /sw/build.build/root-emboss-6.5.7-105/sw/bin/wosstopic
libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `/sw/build.build/emboss-6.5.7-105/EMBOSS-6.5.7/ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/sw/lib/EMBOSS/lib'
libtool: install: /usr/bin/install -c .libs/yank /sw/build.build/root-emboss-6.5.7-105/sw/bin/yank
 .././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS'
 /usr/bin/install -c -m 644 emboss.default.template emboss.standard server.biomart server.dasregistry server.dbfetch server.dkfz server.ebeye server.entrez server.ensembl server.ensemblgenomes server.mrs server.mrs3 server.mrs4 server.srs server.wsdbfetch '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS'
Making install in test
Making install in data
make[3]: Nothing to be done for `install-exec-am'.
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/test/data'
 /usr/bin/install -c -m 644 aaindex1.test prosite.dat prosite.doc prints.test withrefm site.dat cutg.codon dna.acedb dna.aln dna.asn1 dna.codata dna.embl dna.fasta dna.fitch dna.gcg dna.gcg8 dna.genbank dna.ig dna.m-acedb dna.m-codata dna.m-embl dna.m-fasta dna.m-fasta-long dna.m-ncbi dna.m-strider dna.msf dna.msf8 dna.ncbi dna.phylip dna.phylip3 dna.staden dna.strider dna.text feat.emft feat.fasta feat.pir mw1.dat mw2.dat mw3.dat paamir.gff '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/test/data'
 /usr/bin/install -c -m 644 paamir.gff3 paamir.pep pax6_cdna.fasta prot.acedb prot.codata prot.fasta prot.gcg prot.gcg8 prot.ig prot.m-acedb prot.m-codata prot.m-fasta prot.m-nbrf prot.m-ncbi prot.m-swiss prot.nbrf prot.ncbi prot.swiss prot.text z83307.seq 104k.nbrf aligna.dna alignapart.dna alignb.dna aligna.prot alignapart.prot alignb.prot nuc.pat nucseq.pat nucsimple.pat tranalign.pep tranalign.seq vtest.seq opsd.msf untrimmed.seq '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/test/data'
Making install in embl
make[3]: Nothing to be done for `install-exec-am'.
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/test/embl'
 /usr/bin/install -c -m 644 acnum.hit acnum.trg division.lkp entrynam.idx seqvn.hit seqvn.trg des.hit des.trg keyword.hit keyword.trg taxon.hit taxon.trg condiv.dat est.dat fun.dat hum1.dat inv.dat pln.dat pro.dat rod.dat sts.dat syn.dat vrl.dat vrt.dat wgs.dat '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/test/embl'
Making install in genbank
make[3]: Nothing to be done for `install-exec-am'.
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/test/genbank'
 /usr/bin/install -c -m 644 acnum.hit acnum.trg division.lkp entrynam.idx seqvn.hit seqvn.trg des.hit des.trg keyword.hit keyword.trg taxon.hit taxon.trg gbbct1.seq gbest1.seq gbinv1.seq gbpln1.seq gbpln2.seq gbpri1.seq gbrod1.seq gbsts1.seq gbvrl1.seq gbvrt.seq '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/test/genbank'
Making install in pir
make[3]: Nothing to be done for `install-exec-am'.
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/test/pir'
 /usr/bin/install -c -m 644 acnum.hit acnum.trg division.lkp entrynam.idx des.hit des.trg keyword.hit keyword.trg taxon.hit taxon.trg pir1.header pir1.names pir1.numbers pir1.offset pir1.ref pir1.seq pir2.header pir2.names pir2.numbers pir2.offset pir2.ref pir2.seq pir3.header pir3.names pir3.numbers pir3.offset pir3.ref pir3.seq pir4.header pir4.names pir4.numbers pir4.offset pir4.ref pir4.seq '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/test/pir'
Making install in swiss
make[3]: Nothing to be done for `install-exec-am'.
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/test/swiss'
 /usr/bin/install -c -m 644 seq.dat acnum.hit acnum.trg division.lkp entrynam.idx seqvn.hit seqvn.trg des.hit des.trg keyword.hit keyword.trg taxon.hit taxon.trg '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/test/swiss'
Making install in swnew
make[3]: Nothing to be done for `install-exec-am'.
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/test/swnew'
 /usr/bin/install -c -m 644 acnum.hit acnum.trg division.lkp entrynam.idx seqvn.hit seqvn.trg des.hit des.trg keyword.hit keyword.trg taxon.hit taxon.trg trembl.dat '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/test/swnew'
Making install in testdb
make[3]: Nothing to be done for `install-exec-am'.
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/test/testdb'
 /usr/bin/install -c -m 644 testdb.fasta acnum.hit acnum.trg division.lkp entrynam.idx des.hit des.trg '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/test/testdb'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
Making install in doc
Making install in manuals
make[3]: Nothing to be done for `install-exec-am'.
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/manuals'
 /usr/bin/install -c -m 644 admin.tex admin.aux admin.dvi admin.log admin.pdf admin.ps admin.toc adminguide.tar.gz domainatrix.doc program.ps.gz EMBOSS-FreeBSD-HOWTO.txt emboss_qg.pdf emboss_qg.ps emboss.sty fdl.txt '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/manuals'
Making install in programs
Making install in html
make[4]: Nothing to be done for `install-exec-am'.
 ../../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/programs/html'
 /usr/bin/install -c -m 644 groups.html acd_group.html alignment_group.html alignment_consensus_group.html alignment_differences_group.html alignment_dot_plots_group.html alignment_global_group.html alignment_local_group.html alignment_multiple_group.html assembly_fragment_assembly_group.html data_resources_group.html data_retrieval_group.html data_retrieval_chemistry_data_group.html data_retrieval_feature_data_group.html data_retrieval_ontology_data_group.html data_retrieval_resource_data_group.html data_retrieval_sequence_data_group.html data_retrieval_sequence_data_assembly_data_group.html data_retrieval_text_data_group.html data_retrieval_tool_data_group.html data_retrieval_url_data_group.html display_group.html documentation_group.html edit_group.html enzyme_kinetics_group.html feature_tables_group.html hmm_group.html information_group.html menus_group.html nucleic_2d_structure_group.html nucleic_codon_usage_group.html nucleic_composition_group.html nucleic_cpg_islands_group.html nucleic_functional_sites_group.html nucleic_gene_finding_group.html nucleic_motifs_group.html nucleic_mutation_group.html nucleic_primers_group.html nucleic_profiles_group.html nucleic_properties_group.html '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/programs/html'
 /usr/bin/install -c -m 644 nucleic_repeats_group.html nucleic_restriction_group.html nucleic_rna_folding_group.html nucleic_transcription_group.html nucleic_translation_group.html ontology_group.html ontology_edam_group.html ontology_go_group.html ontology_taxonomy_group.html phylogeny_group.html phylogeny_consensus_group.html phylogeny_continuous_characters_group.html phylogeny_discrete_characters_group.html phylogeny_distance_matrix_group.html phylogeny_gene_frequencies_group.html phylogeny_molecular_sequence_group.html phylogeny_tree_drawing_group.html protein_2d_structure_group.html protein_3d_structure_group.html protein_composition_group.html protein_domains_group.html protein_functional_sites_group.html protein_modifications_group.html protein_motifs_group.html protein_mutation_group.html protein_profiles_group.html protein_properties_group.html test_group.html utils_group.html utils_database_creation_group.html utils_database_indexing_group.html '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/programs/html'
 ../../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/programs/html'
 /usr/bin/install -c -m 644 emboss_icon.jpg abiview.1.abiview.gif banana.1.banana.gif chaos.1.chaos.gif cirdna.1.cirdna.gif cpgplot.1.cpgplot.gif dan.2.dan.gif density.1.density.gif density.2.density.gif density.3.density.gif dotmatcher.1.dotmatcher.gif dotpath.1.dotpath.gif dottup.1.dottup.gif emboss_icon.gif epestfind.1.epestfind.gif findkm.1.findkm.gif isochore.1.isochore.gif lindna.1.lindna.gif octanol.1.octanol.gif pepinfo.1.pepinfo.gif pepnet.1.pepnet.gif pepwheel.1.pepwheel.gif pepwindow.1.pepwindow.gif pepwindowall.1.pepwindowall.gif plotcon.1.plotcon.gif plotorf.1.plotorf.gif plotorf.2.plotorf.gif polydot.1.polydot.gif prettyplot.1.prettyplot.gif prettyplot.2.prettyplot.gif syco.1.syco.gif tcode.2.tcode.gif tmap.1.tmap.gif wobble.1.wobble.gif '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/programs/html'
 ../../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/programs/html'
 /usr/bin/install -c -m 644 aaindexextract.html abiview.html acdc.html acdlog.html acdpretty.html acdtable.html acdtrace.html acdvalid.html aligncopy.html aligncopypair.html antigenic.html assemblyget.html backtranambig.html backtranseq.html banana.html biosed.html btwisted.html cachedas.html cachedbfetch.html cacheebeyesearch.html cacheensembl.html cai.html chaos.html charge.html checktrans.html chips.html cirdna.html codcmp.html codcopy.html coderet.html complex.html compseq.html cons.html consambig.html cpgplot.html cpgreport.html cusp.html cutgextract.html cutseq.html dan.html '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/programs/html'
 /usr/bin/install -c -m 644 dbiblast.html dbifasta.html dbiflat.html dbigcg.html dbtell.html dbxcompress.html dbxedam.html dbxfasta.html dbxflat.html dbxgcg.html dbxobo.html dbxreport.html dbxresource.html dbxstat.html dbxtax.html dbxuncompress.html degapseq.html density.html descseq.html diffseq.html distmat.html dotmatcher.html dotpath.html dottup.html dreg.html drfinddata.html drfindformat.html drfindid.html drfindresource.html drget.html drtext.html edamdef.html edamhasinput.html edamhasoutput.html edamisformat.html edamisid.html edamname.html edialign.html einverted.html embossdata.html '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/programs/html'
 /usr/bin/install -c -m 644 embossupdate.html embossversion.html emma.html emowse.html entret.html epestfind.html eprimer3.html eprimer32.html equicktandem.html est2genome.html etandem.html extractalign.html extractfeat.html extractseq.html featcopy.html featmerge.html featreport.html feattext.html findkm.html freak.html fuzznuc.html fuzzpro.html fuzztran.html garnier.html geecee.html getorf.html godef.html goname.html helixturnhelix.html hmoment.html iep.html index.html infoalign.html infoassembly.html infobase.html inforesidue.html infoseq.html isochore.html jaspextract.html jaspscan.html '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/programs/html'
 /usr/bin/install -c -m 644 jembossctl.html '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/programs/html'
 ../../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/programs/html'
 /usr/bin/install -c -m 644 libscan.html lindna.html listor.html makenucseq.html makeprotseq.html marscan.html maskambignuc.html maskambigprot.html maskfeat.html maskseq.html matcher.html megamerger.html merger.html msbar.html mwcontam.html mwfilter.html needle.html needleall.html newcpgreport.html newcpgseek.html newseq.html nohtml.html noreturn.html nospace.html notab.html notseq.html nthseq.html nthseqset.html octanol.html oddcomp.html ontocount.html ontoget.html ontogetcommon.html ontogetdown.html ontogetobsolete.html ontogetroot.html ontogetsibs.html ontogetup.html ontoisobsolete.html ontotext.html '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/programs/html'
 /usr/bin/install -c -m 644 palindrome.html pasteseq.html patmatdb.html patmatmotifs.html pepcoil.html pepdigest.html pepinfo.html pepnet.html pepstats.html pepwheel.html pepwindow.html pepwindowall.html plotcon.html plotorf.html polydot.html preg.html prettyplot.html prettyseq.html primersearch.html printsextract.html profit.html prophecy.html prophet.html prosextract.html pscan.html psiphi.html rebaseextract.html recoder.html redata.html refseqget.html remap.html restover.html restrict.html revseq.html seealso.html seqcount.html seqmatchall.html seqret.html seqretsetall.html seqretsplit.html '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/programs/html'
 /usr/bin/install -c -m 644 seqxref.html seqxrefget.html servertell.html showalign.html showdb.html showfeat.html showorf.html showpep.html showseq.html showserver.html shuffleseq.html sigcleave.html silent.html sirna.html sixpack.html sizeseq.html skipredundant.html skipseq.html splitsource.html splitter.html stretcher.html stssearch.html supermatcher.html syco.html taxget.html taxgetdown.html taxgetrank.html taxgetspecies.html taxgetup.html tcode.html template.html textget.html textsearch.html tfextract.html tfm.html tfscan.html tmap.html tranalign.html transeq.html trimest.html '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/programs/html'
 /usr/bin/install -c -m 644 trimseq.html trimspace.html twofeat.html union.html urlget.html variationget.html vectorstrip.html water.html whichdb.html wobble.html wordcount.html wordfinder.html wordmatch.html wossdata.html wossinput.html wossname.html wossoperation.html wossoutput.html wossparam.html wosstopic.html yank.html '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/programs/html'
Making install in text
make[4]: Nothing to be done for `install-exec-am'.
 ../../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/programs/text'
 /usr/bin/install -c -m 644 aaindexextract.txt abiview.txt acdc.txt acdlog.txt acdpretty.txt acdtable.txt acdtrace.txt acdvalid.txt aligncopy.txt aligncopypair.txt antigenic.txt assemblyget.txt backtranambig.txt backtranseq.txt banana.txt biosed.txt btwisted.txt cachedas.txt cachedbfetch.txt cacheebeyesearch.txt cacheensembl.txt cai.txt chaos.txt charge.txt checktrans.txt chips.txt cirdna.txt codcmp.txt codcopy.txt coderet.txt complex.txt compseq.txt cons.txt consambig.txt cpgplot.txt cpgreport.txt cusp.txt cutgextract.txt cutseq.txt dan.txt '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/programs/text'
 /usr/bin/install -c -m 644 dbiblast.txt dbifasta.txt dbiflat.txt dbigcg.txt dbtell.txt dbxcompress.txt dbxedam.txt dbxfasta.txt dbxflat.txt dbxgcg.txt dbxobo.txt dbxreport.txt dbxresource.txt dbxstat.txt dbxtax.txt dbxuncompress.txt degapseq.txt density.txt descseq.txt diffseq.txt distmat.txt dotmatcher.txt dotpath.txt dottup.txt dreg.txt drfinddata.txt drfindformat.txt drfindid.txt drfindresource.txt drget.txt drtext.txt edamdef.txt edamhasinput.txt edamhasoutput.txt edamisformat.txt edamisid.txt edamname.txt edialign.txt einverted.txt embossdata.txt '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/programs/text'
 /usr/bin/install -c -m 644 embossupdate.txt embossversion.txt emma.txt emowse.txt entret.txt epestfind.txt eprimer3.txt eprimer32.txt equicktandem.txt est2genome.txt etandem.txt extractalign.txt extractfeat.txt extractseq.txt featcopy.txt featmerge.txt featreport.txt feattext.txt findkm.txt freak.txt fuzznuc.txt fuzzpro.txt fuzztran.txt garnier.txt geecee.txt getorf.txt godef.txt goname.txt helixturnhelix.txt hmoment.txt iep.txt infoalign.txt infoassembly.txt infobase.txt inforesidue.txt infoseq.txt isochore.txt jaspextract.txt jaspscan.txt jembossctl.txt '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/programs/text'
 ../../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/programs/text'
 /usr/bin/install -c -m 644 lindna.txt listor.txt makenucseq.txt makeprotseq.txt marscan.txt maskambignuc.txt maskambigprot.txt maskfeat.txt maskseq.txt matcher.txt megamerger.txt merger.txt msbar.txt mwcontam.txt mwfilter.txt needle.txt needleall.txt newcpgreport.txt newcpgseek.txt newseq.txt nohtml.txt noreturn.txt nospace.txt notab.txt notseq.txt nthseq.txt nthseqset.txt octanol.txt oddcomp.txt ontocount.txt ontoget.txt ontogetcommon.txt ontogetdown.txt ontogetobsolete.txt ontogetroot.txt ontogetsibs.txt ontogetup.txt ontoisobsolete.txt ontotext.txt palindrome.txt '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/programs/text'
 /usr/bin/install -c -m 644 pasteseq.txt patmatdb.txt patmatmotifs.txt pepcoil.txt pepdigest.txt pepinfo.txt pepnet.txt pepstats.txt pepwheel.txt pepwindow.txt pepwindowall.txt plotcon.txt plotorf.txt polydot.txt preg.txt prettyplot.txt prettyseq.txt primersearch.txt printsextract.txt profit.txt prophecy.txt prophet.txt prosextract.txt pscan.txt psiphi.txt rebaseextract.txt recoder.txt redata.txt refseqget.txt remap.txt restover.txt restrict.txt revseq.txt seealso.txt seqcount.txt seqmatchall.txt seqret.txt seqretsetall.txt seqretsplit.txt seqxref.txt '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/programs/text'
 /usr/bin/install -c -m 644 seqxrefget.txt servertell.txt showalign.txt showdb.txt showfeat.txt showorf.txt showpep.txt showseq.txt showserver.txt shuffleseq.txt sigcleave.txt silent.txt sirna.txt sixpack.txt sizeseq.txt skipredundant.txt skipseq.txt splitsource.txt splitter.txt stretcher.txt stssearch.txt supermatcher.txt syco.txt taxget.txt taxgetdown.txt taxgetrank.txt taxgetspecies.txt taxgetup.txt tcode.txt textget.txt textsearch.txt tfextract.txt tfm.txt tfscan.txt tmap.txt tranalign.txt transeq.txt trimest.txt trimseq.txt trimspace.txt '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/programs/text'
 /usr/bin/install -c -m 644 twofeat.txt union.txt urlget.txt variationget.txt vectorstrip.txt water.txt whichdb.txt wobble.txt wordcount.txt wordfinder.txt wordmatch.txt wossdata.txt wossinput.txt wossname.txt wossoperation.txt wossoutput.txt wossparam.txt wosstopic.txt yank.txt '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/programs/text'
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
Making install in tutorials
make[3]: Nothing to be done for `install-exec-am'.
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/tutorials'
 /usr/bin/install -c -m 644 emboss-gcg.ppt emboss-interfaces.ppt emboss-talk.ppt emboss_tut.tar.gz '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/doc/tutorials'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
Making install in jemboss
Making install in images
make[3]: Nothing to be done for `install-exec-am'.
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/jemboss/images'
 /usr/bin/install -c -m 644 Backward_arrow_button.gif Forward_arrow_button.gif Go_button.gif Information_button.gif Jemboss_logo_greyback.gif Jemboss_logo_large.gif Jemboss_logo_small.gif Job_manager_button.gif Refresh_button.gif Refresh_button2.gif jay64.jpg '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/jemboss/images'
Making install in lib
Making install in axis
make[4]: Nothing to be done for `install-exec-am'.
 ../../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/jemboss/lib/axis'
 /usr/bin/install -c -m 644 axis-ant.jar axis.jar commons-discovery.jar commons-logging.jar jaxrpc.jar log4j-1.2.8.jar saaj.jar servlet.jar wsdl4j.jar '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/jemboss/lib/axis'
make[4]: Nothing to be done for `install-exec-am'.
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/jemboss/lib'
 /usr/bin/install -c -m 644 README activation.jar jakarta-regexp-1.2.jar mail.jar jalviewApplet.jar jemboss.jar '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/jemboss/lib'
Making install in resources
/Applications/Xcode.app/Contents/Developer/usr/bin/make  install-exec-hook
(if test -d /sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/jemboss/resources ; then \
		echo "resources folder exists"; \
	else \
		mkdir -p /sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/jemboss/resources; \
	fi);
echo "Preparing /sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/jemboss/resources/jemboss.properties"; \
	sed "s|user.auth=true|user.auth=false|" jemboss.properties | sed "s|jemboss.server=true|jemboss.server=false|" | sed "s|/packages/emboss/STABLE|/sw|" > jemboss.properties.new;
Preparing /sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/jemboss/resources/jemboss.properties
mv -f jemboss.properties.new /sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/jemboss/resources/jemboss.properties;
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/jemboss/resources'
 /usr/bin/install -c -m 644 readme.html readmeAlign.html readmeDNADraw.html results.html version filemgr.html seqList.html '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/jemboss/resources'
Making install in utils
make[3]: Nothing to be done for `install-exec-am'.
 ../.././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/jemboss/utils'
 /usr/bin/install -c -m 644 install-jemboss-server.sh keys.sh makeJar.csh makeJNLP.sh makeFileManagerJNLP.sh template.html README jws-launch-button.png '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/jemboss/utils'
 .././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/bin'
 /usr/bin/install -c runJemboss.sh '/sw/build.build/root-emboss-6.5.7-105/sw/bin'
/Applications/Xcode.app/Contents/Developer/usr/bin/make  install-exec-hook
rm -f /sw/build.build/root-emboss-6.5.7-105indir/runJemboss.csh;
 .././install-sh -c -d '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/jemboss'
 /usr/bin/install -c -m 644 LICENSE readme.html README '/sw/build.build/root-emboss-6.5.7-105/sw/share/EMBOSS/jemboss'
/Applications/Xcode.app/Contents/Developer/usr/bin/make  install-exec-hook
make[3]: Nothing to be done for `install-exec-hook'.
make[2]: Nothing to be done for `install-data-am'.
sudo -u fink-bld [ENV] sh -c /tmp/fink.ciPGc
/usr/bin/install -d -m 700 /sw/build.build/root-emboss-6.5.7-105/sw/share/doc/emboss
/bin/cp -r AUTHORS /sw/build.build/root-emboss-6.5.7-105/sw/share/doc/emboss/
/bin/cp -r COMPAT /sw/build.build/root-emboss-6.5.7-105/sw/share/doc/emboss/
/bin/cp -r COPYING /sw/build.build/root-emboss-6.5.7-105/sw/share/doc/emboss/
/bin/cp -r ChangeLog /sw/build.build/root-emboss-6.5.7-105/sw/share/doc/emboss/
/bin/cp -r FAQ /sw/build.build/root-emboss-6.5.7-105/sw/share/doc/emboss/
/bin/cp -r INSTALL /sw/build.build/root-emboss-6.5.7-105/sw/share/doc/emboss/
/bin/cp -r KNOWN_BUGS /sw/build.build/root-emboss-6.5.7-105/sw/share/doc/emboss/
/bin/cp -r LICENSE /sw/build.build/root-emboss-6.5.7-105/sw/share/doc/emboss/
/bin/cp -r NEWS /sw/build.build/root-emboss-6.5.7-105/sw/share/doc/emboss/
/bin/cp -r ONEWS /sw/build.build/root-emboss-6.5.7-105/sw/share/doc/emboss/
/bin/cp -r PROBLEMS /sw/build.build/root-emboss-6.5.7-105/sw/share/doc/emboss/
/bin/cp -r README /sw/build.build/root-emboss-6.5.7-105/sw/share/doc/emboss/
/bin/cp -r THANKS /sw/build.build/root-emboss-6.5.7-105/sw/share/doc/emboss/
/bin/chmod -R go=u-w /sw/build.build/root-emboss-6.5.7-105/sw/share/doc/emboss
/usr/bin/install -d -m 755 /sw/build.build/root-emboss-6.5.7-105/sw/etc/profile.d
echo "setenv EMBOSS_DATA '/sw/share/EMBOSS/data'" >> /sw/build.build/root-emboss-6.5.7-105/sw/etc/profile.d/emboss.csh.env
echo "export EMBOSS_DATA='/sw/share/EMBOSS/data'" >> /sw/build.build/root-emboss-6.5.7-105/sw/etc/profile.d/emboss.sh.env
/usr/bin/touch /sw/build.build/root-emboss-6.5.7-105/sw/etc/profile.d/emboss.csh
/usr/bin/touch /sw/build.build/root-emboss-6.5.7-105/sw/etc/profile.d/emboss.sh
/bin/cat /sw/build.build/root-emboss-6.5.7-105/sw/etc/profile.d/emboss.csh >> /sw/build.build/root-emboss-6.5.7-105/sw/etc/profile.d/emboss.csh.env
/bin/cat /sw/build.build/root-emboss-6.5.7-105/sw/etc/profile.d/emboss.sh >> /sw/build.build/root-emboss-6.5.7-105/sw/etc/profile.d/emboss.sh.env
/bin/mv -f /sw/build.build/root-emboss-6.5.7-105/sw/etc/profile.d/emboss.csh.env /sw/build.build/root-emboss-6.5.7-105/sw/etc/profile.d/emboss.csh
/bin/mv -f /sw/build.build/root-emboss-6.5.7-105/sw/etc/profile.d/emboss.sh.env /sw/build.build/root-emboss-6.5.7-105/sw/etc/profile.d/emboss.sh
/bin/chmod 755 /sw/build.build/root-emboss-6.5.7-105/sw/etc/profile.d/emboss.*
/bin/rm -f /sw/build.build/root-emboss-6.5.7-105/sw/info/dir /sw/build.build/root-emboss-6.5.7-105/sw/info/dir.old /sw/build.build/root-emboss-6.5.7-105/sw/share/info/dir /sw/build.build/root-emboss-6.5.7-105/sw/share/info/dir.old
/bin/rm -rf /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105
/bin/mkdir -p /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw
/bin/mkdir -p /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/DEBIAN
/usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105
sudo -u fink-bld [ENV] sh -c /tmp/fink.sQtGk
/usr/bin/install -d -m 755 /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/lib/EMBOSS/lib
/bin/mv /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib/libacd.6*.dylib /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/lib/EMBOSS/lib/
/bin/mv /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib/libajax.6*.dylib /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/lib/EMBOSS/lib/
/bin/mv /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib/libajaxdb.6*.dylib /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/lib/EMBOSS/lib/
/bin/mv /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib/libajaxg.6*.dylib /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/lib/EMBOSS/lib/
/bin/mv /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib/libensembl.6*.dylib /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/lib/EMBOSS/lib/
/usr/bin/install -d -m 700 /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/share/doc/emboss-libajax6-shlibs
/bin/cp -r AUTHORS /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/share/doc/emboss-libajax6-shlibs/
/bin/cp -r COMPAT /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/share/doc/emboss-libajax6-shlibs/
/bin/cp -r COPYING /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/share/doc/emboss-libajax6-shlibs/
/bin/cp -r ChangeLog /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/share/doc/emboss-libajax6-shlibs/
/bin/cp -r FAQ /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/share/doc/emboss-libajax6-shlibs/
/bin/cp -r INSTALL /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/share/doc/emboss-libajax6-shlibs/
/bin/cp -r KNOWN_BUGS /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/share/doc/emboss-libajax6-shlibs/
/bin/cp -r LICENSE /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/share/doc/emboss-libajax6-shlibs/
/bin/cp -r NEWS /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/share/doc/emboss-libajax6-shlibs/
/bin/cp -r ONEWS /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/share/doc/emboss-libajax6-shlibs/
/bin/cp -r PROBLEMS /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/share/doc/emboss-libajax6-shlibs/
/bin/cp -r README /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/share/doc/emboss-libajax6-shlibs/
/bin/cp -r THANKS /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/share/doc/emboss-libajax6-shlibs/
/bin/chmod -R go=u-w /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/share/doc/emboss-libajax6-shlibs
/bin/rm -f /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/info/dir /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/info/dir.old /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/share/info/dir /sw/build.build/root-emboss-libajax6-shlibs-6.5.7-105/sw/share/info/dir.old
/bin/rm -rf /sw/build.build/root-emboss-libajax6-dev-6.5.7-105
/bin/mkdir -p /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw
/bin/mkdir -p /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/DEBIAN
/usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-emboss-libajax6-dev-6.5.7-105
sudo -u fink-bld [ENV] sh -c /tmp/fink.pZQ5G
/usr/bin/install -d -m 755 /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/lib/EMBOSS/lib
/bin/mv /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib/libacd.* /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/lib/EMBOSS/lib/
/bin/mv /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib/libajax.* /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/lib/EMBOSS/lib/
/bin/mv /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib/libajaxdb.* /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/lib/EMBOSS/lib/
/bin/mv /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib/libajaxg.* /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/lib/EMBOSS/lib/
/bin/mv /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib/libensembl.* /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/lib/EMBOSS/lib/
/usr/bin/install -d -m 755 /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/lib/EMBOSS/include
/bin/mv /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/include/aj*.h /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/lib/EMBOSS/include/
/bin/mv /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/include/ens*.h /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/lib/EMBOSS/include/
/usr/bin/install -d -m 700 /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/share/doc/emboss-libajax6-dev
/bin/cp -r AUTHORS /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/share/doc/emboss-libajax6-dev/
/bin/cp -r COMPAT /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/share/doc/emboss-libajax6-dev/
/bin/cp -r COPYING /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/share/doc/emboss-libajax6-dev/
/bin/cp -r ChangeLog /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/share/doc/emboss-libajax6-dev/
/bin/cp -r FAQ /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/share/doc/emboss-libajax6-dev/
/bin/cp -r INSTALL /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/share/doc/emboss-libajax6-dev/
/bin/cp -r KNOWN_BUGS /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/share/doc/emboss-libajax6-dev/
/bin/cp -r LICENSE /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/share/doc/emboss-libajax6-dev/
/bin/cp -r NEWS /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/share/doc/emboss-libajax6-dev/
/bin/cp -r ONEWS /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/share/doc/emboss-libajax6-dev/
/bin/cp -r PROBLEMS /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/share/doc/emboss-libajax6-dev/
/bin/cp -r README /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/share/doc/emboss-libajax6-dev/
/bin/cp -r THANKS /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/share/doc/emboss-libajax6-dev/
/bin/chmod -R go=u-w /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/share/doc/emboss-libajax6-dev
/bin/rm -f /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/info/dir /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/info/dir.old /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/share/info/dir /sw/build.build/root-emboss-libajax6-dev-6.5.7-105/sw/share/info/dir.old
/bin/rm -rf /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105
/bin/mkdir -p /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105/sw
/bin/mkdir -p /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105/DEBIAN
/usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105
sudo -u fink-bld [ENV] sh -c /tmp/fink.tP82f
/usr/bin/install -d -m 755 /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105/sw/lib/EMBOSS/lib
/bin/mv /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib/libnucleus.6*.dylib /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105/sw/lib/EMBOSS/lib/
/usr/bin/install -d -m 700 /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105/sw/share/doc/emboss-libnucleus6-shlibs
/bin/cp -r AUTHORS /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105/sw/share/doc/emboss-libnucleus6-shlibs/
/bin/cp -r COMPAT /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105/sw/share/doc/emboss-libnucleus6-shlibs/
/bin/cp -r COPYING /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105/sw/share/doc/emboss-libnucleus6-shlibs/
/bin/cp -r ChangeLog /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105/sw/share/doc/emboss-libnucleus6-shlibs/
/bin/cp -r FAQ /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105/sw/share/doc/emboss-libnucleus6-shlibs/
/bin/cp -r INSTALL /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105/sw/share/doc/emboss-libnucleus6-shlibs/
/bin/cp -r KNOWN_BUGS /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105/sw/share/doc/emboss-libnucleus6-shlibs/
/bin/cp -r LICENSE /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105/sw/share/doc/emboss-libnucleus6-shlibs/
/bin/cp -r NEWS /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105/sw/share/doc/emboss-libnucleus6-shlibs/
/bin/cp -r ONEWS /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105/sw/share/doc/emboss-libnucleus6-shlibs/
/bin/cp -r PROBLEMS /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105/sw/share/doc/emboss-libnucleus6-shlibs/
/bin/cp -r README /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105/sw/share/doc/emboss-libnucleus6-shlibs/
/bin/cp -r THANKS /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105/sw/share/doc/emboss-libnucleus6-shlibs/
/bin/chmod -R go=u-w /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105/sw/share/doc/emboss-libnucleus6-shlibs
/bin/rm -f /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105/sw/info/dir /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105/sw/info/dir.old /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105/sw/share/info/dir /sw/build.build/root-emboss-libnucleus6-shlibs-6.5.7-105/sw/share/info/dir.old
/bin/rm -rf /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105
/bin/mkdir -p /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/sw
/bin/mkdir -p /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/DEBIAN
/usr/sbin/chown -R fink-bld:fink-bld /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105
sudo -u fink-bld [ENV] sh -c /tmp/fink.1wsyF
/usr/bin/install -d -m 755 /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/sw/lib/EMBOSS/lib
/bin/mv /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/lib/libnucleus.* /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/sw/lib/EMBOSS/lib/
/usr/bin/install -d -m 755 /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/sw/lib/EMBOSS/include
/bin/mv /sw/build.build/root-emboss-6.5.7-105/sw/lib/EMBOSS/include/em*.h /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/sw/lib/EMBOSS/include/
/usr/bin/install -d -m 700 /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/sw/share/doc/emboss-libnucleus6-dev
/bin/cp -r AUTHORS /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/sw/share/doc/emboss-libnucleus6-dev/
/bin/cp -r COMPAT /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/sw/share/doc/emboss-libnucleus6-dev/
/bin/cp -r COPYING /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/sw/share/doc/emboss-libnucleus6-dev/
/bin/cp -r ChangeLog /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/sw/share/doc/emboss-libnucleus6-dev/
/bin/cp -r FAQ /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/sw/share/doc/emboss-libnucleus6-dev/
/bin/cp -r INSTALL /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/sw/share/doc/emboss-libnucleus6-dev/
/bin/cp -r KNOWN_BUGS /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/sw/share/doc/emboss-libnucleus6-dev/
/bin/cp -r LICENSE /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/sw/share/doc/emboss-libnucleus6-dev/
/bin/cp -r NEWS /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/sw/share/doc/emboss-libnucleus6-dev/
/bin/cp -r ONEWS /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/sw/share/doc/emboss-libnucleus6-dev/
/bin/cp -r PROBLEMS /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/sw/share/doc/emboss-libnucleus6-dev/
/bin/cp -r README /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/sw/share/doc/emboss-libnucleus6-dev/
/bin/cp -r THANKS /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/sw/share/doc/emboss-libnucleus6-dev/
/bin/chmod -R go=u-w /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/sw/share/doc/emboss-libnucleus6-dev
/bin/rm -f /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/sw/info/dir /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/sw/info/dir.old /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/sw/share/info/dir /sw/build.build/root-emboss-libnucleus6-dev-6.5.7-105/sw/share/info/dir.old
Reverting ownership of install dir to root
Writing control file...
Writing md5sums file...
env LANG=C LC_ALL=C dpkg-deb -b root-emboss-6.5.7-105 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci
dpkg-deb: building package `emboss' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/emboss_6.5.7-105_darwin-x86_64.deb'.
Reverting ownership of install dir to root
Writing control file...
Creating shlibs files...
Writing md5sums file...
env LANG=C LC_ALL=C dpkg-deb -b root-emboss-libajax6-shlibs-6.5.7-105 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci
dpkg-deb: building package `emboss-libajax6-shlibs' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/emboss-libajax6-shlibs_6.5.7-105_darwin-x86_64.deb'.
Reverting ownership of install dir to root
Writing control file...
Writing md5sums file...
env LANG=C LC_ALL=C dpkg-deb -b root-emboss-libajax6-dev-6.5.7-105 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci
dpkg-deb: building package `emboss-libajax6-dev' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/emboss-libajax6-dev_6.5.7-105_darwin-x86_64.deb'.
Reverting ownership of install dir to root
Writing control file...
Creating shlibs files...
Writing md5sums file...
env LANG=C LC_ALL=C dpkg-deb -b root-emboss-libnucleus6-shlibs-6.5.7-105 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci
dpkg-deb: building package `emboss-libnucleus6-shlibs' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/emboss-libnucleus6-shlibs_6.5.7-105_darwin-x86_64.deb'.
Reverting ownership of install dir to root
Writing control file...
Writing md5sums file...
env LANG=C LC_ALL=C dpkg-deb -b root-emboss-libnucleus6-dev-6.5.7-105 /sw/fink/10.9/stable/main/binary-darwin-x86_64/sci
dpkg-deb: building package `emboss-libnucleus6-dev' in `/sw/fink/10.9/stable/main/binary-darwin-x86_64/sci/emboss-libnucleus6-dev_6.5.7-105_darwin-x86_64.deb'.
Removing runtime build-lock...
Removing build-lock package...
/sw/bin/dpkg-lockwait -r fink-buildlock-emboss-6.5.7-105
(Reading database ... 7992 files and directories currently installed.)
Removing fink-buildlock-emboss-6.5.7-105 ...